Psyllid ID: psy744
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | 2.2.26 [Sep-21-2011] | |||||||
| Q91WG5 | 566 | 5'-AMP-activated protein | yes | N/A | 0.733 | 0.524 | 0.533 | 2e-96 | |
| Q5R4S0 | 524 | 5'-AMP-activated protein | yes | N/A | 0.735 | 0.568 | 0.527 | 2e-95 | |
| Q9UGJ0 | 569 | 5'-AMP-activated protein | yes | N/A | 0.735 | 0.523 | 0.528 | 8e-95 | |
| Q09138 | 330 | 5'-AMP-activated protein | no | N/A | 0.676 | 0.830 | 0.576 | 3e-92 | |
| P54619 | 331 | 5'-AMP-activated protein | no | N/A | 0.676 | 0.827 | 0.576 | 3e-92 | |
| P58108 | 330 | 5'-AMP-activated protein | no | N/A | 0.676 | 0.830 | 0.576 | 4e-92 | |
| O54950 | 330 | 5'-AMP-activated protein | no | N/A | 0.676 | 0.830 | 0.576 | 5e-92 | |
| P80385 | 330 | 5'-AMP-activated protein | no | N/A | 0.676 | 0.830 | 0.569 | 7e-91 | |
| Q9MYP4 | 514 | 5'-AMP-activated protein | no | N/A | 0.802 | 0.632 | 0.457 | 5e-81 | |
| Q9UGI9 | 489 | 5'-AMP-activated protein | no | N/A | 0.713 | 0.591 | 0.485 | 1e-80 |
| >sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/330 (53%), Positives = 237/330 (71%), Gaps = 33/330 (10%)
Query: 61 LDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRA 120
L+K++F + E+D + ++++F + HKCYD++PTS+KLVVFDT L VKKAFFALV NG+RA
Sbjct: 242 LEKLEFQE-EEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRA 300
Query: 121 APLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET--------------- 165
APLW+S Q +VGMLTITDFI IL YY S + + ELEEHK+ET
Sbjct: 301 APLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLVN 360
Query: 166 ------------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNK 212
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+ +
Sbjct: 361 ISPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQ 420
Query: 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272
L +L IGTY N+ + +T II AL F+ERR+SALP+ D G +VDI++KFDVINLAA
Sbjct: 421 NLDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAA 480
Query: 273 EKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLG 332
EKTY NLD+T+ +A +H++ +FEGV KC ETL T+++RIVRAEVHRLVVV+E D ++G
Sbjct: 481 EKTYNNLDITVTQALQHRSQYFEGVVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIVG 540
Query: 333 VLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
++SLSDIL L+L P+ G + +++E
Sbjct: 541 IISLSDILQALILTPA----GAKQKETETE 566
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Mus musculus (taxid: 10090) |
| >sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/330 (52%), Positives = 234/330 (70%), Gaps = 32/330 (9%)
Query: 61 LDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRA 120
L+K++F D +D + ++++F + HKCYD++PTS+KLVVFDT L VKKAFFALV NG+RA
Sbjct: 199 LEKLEFEDEVEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRA 258
Query: 121 APLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET--------------- 165
APLW+S Q +VGMLTITDFI IL YY S + + ELEEHK+ET
Sbjct: 259 APLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLVN 318
Query: 166 ------------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNK 212
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+ +
Sbjct: 319 ISPDASLLDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQ 378
Query: 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272
L +L IGTY N+ + +T II AL F+ERR+SALP+ D G +VDI++KFDVINLAA
Sbjct: 379 NLDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAA 438
Query: 273 EKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLG 332
EKTY NLD+T+ +A +H++ +FEGV KC E L T+++RIVRAEVHRLVV +E D ++G
Sbjct: 439 EKTYNNLDITVTQALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVANEADSIVG 498
Query: 333 VLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
++SLSDIL L+L P+ G + +++E
Sbjct: 499 IISLSDILQALILTPA----GAKQKETETE 524
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Pongo abelii (taxid: 9601) |
| >sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 175/331 (52%), Positives = 235/331 (70%), Gaps = 33/331 (9%)
Query: 61 LDKIDFADLE-KDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIR 119
L+K++F D +D + ++++F + HKCYD++PTS+KLVVFDT L VKKAFFALV NG+R
Sbjct: 243 LEKLEFEDEAVEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVR 302
Query: 120 AAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------- 165
AAPLW+S Q +VGMLTITDFI IL YY S + + ELEEHK+ET
Sbjct: 303 AAPLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLV 362
Query: 166 -------------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLN 211
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+
Sbjct: 363 NISPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMK 422
Query: 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
+ L +L IGTY N+ + +T II AL F+ERR+SALP+ D G +VDI++KFDVINLA
Sbjct: 423 QNLDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLA 482
Query: 272 AEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVL 331
AEKTY NLD+T+ +A +H++ +FEGV KC E L T+++RIVRAEVHRLVVV+E D ++
Sbjct: 483 AEKTYNNLDITVTQALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIV 542
Query: 332 GVLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
G++SLSDIL L+L P+ G + +++E
Sbjct: 543 GIISLSDILQALILTPA----GAKQKETETE 569
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Homo sapiens (taxid: 9606) |
| >sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 174/302 (57%), Positives = 216/302 (71%), Gaps = 28/302 (9%)
Query: 72 DGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131
+ N ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS Q +
Sbjct: 23 ESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSF 82
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------------------- 165
VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 83 VGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV 142
Query: 166 -NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
+LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 143 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 202
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 203 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 262
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL T++ R+V AEVHRLVVVDE+D V G++SLSDIL L
Sbjct: 263 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 322
Query: 344 VL 345
VL
Sbjct: 323 VL 324
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Sus scrofa (taxid: 9823) |
| >sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 174/302 (57%), Positives = 216/302 (71%), Gaps = 28/302 (9%)
Query: 72 DGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131
+ N ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS Q +
Sbjct: 23 ESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSF 82
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------------------- 165
VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 83 VGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV 142
Query: 166 -NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
+LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 143 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 202
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 203 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 262
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL T++ R+V AEVHRLVVVDE+D V G++SLSDIL L
Sbjct: 263 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 322
Query: 344 VL 345
VL
Sbjct: 323 VL 324
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Homo sapiens (taxid: 9606) |
| >sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/302 (57%), Positives = 216/302 (71%), Gaps = 28/302 (9%)
Query: 72 DGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131
+ N ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS Q +
Sbjct: 23 ESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSF 82
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------------------- 165
VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 83 VGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV 142
Query: 166 -NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
+LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 143 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 202
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 203 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 262
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL T++ R+V AEVHRLVVVDE+D V G++SLSDIL L
Sbjct: 263 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 322
Query: 344 VL 345
VL
Sbjct: 323 VL 324
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Bos taurus (taxid: 9913) |
| >sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 174/302 (57%), Positives = 216/302 (71%), Gaps = 28/302 (9%)
Query: 72 DGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131
+ N ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS Q +
Sbjct: 22 ESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSF 81
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------------------- 165
VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 82 VGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV 141
Query: 166 -NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
+LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L++L+IGTY
Sbjct: 142 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLQELQIGTYA 201
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 202 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 261
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL T++ R+V AEVHRLVVVDE D V G++SLSDIL L
Sbjct: 262 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321
Query: 344 VL 345
VL
Sbjct: 322 VL 323
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Mus musculus (taxid: 10090) |
| >sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 172/302 (56%), Positives = 214/302 (70%), Gaps = 28/302 (9%)
Query: 72 DGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131
+ + ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS Q +
Sbjct: 22 ESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSF 81
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------------------- 165
VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 82 VGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV 141
Query: 166 -NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
+LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 142 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 201
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 202 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 261
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL ++ R+V AEVHRLVVVDE D V G++SLSDIL L
Sbjct: 262 TKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321
Query: 344 VL 345
VL
Sbjct: 322 VL 323
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Rattus norvegicus (taxid: 10116) |
| >sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 165/361 (45%), Positives = 228/361 (63%), Gaps = 36/361 (9%)
Query: 27 SSYRGSSDLLDLHHAVNAAVLFRDSRGL--------PVATSFLDKIDFADLEKDGGNQIF 78
S+ ++D LDL +A+ D GL P L ++ + D + G Q++
Sbjct: 150 SASDSNTDHLDLGIEFSASAASGDELGLVEEKPAPCPSPEVLLPRLGWDDELQKPGAQVY 209
Query: 79 VKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTIT 138
+ F + H CYD + TS+KLV+FDT L +KKAFFALV NG+RAAPLWDS Q +VGMLTIT
Sbjct: 210 MHFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTIT 269
Query: 139 DFIKILQMYYTSSSITMEELEEHKLET---------------------------NLIDYK 171
DFI +L YY S + + E+EEHK+ET LI +
Sbjct: 270 DFILVLHRYYRSPLVQIYEIEEHKIETWREIYLQGCFKPLVSISPNDSLFEAVYALIKNR 329
Query: 172 IHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE 230
IHRLPV+D + G VL+ILTHKR+L+FL ++ LP+PSFL +T++DL IGT+ ++ V E
Sbjct: 330 IHRLPVLDPVSGAVLHILTHKRLLKFLHIFGTLLPRPSFLYRTIQDLGIGTFRDLAVVLE 389
Query: 231 ETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290
I+ AL F++RRVSALP+ + G +V ++++FDVI+LAA++TY +LD+ + EA +
Sbjct: 390 TAPILTALDIFVDRRVSALPVVNETGQVVGLYSRFDVIHLAAQQTYNHLDMNVGEALRQR 449
Query: 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDD 350
T EGV C ETL V++RIVR +VHRLV+VDE H+LGV+SLSDIL LVL P+
Sbjct: 450 TLCLEGVLSCQPHETLGEVIDRIVREQVHRLVLVDETQHLLGVVSLSDILQALVLSPAGI 509
Query: 351 D 351
D
Sbjct: 510 D 510
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Sus scrofa (taxid: 9823) |
| >sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/317 (48%), Positives = 215/317 (67%), Gaps = 28/317 (8%)
Query: 63 KIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAP 122
K+ + D + G QI+++F + H CYD + TS+KLV+FDT L +KKAFFALV NG+RAAP
Sbjct: 169 KLGWDDELRKPGAQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAP 228
Query: 123 LWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET----------------- 165
LWDS Q +VGMLTITDFI +L YY S + + E+E+HK+ET
Sbjct: 229 LWDSKKQSFVGMLTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSIS 288
Query: 166 ----------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTL 214
LI +IHRLPV+D + GNVL+ILTHKR+L+FL ++ + LP+PSFL +T+
Sbjct: 289 PNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRTI 348
Query: 215 RDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+DL IGT+ ++ V E I+ AL F++RRVSALP+ + G +V ++++FDVI+LAA++
Sbjct: 349 QDLGIGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQQ 408
Query: 275 TYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVL 334
TY +LD+++ EA +T EGV C E+L V++RI R +VHRLV+VDE H+LGV+
Sbjct: 409 TYNHLDMSVGEALRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVV 468
Query: 335 SLSDILVYLVLKPSDDD 351
SLSDIL LVL P+ D
Sbjct: 469 SLSDILQALVLSPAGID 485
|
AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | ||||||
| 242008127 | 770 | AMP-activated protein kinase, gamma regu | 0.874 | 0.459 | 0.697 | 1e-150 | |
| 383862359 | 1183 | PREDICTED: uncharacterized protein LOC10 | 0.864 | 0.295 | 0.679 | 1e-145 | |
| 24648655 | 1400 | SNF4/AMP-activated protein kinase gamma | 0.881 | 0.255 | 0.652 | 1e-144 | |
| 195454217 | 1306 | GK14491 [Drosophila willistoni] gi|19417 | 0.879 | 0.272 | 0.654 | 1e-143 | |
| 307177510 | 678 | 5'-AMP-activated protein kinase subunit | 0.940 | 0.561 | 0.634 | 1e-143 | |
| 24648645 | 947 | SNF4/AMP-activated protein kinase gamma | 0.881 | 0.376 | 0.652 | 1e-143 | |
| 27228260 | 906 | loechrig isoform II [Drosophila melanoga | 0.888 | 0.397 | 0.650 | 1e-142 | |
| 4007492 | 647 | SNF4/AMP-activated protein kinase gamma | 0.881 | 0.551 | 0.652 | 1e-142 | |
| 24648657 | 906 | SNF4/AMP-activated protein kinase gamma | 0.888 | 0.397 | 0.647 | 1e-142 | |
| 328719052 | 816 | PREDICTED: hypothetical protein LOC10016 | 0.849 | 0.421 | 0.691 | 1e-142 |
| >gi|242008127|ref|XP_002424864.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Pediculus humanus corporis] gi|212508414|gb|EEB12126.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 272/390 (69%), Positives = 319/390 (81%), Gaps = 36/390 (9%)
Query: 1 MTRESALLRRSSLDPDRRRLSLGTVNSSY---RGSSDLLDLHHAVNAAVLFRDSRGLPVA 57
+ +E ALLRRSSLDP+RRRLSLG VNS++ R S LD HHA A+LFRDSRGLPVA
Sbjct: 345 IVKEGALLRRSSLDPERRRLSLGPVNSAHGPHRASDAFLDPHHA---AILFRDSRGLPVA 401
Query: 58 TSFLDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNG 117
FL+K++ +DLE+D +QIFVKFF+FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNG
Sbjct: 402 DPFLEKVNMSDLEEDE-SQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNG 460
Query: 118 IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET------------ 165
+RAAPLWDSV Q++VGMLTITDFIKIL+MYYTS S+TM+ELEEHKL+T
Sbjct: 461 VRAAPLWDSVKQKFVGMLTITDFIKILRMYYTSPSVTMDELEEHKLDTWRNVLKVLPLVY 520
Query: 166 ------------NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNK 212
LI+ +IHRLPVID E GNVLYILTHKRILRFLFLYINDLPKPS++NK
Sbjct: 521 ISPDSSLYDAIKTLINNRIHRLPVIDPETGNVLYILTHKRILRFLFLYINDLPKPSYMNK 580
Query: 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272
TL +LKIGT+E +ET E+TSII AL+KF+ERRVSALPM D +G LVDIFAKFDVINLAA
Sbjct: 581 TLGELKIGTFEGIETATEDTSIILALKKFVERRVSALPMIDKDGKLVDIFAKFDVINLAA 640
Query: 273 EKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLG 332
EKTY NLDV+LK+ANEH+ +WFEGV+KC LDE LFT+MERIVRAEVHRLVVVD+ D V+G
Sbjct: 641 EKTYNNLDVSLKKANEHRNEWFEGVQKCTLDEKLFTIMERIVRAEVHRLVVVDDSDKVIG 700
Query: 333 VLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
++SLSD+L +LVLKP G + +++DSE
Sbjct: 701 IISLSDLLFHLVLKPG----GENGSAADSE 726
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383862359|ref|XP_003706651.1| PREDICTED: uncharacterized protein LOC100882269 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/381 (67%), Positives = 304/381 (79%), Gaps = 31/381 (8%)
Query: 6 ALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSFLDKID 65
LRRSSLDP RR SLGT +R S LD V+AA+LFRDSRGLPV FL+K+
Sbjct: 724 GALRRSSLDPGARRFSLGTPAIPHRASDACLD---PVHAAILFRDSRGLPVVDPFLEKVS 780
Query: 66 FADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWD 125
+DLE+D +QIFVKFFKFHKCYDLIPTSAKLVVFDT LLVKKAFFALVYNG+RAAPLWD
Sbjct: 781 LSDLEEDE-SQIFVKFFKFHKCYDLIPTSAKLVVFDTHLLVKKAFFALVYNGVRAAPLWD 839
Query: 126 SVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------------- 165
S Q++VGMLTITDFIKILQMYYTS S+TM+ELEEH+L+T
Sbjct: 840 SARQEFVGMLTITDFIKILQMYYTSPSVTMDELEEHELDTWRKVLKDEVHPLVSISPDAS 899
Query: 166 ------NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLK 218
LI +IHRLPVID + GNVLYILTHKRILRFLFLYI++LPKPSF +KTLR+L+
Sbjct: 900 LYEAIKTLIQNRIHRLPVIDPDTGNVLYILTHKRILRFLFLYIHELPKPSFTDKTLRELR 959
Query: 219 IGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN 278
IGT+EN+ET EETSII AL+KF+ERRVSALP+ DSEG LV+I++KFDVINLAAEKTY N
Sbjct: 960 IGTFENIETATEETSIILALKKFVERRVSALPIIDSEGKLVNIYSKFDVINLAAEKTYNN 1019
Query: 279 LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSD 338
LDV+L+EANEH+ +WFEGV+ C LDETLFT+ME+IVRAEVHRLVVVDEDD V+G++SLSD
Sbjct: 1020 LDVSLREANEHRNEWFEGVQSCKLDETLFTIMEKIVRAEVHRLVVVDEDDKVIGIISLSD 1079
Query: 339 ILVYLVLKPSDDDIGVDETSS 359
+L YLVL+P +D ++ SS
Sbjct: 1080 LLFYLVLRPCGEDGSSNKDSS 1100
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24648655|ref|NP_732598.1| SNF4/AMP-activated protein kinase gamma subunit, isoform F [Drosophila melanogaster] gi|281362196|ref|NP_001163671.1| SNF4/AMP-activated protein kinase gamma subunit, isoform R [Drosophila melanogaster] gi|281362198|ref|NP_001163672.1| SNF4/AMP-activated protein kinase gamma subunit, isoform S [Drosophila melanogaster] gi|17944235|gb|AAL48012.1| LD22662p [Drosophila melanogaster] gi|23171854|gb|AAF55864.2| SNF4/AMP-activated protein kinase gamma subunit, isoform F [Drosophila melanogaster] gi|27228258|gb|AAN85714.1| loechrig isoform I [Drosophila melanogaster] gi|272477084|gb|ACZ94967.1| SNF4/AMP-activated protein kinase gamma subunit, isoform R [Drosophila melanogaster] gi|272477085|gb|ACZ94968.1| SNF4/AMP-activated protein kinase gamma subunit, isoform S [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/389 (65%), Positives = 308/389 (79%), Gaps = 32/389 (8%)
Query: 4 ESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSFLDK 63
+SA +RR+S D ++RR S+G RG LD HHA A+LFRDSRGLPVA FL+K
Sbjct: 855 QSAHMRRASADLEKRRASVGAAGRGLRGDG-TLDPHHA---AILFRDSRGLPVADPFLEK 910
Query: 64 IDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPL 123
++ +DLE+D +QIFVKFF+FHKCYDLIPTSAKLVVFDTQLLVKKAF+ALVYNG+RAAPL
Sbjct: 911 VNLSDLEEDD-SQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPL 969
Query: 124 WDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET------------------ 165
WDS QQ+VGMLTITDFIKILQMYY S + +ME+LEEHKL+T
Sbjct: 970 WDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPD 1029
Query: 166 --------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRD 216
LI +IHRLPVID GNVLYILTHKRILRFLFLYIN+LPKP+++ K+LR+
Sbjct: 1030 ASLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRE 1089
Query: 217 LKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY 276
LKIGTY N+ET E TSII AL+KF+ERRVSALP+ DS+G LVDI+AKFDVINLAAEKTY
Sbjct: 1090 LKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTY 1149
Query: 277 TNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
+LDV+L++ANEH+ +WFEGV+KC LDE+L+T+MERIVRAEVHRLVVVDE+ V+G++SL
Sbjct: 1150 NDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISL 1209
Query: 337 SDILVYLVLKPSDDDIGVDETSSDSEVPV 365
SDIL+YLVL+PS + +G E+S + PV
Sbjct: 1210 SDILLYLVLRPSGEGVGGSESSLRASDPV 1238
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195454217|ref|XP_002074141.1| GK14491 [Drosophila willistoni] gi|194170226|gb|EDW85127.1| GK14491 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/388 (65%), Positives = 307/388 (79%), Gaps = 32/388 (8%)
Query: 5 SALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSFLDKI 64
SA +RR+S D ++RR S+G S RG LD HHA A+LFRDSRGLPVA FL+K+
Sbjct: 755 SAHMRRASADLEKRRASVGAAGRSLRGDG-TLDPHHA---AILFRDSRGLPVADPFLEKV 810
Query: 65 DFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLW 124
+ +D E+D +QIFVKFF+FHKCYDLIPTSAKLVVFDTQLLVKKAF+ALVYNG+RAAPLW
Sbjct: 811 NLSDFEEDD-SQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLW 869
Query: 125 DSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET------------------- 165
DS QQ+VGMLTITDFIKILQMYY + + +ME+LEEHKL+T
Sbjct: 870 DSDKQQFVGMLTITDFIKILQMYYKTPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDA 929
Query: 166 -------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDL 217
LI +IHRLPVID GNVLYILTHKRILRFLFLYIN+LPKP+++ K+LRDL
Sbjct: 930 SLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRDL 989
Query: 218 KIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT 277
KIGTY+N+ET E TSII AL+KF+ERRVSALP+ DSEG LVDI+AKFDVINLAAEKTY
Sbjct: 990 KIGTYDNIETADETTSIITALKKFVERRVSALPLVDSEGRLVDIYAKFDVINLAAEKTYN 1049
Query: 278 NLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLS 337
+LDV+L++ANEH+ +WFEGV+KC LDE+L+T+MERIVRAEVHRLVVVD+ V+G++SLS
Sbjct: 1050 DLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDDQRKVIGIISLS 1109
Query: 338 DILVYLVLKPSDDDIGVDETSSDSEVPV 365
DIL+YLVL+PS + +G E+S + PV
Sbjct: 1110 DILLYLVLRPSGEGVGGSESSLRASDPV 1137
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307177510|gb|EFN66621.1| 5'-AMP-activated protein kinase subunit gamma-2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/419 (63%), Positives = 319/419 (76%), Gaps = 38/419 (9%)
Query: 3 RESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSFLD 62
R+ AL RRSSLDP RRLSLG +R S LD V+AA+LFRD+RGLPV FL+
Sbjct: 210 RQGAL-RRSSLDPTARRLSLGAPAIPHRASDACLD---PVHAAILFRDARGLPVVDPFLE 265
Query: 63 KIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAP 122
K+ +DLE+D +QIFVKFFKFHKCYDLIPTSAKLVVFDT LLVKKAFFALVYNG+RAAP
Sbjct: 266 KVSLSDLEEDE-SQIFVKFFKFHKCYDLIPTSAKLVVFDTHLLVKKAFFALVYNGVRAAP 324
Query: 123 LWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET----------------- 165
LWDS QQ++GMLTITDFIKILQMYYTS S+TM+ELEEH+L+T
Sbjct: 325 LWDSSRQQFIGMLTITDFIKILQMYYTSPSVTMDELEEHELDTWRKVLKDQVHPLVSIGP 384
Query: 166 ---------NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLR 215
LI +IHRLPVID + GNVLYILTHKRILRFLFLYI++LPKPSF NKTLR
Sbjct: 385 DASLYEAIRTLIQNRIHRLPVIDPDTGNVLYILTHKRILRFLFLYIHELPKPSFTNKTLR 444
Query: 216 DLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275
+L+IGT+EN+ET EETSII AL+KF+ERRVSALP+ DSEG LV+I++KFDVINLAAEKT
Sbjct: 445 ELRIGTFENIETATEETSIILALKKFVERRVSALPIVDSEGKLVNIYSKFDVINLAAEKT 504
Query: 276 YTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLS 335
Y NLDV+L+EANEH+ +WFEGV+ C LDETLFT+ME+IVRAEVHRLVV+D+DD V+G++S
Sbjct: 505 YNNLDVSLREANEHRNEWFEGVQSCKLDETLFTIMEKIVRAEVHRLVVIDDDDKVIGIIS 564
Query: 336 LSDILVYLVLKPSDDDIGVDETSS------DSEVPVDPDLASSDDKVFEENEEPRDYVQ 388
LSD+L YLVL+P +D ++ S DS + P A S+ + + E RD +
Sbjct: 565 LSDLLFYLVLRPCGEDANSNKDCSISLRAHDSLLSKTPSSAQSETSLPDGEVEQRDAAE 623
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24648645|ref|NP_732594.1| SNF4/AMP-activated protein kinase gamma subunit, isoform A [Drosophila melanogaster] gi|24648647|ref|NP_536757.2| SNF4/AMP-activated protein kinase gamma subunit, isoform B [Drosophila melanogaster] gi|23171850|gb|AAN13851.1| SNF4/AMP-activated protein kinase gamma subunit, isoform A [Drosophila melanogaster] gi|23171851|gb|AAF55860.2| SNF4/AMP-activated protein kinase gamma subunit, isoform B [Drosophila melanogaster] gi|28317244|gb|AAO39629.1| GH01416p [Drosophila melanogaster] gi|33636507|gb|AAQ23551.1| RE59472p [Drosophila melanogaster] gi|220956698|gb|ACL90892.1| SNF4Agamma-PA [synthetic construct] gi|288558774|gb|ADC53518.1| FI14001p1 [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/389 (65%), Positives = 308/389 (79%), Gaps = 32/389 (8%)
Query: 4 ESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSFLDK 63
+SA +RR+S D ++RR S+G RG LD HHA A+LFRDSRGLPVA FL+K
Sbjct: 402 QSAHMRRASADLEKRRASVGAAGRGLRGDG-TLDPHHA---AILFRDSRGLPVADPFLEK 457
Query: 64 IDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPL 123
++ +DLE+D +QIFVKFF+FHKCYDLIPTSAKLVVFDTQLLVKKAF+ALVYNG+RAAPL
Sbjct: 458 VNLSDLEEDD-SQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPL 516
Query: 124 WDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET------------------ 165
WDS QQ+VGMLTITDFIKILQMYY S + +ME+LEEHKL+T
Sbjct: 517 WDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPD 576
Query: 166 --------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRD 216
LI +IHRLPVID GNVLYILTHKRILRFLFLYIN+LPKP+++ K+LR+
Sbjct: 577 ASLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRE 636
Query: 217 LKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY 276
LKIGTY N+ET E TSII AL+KF+ERRVSALP+ DS+G LVDI+AKFDVINLAAEKTY
Sbjct: 637 LKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTY 696
Query: 277 TNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
+LDV+L++ANEH+ +WFEGV+KC LDE+L+T+MERIVRAEVHRLVVVDE+ V+G++SL
Sbjct: 697 NDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISL 756
Query: 337 SDILVYLVLKPSDDDIGVDETSSDSEVPV 365
SDIL+YLVL+PS + +G E+S + PV
Sbjct: 757 SDILLYLVLRPSGEGVGGSESSLRASDPV 785
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|27228260|gb|AAN85715.1| loechrig isoform II [Drosophila melanogaster] gi|27228266|gb|AAN85718.1| loechrig isoform V [Drosophila melanogaster] gi|27228268|gb|AAN85719.1| loechrig isoform VI [Drosophila melanogaster] gi|27228270|gb|AAN85720.1| loechrig isoform VII [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/392 (65%), Positives = 310/392 (79%), Gaps = 32/392 (8%)
Query: 1 MTRESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSF 60
+ +ESA +RR+S D ++RR S+G RG LD HHA A+LFRDSRGLPVA F
Sbjct: 358 IVKESAHMRRASADLEKRRASVGAAGRGLRGDG-TLDPHHA---AILFRDSRGLPVADPF 413
Query: 61 LDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRA 120
L+K++ +DLE+D +QIFVKFF+FHKCYDLIPTSAKLVVFDTQLLVKKAF+ALVYNG+RA
Sbjct: 414 LEKVNLSDLEEDD-SQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRA 472
Query: 121 APLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN-------------- 166
APLWDS QQ+VGMLTITDFIKILQMYY S + +ME+LEEHKL+T
Sbjct: 473 APLWDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRDVLHNQVMPLVSI 532
Query: 167 ------------LIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKT 213
LI +IHRLPVID GNVLYILTHKRILRFLFLYIN+LPKP+++ K+
Sbjct: 533 GPDASLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKS 592
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
LR+LKIGTY N+ET E TSII AL+KF+ERRVSALP+ DS+G LVDI+AKFDVINLAAE
Sbjct: 593 LRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAE 652
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
KTY +LDV+L++ANEH+ +WFEGV+KC LDE+L+T+MERIVRAEVHRLVVVDE+ V+G+
Sbjct: 653 KTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGI 712
Query: 334 LSLSDILVYLVLKPSDDDIGVDETSSDSEVPV 365
+SLSDIL+YLVL+PS + +G E+S + PV
Sbjct: 713 ISLSDILLYLVLRPSGEGVGGSESSLRASDPV 744
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|4007492|gb|AAC95306.1| SNF4/AMP-activated protein kinase gamma subunit [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/389 (65%), Positives = 308/389 (79%), Gaps = 32/389 (8%)
Query: 4 ESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSFLDK 63
+SA +RR+S D ++RR S+G RG LD HHA A+LFRDSRGLPVA FL+K
Sbjct: 102 QSAHMRRASADLEKRRASVGAAGRGLRGDG-TLDPHHA---AILFRDSRGLPVADPFLEK 157
Query: 64 IDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPL 123
++ +DLE+D +QIFVKFF+FHKCYDLIPTSAKLVVFDTQLLVKKAF+ALVYNG+RAAPL
Sbjct: 158 VNLSDLEEDD-SQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPL 216
Query: 124 WDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET------------------ 165
WDS QQ+VGMLTITDFIKILQMYY S + +ME+LEEHKL+T
Sbjct: 217 WDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRDVLHNQVMPLVSIGPD 276
Query: 166 --------NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRD 216
LI +IHRLPVID GNVLYILTHKRILRFLFLYIN+LPKP+++ K+LR+
Sbjct: 277 ASLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRE 336
Query: 217 LKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY 276
LKIGTY N+ET E TSII AL+KF+ERRVSALP+ DS+G LVDI+AKFDVINLAAEKTY
Sbjct: 337 LKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTY 396
Query: 277 TNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
+LDV+L++ANEH+ +WFEGV+KC LDE+L+T+MERIVRAEVHRLVVVDE+ V+G++SL
Sbjct: 397 NDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISL 456
Query: 337 SDILVYLVLKPSDDDIGVDETSSDSEVPV 365
SDIL+YLVL+PS + +G E+S + PV
Sbjct: 457 SDILLYLVLRPSGEGVGGSESSLRASDPV 485
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24648657|ref|NP_732599.1| SNF4/AMP-activated protein kinase gamma subunit, isoform C [Drosophila melanogaster] gi|24648659|ref|NP_732600.1| SNF4/AMP-activated protein kinase gamma subunit, isoform E [Drosophila melanogaster] gi|116008060|ref|NP_001036737.1| SNF4/AMP-activated protein kinase gamma subunit, isoform K [Drosophila melanogaster] gi|116008062|ref|NP_001036738.1| SNF4/AMP-activated protein kinase gamma subunit, isoform J [Drosophila melanogaster] gi|281362192|ref|NP_001163669.1| SNF4/AMP-activated protein kinase gamma subunit, isoform P [Drosophila melanogaster] gi|281362194|ref|NP_001163670.1| SNF4/AMP-activated protein kinase gamma subunit, isoform Q [Drosophila melanogaster] gi|19527523|gb|AAL89876.1| RE22690p [Drosophila melanogaster] gi|23171855|gb|AAN13852.1| SNF4/AMP-activated protein kinase gamma subunit, isoform C [Drosophila melanogaster] gi|23171856|gb|AAN13853.1| SNF4/AMP-activated protein kinase gamma subunit, isoform E [Drosophila melanogaster] gi|113194808|gb|ABI31188.1| SNF4/AMP-activated protein kinase gamma subunit, isoform K [Drosophila melanogaster] gi|113194809|gb|ABI31189.1| SNF4/AMP-activated protein kinase gamma subunit, isoform J [Drosophila melanogaster] gi|220948160|gb|ACL86623.1| SNF4Agamma-PC [synthetic construct] gi|272477082|gb|ACZ94965.1| SNF4/AMP-activated protein kinase gamma subunit, isoform P [Drosophila melanogaster] gi|272477083|gb|ACZ94966.1| SNF4/AMP-activated protein kinase gamma subunit, isoform Q [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/392 (64%), Positives = 309/392 (78%), Gaps = 32/392 (8%)
Query: 1 MTRESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSF 60
+ +E A +RR+S D ++RR S+G RG LD HHA A+LFRDSRGLPVA F
Sbjct: 358 IVKEGAHMRRASADLEKRRASVGAAGRGLRGDG-TLDPHHA---AILFRDSRGLPVADPF 413
Query: 61 LDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRA 120
L+K++ +DLE+D +QIFVKFF+FHKCYDLIPTSAKLVVFDTQLLVKKAF+ALVYNG+RA
Sbjct: 414 LEKVNLSDLEEDD-SQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRA 472
Query: 121 APLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN-------------- 166
APLWDS QQ+VGMLTITDFIKILQMYY S + +ME+LEEHKL+T
Sbjct: 473 APLWDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSI 532
Query: 167 ------------LIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKT 213
LI +IHRLPVID GNVLYILTHKRILRFLFLYIN+LPKP+++ K+
Sbjct: 533 GPDASLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKS 592
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
LR+LKIGTY N+ET E TSII AL+KF+ERRVSALP+ DS+G LVDI+AKFDVINLAAE
Sbjct: 593 LRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAE 652
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
KTY +LDV+L++ANEH+ +WFEGV+KC LDE+L+T+MERIVRAEVHRLVVVDE+ V+G+
Sbjct: 653 KTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGI 712
Query: 334 LSLSDILVYLVLKPSDDDIGVDETSSDSEVPV 365
+SLSDIL+YLVL+PS + +G E+S + PV
Sbjct: 713 ISLSDILLYLVLRPSGEGVGGSESSLRASDPV 744
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328719052|ref|XP_001943206.2| PREDICTED: hypothetical protein LOC100169066 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/376 (69%), Positives = 306/376 (81%), Gaps = 32/376 (8%)
Query: 4 ESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHHAVNAAVLFRDSRGLPVATSFLDK 63
+ ALLRRSSLDP+ RRLSLGT+++S + S LLD HA A+LFRDSRGLPVA FL+K
Sbjct: 415 QGALLRRSSLDPETRRLSLGTISNSRKNSDGLLDPTHA---AILFRDSRGLPVADPFLEK 471
Query: 64 IDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPL 123
+ DL +D +QIFVKFF+FHK YDLIPTSAKLVVFDTQL+VKKAFFALVYNG+RAAPL
Sbjct: 472 VKIKDLVEDE-SQIFVKFFRFHKTYDLIPTSAKLVVFDTQLIVKKAFFALVYNGVRAAPL 530
Query: 124 WDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET------------------ 165
WD+ QQ+VGMLTITDFI+ILQ YY+SSS +MEELEEHKL+T
Sbjct: 531 WDNKRQQFVGMLTITDFIRILQKYYSSSSSSMEELEEHKLDTWRNELHQERPQELISIGP 590
Query: 166 ---------NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLR 215
LI+ KIHRLPVID GNVLYI+THKRILRFL LYINDLPKP++L+++L
Sbjct: 591 DMSLYFAIQTLINNKIHRLPVIDPATGNVLYIVTHKRILRFLLLYINDLPKPAYLSQSLG 650
Query: 216 DLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275
DLKIGT+EN+ETV+EETSII AL+KF+ERRVSALPM D EG L+DIFAKFDVINLAAE+T
Sbjct: 651 DLKIGTFENIETVSEETSIILALKKFVERRVSALPMVDQEGRLIDIFAKFDVINLAAERT 710
Query: 276 YTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLS 335
Y NLDVTLK+ANE+++DWFEGV+KC L +TLF+VME+IVRAEVHRLVVVD +D V+G+LS
Sbjct: 711 YNNLDVTLKQANEYRSDWFEGVQKCHLTDTLFSVMEKIVRAEVHRLVVVDAEDKVIGILS 770
Query: 336 LSDILVYLVLKPSDDD 351
LSDIL YLVL+PS D
Sbjct: 771 LSDILHYLVLRPSGAD 786
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | ||||||
| FB|FBgn0264357 | 1400 | SNF4Agamma "SNF4/AMP-activated | 0.491 | 0.142 | 0.705 | 3.1e-124 | |
| UNIPROTKB|F1LLY5 | 528 | Prkag2 "Protein Prkag2" [Rattu | 0.451 | 0.346 | 0.597 | 1.7e-90 | |
| MGI|MGI:1336153 | 566 | Prkag2 "protein kinase, AMP-ac | 0.451 | 0.323 | 0.597 | 2.7e-90 | |
| UNIPROTKB|Q9UGJ0 | 569 | PRKAG2 "5'-AMP-activated prote | 0.451 | 0.321 | 0.592 | 9e-90 | |
| RGD|727782 | 326 | Prkag2 "protein kinase, AMP-ac | 0.451 | 0.561 | 0.597 | 3e-89 | |
| UNIPROTKB|F1NXL4 | 565 | PRKAG2 "Uncharacterized protei | 0.476 | 0.341 | 0.570 | 2.7e-88 | |
| UNIPROTKB|F1SSN2 | 331 | PRKAG2 "Uncharacterized protei | 0.451 | 0.552 | 0.597 | 1.5e-87 | |
| UNIPROTKB|F1MH48 | 330 | PRKAG1 "5'-AMP-activated prote | 0.446 | 0.548 | 0.609 | 3.9e-87 | |
| UNIPROTKB|P58108 | 330 | PRKAG1 "5'-AMP-activated prote | 0.446 | 0.548 | 0.609 | 3.9e-87 | |
| UNIPROTKB|Q09138 | 330 | PRKAG1 "5'-AMP-activated prote | 0.446 | 0.548 | 0.609 | 3.9e-87 |
| FB|FBgn0264357 SNF4Agamma "SNF4/AMP-activated protein kinase gamma subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 3.1e-124, Sum P(2) = 3.1e-124
Identities = 141/200 (70%), Positives = 174/200 (87%)
Query: 167 LIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENV 225
LI +IHRLPVID GNVLYILTHKRILRFLFLYIN+LPKP+++ K+LR+LKIGTY N+
Sbjct: 1039 LIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNI 1098
Query: 226 ETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285
ET E TSII AL+KF+ERRVSALP+ DS+G LVDI+AKFDVINLAAEKTY +LDV+L++
Sbjct: 1099 ETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLDVSLRK 1158
Query: 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345
ANEH+ +WFEGV+KC LDE+L+T+MERIVRAEVHRLVVVDE+ V+G++SLSDIL+YLVL
Sbjct: 1159 ANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISLSDILLYLVL 1218
Query: 346 KPSDDDIGVDETSSDSEVPV 365
+PS + +G E+S + PV
Sbjct: 1219 RPSGEGVGGSESSLRASDPV 1238
|
|
| UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 110/184 (59%), Positives = 146/184 (79%)
Query: 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+ + L +L IGTY N
Sbjct: 335 SLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHN 394
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ + T II AL F+ERR+SALP+ D G +VDI++KFDVINLAAEKTY NLD+T+
Sbjct: 395 IAFIHPNTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVT 454
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+A +H++ +FEGV KC ETL T+++RIVRAEVHRLVVV+E D ++G++SLSDIL L+
Sbjct: 455 QALQHRSQYFEGVVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIVGIISLSDILQALI 514
Query: 345 LKPS 348
L P+
Sbjct: 515 LTPA 518
|
|
| MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 110/184 (59%), Positives = 147/184 (79%)
Query: 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+ + L +L IGTY N
Sbjct: 373 SLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHN 432
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ + +T II AL F+ERR+SALP+ D G +VDI++KFDVINLAAEKTY NLD+T+
Sbjct: 433 IAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVT 492
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+A +H++ +FEGV KC ETL T+++RIVRAEVHRLVVV+E D ++G++SLSDIL L+
Sbjct: 493 QALQHRSQYFEGVVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIVGIISLSDILQALI 552
Query: 345 LKPS 348
L P+
Sbjct: 553 LTPA 556
|
|
| UNIPROTKB|Q9UGJ0 PRKAG2 "5'-AMP-activated protein kinase subunit gamma-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 109/184 (59%), Positives = 146/184 (79%)
Query: 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+ + L +L IGTY N
Sbjct: 376 SLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHN 435
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ + +T II AL F+ERR+SALP+ D G +VDI++KFDVINLAAEKTY NLD+T+
Sbjct: 436 IAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVT 495
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+A +H++ +FEGV KC E L T+++RIVRAEVHRLVVV+E D ++G++SLSDIL L+
Sbjct: 496 QALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIVGIISLSDILQALI 555
Query: 345 LKPS 348
L P+
Sbjct: 556 LTPA 559
|
|
| RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 110/184 (59%), Positives = 146/184 (79%)
Query: 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+ + L +L IGTY N
Sbjct: 133 SLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHN 192
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ + T II AL F+ERR+SALP+ D G +VDI++KFDVINLAAEKTY NLD+T+
Sbjct: 193 IAFIHPNTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVT 252
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+A +H++ +FEGV KC ETL T+++RIVRAEVHRLVVV+E D ++G++SLSDIL L+
Sbjct: 253 QALQHRSQYFEGVVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIVGIISLSDILQALI 312
Query: 345 LKPS 348
L P+
Sbjct: 313 LTPA 316
|
|
| UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 113/198 (57%), Positives = 154/198 (77%)
Query: 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++++PKP+F+ K L +L IGTY N
Sbjct: 372 SLIKNKIHRLPVIDPVSGNALYILTHKRILKFLQLFMSEMPKPAFMKKNLDELGIGTYHN 431
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ + +T II AL F+ERR+SALP+ D G +VDI++KFDVINLAAEKTY NLD+T+
Sbjct: 432 IAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVT 491
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+A +H++ +FEGV KC + ETL T+++RIV+AEVHRLVVV+E D ++G++SLSDIL LV
Sbjct: 492 QALQHRSQYFEGVVKCSMLETLETIVDRIVKAEVHRLVVVNEADSIVGIISLSDILQALV 551
Query: 345 LKPSDDDIGVDETSSDSE 362
L P+ G + ++SE
Sbjct: 552 LTPA----GAKQKENESE 565
|
|
| UNIPROTKB|F1SSN2 PRKAG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
Identities = 110/184 (59%), Positives = 146/184 (79%)
Query: 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+LI KIHRLPVID + GN LYILTHKRIL+FL L+++D+PKP+F+ + L L IGTY+N
Sbjct: 138 SLIKNKIHRLPVIDPVSGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDALGIGTYDN 197
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ + +T II AL F+ERRVSALP+ D G +VDI++KFDVINLAAEKTY NLD+T+
Sbjct: 198 IAFIHPDTPIIRALNVFVERRVSALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVT 257
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+A +H++ +FEGV KC E L T+++RIVRAEVHRLVVV+E D ++G++SLSDIL L+
Sbjct: 258 QALQHRSQYFEGVVKCSKLEILETIVDRIVRAEVHRLVVVNEADSIVGIISLSDILQALI 317
Query: 345 LKPS 348
L P+
Sbjct: 318 LTPA 321
|
|
| UNIPROTKB|F1MH48 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 111/182 (60%), Positives = 143/182 (78%)
Query: 165 TNLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
++LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 143 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 202
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 203 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 262
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL T++ R+V AEVHRLVVVDE+D V G++SLSDIL L
Sbjct: 263 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 322
Query: 344 VL 345
VL
Sbjct: 323 VL 324
|
|
| UNIPROTKB|P58108 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 111/182 (60%), Positives = 143/182 (78%)
Query: 165 TNLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
++LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 143 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 202
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 203 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 262
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL T++ R+V AEVHRLVVVDE+D V G++SLSDIL L
Sbjct: 263 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 322
Query: 344 VL 345
VL
Sbjct: 323 VL 324
|
|
| UNIPROTKB|Q09138 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 111/182 (60%), Positives = 143/182 (78%)
Query: 165 TNLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
++LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 143 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 202
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 203 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 262
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL T++ R+V AEVHRLVVVDE+D V G++SLSDIL L
Sbjct: 263 TKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 322
Query: 344 VL 345
VL
Sbjct: 323 VL 324
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q91WG5 | AAKG2_MOUSE | No assigned EC number | 0.5333 | 0.7333 | 0.5247 | yes | N/A |
| P12904 | AAKG_YEAST | No assigned EC number | 0.3210 | 0.6493 | 0.8167 | yes | N/A |
| Q5R4S0 | AAKG2_PONAB | No assigned EC number | 0.5272 | 0.7358 | 0.5687 | yes | N/A |
| Q10343 | AAKG_SCHPO | No assigned EC number | 0.3208 | 0.6938 | 0.8413 | yes | N/A |
| Q9UGJ0 | AAKG2_HUMAN | No assigned EC number | 0.5287 | 0.7358 | 0.5237 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 405 | |||
| cd04641 | 120 | cd04641, CBS_pair_28, The CBS domain, named after | 1e-45 | |
| cd04618 | 98 | cd04618, CBS_pair_5, The CBS domain, named after h | 3e-31 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 1e-14 | |
| cd04642 | 126 | cd04642, CBS_pair_29, The CBS domain, named after | 1e-10 | |
| cd04612 | 111 | cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont | 5e-10 | |
| cd04631 | 125 | cd04631, CBS_pair_18, The CBS domain, named after | 9e-10 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 2e-09 | |
| cd04627 | 123 | cd04627, CBS_pair_14, The CBS domain, named after | 2e-08 | |
| cd04622 | 113 | cd04622, CBS_pair_9, The CBS domain, named after h | 2e-07 | |
| COG3448 | 382 | COG3448, COG3448, CBS-domain-containing membrane p | 2e-07 | |
| cd04593 | 115 | cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con | 2e-07 | |
| cd04636 | 132 | cd04636, CBS_pair_23, The CBS domain, named after | 2e-07 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 3e-07 | |
| cd04623 | 113 | cd04623, CBS_pair_10, The CBS domain, named after | 3e-07 | |
| cd04605 | 110 | cd04605, CBS_pair_MET2_assoc, This cd contains two | 3e-07 | |
| pfam00571 | 57 | pfam00571, CBS, CBS domain | 5e-07 | |
| cd04600 | 124 | cd04600, CBS_pair_HPP_assoc, This cd contains two | 5e-07 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 8e-07 | |
| cd04803 | 122 | cd04803, CBS_pair_15, The CBS domain, named after | 1e-06 | |
| cd04586 | 135 | cd04586, CBS_pair_BON_assoc, This cd contains two | 2e-06 | |
| COG0517 | 117 | COG0517, COG0517, FOG: CBS domain [General functio | 2e-06 | |
| cd04633 | 121 | cd04633, CBS_pair_20, The CBS domain, named after | 2e-06 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 2e-06 | |
| cd04800 | 111 | cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c | 2e-06 | |
| smart00116 | 49 | smart00116, CBS, Domain in cystathionine beta-synt | 2e-06 | |
| cd04611 | 111 | cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co | 3e-06 | |
| cd04585 | 122 | cd04585, CBS_pair_ACT_assoc2, This cd contains two | 5e-06 | |
| cd04629 | 114 | cd04629, CBS_pair_16, The CBS domain, named after | 5e-06 | |
| smart00116 | 49 | smart00116, CBS, Domain in cystathionine beta-synt | 9e-06 | |
| cd04601 | 110 | cd04601, CBS_pair_IMPDH, This cd contains two tand | 2e-05 | |
| cd04801 | 114 | cd04801, CBS_pair_M50_like, This cd contains two t | 2e-05 | |
| cd04631 | 125 | cd04631, CBS_pair_18, The CBS domain, named after | 3e-05 | |
| pfam00571 | 57 | pfam00571, CBS, CBS domain | 4e-05 | |
| cd04624 | 112 | cd04624, CBS_pair_11, The CBS domain, named after | 9e-05 | |
| cd04623 | 113 | cd04623, CBS_pair_10, The CBS domain, named after | 1e-04 | |
| cd04584 | 121 | cd04584, CBS_pair_ACT_assoc, This cd contains two | 1e-04 | |
| cd04600 | 124 | cd04600, CBS_pair_HPP_assoc, This cd contains two | 2e-04 | |
| cd04585 | 122 | cd04585, CBS_pair_ACT_assoc2, This cd contains two | 2e-04 | |
| smart00116 | 49 | smart00116, CBS, Domain in cystathionine beta-synt | 6e-04 | |
| cd04589 | 111 | cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd | 6e-04 | |
| cd04588 | 110 | cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c | 7e-04 | |
| COG2524 | 294 | COG2524, COG2524, Predicted transcriptional regula | 8e-04 | |
| COG3448 | 382 | COG3448, COG3448, CBS-domain-containing membrane p | 0.002 | |
| cd04636 | 132 | cd04636, CBS_pair_23, The CBS domain, named after | 0.002 | |
| cd04639 | 111 | cd04639, CBS_pair_26, The CBS domain, named after | 0.002 | |
| cd04583 | 109 | cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai | 0.004 |
| >gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 1e-45
Identities = 61/119 (51%), Positives = 83/119 (69%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ T +T +I L +ERRVSALP+ D G +VD++++FDVINLA E Y NLD+T+
Sbjct: 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTV 61
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342
EA E ++ FEGV C D+ L T+ + IV+A VHRLVVVDE+ V G++SLSDIL +
Sbjct: 62 GEALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120 |
| >gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-31
Identities = 60/103 (58%), Positives = 72/103 (69%), Gaps = 6/103 (5%)
Query: 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSIT 154
+KLVVFDT+L VKKAF ALV NGIR+APLWDS QQ+VGMLTITDFI IL++ +
Sbjct: 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILRLVSIHPERS 60
Query: 155 MEELEEHKLETNLIDYKIHRLPVID-EMGNVLYILTHKRILRF 196
+ + L+ KIHRLPVID G LYILT +RIL+F
Sbjct: 61 LFDAALL-----LLKNKIHRLPVIDPSTGTGLYILTSRRILKF 98
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-14
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT 282
+V TV+ + ++ ALR LE +S LP+ D +G LV I + D++ AE L
Sbjct: 1 RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60
Query: 283 LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
V D +L E ++ + RL VVD++ ++G+++ SDIL
Sbjct: 61 GDVMTRD-------VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
V ++ + ++ A + + +S LP+ D +G L+ + D+ L L T+
Sbjct: 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTIT 62
Query: 285 EANEHKTDWFEGVEK------CLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSD 338
+ K C TL V+ ++V +VHR+ VVDE+ +GV++L+D
Sbjct: 63 FKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTD 122
Query: 339 IL 340
I+
Sbjct: 123 II 124
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126 |
| >gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-10
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V TV + ++ L R P+ D +G LV I D+ + AE + T+
Sbjct: 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD-DGRLVGIVTLADIRRVPAEG----REATV 56
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
+ D DETL ++R+ ++ RL VVD+ ++G++S SD+L
Sbjct: 57 LVGDVMTRD----PVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-10
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 168 IDYKIHRLPVIDE-MGNVLYILTHKRILRFL-----FLYINDLPKPSFLNKTLRDLKIGT 221
+ RLPV+DE G ++ I+T IL++L F I +N+ +R +
Sbjct: 20 VRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMT-- 77
Query: 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
NV T+ + SI A LE+RV LP+ D +G LV I + D++
Sbjct: 78 -RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
++++ I LPV+D+ G ++ I+T + +LR L T+ D+ +V
Sbjct: 19 MLEHGISGLPVVDDDGRLVGIVTERDLLRAL------AEGGLDPLVTVGDVMT---RDVV 69
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
TV+ +TS+ A LE + LP+ D EG LV I + D++
Sbjct: 70 TVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 172 IHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPSFLNK-TLRDLKIGTYENVETVA 229
IHR+ V +E G V+ IL+ +R++ FL+ P L LRDL IGT +V ++
Sbjct: 24 IHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGT-SDVISIN 82
Query: 230 EETSIIHALRKFLERRVSALPMTDSEGHLV 259
+ +I AL +S++ + D++G+L+
Sbjct: 83 GDQPLIDALHLMHNEGISSVAVVDNQGNLI 112
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123 |
| >gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-07
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFD-VINLAAEKTYTNLDVT 282
+V TV+ + +I A R E V ALP+ + LV I D V+ AE D
Sbjct: 2 DVVTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAE----GRDPD 56
Query: 283 LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341
+ T GV D+ + + +V RL VVD+D ++G++SL D+
Sbjct: 57 TTTVGDVMT---RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V TV+ +TSI HA + E R+ ALP+ D LV I + D L +
Sbjct: 254 DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRD---LLKHARPSPFQRLR 310
Query: 284 KEANEHKTDWFEGVEKCLLDET-LFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342
+ +T ++ R+ +H L V+D ++G++S +D++
Sbjct: 311 FLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAA 370
Query: 343 L 343
L
Sbjct: 371 L 371
|
Length = 382 |
| >gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN-LAAEKTYTNLDVTL 283
++ T + A + +E + + + D +G +V I D++ L A++ V
Sbjct: 3 PPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDE 62
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD--HVLGVLSLSDILV 341
T DE L ++R+ + +L VVD + VLG+L+ ++L+
Sbjct: 63 VATPPLLTVH--------PDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115 |
| >gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
V TV ++ ++ + L ++S +P+ D+EG +V I ++ D+I K Y +
Sbjct: 3 VITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI----RKIYKGKGLFYV 58
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
E K LL + + +M + V + VDED + V +
Sbjct: 59 TLLYSVIFLDESKIKKLLGKKVEEIMTKKV-------ITVDEDTTIEDVARI 103
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
D+T+ + ++ + L VVD+D ++G+++ D+L L D + V + +
Sbjct: 9 DDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDV 68
Query: 363 VPVDPD 368
V V PD
Sbjct: 69 VTVSPD 74
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-07
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V TV + ++ A + E+ + A+ + D G LV IF++ D++ A + + LD +
Sbjct: 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPV 61
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
E V D+T+ M + L VVD ++G++S+ D++
Sbjct: 62 SEIMTRN------VITVTPDDTVDEAMALMTERRFRHLPVVDGGK-LVGIVSIGDVV 111
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT 282
V T++E+ SI A + +E ++ LP+ D +G LV I +D+ A + D+
Sbjct: 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKKSVEDIM 61
Query: 283 LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
+ V DE + ++ R + L VVD ++ V+G+++ DI
Sbjct: 62 TRN-----------VITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDI 107
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110 |
| >gnl|CDD|201313 pfam00571, CBS, CBS domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-07
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
D +L +E + + RL VVDED ++G+++L D+L L+
Sbjct: 15 DTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALL 56
|
CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57 |
| >gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-07
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 31/134 (23%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V TV +TS+ A R+ ALP+ D + LV I + D++ A L L
Sbjct: 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRL 62
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRA-----------------EVHRLVVVDE 326
+ ++ ET+ +M V H + VVDE
Sbjct: 63 RGRDKP--------------ETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE 108
Query: 327 DDHVLGVLSLSDIL 340
D ++G+++ +D++
Sbjct: 109 DRRLVGIVTQTDLI 122
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITM 155
+V V +A ++ +GI P+ D + VG++T D ++ L +T+
Sbjct: 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60
Query: 156 EELEEHKLET------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRF 196
++ + T ++++ I RLPV+D+ G ++ I+T ILR
Sbjct: 61 GDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 171 KIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--ENVETV 228
+I LPV++E G ++ +LT + +LR ++D + S RD+ + +V TV
Sbjct: 23 RIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESL--TKERDVPVAEVMKTDVLTV 80
Query: 229 AEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL 270
+T + A +E ++ LP+ D +G LV I + D + L
Sbjct: 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122 |
| >gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 38/142 (26%)
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
V TV+ ETS+ A R L+ +S LP+ D +G LV I ++ D++ A T
Sbjct: 4 VVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGT--------- 54
Query: 285 EANEHKTDW----FEGVEKCLLDETLFT------VMERIVRA--------------EVHR 320
E + G E+ VM R V E HR
Sbjct: 55 ---ERRRARWLDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHR 111
Query: 321 L--VVVDEDDHVLGVLSLSDIL 340
+ V V ++G++S +D+L
Sbjct: 112 IKRVPVVRGGRLVGIVSRADLL 133
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135 |
| >gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V TV +TS+ AL E VSA+P+ D +G LV I + D++ A L V
Sbjct: 8 DVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRLLPV-- 64
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVR-AEVHRLVVVDEDD-HVLGVLSLSDIL 340
KE V D L +E +V ++ RL VVD+D ++G+++LSDIL
Sbjct: 65 KEVMTKP------VVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117
|
Length = 117 |
| >gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFL----NKTLRDLKIGTY 222
++D+ I RLPVI+ G ++ I+T K I L + + N + D I T
Sbjct: 19 MLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD--IMTR 75
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL 270
V T+ +TS+ LE + LP+ D +G LV I + D++
Sbjct: 76 -PVITIEPDTSVSDVASLMLENNIGGLPVVD-DGKLVGIVTRTDILRY 121
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 169 DYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETV 228
Y I +PV+DE G ++ I+T R +RF DL ++ + ++ T E + TV
Sbjct: 115 RYGISGVPVVDENGKLVGIIT-NRDVRF----ETDL------SQPVSEVM--TKERLVTV 161
Query: 229 AEETSIIHALRKFLERRVSALPMTDSEGHLV 259
E T++ AL E R+ LP+ D G L
Sbjct: 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLK 192
|
Length = 486 |
| >gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN-LAAEKTYTNLDVT 282
T + +T+I A R E RVS+L + D +G LV I D+ N + AE LD
Sbjct: 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD-DGRLVGIVTDRDLRNRVVAEG----LDPD 56
Query: 283 LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342
+E T D T+F + ++ +H L VVD D ++GV+S +D+L
Sbjct: 57 T-PVSEVMT---APPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVISATDLLRL 111
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
D TL +E + + RL VVDE+ ++G+++ DI+ L
Sbjct: 8 DTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKAL 48
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49 |
| >gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-06
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+ T +TS+ A + ERR+S++ + D + I + D++ L A +L +
Sbjct: 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGR-PLGIVTERDILRLLAS--GPDLQTPV 58
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
E + D +L+ + + + LVVVD+D +LG+LS +D+L
Sbjct: 59 GEVMSSP------LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-06
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 171 KIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--ENVETV 228
I RLPV+D G ++ I+T + + L L L +K+ + TV
Sbjct: 23 SIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWE-LYYLLSKIKVSDIMTRDPITV 80
Query: 229 AEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL 270
+ + S+ A LER++S LP+ D +G LV I + D+
Sbjct: 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122 |
| >gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 5e-06
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
T + S+ A+ K L+ ++S P+ D G+LV ++ D + E +Y V
Sbjct: 5 TFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRD 64
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
V D+++ + + +++A+ R VVD D ++G +S D+L
Sbjct: 65 IMTTE-----VLTVSPDDSIVDLAQLMLKAKPKRYPVVD-DGKLVGQISRRDVL 112
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114 |
| >gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-06
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272
+V TV+ +T++ AL E + LP+ D EG LV I + D+I A
Sbjct: 1 DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKALA 49
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49 |
| >gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 2e-05
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 170 YKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229
Y I LPV+D+ G ++ I+T+ R LRF DL +K + + + T EN+ T
Sbjct: 23 YGISGLPVVDDDGKLVGIVTN-RDLRF----ETDL------DKPVSE--VMTPENLLTTV 69
Query: 230 EETSIIHALRKFLERRVSALPMTDSEGHLV 259
E TS+ AL E ++ LP+ D EG L
Sbjct: 70 EGTSLEEALELLHEHKIEKLPVVDDEGKLK 99
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110 |
| >gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 224 NVETVAEETSIIHALRKFLERRV-----SALPMTDSEGHLVDIFAKFDVINLAAEKTYTN 278
+ TV + LR+F+ V + D+EG V I + D+ + +
Sbjct: 2 DFPTVPAHLT----LREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQ- 56
Query: 279 LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSD 338
T+ + + L +E+L V++ + + L VV++ V+G+++ +D
Sbjct: 57 --TTVIQV----MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEAD 110
Query: 339 IL 340
+L
Sbjct: 111 LL 112
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114 |
| >gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 13/129 (10%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTD-SEGHLVDIFAKFDVIN-LAAEKTYTNLD 280
++V TV T I+ A + + LP+ D G LV I D++ L + + +
Sbjct: 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIK 60
Query: 281 VTLKEA-------NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
+ + + + ++E+ V L VVD+D ++G+
Sbjct: 61 TGNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGG----LPVVDDDGKLVGI 116
Query: 334 LSLSDILVY 342
++ D+L
Sbjct: 117 VTERDLLKA 125
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125 |
| >gnl|CDD|201313 pfam00571, CBS, CBS domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-05
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
+V TV +TS+ AL E +S LP+ D +G LV I D++ E
Sbjct: 8 DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57
|
CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57 |
| >gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 9e-05
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V TV +TSI A + E V ++ + D + + I + D++ A +LD +
Sbjct: 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI--DLDTPV 59
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
E + DE + + + + + +VVD+ ++GV+S+ D++
Sbjct: 60 SEIMTRDLVTVDP------DEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112 |
| >gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
+ + I + V+D+ G ++ I + + I+R + L S L+ + ++ NV
Sbjct: 19 MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALR-----GASALDTPVSEI---MTRNVI 70
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDI 261
TV + ++ A+ ERR LP+ D G LV I
Sbjct: 71 TVTPDDTVDEAMALMTERRFRHLPVVD-GGKLVGI 104
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRF---LFLYINDLPKPSFLNKTLRDLKIGTYE 223
+ ++KI LPV+DE G ++ I+T + + F +++ L ++++ +
Sbjct: 19 MREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMT---K 75
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
+V TV ++ A E R+ LP+ + +G LV I + D++
Sbjct: 76 DVITVHPLDTVEEAALLMREHRIGCLPVVE-DGRLVGIITETDLL 119
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121 |
| >gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILT--------HKRILRFLFLYINDLPKPSFLNKTLRDLK 218
L ++I LPV+D ++ I+T R L + KP + +
Sbjct: 20 LRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMS--- 76
Query: 219 IGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
V TV +T I + + +P+ D + LV I + D+I
Sbjct: 77 ----PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124 |
| >gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDV- 281
+N TV +TS++ AL+ E + LP+ D G LV I D + LA+ T LD+
Sbjct: 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRD-LKLASPSKATTLDIW 58
Query: 282 -TLKEANEHKTDWFEGVEKCL--------LDETLFTVMERIVRAEVHRLVVVDEDDHVLG 332
++ K V + D ++ E ++ ++ L VVD+ ++G
Sbjct: 59 ELYYLLSKIK------VSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVG 112
Query: 333 VLSLSDIL 340
+++ SD+
Sbjct: 113 IITESDLF 120
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122 |
| >gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 6e-04
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 146 MYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
+ S T+EE E L + I RLPV+DE G ++ I+T + I++ L
Sbjct: 2 VVTVSPDTTLEEALE-----LLRENGIRRLPVVDEEGRLVGIVTRRDIIKAL 48
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49 |
| >gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 6e-04
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 27/125 (21%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL-DVTLKE 285
V TSI A R E AL + D + L I T T+L D L +
Sbjct: 5 IVDASTSIRDAARLMREHGADALLVRDGDPRL-GIV------------TRTDLLDAVLLD 51
Query: 286 ANEHKTDWFEGVEKCL--------LDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLS 337
T V + D+ LF + + R +HR VVV E V+GVL +
Sbjct: 52 GLPSSTP----VGEIATFPLITVDPDDFLFNALLLMTRHRIHR-VVVREGGEVVGVLEQT 106
Query: 338 DILVY 342
D+L +
Sbjct: 107 DLLSF 111
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
+ IH PV+D+ G ++ I+T I + L + + T ++V
Sbjct: 19 FNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIA---RGLE-------LAKVKDVMT-KDVI 66
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL 270
T+ E+ + A+R + V L +TD EG V I + D++
Sbjct: 67 TIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110 |
| >gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+ TV + ++ A + F E+ + P+ D + +V I D+ A NLD +
Sbjct: 181 KLITVRPDDTLREAAKLFYEKGIRGAPVVD-DDKIVGIITLSDIAKAIAN---GNLDAKV 236
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
+ DE ++ + + + V RL+V D + +G+++ +DIL
Sbjct: 237 SDYMRKNVITINE------DEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDIL 287
|
Length = 294 |
| >gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN-- 224
L +++I LPV+DE ++ I+T + +L+ + P P + LR +
Sbjct: 271 LQEHRIKALPVLDEHRRLVGIVTQRDLLK------HARPSPFQRLRFLRPPTVKGIMTTP 324
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL 279
V TV +T + + + + + ALP+ D+ G LV I ++ D+I +L
Sbjct: 325 VVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQHL 379
|
Length = 382 |
| >gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLF-----LYINDLPKPSFL-NKTLRDLKIG 220
L+ KI +PV+D G V+ I++ ++R ++ Y+ L FL ++ L
Sbjct: 19 LLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGK 78
Query: 221 TYE-----NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
E V TV E+T+I R ++ + LP+ D G LV I ++ D+I
Sbjct: 79 KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDII 130
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132 |
| >gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 250 PMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTV 309
P+ D +GHLV + + D+I AE + TL V
Sbjct: 28 PVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRR---------DFPTVSPSATLDAV 78
Query: 310 MERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
+ + + + VVD ++G+++L ++
Sbjct: 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENV 108
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111 |
| >gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.004
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLV 259
E+V TV + S+ L L+R +P+ D +G LV
Sbjct: 62 EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLV 98
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| KOG1764|consensus | 381 | 100.0 | ||
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.89 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.78 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.73 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.72 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.66 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.66 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.66 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.64 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.62 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.62 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.61 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 99.6 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.59 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.59 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.59 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.59 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.58 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.58 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.58 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.58 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.57 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.57 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.57 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.56 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.56 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 99.56 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.56 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.55 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.55 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.55 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.55 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.55 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 99.54 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.54 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.54 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.54 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.53 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.53 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.53 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 99.52 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.52 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 99.52 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.52 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.52 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.52 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.52 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 99.51 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.51 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 99.51 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.51 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.51 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 99.51 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.5 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 99.5 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.5 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.5 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 99.5 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.5 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.5 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.49 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.48 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.48 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 99.48 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.48 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 99.47 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.47 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.46 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.46 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 99.45 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.45 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 99.45 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 99.45 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 99.45 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.44 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.42 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 99.42 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.42 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 99.42 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.42 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.42 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.41 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 99.41 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 99.41 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 99.41 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.39 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.39 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.38 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.38 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 99.37 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.37 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.37 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.37 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.36 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 99.36 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 99.36 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.35 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 99.35 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.34 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.34 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 99.33 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 99.33 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.33 | |
| KOG1764|consensus | 381 | 99.32 | ||
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.31 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.31 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.31 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.3 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.3 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.29 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.29 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 99.29 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.29 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.29 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.28 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.27 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.27 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 99.27 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.26 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.26 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.26 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.25 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.25 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.25 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 99.24 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.24 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.24 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.24 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.24 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.24 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.23 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.23 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.22 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.22 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.22 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.22 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 99.22 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 99.21 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.21 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.21 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.21 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.21 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.2 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 99.2 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.2 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.2 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.2 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 99.19 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 99.18 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.18 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.18 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 99.17 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.17 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 99.16 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.16 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 99.16 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 99.15 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 99.15 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 99.14 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 99.13 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 99.13 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.12 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 99.12 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 99.11 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.11 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.1 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 99.1 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.09 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 99.09 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 99.08 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 99.07 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.07 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.06 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.06 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 99.06 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 99.05 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 99.01 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 99.0 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 98.98 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.97 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 98.96 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 98.94 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 98.93 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.82 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 98.81 | |
| KOG2550|consensus | 503 | 98.79 | ||
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 98.73 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 98.61 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 98.45 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 98.42 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 98.4 | |
| KOG0474|consensus | 762 | 98.38 | ||
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.24 | |
| KOG0474|consensus | 762 | 98.2 | ||
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 98.12 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 98.06 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 98.02 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 98.02 | |
| KOG2550|consensus | 503 | 97.9 | ||
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.77 | |
| KOG0475|consensus | 696 | 97.51 | ||
| KOG0475|consensus | 696 | 96.92 | ||
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 96.53 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 95.38 | |
| KOG0476|consensus | 931 | 95.32 | ||
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 95.2 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 93.91 | |
| KOG0476|consensus | 931 | 92.7 |
| >KOG1764|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=281.75 Aligned_cols=301 Identities=53% Similarity=0.815 Sum_probs=262.5
Q ss_pred CCCcccCCcCcccchhhhhccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCee
Q psy744 52 RGLPVATSFLDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131 (405)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~ 131 (405)
..+|....+....+............|.+|+..++||+++|++.++++++..+++.+|+..|..++++++|+||...+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~ 112 (381)
T KOG1764|consen 33 SRRPEASPFLVSENEVETAESNAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQF 112 (381)
T ss_pred hccccccccccccccccccccchhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcccee
Confidence 33444444444445555556666778999999999999999999999999999999999999999999999999998999
Q ss_pred eeEEeHHHHHHHHHHhhCCCC--CCHHHHhhc------------------c------------HHHHHHhcCCCEEEEEe
Q psy744 132 VGMLTITDFIKILQMYYTSSS--ITMEELEEH------------------K------------LETNLIDYKIHRLPVID 179 (405)
Q Consensus 132 ~GilT~~Dil~~l~~~~~~~~--~~~~~l~~~------------------~------------i~~~l~~~~i~~lpVvd 179 (405)
+|++|+.||+..+..++..+. .....+... + ....+.+++++++||+|
T Consensus 113 ~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d 192 (381)
T KOG1764|consen 113 VGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID 192 (381)
T ss_pred EEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeec
Confidence 999999999999887776411 111111100 0 01178999999999999
Q ss_pred -CCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcE
Q psy744 180 -EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHL 258 (405)
Q Consensus 180 -~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 258 (405)
+.+++.+++|++.|+++++.+.+.++...++..++.++.++.+.++..+..++++.+|++.|.+++++++||||..|+.
T Consensus 193 ~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~ 272 (381)
T KOG1764|consen 193 PETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKK 272 (381)
T ss_pred ccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce
Confidence 7889999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHHhccccchhhh-HHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Q psy744 259 VDIFAKFDVINLAAEKTYTNLDVT-LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLS 337 (405)
Q Consensus 259 vGivt~~Dl~~~~~~~~~~~l~~~-v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~ 337 (405)
+|+++..|+.....+..+..++.. +.+....+.....++++|.++++|.++++.|..+++|+++|||++|.++|+||.+
T Consensus 273 v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLs 352 (381)
T KOG1764|consen 273 VGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLS 352 (381)
T ss_pred ecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHH
Confidence 999999999999999988888888 8888877777778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCC
Q psy744 338 DILVYLVLKPSDDDI 352 (405)
Q Consensus 338 DIl~~l~~~~~~~~~ 352 (405)
||+.++...+.+...
T Consensus 353 Dil~~l~~~p~~~~~ 367 (381)
T KOG1764|consen 353 DILSYLVLTPSGGTP 367 (381)
T ss_pred HHHHHHHhCccCCCC
Confidence 999999988876543
|
|
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=187.34 Aligned_cols=165 Identities=25% Similarity=0.346 Sum_probs=143.8
Q ss_pred hhhhhcCCCCcccCCcCcccchhhhhccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeE
Q psy744 45 AVLFRDSRGLPVATSFLDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLW 124 (405)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~ 124 (405)
++|.+-+++++.+.+ ||+.+++++|+|+|+|.++..+|.|+| |++|+++.+++++.+|+++|.+|+++++||+
T Consensus 210 ~aL~~~~E~lDIdrd-----dLe~llr~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~ 282 (382)
T COG3448 210 AALQRLGETLDIDRD-----DLERLLRETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVL 282 (382)
T ss_pred HHHHhcCceecCCHH-----HHHHHHHHHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccc
Confidence 567777889998887 999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCC
Q psy744 125 DSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDL 204 (405)
Q Consensus 125 d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~ 204 (405)
|++ .+++|++|.+|+++.... .| ...+ +
T Consensus 283 d~~-~rl~GiVt~~dl~~~a~~---~p---~qrl------------------------------------r--------- 310 (382)
T COG3448 283 DEH-RRLVGIVTQRDLLKHARP---SP---FQRL------------------------------------R--------- 310 (382)
T ss_pred ccc-cceeeeeeHHHHhhccCc---ch---HHHh------------------------------------h---------
Confidence 998 899999999999954321 00 0000 0
Q ss_pred CCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 205 PKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 205 ~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.+...+++.+| ..++.++.++++..+++..+.+.+.+++||+|++|+++||||+.|++.++...
T Consensus 311 ---~~~~~~vk~im---t~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 311 ---FLRPPTVKGIM---TTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ---ccCCCcccccc---cCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 11245788888 47999999999999999999999999999999999999999999999887754
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=153.48 Aligned_cols=121 Identities=22% Similarity=0.407 Sum_probs=112.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
+.+++++| .++++++.+++|+.++.++|.++++++.||+|++ +++|++|.+|+..++.++ .++..|+++
T Consensus 171 k~~V~~~~---s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g---~~~~kV~~~---- 239 (294)
T COG2524 171 KEKVKNLM---SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG---NLDAKVSDY---- 239 (294)
T ss_pred cchhhhhc---cCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC---CccccHHHH----
Confidence 55788888 5899999999999999999999999999999965 999999999999999987 456777777
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.++++++.+|+.+.+|+++|..+++.+|.|+|.+|+++|+||++|||+.++
T Consensus 240 --M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 240 --MRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred --hccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 6689999999999999999999999999999999999999999999999986
|
|
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=131.86 Aligned_cols=119 Identities=51% Similarity=0.830 Sum_probs=99.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|++.....+.......++.+.+.....|..++.++.++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 57889999999999999999999999999989999999999999987654422222223444333334466778999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+++.+.+||+|++|+++|+||++|++++
T Consensus 82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 999999999999999999999988999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-17 Score=147.17 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=137.4
Q ss_pred CeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCcc
Q psy744 129 QQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPS 208 (405)
Q Consensus 129 ~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~ 208 (405)
++-+| ++..|+-..+..+.+.-++..++++.. +.+ .+.- .+.. .
T Consensus 198 ~~rvg-fs~~Dld~aL~~~~E~lDIdrddLe~l-----lr~---------------------~elq-a~~R--------~ 241 (382)
T COG3448 198 SQRVG-FSSEDLDAALQRLGETLDIDRDDLERL-----LRE---------------------TELQ-ALRR--------R 241 (382)
T ss_pred hhccC-CCHHHHHHHHHhcCceecCCHHHHHHH-----HHH---------------------HHHH-HHHH--------H
Confidence 45677 899999999998888777777777631 110 0110 1111 1
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
....+..++| .++++++..++++.+|.++|.++++..+||+|++.+++|+|+++|+++......+..+..- .--.
T Consensus 242 ~~~LtcadIM---SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~--~~~~ 316 (382)
T COG3448 242 MGELTCADIM---SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFL--RPPT 316 (382)
T ss_pred hccccHHHhc---CccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhcc--CCCc
Confidence 1234677888 5999999999999999999999999999999999999999999999986554332222100 0002
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
++..|+.++.++.++++..+++-.+.+.+.|++||+|++|+++||||.+|++.+++.+
T Consensus 317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 3455888999999999999999999999999999999999999999999999999854
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=137.78 Aligned_cols=122 Identities=30% Similarity=0.409 Sum_probs=108.9
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.++| ++++++++++.|+++|.+.+.+++++++||+|.+ +++|++|.+|+...+... .
T Consensus 171 k~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g--~------------- 231 (294)
T COG2524 171 KEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANG--N------------- 231 (294)
T ss_pred cchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcC--C-------------
Confidence 34667787 8999999999999999999999999999999994 999999999999777643 0
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
.+.+++++| .++++++..|+.+.||+++|..
T Consensus 232 ----------------------------------------------~~~kV~~~M---~k~vitI~eDe~i~dAir~M~~ 262 (294)
T COG2524 232 ----------------------------------------------LDAKVSDYM---RKNVITINEDEDIYDAIRLMNK 262 (294)
T ss_pred ----------------------------------------------ccccHHHHh---ccCCceEcCchhHHHHHHHHHh
Confidence 144788888 4899999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
++++++.|+|.+|+++|++|..|+++.+..
T Consensus 263 ~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 263 NNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred cCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 999999999999999999999999987653
|
|
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=122.05 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=96.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
.+.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++............++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~~ 75 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENV------MTRAVVSCRPG 75 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHH------hcCCCeeECCC
Confidence 367889999999999999999999999999999999999999998866541112234456665 44688899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++..++||+|++|+++|+||.+|+++
T Consensus 76 ~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 76 DLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999999999998899999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=121.64 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=86.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.++++++++++.++.+.|.+++++++||+|++ |+++|++|..|+.+... +.++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------~~~v~~ 57 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------LVSIHP 57 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------eEEeCC
Confidence 47899999999999999999999999999974 89999999999976321 578999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiIt~~DIl~ 341 (405)
++++.+|++.|.+++++++||+|++ |+++|+||.+||++
T Consensus 58 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 58 ERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred CCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999999999987 89999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=120.45 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=93.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+...+. + .+.++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-~--~~~~v~~~------~~~~~~~v~~~ 72 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND-Y--ETLKVCEV------YIVPVPIVYCD 72 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc-c--cccChhhe------eecCCcEECCC
Confidence 467889999999999999999999999999889999999999998743221 1 12345554 55678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 73 ~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 73 SKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999999999998899999999999985
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-15 Score=121.52 Aligned_cols=122 Identities=20% Similarity=0.288 Sum_probs=103.6
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
.-+.+.+| .++++.+.+++++.+++++|.+++++.+||+++ ++++|-||..++.++..++..+-.+..++++
T Consensus 64 ~ita~~iM---~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~v---- 135 (187)
T COG3620 64 RITAKTIM---HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREV---- 135 (187)
T ss_pred eEeHhhhc---cCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHH----
Confidence 33667778 589999999999999999999999999999996 8999999999999998776433234556665
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|..+++++++++++..+..++..++. +.|+ ++|+++||||+.||++.+.+
T Consensus 136 --M~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 136 --MGEPFPTVSPDESLNVISQLLEEHPA--VLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred --hcCCCCcCCCCCCHHHHHHHHhhCCe--EEEE-eCCceEEEEeHHHHHHHHhc
Confidence 66899999999999999888887765 6677 48999999999999998863
|
|
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=118.27 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=95.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++.+++++.++++.|.+.+++.+||+|++ |+++|+++..|+++.+..........++.++ |..++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~ 75 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEI------MTKPLISVSP 75 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHH------hcCCCeeECC
Confidence 56889999999999999999999999999987 8999999999999866543222223456665 3467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 76 DMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999999999996 99999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=137.64 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=127.6
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|... .++++++.++++.++++.+.+.+++++||++++ ++++|+|+.+|++....... . ...+.++
T Consensus 66 ~~~V~diMtpr-~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~-~--~~~l~~l--- 138 (292)
T PRK15094 66 DQRVRDIMIPR-SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA-E--AFSMDKV--- 138 (292)
T ss_pred CCEEeEEccch-HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-C--cCCHHHH---
Confidence 56899999522 369999999999999999999999999999876 78999999999987553221 1 1234454
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDL 369 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (405)
| +++.++++++++.++++.|.+++.+.+||+|++|.++|+||++||++.+.++...+.... .......
T Consensus 139 ---~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~--------~~~~i~~ 206 (292)
T PRK15094 139 ---L-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEE--------DDIDFRQ 206 (292)
T ss_pred ---c-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccc--------cccccEE
Confidence 2 456689999999999999999999999999999999999999999999996543321110 0011122
Q ss_pred cCCcccccccCCccccccccCccccccc
Q psy744 370 ASSDDKVFEENEEPRDYVQNSCWGEVPV 397 (405)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (405)
..+....+.+...++++++..++. +|.
T Consensus 207 ~~~~~~~v~G~~~l~dl~~~l~~~-l~~ 233 (292)
T PRK15094 207 LSRHTWTVRALASIEDFNEAFGTH-FSD 233 (292)
T ss_pred eCCCeEEEEeccCHHHHHHHhCCC-CCC
Confidence 334456777888888888888774 454
|
|
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-14 Score=146.28 Aligned_cols=218 Identities=19% Similarity=0.225 Sum_probs=149.7
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC-----CCCCCHHHHh
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT-----SSSITMEELE 159 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~-----~~~~~~~~l~ 159 (405)
.++.|+| ..+++++++++++.+|++.|.+++++.+||+|++ ++++|++|..|+.+.+..... ....+..++.
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 5788998 6789999999999999999999999999999987 899999999999987664332 1112223322
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCC-EEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGN-VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHAL 238 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~-vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~ 238 (405)
+. +...++..+-. . -...++ ++|-.....+..++. ...++.+.... ++.
T Consensus 145 ~~-L~~~~l~~~~~-~--~~~~~~~~v~a~~~~~~~~~~~-----------------------~~~lvi~gdr~---d~~ 194 (546)
T PRK14869 145 RT-LDGEVLVGAEE-D--KVEEGKVVVAAMAPESLLERIE-----------------------EGDIVIVGDRE---DIQ 194 (546)
T ss_pred Hh-cCcEEEecCcc-c--ccccccEEEEEcCHHHHHHhcc-----------------------CCCEEEEcCcH---HHH
Confidence 10 00000000000 0 000111 233333333322111 12344443333 445
Q ss_pred HHHHhcCCCEEEEECCC------------CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCc-cCceEecCCCC
Q psy744 239 RKFLERRVSALPMTDSE------------GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWF-EGVEKCLLDET 305 (405)
Q Consensus 239 ~~m~~~~~~~lpVvd~~------------g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~-~~~~~v~~~~~ 305 (405)
..+.+.+++++.|+... +.+.+++|..|.......- ....++.++ |. +++.+++++++
T Consensus 195 ~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l---~~~~~V~~i------M~~~~~~~~~~~~~ 265 (546)
T PRK14869 195 LAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLI---NQSIPVSYI------MTTEDLVTFSKDDY 265 (546)
T ss_pred HHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHh---hcCCCHHHh------ccCCCcEEECCCCc
Confidence 56788899999887643 2588999999988776543 234566666 66 78999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 306 LFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 306 l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+.++.+.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus 266 ~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 266 LEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 999999999999999999999999999999999998654
|
|
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=117.19 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=94.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+++..++||+|++|+++|+++..|+++...... .....++.+++. ...++.++.++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~~ 76 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMT----RMPNITTTTPE 76 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-CccCCCHHHHhC----CCCCcEEECCC
Confidence 5678999999999999999999999999998899999999999998765331 111334555532 01267899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDED---DHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiIt~~DIl~ 341 (405)
+++.+++++|.+++.+++||+|++ |+++|+||.+||++
T Consensus 77 ~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 77 ESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999999999976 69999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=114.47 Aligned_cols=94 Identities=29% Similarity=0.428 Sum_probs=86.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+.. .+.++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------------~~~~v~~~ 57 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS------------------------EVVTATKR 57 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------------CcEEecCC
Confidence 578899999999999999999999999999889999999999997621 16789999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+|++|+++|+||.+||++
T Consensus 58 ~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 58 TTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred CCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999997799999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-14 Score=114.23 Aligned_cols=111 Identities=25% Similarity=0.403 Sum_probs=95.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+++.+..........++.++ |..++.++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~ 75 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEI------MTRNVITVTPD 75 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHh------cCCCcEEECCC
Confidence 567889999999999999999999999999889999999999999876644222223355555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+++||+++ |+++|+||..||++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 76 DTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred CcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999986 99999999999976
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=117.05 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=92.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhcccc--chhhhHHHhhhccccCccCceEe
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYT--NLDVTLKEANEHKTDWFEGVEKC 300 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~--~l~~~v~~~~~~~~~~~~~~~~v 300 (405)
++.++.+++++.++++.|.+.+++++||+|++ |+++|+++..|+++........ ..+............|..++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 56789999999999999999899999999987 9999999999998866433110 00000000011112356788899
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q psy744 301 LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340 (405)
Q Consensus 301 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl 340 (405)
.+++++.+|++.|.+++.+++||+|++|+++|+||.+||-
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 9999999999999999999999999889999999999974
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=120.75 Aligned_cols=114 Identities=13% Similarity=0.247 Sum_probs=96.8
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++.++.++.++++.|.+++++.+||+|++|+++|+++..|++....++. ...+.++.++ |.+++.++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~-~~~~~~v~~i------m~~~~~~v~~ 74 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK-VQPSDPVSKA------LYKQFKRVNK 74 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc-cCCCCcHHHH------hhccceecCC
Confidence 46788999999999999999999999999998899999999999998766542 2335577777 5578999999
Q ss_pred CCCHHHHHHHHH---------HcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 303 DETLFTVMERIV---------RAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 303 ~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
++++.++.++|. +.+.+.+||+|++|+++|+||..||++++
T Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 75 NDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 999999999653 33677889999889999999999999874
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=115.67 Aligned_cols=111 Identities=23% Similarity=0.327 Sum_probs=92.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch----hhhHHHhhhccccCccCceE
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL----DVTLKEANEHKTDWFEGVEK 299 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l----~~~v~~~~~~~~~~~~~~~~ 299 (405)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.......... ..++.++ |..++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~ 75 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV------MNTDVPV 75 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH------hcCCCce
Confidence 56889999999999999999999999999988999999999999987654321111 2345554 4567889
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 300 CLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 300 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+.+++++.++++.|.+.+ .+||+|++|+++|+||..|++++
T Consensus 76 v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 76 IIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred ecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 999999999999998865 59999988999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-14 Score=114.52 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=95.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+...+... ....++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~------~~~~~~~v~~~ 74 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA-GEPSAVDEV------ATPPLLTVHPD 74 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc-cccccHHHh------ccCCceEECCC
Confidence 46788999999999999999999999999999999999999999987654321 112234444 45788999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDED--DHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+++.+.+||+|++ |+++|+||.+||+++
T Consensus 75 ~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 75 EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 999999999999999999999977 799999999999863
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-14 Score=113.74 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=94.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
.+.++.++.++.++++.|.+.+...++|+|++|+++|+++..|+++...... ....++.++ |..++.++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~--~~~~~v~~~------~~~~~~~v~~~ 74 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL--SLDDPVSEV------MNRNPITAKVG 74 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC--CcCCCHHHh------hcCCCEEEcCC
Confidence 3567899999999999999999999999998999999999999987665432 123456665 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+|++|+++|+||.+||+.
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 75 SSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999999999998899999999999974
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=116.37 Aligned_cols=113 Identities=24% Similarity=0.353 Sum_probs=95.8
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc---------chhhhHHHhhhccccC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT---------NLDVTLKEANEHKTDW 293 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~---------~l~~~v~~~~~~~~~~ 293 (405)
+++.++.++.++.++.+.|.+.+++++||+|++|+++|+++..|++......... ....++.++ |
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~ 75 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDI------M 75 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHh------c
Confidence 4678899999999999999999999999999889999999999998766433211 012234444 5
Q ss_pred ccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 294 FEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 294 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
...+.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 76 SPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 578899999999999999999999999999998899999999999986
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=115.62 Aligned_cols=111 Identities=19% Similarity=0.319 Sum_probs=91.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERR-VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++++++++.++++.|.+++ .+.+||+|++|+++|+++..|+++...... ...++.+++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---~~~~v~~~~~~----~~~~~~v~~ 74 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW---AQTTVIQVMTP----AAKLVTVLS 74 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc---cccchhhhhcc----cccceEECC
Confidence 5678999999999999997665 889999998899999999999988764331 13345555421 123568999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 75 ~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 75 EESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred CCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999999999999999997799999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=111.49 Aligned_cols=108 Identities=26% Similarity=0.449 Sum_probs=94.4
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++.++.++.++++.|.+++++.+||+|++|+++|+++..|+++...... .++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~-----~~~~~~------~~~~~~~v~~ 70 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK-----KSVEDI------MTRNVITATP 70 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc-----cCHHHh------cCCCCeEECC
Confidence 56788999999999999999999999999998899999999999987655431 124444 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||++++|+++|+||+.||++
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 71 DEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999999998899999999999975
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-14 Score=117.00 Aligned_cols=117 Identities=24% Similarity=0.387 Sum_probs=94.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHH-------HhhhccccCccC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK-------EANEHKTDWFEG 296 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~-------~~~~~~~~~~~~ 296 (405)
++.++++++++.++++.|.+++++++||+|++|+++|+++..|+++...... ........ ........+..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhcccccccccCC
Confidence 5678999999999999999999999999998899999999999988764331 11110000 000111235578
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 899999999999999999999999999998899999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=113.30 Aligned_cols=109 Identities=21% Similarity=0.327 Sum_probs=94.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+.+.... .+.++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~---~~~~v~~~------~~~~~~~i~~~ 72 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG---PDAPVRGV------MRRDFPTVSPS 72 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC---CCCcHHHH------hcCCCcEECCC
Confidence 5678899999999999999888999999998899999999999998765442 12345555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|++|+++|+||..||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 73 ATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999997799999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-14 Score=139.44 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=126.4
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
.+.+++++|... .++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++...... ...+.++
T Consensus 189 ~~~~v~diMtpr-~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~~l~~~-- 260 (408)
T TIGR03520 189 GNTDTKQVMRPR-LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK-----NFDWQSL-- 260 (408)
T ss_pred CCCEeeeeCCch-HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC-----CCCHHHH--
Confidence 355889999532 579999999999999999999999999999864 6899999999998654321 1223443
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (405)
.+++.++++++++.++++.|.+++.|.++|+|++|.++|+||.+||++.+.++...+... + ...-.
T Consensus 261 -----~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~--~-------~~~i~ 326 (408)
T TIGR03520 261 -----LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDD--E-------DLIYS 326 (408)
T ss_pred -----cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCc--C-------ccceE
Confidence 257889999999999999999999999999999999999999999999998654322110 0 11112
Q ss_pred CcCCcccccccCCccccccccCccc
Q psy744 369 LASSDDKVFEENEEPRDYVQNSCWG 393 (405)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (405)
...+....+++...++++++..++.
T Consensus 327 ~~~~~~~~v~G~~~l~~l~~~l~~~ 351 (408)
T TIGR03520 327 KIDDNNYVFEGKTSLKDFYKILKLE 351 (408)
T ss_pred EeCCCeEEEEeccCHHHHHHHhCCC
Confidence 2334556777788888888888775
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=111.98 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=93.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.+++++.++.++++.|.+.+++.+||++++ |+++|+++..|+++...... .. .++..+ ..++.++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~-~~--~~~~~~-------~~~~~~v~~ 71 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE-ED--LDLRDL-------LRPPLFVPE 71 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC-Cc--CCHHHH-------hcCCeecCC
Confidence 57889999999999999999999999999988 99999999999998775442 11 234432 246788999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 72 STPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999999999998899999999999975
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=136.01 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=104.6
Q ss_pred ccccccccccccCC--eeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 211 NKTLRDLKIGTYEN--VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 211 ~~~v~~i~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
..+++++|. ++ +.++++++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.+..+. ..+.++.++
T Consensus 196 ~~~V~~im~---~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~--~~~~~v~~i-- 268 (321)
T PRK11543 196 LNKVHHLMR---RDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGG--ALTTPVNEA-- 268 (321)
T ss_pred HhHHHHHhc---cCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCC--CcCCcHHHh--
Confidence 457888884 55 899999999999999999888899999999999999999999988665432 223446665
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
|.+++.++.+++++.++++.|.+++..++||+|++|+++|+||..||+++
T Consensus 269 ----m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 269 ----MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred ----cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 55788899999999999999999999999999988999999999999964
|
|
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=111.07 Aligned_cols=110 Identities=23% Similarity=0.343 Sum_probs=95.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++++||+|++|+++|+++..|+++.+.... ....++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~--~~~~~v~~~------~~~~~~~v~~~ 73 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI--DLDTPVSEI------MTRDLVTVDPD 73 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC--CCccCHHHh------ccCCCEEECCC
Confidence 4678899999999999999999999999998899999999999988766543 223445554 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 74 EPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999999999998899999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-14 Score=114.81 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=95.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhcccc----------chhhhHHHhhhcccc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYT----------NLDVTLKEANEHKTD 292 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~----------~l~~~v~~~~~~~~~ 292 (405)
++.++.++.++.++++.|.+.+...+||+|++ |+++|+++..|++..+.+.... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI------ 75 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH------
Confidence 56788999999999999999999999999987 9999999999999876543210 012344444
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+..++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||+++
T Consensus 76 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 76 MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 44678999999999999999999999999999977999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=113.83 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=95.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc--------chhhhHHHhhhccccCcc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT--------NLDVTLKEANEHKTDWFE 295 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~--------~l~~~v~~~~~~~~~~~~ 295 (405)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++........ ....++.++ +..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~ 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEV------MKT 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHh------hCC
Confidence 567899999999999999999999999999889999999999998876532111 012345554 446
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 296 GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 296 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..||+++
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 78899999999999999999999999999987999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=116.48 Aligned_cols=111 Identities=20% Similarity=0.326 Sum_probs=94.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccc----------------------hhh
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN----------------------LDV 281 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~----------------------l~~ 281 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++......... .+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 4678999999999999999999999999999999999999999998765321111 123
Q ss_pred hHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++ |..++..+.+++++.++++.|.+++.+++||+++ |+++|+||..||++
T Consensus 82 ~v~~~------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDI------MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cHHHh------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45554 5567889999999999999999999999999985 99999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=131.84 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=138.5
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
.+.+|+++|+.+ .++..+..+++.+++.+.+....+.++|+..++ +.++|++..+|+++++.+... ..-.++++
T Consensus 198 e~~tV~DIMvpR-~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d~~~ 272 (423)
T COG4536 198 ENLTVSDIMVPR-NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKEDILR 272 (423)
T ss_pred ccceeeeeeccc-cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhHHHH
Confidence 455899999865 789999999999999999999999999999654 569999999999999987742 12223322
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (405)
....++++++++++.+.+..|.+++-|...||||+|.+.|+||.+||++.++++...+ .+.......
T Consensus 273 ----~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde---------~d~~~~ev~ 339 (423)
T COG4536 273 ----AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDE---------HDTLAKEVI 339 (423)
T ss_pred ----HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccccc---------Ccccchhhc
Confidence 2357899999999999999999999999999999999999999999999999544321 222233455
Q ss_pred CcCCcccccccCCccccccccCcccccccc
Q psy744 369 LASSDDKVFEENEEPRDYVQNSCWGEVPVS 398 (405)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (405)
..++..-+.+++..+||+|++.+|. +|=-
T Consensus 340 ~q~dgs~iidGs~~iRdlNr~l~W~-Lp~e 368 (423)
T COG4536 340 PQSDGSFIIDGSANVRDLNRALDWN-LPDE 368 (423)
T ss_pred ccCCCcEEEeCCCcHHHHHHhcCCC-CCCC
Confidence 6677888999999999999999995 5533
|
|
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=110.90 Aligned_cols=109 Identities=23% Similarity=0.359 Sum_probs=93.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++.+||+|++|+++|+++..|++........ .+.++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~--~~~~v~~~------~~~~~~~v~~~ 73 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF--LEKKVFNI------VSQDVFYVNEE 73 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc--ccCcHHHH------hcCCcEEEcCC
Confidence 56789999999999999999999999999988999999999999876543211 13345554 45788899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 74 DTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999999999996 99999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-14 Score=134.73 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=102.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
..+++++|.. .++++++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+.+....+. ...+.++.++
T Consensus 201 ~~~V~dim~~-~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~-~~~~~~v~~i---- 274 (326)
T PRK10892 201 LLRVSDIMHT-GDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI-DLRQASIADV---- 274 (326)
T ss_pred cCcHHHHhCC-CCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC-CcccCCHHHh----
Confidence 3467888831 028899999999999999999988888888998999999999999987655331 1113456666
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||..||+++
T Consensus 275 --m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 275 --MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred --cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 557889999999999999999999999999998 6899999999999974
|
|
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=109.79 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=90.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+++... .++.++ |.+.+.++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~--------~~~~~~------~~~~~~~~~~~ 67 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG--------GCCGDH------AEPFKVTVSVD 67 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc--------cchhhh------cccCCEEECCC
Confidence 5678999999999999999999999999998899999999999986421 123333 44567789999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 68 DDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred CCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999975
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=111.08 Aligned_cols=111 Identities=21% Similarity=0.297 Sum_probs=93.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|++.............++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i------~~~~~~~v~~~ 74 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERV------MTPNPVCATSD 74 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHh------cCCCCeEEcCC
Confidence 5678999999999999999889999999997 9999999999998654433211112455555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+|++|+++|+||..||+.
T Consensus 75 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 75 TPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999999999998899999999999975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=111.95 Aligned_cols=111 Identities=24% Similarity=0.410 Sum_probs=94.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc-chhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT-NLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~-~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+....+. ....++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~ 75 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDI------MTTEVLTVSP 75 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHH------hccCceEECC
Confidence 567899999999999999988888999999999999999999999866543211 123445555 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 76 DDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 999999999999999999999996 99999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=109.77 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=93.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++....... ....++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~-~~~~~i~~~------~~~~~~~v~~~ 74 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE-LKDAKVREV------MNSPVITIDAN 74 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh-hcCCcHHHh------ccCCceEECCC
Confidence 35788999999999999999999999999988999999999999875433211 112345554 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 75 DSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999974
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=111.31 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=92.9
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|++... ...++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------~~~~v~~~------~~~~~~~v~~ 68 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------PDTTIEKV------MTKNPITVNP 68 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------ccccHHHH------hcCCCeEECC
Confidence 3678899999999999999999989999999999999999999997531 12345555 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 69 KTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred CCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=108.39 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=93.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++....+. . ..++.++ +..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~-~--~~~v~~~------~~~~~~~v~~~ 71 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL-E--LAKVKDV------MTKDVITIDED 71 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc-c--ccCHHHH------hcCCceEECCC
Confidence 5678999999999999999999999999998 99999999999998765431 1 1345554 34678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 72 EQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999999999998899999999999975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=113.06 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=89.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH-----HHhccccchhhhHHHhhhccccCccCce
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL-----AAEKTYTNLDVTLKEANEHKTDWFEGVE 298 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~-----~~~~~~~~l~~~v~~~~~~~~~~~~~~~ 298 (405)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+. ...+.....+.++.++| .++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im------~~~~~ 75 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVM------TPKED 75 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhc------Cchhh
Confidence 46789999999999999998999999999988999999999999862 22210112234566654 33332
Q ss_pred E--e----cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q psy744 299 K--C----LLDETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILV 341 (405)
Q Consensus 299 ~--v----~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiIt~~DIl~ 341 (405)
. + .+++++.++++.|.+++.+.+||+|++ |+++|+||++||++
T Consensus 76 ~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 76 LKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2 2 368999999999999999999999976 79999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=110.11 Aligned_cols=110 Identities=20% Similarity=0.343 Sum_probs=90.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERR-VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++.++.++.++++.|.+.+ ...++|+| +|+++|+++..|+++...... ...+.++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~------~~~~~~~v~~ 73 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK-DLSDLPIGEV------MTQPVVTLQE 73 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC-CccccCHHHh------cCCCcEEEec
Confidence 4678899999999999998888 66777777 589999999999998665431 1112445555 4467788888
Q ss_pred C--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 D--ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+ +++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 74 ~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 74 SEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 7 78999999999999999999998899999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=110.01 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=95.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+........ -..++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~v~~~------~~~~~~~v~~~ 74 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLY-DLVVASDI------MTKPPVVVYPE 74 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccccc-ccEEHHHh------ccCCCcEEcCC
Confidence 577899999999999999999999999999889999999999998866543211 11455555 45778999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDE-DDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|+ +|+++|++|..||+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 75 DSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred CCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999999997 799999999999975
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=108.77 Aligned_cols=95 Identities=52% Similarity=0.774 Sum_probs=85.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++++++++.+|++.|.+++++++||+|++.++++|++|..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 68999999999999999999999999999975478999999999873110
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+.++.+++++.+|++.|.+++++++||+|++
T Consensus 52 -------------------------------------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 82 (98)
T cd04618 52 -------------------------------------------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS 82 (98)
T ss_pred -------------------------------------------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC
Confidence 5678999999999999999999999999987
Q ss_pred -CcEEEEEeHHHHHH
Q psy744 256 -GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 -g~lvGivt~~Dl~~ 269 (405)
|+++|++|.+|++.
T Consensus 83 ~~~~~giit~~d~~~ 97 (98)
T cd04618 83 TGTGLYILTSRRILK 97 (98)
T ss_pred CCCceEEeehhhhhc
Confidence 99999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=112.49 Aligned_cols=113 Identities=26% Similarity=0.435 Sum_probs=92.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc------------cchhhhHHHhhhccc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY------------TNLDVTLKEANEHKT 291 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~------------~~l~~~v~~~~~~~~ 291 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+...+..... .....++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA----- 76 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH-----
Confidence 56788999999999999999999999999998999999999999876432110 0112234444
Q ss_pred cCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEeHHHHHHH
Q psy744 292 DWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD--EDDHVLGVLSLSDILVY 342 (405)
Q Consensus 292 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiIt~~DIl~~ 342 (405)
|..+++++.+++++.++++.|.+.+.+.+||++ ++|+++|+||.+||+++
T Consensus 77 -~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 77 -MSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred -hcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 557888999999999999999999999999984 46999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=109.47 Aligned_cols=111 Identities=22% Similarity=0.307 Sum_probs=94.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..++++.+.... .....++.++ |..++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~-~~~~~~v~~~------~~~~~~~v~~~ 75 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL-DILTLPVADV------MTRNPKTIDPD 75 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC-ccccCCHHHh------hccCCeEECCC
Confidence 5677899999999999998888899999998899999999999998776432 1112346665 44677899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 76 ALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999986
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=107.35 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=92.9
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.++.++.++.++.++++.|.+.++.++||+|++|+++|+++..|+++..... .++.++ |...+.++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~------~~v~~~------~~~~~~~v~~ 69 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA------KSLEDI------MLEDVFTVQP 69 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC------CcHhHh------hcCCceEECC
Confidence 4677899999999999999999999999999889999999999998754322 234444 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 70 DASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999999999998899999999999975
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-13 Score=108.33 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=93.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+........ ...+.+. |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~--~~~~~~~------~~~~~~~v~~~ 72 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA--TVLVGDV------MTRDPVTASPD 72 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc--ccCHHHh------ccCCCeEECCC
Confidence 5678999999999999999888999999998 9999999999998766543211 1123333 56788999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 73 ETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred CCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999999999998899999999999986
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=113.09 Aligned_cols=112 Identities=24% Similarity=0.337 Sum_probs=93.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchh-------------------hhHH
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLD-------------------VTLK 284 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~-------------------~~v~ 284 (405)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+++........... .++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 567899999999999999988999999999989999999999999876543211000 1333
Q ss_pred HhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 285 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
++ |.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+||..|++++
T Consensus 82 ~~------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 EI------MTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred Hh------ccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 33 4577889999999999999999999999999997 999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=114.68 Aligned_cols=112 Identities=29% Similarity=0.377 Sum_probs=93.6
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc---------------------cchhh
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY---------------------TNLDV 281 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~---------------------~~l~~ 281 (405)
+++.++.++.++.++++.|.+.++.++||+|++|+++|+++..|+.+....... .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 467889999999999999999999999999988999999999999876543210 00112
Q ss_pred hHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++ |..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||..|+++
T Consensus 82 ~v~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADV------MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHH------hCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 23333 556788999999999999999999999999999 899999999999985
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=111.37 Aligned_cols=112 Identities=22% Similarity=0.383 Sum_probs=93.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc-cc-------chhhhHHHhhhccccCcc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT-YT-------NLDVTLKEANEHKTDWFE 295 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~-~~-------~l~~~v~~~~~~~~~~~~ 295 (405)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+++...... .. ....++.++ |..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI------MST 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH------hcC
Confidence 5678999999999999999999999999998899999999999987532110 00 012234444 446
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 296 GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 296 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 7889999999999999999999999999998899999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-13 Score=107.81 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=90.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+...++|.+ +|+++|+++..|+++............++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~~ 74 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAI------MNPEPIVASPD 74 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHH------hCCCCeEECCC
Confidence 467899999999999999888887777776 59999999999999876542111123456665 44667899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++..++||+| +|+++|+||.+||++
T Consensus 75 ~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 75 DSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999999999998 699999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=133.45 Aligned_cols=171 Identities=13% Similarity=0.168 Sum_probs=131.2
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEAN 287 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~ 287 (405)
+.+.+++++|... .++++++.+.++.++++.+.+++++++||++++ +.++|++..+|++.....+. .. ....+.
T Consensus 184 l~~~~v~eiMtPr-~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~--~~--~~~~l~ 258 (413)
T PRK11573 184 LEKVTVDDIMVPR-NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK--EF--TKENML 258 (413)
T ss_pred cCCCChhhcCCcc-ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC--cC--CHHHHH
Confidence 3456899999765 789999999999999999999999999999764 78999999999997654321 11 112221
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCC
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDP 367 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (405)
+ ..+++.+++++.++.++++.|.+++.|-..|+||+|...|+||..||++.++++-..+... ......
T Consensus 259 ~----~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~--------~~~~~i 326 (413)
T PRK11573 259 R----AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSP--------TLAEEV 326 (413)
T ss_pred h----hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCc--------ccccce
Confidence 1 3368899999999999999999999999999999999999999999999999765433211 001112
Q ss_pred CCcCCcccccccCCccccccccCccccccc
Q psy744 368 DLASSDDKVFEENEEPRDYVQNSCWGEVPV 397 (405)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (405)
....+..-.+++..+++++++..++. +|-
T Consensus 327 ~~~~~~~~~v~G~~~l~d~~~~l~~~-l~~ 355 (413)
T PRK11573 327 TPQNDGSVIIDGTANVREINKAFNWH-LPE 355 (413)
T ss_pred EEecCCEEEEEeeeEHHHHHHHhCCC-CCC
Confidence 22334456778888899998888774 563
|
|
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=107.09 Aligned_cols=109 Identities=28% Similarity=0.435 Sum_probs=93.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..|+++...... . ...++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~-~-~~~~v~~~------~~~~~~~~~~~ 72 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGP-D-LQTPVGEV------MSSPLLTVPAD 72 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCC-C-CCcCHHHh------cCCCceEECCC
Confidence 4678899999999999999888999999987 89999999999998775432 1 23455555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|++|+++|+||.+||++
T Consensus 73 ~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 73 TSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999999999998899999999999975
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=107.55 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=93.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
+++++.++.++.++++.|.+.+...++|+|+ |+++|+++..|+++....... ..+.++.++ |..++..++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~------~~~~~~~v~~~ 73 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL-PSSTPVGEI------ATFPLITVDPD 73 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC-CCCCCHHHH------hCCCcEEECCC
Confidence 4678899999999999999999999999998 899999999999987654321 224456665 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+++.+.+||+| +|+++|+||..|++++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~ 111 (111)
T cd04589 74 DFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence 9999999999999999999998 5999999999999863
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=107.88 Aligned_cols=111 Identities=28% Similarity=0.381 Sum_probs=91.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|++.............++.++ |...+.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~ 74 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDV------MTRGVVTVTED 74 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHh------ccCCccEECCC
Confidence 5678999999999999999999999999997 9999999999987432222111112235555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+++||+|++|+++|+||..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 75 DDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999997899999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=134.81 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=112.9
Q ss_pred ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHh
Q psy744 207 PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286 (405)
Q Consensus 207 ~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~ 286 (405)
..+....+.+++ ..++++|++.+++.+|.+.|.+.|++.+.++++++...||||.+|+........ .+...+++++
T Consensus 144 ~e~~~trv~~~~---~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g-~~~~~~V~ev 219 (610)
T COG2905 144 SEFILTRVGEVK---TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG-RSKTQKVSEV 219 (610)
T ss_pred chHHHHHHHHHh---cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC-CCcccchhhh
Confidence 345555677777 488999999999999999999999999999999999999999999998887652 2456677776
Q ss_pred hhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|+.++++++.++.+.+|+-.|.+++++++||++ +|+++|+||..||++.+..
T Consensus 220 ------mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 220 ------MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ------hccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 678999999999999999999999999999997 8999999999999998864
|
|
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=107.15 Aligned_cols=108 Identities=27% Similarity=0.361 Sum_probs=93.6
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++..+.++.++.+.|.+.+++++||+|+ |+++|+++..|+.+..... + ...++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~-~--~~~~~~~~------~~~~~~~v~~ 71 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG-L--GHAPVKDY------MSTDVVTVPP 71 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc-c--ccCcHHHH------hcCCCEEECC
Confidence 46788999999999999999889999999998 9999999999998766433 1 23456665 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 72 DTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred CCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 99999999999999999999998 899999999999975
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-13 Score=109.39 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=93.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc---------cchhhhHHHhhhccccCc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY---------TNLDVTLKEANEHKTDWF 294 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~---------~~l~~~v~~~~~~~~~~~ 294 (405)
++.++.++.++.++++.|.+.+++++||+|+ |+++|+++..|+.+.+..... .....++.++ |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQI------MT 74 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHh------hc
Confidence 5678999999999999999999999999997 999999999999876543110 0012234443 55
Q ss_pred cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 295 EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 295 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
.+++++.+++++.++++.|.+++...+||+|++|+++|++|+.|++++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 75 RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 788899999999999999999999999999988999999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-13 Score=108.47 Aligned_cols=111 Identities=24% Similarity=0.347 Sum_probs=92.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch---------hhhHHHhhhccccCc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL---------DVTLKEANEHKTDWF 294 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l---------~~~v~~~~~~~~~~~ 294 (405)
++.++.++.++.++++.|.+.++..+||+|+ |+++|+++..|+............ ..++.++ |.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDI------MT 74 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHh------cc
Confidence 5678999999999999999999999999997 999999999999987643211000 1223333 55
Q ss_pred cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 295 EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 295 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 75 RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 67889999999999999999999999999997799999999999986
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=106.02 Aligned_cols=109 Identities=29% Similarity=0.386 Sum_probs=92.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++..+.++.++.+.|.+.+++.+||+|+ |+++|+++..|+++....... ....++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~------~~~~~~~v~~~ 73 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL-DPDTPVSEV------MTAPPITIPPD 73 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC-CccCCHHHH------hCCCCeEECCC
Confidence 5678999999999999999888999999997 999999999999875443311 122445555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+++ |+++|++|..||++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 74 ATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999986 99999999999985
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=105.76 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=92.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+++............++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~ 74 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEV------MSTPLITIDPN 74 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHh------cCCCcEEECCC
Confidence 5678899999999999999989999999996 4999999999999866433211223445555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|+ ++++|+||..|+++
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 75 ASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred CCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhhhhc
Confidence 99999999999999999999985 49999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=134.06 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=103.4
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
++.++| .++++++.+++++.++++.|.+++++.+||+|++++++|+||.+|+... . ...++.++
T Consensus 90 Kv~~iM---i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~----~~~~V~di------ 153 (479)
T PRK07807 90 KSRDLV---FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---D----RFTQVRDV------ 153 (479)
T ss_pred cccccc---ccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---c----cCCCHHHh------
Confidence 455666 3789999999999999999999999999999999999999999998532 1 12346665
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|..++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+||++.....+
T Consensus 154 Mt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~ 208 (479)
T PRK07807 154 MSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTP 208 (479)
T ss_pred ccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCc
Confidence 5678999999999999999999999999999998899999999999999887543
|
|
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-13 Score=106.92 Aligned_cols=103 Identities=19% Similarity=0.290 Sum_probs=87.5
Q ss_pred EcCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 228 VAEETSIIHALRKFLERR-----VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 228 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.+|+++.. .+.++.++ +..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------~~~~v~~~------~~~~~~~i~~ 68 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------PDTPVSDI------MDTDVISVSA 68 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------CcchHHHH------hCCCCeEEcC
Confidence 568899999999998777 46899999889999999999997521 13345554 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
++++.++++.|.+++.+.+||+|++|+++|+||..||++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 69 DDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred CCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 99999999999999999999999889999999999999764
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-13 Score=108.50 Aligned_cols=111 Identities=24% Similarity=0.364 Sum_probs=92.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccc---------hhhhHHHhhhccccCc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN---------LDVTLKEANEHKTDWF 294 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~---------l~~~v~~~~~~~~~~~ 294 (405)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++......... ...++.++ |.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDI------MT 74 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHH------cc
Confidence 5678999999999999999999999999997 99999999999987655321100 12234443 45
Q ss_pred cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 295 EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 295 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
.++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+||..|++++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 75 RPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 67889999999999999999999999999996 999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=105.59 Aligned_cols=109 Identities=26% Similarity=0.401 Sum_probs=90.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+...... .....++.++ |..++.+++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~------~~~~~~~v~~~ 73 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK-AKFSLPVREV------MGEPLPTVDPD 73 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHH------hcCCCceeCCC
Confidence 4678899999999999999999999999997 99999999999998765432 1123445555 44677889999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+ .. .+||++++|+++|+||.+||+++
T Consensus 74 ~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 74 APIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred CcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhcC
Confidence 999999999988 33 47889888999999999999864
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=106.28 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=91.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC-CCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT-SSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~-~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+..... .......+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~----------------- 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGE----------------- 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHH-----------------
Confidence 57899999999999999999999999999986 899999999999965432110 00000000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
++ .....| ..++.++.+++++.++++.|.+++.+.+||+|+
T Consensus 64 ---------------------~~---------------~~~~~~---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 104 (120)
T cd04641 64 ---------------------AL---------------ERRSQD---FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE 104 (120)
T ss_pred ---------------------HH---------------hhcccC---CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC
Confidence 00 011222 256789999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+||.+|+++
T Consensus 105 ~~~~~Givt~~di~~ 119 (120)
T cd04641 105 NKRVEGIISLSDILQ 119 (120)
T ss_pred CCCEEEEEEHHHhhc
Confidence 899999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=130.39 Aligned_cols=172 Identities=14% Similarity=0.146 Sum_probs=131.5
Q ss_pred cchhHHHHHHhh--hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC
Q psy744 72 DGGNQIFVKFFK--FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT 149 (405)
Q Consensus 72 ~~~~~~~~~~l~--~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~ 149 (405)
+.+.+.+++-|. .+++.|+|..-.++++++.+.++.++++.|.++++..+||++++.++++|+++.+|++.++..
T Consensus 176 ~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--- 252 (408)
T TIGR03520 176 KEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--- 252 (408)
T ss_pred hHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc---
Confidence 345566666544 669999997777899999999999999999999999999999866799999999999843210
Q ss_pred CCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEc
Q psy744 150 SSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229 (405)
Q Consensus 150 ~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~ 229 (405)
. ...+.+++ +++.+++
T Consensus 253 -~-----------------------------------------------------------~~~l~~~~----~~~~~Vp 268 (408)
T TIGR03520 253 -K-----------------------------------------------------------NFDWQSLL----REPYFVP 268 (408)
T ss_pred -C-----------------------------------------------------------CCCHHHHc----CCCeEeC
Confidence 0 00223333 5788999
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHH
Q psy744 230 EETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 230 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
+++++.++++.|.+++.+.++|+|+.|.++|+||.+|++..+.....+..+.. .+.+. ......+.++...++.++
T Consensus 269 e~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~-~~~i~---~~~~~~~~v~G~~~l~~l 344 (408)
T TIGR03520 269 ENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDE-DLIYS---KIDDNNYVFEGKTSLKDF 344 (408)
T ss_pred CCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcC-ccceE---EeCCCeEEEEeccCHHHH
Confidence 99999999999999999999999999999999999999999876543322211 11110 012455778888999888
Q ss_pred HHHHH
Q psy744 310 MERIV 314 (405)
Q Consensus 310 ~~~m~ 314 (405)
.+.|-
T Consensus 345 ~~~l~ 349 (408)
T TIGR03520 345 YKILK 349 (408)
T ss_pred HHHhC
Confidence 88873
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=136.96 Aligned_cols=127 Identities=21% Similarity=0.203 Sum_probs=106.1
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
+...+++++| .+++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+...... ...+.++.++
T Consensus 444 L~~~~V~dim---~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~di-- 517 (574)
T PRK01862 444 LRTTQMRELI---QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADY-- 517 (574)
T ss_pred HhhCcHHHHh---cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHh--
Confidence 3345788887 367889999999999999999999999999999999999999999988654331 1112345555
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHHHHHh
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED--DHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiIt~~DIl~~l~~ 345 (405)
|.+++.++++++++.++++.|.+++.+.+||+|++ |+++|+||++|+++++.+
T Consensus 518 ----m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 518 ----AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred ----ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 55788899999999999999999999999999876 589999999999999863
|
|
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=105.33 Aligned_cols=107 Identities=24% Similarity=0.351 Sum_probs=90.3
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++..|+++... ...++.+++ ...+..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~~~~v~~~~------~~~~~~~~~ 69 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD------LDKPVSEVM------TPENLLTTV 69 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc------CCCCHHHhc------ccCceEEec
Confidence 46788999999999999999999999999998899999999999864321 133455553 345566666
Q ss_pred -CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 -DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 -~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 70 EGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999999999998899999999999985
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=104.08 Aligned_cols=105 Identities=20% Similarity=0.400 Sum_probs=90.7
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... ...++.++ |...+.++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~-------~~~~~~~~------~~~~~~~v~~ 67 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD-------PDETVEEI------MSKDLVVAVP 67 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC-------ccccHHHh------CCCCCeEECC
Confidence 46788999999999999998888889999997 9999999999997531 12345555 4467888999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+++||+|++|+++|+|+..||++
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 68 EMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=105.50 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=89.3
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceE
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEK 299 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~ 299 (405)
.++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|++.... . ..++.++ |.....+
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~-----~~~v~~~------~~~~~~~ 69 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S-----ETPLSEV------MTPREVL 69 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c-----CCCHHHh------cCCCceE
Confidence 35678899999999999999889899999997 789999999999875321 1 1235555 4455566
Q ss_pred ecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 300 CLL--DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 300 v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+.. ++++.++++.|.+++.+.+||+|++|+++|+||.+||++
T Consensus 70 ~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 70 VVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred EECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 655 999999999999999999999998899999999999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-13 Score=133.81 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=101.3
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
.++++|.+......++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|+.... ...+.++.++|.
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-----~~~~~~V~dIMt- 168 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-----MSLDTKVKDFMT- 168 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-----cCCCCCHHHHhC-
Confidence 455555433345579999999999999999999999999996 58999999999996421 133566777753
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
..++++++.+++++.+|+++|.++++..|||+|++|+++|+||.+||++..
T Consensus 169 ---~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 169 ---PFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred ---CCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 113788999999999999999999999999999889999999999999965
|
|
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=108.37 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=101.9
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..+|.++| +++++++.++.++.+|+++|.++|+.-+||+++ ++++|-+|..|+.+.+.... +
T Consensus 64 ~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~-------e------- 125 (187)
T COG3620 64 RITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM-------E------- 125 (187)
T ss_pred eEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc-------c-------
Confidence 45899999 899999999999999999999999999999999 79999999999997766432 1
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
.....+++++| ...+.+|+++.++..+-+++.+
T Consensus 126 --------------------------------------------~i~~~~vr~vM---~e~fP~Vs~~~~l~vI~~LL~~ 158 (187)
T COG3620 126 --------------------------------------------SIRSLRVREVM---GEPFPTVSPDESLNVISQLLEE 158 (187)
T ss_pred --------------------------------------------chhhhhHHHHh---cCCCCcCCCCCCHHHHHHHHhh
Confidence 11144677788 4788999999999877777654
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+ .++.|+ ++|+++||||..|+++.+.+
T Consensus 159 ~--~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 159 H--PAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred C--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 4 577788 58999999999999987654
|
|
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=103.22 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=89.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+...+||+| +|+++|+++..|+++... ..++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~-------~~~~~~~------~~~~~~~v~~~ 67 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP-------NRLVADA------MTREVVTISPE 67 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc-------cCCHHHH------ccCCCEEECCC
Confidence 567889999999999999988989999998 589999999999986431 2234554 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|+ |+++|+||..|++.
T Consensus 68 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 68 ASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred CCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 99999999999999999999996 99999999999873
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.1e-12 Score=119.60 Aligned_cols=194 Identities=10% Similarity=0.153 Sum_probs=139.9
Q ss_pred chhHHHHHH--hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC
Q psy744 73 GGNQIFVKF--FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150 (405)
Q Consensus 73 ~~~~~~~~~--l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~ 150 (405)
.+.+.+++. |..+++.|+|..-.++++++.+.++.++++.+.+++...+||++.+.++++|+++..|++..+... .
T Consensus 53 ~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~--~ 130 (292)
T PRK15094 53 DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD--A 130 (292)
T ss_pred HHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc--C
Confidence 445566655 345699999966568999999999999999999999999999987657899999999998543210 0
Q ss_pred CCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC
Q psy744 151 SSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE 230 (405)
Q Consensus 151 ~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~ 230 (405)
. ...+.++| +++.++++
T Consensus 131 ~-----------------------------------------------------------~~~l~~l~----r~~~~V~e 147 (292)
T PRK15094 131 E-----------------------------------------------------------AFSMDKVL----RQAVVVPE 147 (292)
T ss_pred C-----------------------------------------------------------cCCHHHHc----CCCcCcCC
Confidence 0 01233444 45668999
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHH-HhhhccccCccCceEecCCCCHHHH
Q psy744 231 ETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK-EANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 231 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~-~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+.....+..+.... .+.. .....+.++...+|.+.
T Consensus 148 ~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~----~~~~~~~v~G~~~l~dl 223 (292)
T PRK15094 148 SKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ----LSRHTWTVRALASIEDF 223 (292)
T ss_pred CCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEE----eCCCeEEEEeccCHHHH
Confidence 999999999999999999999999999999999999999988764333221110 1111 22345778888888888
Q ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 310 MERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 310 ~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
.+.+ ++. +| .+ ++-|...++-...++
T Consensus 224 ~~~l---~~~-l~----~~---~~~Tl~G~i~~~l~~ 249 (292)
T PRK15094 224 NEAF---GTH-FS----DE---EVDTIGGLVMQAFGH 249 (292)
T ss_pred HHHh---CCC-CC----CC---CCccHHHHHHHHhCc
Confidence 8775 221 32 11 455666666555543
|
|
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-12 Score=100.66 Aligned_cols=111 Identities=32% Similarity=0.466 Sum_probs=93.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++..+.++.++++.|.+.+...+||+|++++++|+++..|++.......... ...+.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~ 74 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP-LVTVGDV------MTRDVVTVSPD 74 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc-cccHHHH------hcCCceecCCC
Confidence 4678899999999999999988999999998899999999999998776542211 1113333 44678889999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 75 TSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred cCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-13 Score=134.50 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=139.9
Q ss_pred HHHHHhh--hcccccccCCCCCeEEEeCCccHHHHHHHHHH-----cCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC
Q psy744 77 IFVKFFK--FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVY-----NGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT 149 (405)
Q Consensus 77 ~~~~~l~--~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~-----~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~ 149 (405)
.+++.+. ..++.++| +.++++++.+.++.+|++.|.+ +++..++|+|++ ++++|+++.+|++..
T Consensus 121 ~i~~ll~~~e~tvg~iM--t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a------ 191 (449)
T TIGR00400 121 AINLLLSYSDDSAGRIM--TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-KHLKGVLSIRDLILA------ 191 (449)
T ss_pred HHHHHhCCCcchHHHhC--cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-CeEEEEEEHHHHhcC------
Confidence 3444443 45889999 5789999999999999999986 566788888876 889999998888621
Q ss_pred CCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEc
Q psy744 150 SSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229 (405)
Q Consensus 150 ~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~ 229 (405)
.+ +.+++++| .+++.++.
T Consensus 192 ~~-----------------------------------------------------------~~~v~~im---~~~~~~v~ 209 (449)
T TIGR00400 192 KP-----------------------------------------------------------EEILSSIM---RSSVFSIV 209 (449)
T ss_pred CC-----------------------------------------------------------CCcHHHHh---CCCCeeEC
Confidence 00 12455566 25678899
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHH
Q psy744 230 EETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 230 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
+++++.++++.|.+++...+||+|++|+++|+||.+|+++.+.+.. .+++++ ....+..+++.+.++
T Consensus 210 ~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-------~ed~~~------~~gv~~~~~~~l~~~ 276 (449)
T TIGR00400 210 GVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-------TEDFYM------IAAVKPLDDSYFDTS 276 (449)
T ss_pred CCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-------HHHHHH------hcCCCCCcchhhhch
Confidence 9999999999999999999999999999999999999999887652 134332 233345567888999
Q ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 310 MERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 310 ~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+..|.+++..+|+|. .+.|++| ..++..+.
T Consensus 277 ~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~ 306 (449)
T TIGR00400 277 ILVMAKNRIIWLLVL----LVSSTFT-ATIISNYE 306 (449)
T ss_pred HHHHHHhccchHHHH----HHHHHHH-HHHHHHHH
Confidence 999999999999886 4778888 77776654
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-12 Score=102.54 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=93.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.+|++.|.+++...+||+|++ ++++|++|..|+.+.+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~------------------------- 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGP------------------------- 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCC-------------------------
Confidence 47889999999999999999999999999987 8999999999998654321000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.+++ ..++.++.+++++.++++.|.+++...+||+|++
T Consensus 56 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 99 (114)
T cd04619 56 ---------------------------------GCTAPVENVM---TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN 99 (114)
T ss_pred ---------------------------------cccCCHHHHh---cCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence 0022455555 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+.+|+++
T Consensus 100 ~~~~Gvi~~~dl~~ 113 (114)
T cd04619 100 ARPLGVLNARDALK 113 (114)
T ss_pred CcEEEEEEhHhhcc
Confidence 99999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=103.36 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=90.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.+++...+||+|++ ++++|++|..|+.+.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~---------------------------- 52 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPND---------------------------- 52 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccc----------------------------
Confidence 46789999999999999999999999999986 8999999999988421000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+...++.++| ..++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 53 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~ 96 (111)
T cd04603 53 ---------------------------------YETLKVCEVY---IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE 96 (111)
T ss_pred ---------------------------------ccccChhhee---ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence 0012355555 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||.+|+++
T Consensus 97 ~~~~Giit~~di~~ 110 (111)
T cd04603 97 GKLVGTIYERELLR 110 (111)
T ss_pred CeEEEEEEhHHhhc
Confidence 99999999999975
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=102.65 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=88.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEe
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKC 300 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v 300 (405)
....+.++.++.++.+.|.+.+...+||+|+ +|+++|+++.+|+.+.... + |..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------------~------m~~~~~~v 64 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------------Y------IDPSPFTV 64 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------------h------ccCCCceE
Confidence 4678899999999999999988889999998 6999999999999876543 1 55678899
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 301 LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 301 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
++++++.++++.|.+++.+.+||++ +|+++|+||+.||+++
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 65 SPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 9999999999999999999999995 7999999999999863
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=103.63 Aligned_cols=111 Identities=25% Similarity=0.340 Sum_probs=92.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc--------chhhhHHHhhhccccCcc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT--------NLDVTLKEANEHKTDWFE 295 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~--------~l~~~v~~~~~~~~~~~~ 295 (405)
++.++++++++.++++.|.+.+++++||+|++|+++|+++..|+.+........ ....++.++ |..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~ 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI------MTK 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH------hhC
Confidence 467889999999999999999999999999889999999999998765322100 112334454 446
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 296 GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 296 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++.+++++.++++.|.+++...+||+|+ |+++|++|..||++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 7889999999999999999999999999986 99999999999985
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=101.76 Aligned_cols=100 Identities=21% Similarity=0.262 Sum_probs=86.7
Q ss_pred eEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCC
Q psy744 226 ETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDET 305 (405)
Q Consensus 226 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~ 305 (405)
+++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+... .++.++ |...+.++.++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~--------~~~~~~------~~~~~~~v~~~~~ 68 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY--------GDVVDY------IVRGIPYVRLTST 68 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc--------cchhhh------hhcCCcEEcCCCC
Confidence 57889999999999999999999999998 99999999999986321 123333 4467889999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 306 LFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 306 l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 69 l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 69 AEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 99999999999999999998 699999999999975
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=128.54 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=98.7
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccC--
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEG-- 296 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~-- 296 (405)
.++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+.... ..+.++.++| .++
T Consensus 107 i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------~~~~~V~eIM------t~~~~ 174 (505)
T PLN02274 107 VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------DRETKLSEVM------TSDDD 174 (505)
T ss_pred cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------ccCCcHHHHh------ccCCC
Confidence 378999999999999999999999999999987 48999999999996532 1245677764 344
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
+.++.+++++.++++.|.+++...+||+|++|+++|+||++||++.+..
T Consensus 175 lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 175 LVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 7899999999999999999999999999989999999999999999874
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-12 Score=125.90 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=100.6
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
++.++| .++++++.+++++.++++.|.+.+++.+||+|+ ++++|+||.+|+... ....++.++
T Consensus 89 Kv~eim---~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~-------~~~~~V~dI------ 151 (475)
T TIGR01303 89 KSRDLV---LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV-------DRFTQVRDI------ 151 (475)
T ss_pred chhhcc---ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC-------CCCCCHHHH------
Confidence 444555 378899999999999999999999999999984 799999999998532 112346665
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|..+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.....+
T Consensus 152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~ 206 (475)
T TIGR01303 152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTP 206 (475)
T ss_pred ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCc
Confidence 5678999999999999999999999999999998899999999999999887553
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=103.72 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=92.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+++...............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~------------------ 62 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTIT------------------ 62 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchh------------------
Confidence 67899999999999999999999999999987 89999999999987553211000000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.. .+.. . .....+.+ ..++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 63 -----------~~---~~~~----~----------~~~~~~~~---~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~ 111 (126)
T cd04642 63 -----------FK---ELSE----K----------FTDSDGVK---SRPLITCTPSSTLKEVITKLVANKVHRVWVVDEE 111 (126)
T ss_pred -----------hh---hhhh----h----------cccccccc---cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC
Confidence 00 0000 0 00111222 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 112 ~~~~Giit~~dil~ 125 (126)
T cd04642 112 GKPIGVITLTDIIS 125 (126)
T ss_pred CCEEEEEEHHHHhc
Confidence 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-12 Score=127.43 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=97.3
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCcc--C
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSE---GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFE--G 296 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~--~ 296 (405)
..+++++.+++++.+++++|.+++++.+||+|++ ++++|+|+.+|+.... ..+.++.++| .+ +
T Consensus 103 i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~------~~~~~V~diM------t~~~~ 170 (495)
T PTZ00314 103 IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK------DKSTPVSEVM------TPREK 170 (495)
T ss_pred ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc------cCCCCHHHhh------CCcCC
Confidence 4788999999999999999999999999999974 8999999999997321 1245577764 34 7
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+.++.+++++.+++++|.+++.+.+||+|++|+++|+||++||++...
T Consensus 171 lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 171 LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 889999999999999999999999999999999999999999998865
|
|
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=105.16 Aligned_cols=110 Identities=25% Similarity=0.386 Sum_probs=91.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc-cc------------------------
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY-TN------------------------ 278 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~-~~------------------------ 278 (405)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++.+..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 999999999999887653320 00
Q ss_pred ------hhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 279 ------LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 279 ------l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
...++.+ .|..++.++.+++++.++++.|.+++.+++||+++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRD------IMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHH------HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0112333 35578899999999999999999999999999986 99999999999974
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=101.27 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=91.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|.+ ++++|++|..|+++........
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~------------------------- 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADL------------------------- 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCc-------------------------
Confidence 56889999999999999999999999999987 8899999999998654311000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++|.. ..++.++.+++++.+++++|.+++++.+||+|++
T Consensus 56 ----------------------------------~~~~~~~~~~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~ 100 (118)
T cd04617 56 ----------------------------------QKVPVGVIMTR-MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKV 100 (118)
T ss_pred ----------------------------------cCCCHHHHhCC-CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCC
Confidence 01234444420 1367899999999999999999999999999976
Q ss_pred ---CcEEEEEeHHHHHH
Q psy744 256 ---GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 ---g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 101 ~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 101 DEGLEVIGRITKTNITK 117 (118)
T ss_pred CccceEEEEEEhhheec
Confidence 69999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=128.20 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=103.5
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLE-----RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~ 285 (405)
..+++++|. +++++++++.++.++++.|.+ .+...+||+|++++++|+++.+|++... .+.++++
T Consensus 130 e~tvg~iMt---~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~-------~~~~v~~ 199 (449)
T TIGR00400 130 DDSAGRIMT---IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK-------PEEILSS 199 (449)
T ss_pred cchHHHhCc---CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC-------CCCcHHH
Confidence 458899994 789999999999999999975 4556789999899999999999997531 1234666
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
+ |.+++.++.+++++.++++.|.+++...+||||++|+++|+||.+|+++.+..+.
T Consensus 200 i------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 200 I------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred H------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh
Confidence 5 4467889999999999999999999999999999999999999999999997543
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-12 Score=126.19 Aligned_cols=111 Identities=21% Similarity=0.318 Sum_probs=98.0
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCc-cCc
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSE---GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWF-EGV 297 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~-~~~ 297 (405)
.++++++.++.++.++++.|.+++++++||+|++ ++++|+|+.+|++.... ...++.++ |. .++
T Consensus 87 ~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~------~~~~V~dv------m~~~~~ 154 (450)
T TIGR01302 87 ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD------KGKPVSEV------MTREEV 154 (450)
T ss_pred ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc------CCCCHHHh------hCCCCC
Confidence 3788999999999999999999999999999987 79999999999975321 13456665 44 488
Q ss_pred eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 298 EKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 298 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus 155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 99999999999999999999999999999999999999999999874
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=99.40 Aligned_cols=109 Identities=35% Similarity=0.468 Sum_probs=94.4
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.+++++.++.++.++...|.++++..+||++. ++++|++|.+|+.++........ .++.++ |..++.++.+
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~--~~v~~v------~~~~~~~~~~ 77 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL--LPVKEV------MTKPVVTVDP 77 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc--ccHHHh------ccCCcEEECC
Confidence 67899999999999999999999999999984 48999999999999987663221 134554 5568899999
Q ss_pred CCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEeHHHHH
Q psy744 303 DETLFTVMERIVR-AEVHRLVVVDEDD-HVLGVLSLSDIL 340 (405)
Q Consensus 303 ~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiIt~~DIl 340 (405)
++++.++++.|.+ ++++.+||+|+++ +++|++|.+|++
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 9999999999999 7999999999885 999999999974
|
|
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-12 Score=118.43 Aligned_cols=113 Identities=27% Similarity=0.386 Sum_probs=96.8
Q ss_pred cccccccccccCC-eeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 212 KTLRDLKIGTYEN-VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 212 ~~v~~i~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
.+++++|. ++ +.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++....+. ..+.++.++
T Consensus 155 ~~v~~im~---~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~--~~~~~v~~i---- 225 (268)
T TIGR00393 155 VKVKDLMQ---TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG--SLKSEVRDF---- 225 (268)
T ss_pred hhHHHHhC---CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC--cccCcHHHh----
Confidence 36778773 55 889999999999999999999999999998899999999999988654321 234556666
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLS 335 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt 335 (405)
|.+++.++.+++++.+|++.|.+++..++||+|++|+++|+|+
T Consensus 226 --m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 226 --MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 4577889999999999999999999999999998899999985
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-12 Score=118.34 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=106.1
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
.+.++|..- .+..++.+++++.+..++..+.+++++||+|...+++|+||.+|+..... +.++..+
T Consensus 189 ~Vedi~~P~-~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~-------~t~ieKV------ 254 (432)
T COG4109 189 TVEDIMTPL-EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP-------STTIEKV------ 254 (432)
T ss_pred eHHHhcccc-ccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC-------CccHHHH------
Confidence 677777422 67788999999999999999999999999999999999999999976533 3345554
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|++++.++.+.+++..+.++|.-.++..+||+|++.+++|+||++|+++.+..-.
T Consensus 255 Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 255 MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred hccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence 7799999999999999999999999999999999999999999999999987543
|
|
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=99.41 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=91.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.+|++.|.+++...+||+|+..++++|++|..|+++.+......+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~------------------------ 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP------------------------ 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC------------------------
Confidence 56889999999999999999999999999874368999999999987654310000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++.++++++++.++++.|.+.+...+||+|+
T Consensus 58 ----------------------------------~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~- 99 (114)
T cd04630 58 ----------------------------------DRVNVYEIM---TKPLISVSPDMDIKYCARLMERTNIRRAPVVEN- 99 (114)
T ss_pred ----------------------------------CccCHHHHh---cCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-
Confidence 012455555 257889999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|+++
T Consensus 100 ~~~~Gvi~~~dl~~ 113 (114)
T cd04630 100 NELIGIISLTDIFL 113 (114)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=100.58 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=89.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHHhccccc--hhhhHHHhhhccccCccCceEe
Q psy744 224 NVETVAEETSIIHALRKFLERR-VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN--LDVTLKEANEHKTDWFEGVEKC 300 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~--l~~~v~~~~~~~~~~~~~~~~v 300 (405)
++.++.+++++.++++.|...+ ++.+||+|+ |+++|+++..|+++......... .+.++.++ |..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~------~~~~~~~v 74 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEV------MDPDPLIV 74 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHh------cCCCcEEe
Confidence 4667899999999999998877 889999998 99999999999987654310000 12345554 55788899
Q ss_pred cCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEeHHHHHH
Q psy744 301 LLDETLFTVMERIVRAEVH---RLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 301 ~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
.+++++.++++.|.+++.. ..+|++++|+++|+||..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 75 EADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999999999998864 4468888899999999999975
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=125.34 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=101.5
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
.++++| ..+++++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+.... ....++.++
T Consensus 88 ~~~dim---~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------~~~~~V~di------ 152 (486)
T PRK05567 88 RSESGV---VTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------DLSQPVSEV------ 152 (486)
T ss_pred hhhhcc---cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------cCCCcHHHH------
Confidence 345555 37899999999999999999999999999999999999999999996432 123356665
Q ss_pred Cc-cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 293 WF-EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 293 ~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|. ++++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++.+.
T Consensus 153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 44 67899999999999999999999999999999999999999999999875
|
|
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=99.70 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=91.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.++++..+||+|+++++++|+++..|+++.+........ ..+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~--~~~~~---------------- 63 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP--GLDPL---------------- 63 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc--chhhh----------------
Confidence 467889999999999999999999999999854789999999999976543211000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.+ .......++ ..++.++.+++++.+|++.|.+++.+++||+|++
T Consensus 64 ------------------~~--------------~~~~~~~~~---~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 108 (123)
T cd04627 64 ------------------YP--------------IPLRDLTIG---TSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ 108 (123)
T ss_pred ------------------hh--------------hhhhhcccC---cCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC
Confidence 00 000111223 2678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHH
Q psy744 256 GHLVDIFAKFDVI 268 (405)
Q Consensus 256 g~lvGivt~~Dl~ 268 (405)
|+++|+||..|+.
T Consensus 109 ~~~vGiit~~di~ 121 (123)
T cd04627 109 GNLIGNISVTDVR 121 (123)
T ss_pred CcEEEEEeHHHhh
Confidence 9999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=97.61 Aligned_cols=104 Identities=23% Similarity=0.339 Sum_probs=88.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++.+||++++++++|+++..+++.... +.++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~-------~~~~~~~------~~~~~~~v~~~ 68 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE-------EEQLALL------MTRDPPTVSPD 68 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc-------cchHHHH------hcCCCceECCC
Confidence 4678889999999999999889999999998899999999999975311 1223343 44678889999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 69 ~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 69 DDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred CCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999999999998 589999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=121.72 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=111.3
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD-SEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
.+.+++++|... .++..++.+.++.++.+.+.+.+++++||++ +.+.++|++..+|++.....+.. .. ....
T Consensus 204 ~~~~v~eiMtPR-~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~--~~~~--- 276 (429)
T COG1253 204 DDRTVREIMTPR-TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL--DLRV--- 276 (429)
T ss_pred CCcEeeeEeeec-ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc--chhh---
Confidence 366899999764 7899999999999999999999999999999 45789999999999998876631 01 1111
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~ 351 (405)
..++++.+++++++.++++.|.+.+.|...|+||+|.+.|+||..||++.++++-..++
T Consensus 277 ----~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 277 ----LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred ----cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 12488999999999999999999999999999999999999999999999997665443
|
|
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=100.05 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=96.1
Q ss_pred CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 94 s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
++++++++.+.++.+|++.|.++++..+||+|++ ++++|+++..|++..+....... ...
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~-----~~~-------------- 60 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRP-----LRG-------------- 60 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccch-----hhh--------------
Confidence 4678899999999999999999999999999987 89999999999986543210000 000
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
++ . ......++.++| .+++.++.+++++.++++.|.+.+.+.+||+|
T Consensus 61 ----------------------~~----~----~~~~~~~i~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 61 ----------------------RL----R----GRDKPETVGDIM---SPPVVTVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred ----------------------hh----h----cccccccHHHhc---cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 00 0 000122456666 36789999999999999999999999999999
Q ss_pred CCCcEEEEEeHHHHHH
Q psy744 254 SEGHLVDIFAKFDVIN 269 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~ 269 (405)
++|+++|+++..|+++
T Consensus 108 ~~g~~~Gvit~~di~~ 123 (124)
T cd04600 108 EDRRLVGIVTQTDLIA 123 (124)
T ss_pred CCCCEEEEEEhHHhhc
Confidence 8899999999999875
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >KOG1764|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-11 Score=115.89 Aligned_cols=178 Identities=20% Similarity=0.272 Sum_probs=135.1
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCC------CCHHHHhh--------
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSS------ITMEELEE-------- 160 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~------~~~~~l~~-------- 160 (405)
...+.+.+..++.+|...+.+++++.+||.|.+.+.+.+++|..-+++++..+..... .++.++..
T Consensus 162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~ 241 (381)
T KOG1764|consen 162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIAS 241 (381)
T ss_pred CCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhhee
Confidence 3349999999999999999999999999999777899999999999999876544322 12222111
Q ss_pred ----ccH---HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHh-hCCCCCccccccccccccccccCCeeEEcCCC
Q psy744 161 ----HKL---ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLY-INDLPKPSFLNKTLRDLKIGTYENVETVAEET 232 (405)
Q Consensus 161 ----~~i---~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 232 (405)
.++ ...|..+++..+||++..|+.+|+++..|+....... ++...... ........+. ...+++++.++.
T Consensus 242 i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~-l~~~~~~~~~-~~~~vvtc~~~s 319 (381)
T KOG1764|consen 242 ISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSC-LSEALSHRPI-RFEGVVTCRPTS 319 (381)
T ss_pred ecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhH-HHHHhhhccc-ccCccEEEeecc
Confidence 011 1289999999999999989999999999999755421 11111110 0111111111 126689999999
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 233 SIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++.+++..|..+++++++|||++|.++|+||..|++..+...
T Consensus 320 sL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 320 TLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred hHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 999999999999999999999999999999999999988765
|
|
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-11 Score=97.18 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=90.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++.+.++.+|++.|.+++.+.+||+|++ ++++|++|..|+++.+.... .+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~-~~------------------------ 56 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGL-SL------------------------ 56 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCC-Cc------------------------
Confidence 35778999999999999999999999999987 89999999999986543210 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ...+.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 57 -----------------------------------~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 98 (113)
T cd04607 57 -----------------------------------DDPVSEVM---NRNPITAKVGSSREEILALMRERSIRHLPILDEE 98 (113)
T ss_pred -----------------------------------CCCHHHhh---cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC
Confidence 11344444 2567789999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||.+|++.
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04607 99 GRVVGLATLDDLLS 112 (113)
T ss_pred CCEEEEEEhHHhcc
Confidence 99999999999863
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=118.26 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=102.3
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.|+|.....+++++++.++.+|++.|.+++...+||+|++ ++++|++|..|+.+.+.... .
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~-~------------- 260 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGG-A------------- 260 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCC-C-------------
Confidence 56788999443338999999999999999999999999999987 89999999999986443110 0
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
...++.++| .+++.++.+++++.++++.|.+
T Consensus 261 ----------------------------------------------~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~ 291 (321)
T PRK11543 261 ----------------------------------------------LTTPVNEAM---TRGGTTLQAQSRAIDAKEILMK 291 (321)
T ss_pred ----------------------------------------------cCCcHHHhc---CCCCEEECCCCCHHHHHHHHHH
Confidence 022455666 3678899999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINL 270 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~ 270 (405)
++...+||+|++|+++|+||..|++++
T Consensus 292 ~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 292 RKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred cCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999988999999999999864
|
|
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=96.49 Aligned_cols=111 Identities=24% Similarity=0.356 Sum_probs=91.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|++ ++++|+++..|+++.+.......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~------------------------ 56 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASA------------------------ 56 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCc------------------------
Confidence 56789999999999999999999999999987 89999999999987654210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++.++.++.++.++++.|.+.+.+.+||+++
T Consensus 57 ----------------------------------~~~~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~- 98 (113)
T cd04623 57 ----------------------------------LDTPVSEIM---TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG- 98 (113)
T ss_pred ----------------------------------cccCHHHhc---CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-
Confidence 012345555 257889999999999999999999999999987
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|+++
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04623 99 GKLVGIVSIGDVVK 112 (113)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=101.38 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=91.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+......+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~------------------------ 57 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQP------------------------ 57 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCC------------------------
Confidence 56889999999999999999999999999987 89999999999986554321111
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH---------hcCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL---------ERRV 246 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~---------~~~~ 246 (405)
..++.++| .+++.++.+++++.++.+++. +.+.
T Consensus 58 -----------------------------------~~~v~~im---~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (124)
T cd04608 58 -----------------------------------SDPVSKAL---YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQIS 99 (124)
T ss_pred -----------------------------------CCcHHHHh---hccceecCCCCCHHHHHhhcccCCceEEEecccc
Confidence 23566777 377889999999999998653 3356
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHH
Q psy744 247 SALPMTDSEGHLVDIFAKFDVINL 270 (405)
Q Consensus 247 ~~lpVvd~~g~lvGivt~~Dl~~~ 270 (405)
.++||+|++|+++|+||.+|++++
T Consensus 100 ~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 100 SAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred ccccccccccceEEEEehhHhhhh
Confidence 778899988999999999999875
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=95.32 Aligned_cols=108 Identities=26% Similarity=0.338 Sum_probs=90.0
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++++++.++.++.+|++.|.+++...+||+|++ ++++|++|..|+++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~-------------------------- 54 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK-------------------------- 54 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc--------------------------
Confidence 567889999999999999999999999999987 89999999999985443210
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..+.+++ ..++.++.+++++.++++.|.+.+...+||+++
T Consensus 55 -------------------------------------~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 94 (110)
T cd04605 55 -------------------------------------KSVEDIM---TRNVITATPDEPIDVAARKMERHNISALPVVDA 94 (110)
T ss_pred -------------------------------------cCHHHhc---CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC
Confidence 0122333 256788999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++..|+++
T Consensus 95 ~~~~~G~v~~~di~~ 109 (110)
T cd04605 95 ENRVIGIITSEDISK 109 (110)
T ss_pred CCcEEEEEEHHHhhh
Confidence 899999999999864
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=118.00 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=105.8
Q ss_pred HHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHH
Q psy744 78 FVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEE 157 (405)
Q Consensus 78 ~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~ 157 (405)
..+.++..+..++| ..+++++.++.++.+|++.|.++++.++||+|++ ++++|++|..|+... .+
T Consensus 82 q~~~l~~VKv~~iM--i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~------~~------ 146 (479)
T PRK07807 82 VAEVVAWVKSRDLV--FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGV------DR------ 146 (479)
T ss_pred HHHHHhhccccccc--ccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcC------cc------
Confidence 34455666778888 6789999999999999999999999999999976 899999999998410 00
Q ss_pred HhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHH
Q psy744 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHA 237 (405)
Q Consensus 158 l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a 237 (405)
..++.++| ..+++++++++++.+|
T Consensus 147 -----------------------------------------------------~~~V~diM---t~~~itV~~d~sL~eA 170 (479)
T PRK07807 147 -----------------------------------------------------FTQVRDVM---STDLVTLPAGTDPREA 170 (479)
T ss_pred -----------------------------------------------------CCCHHHhc---cCCceEECCCCcHHHH
Confidence 11455666 3688999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 238 LRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 238 ~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++.|.++++..+||+|++|+++|+||.+||++.....
T Consensus 171 l~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 171 FDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 9999999999999999889999999999999876543
|
|
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-11 Score=96.30 Aligned_cols=111 Identities=19% Similarity=0.307 Sum_probs=91.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.+++...+||+|++ ++++|+++..|+.+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~------------------------ 56 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGE------------------------ 56 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccc------------------------
Confidence 35688999999999999999999999999987 89999999999986543210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.++| ..++.++.+++++.++++.|.+++...+||+|++
T Consensus 57 -----------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~ 98 (115)
T cd04593 57 -----------------------------------PSAVDEVA---TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG 98 (115)
T ss_pred -----------------------------------cccHHHhc---cCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC
Confidence 11234444 2678899999999999999999999999999987
Q ss_pred --CcEEEEEeHHHHHH
Q psy744 256 --GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 --g~lvGivt~~Dl~~ 269 (405)
|+++|+||.+|+++
T Consensus 99 ~~~~~~Gvit~~di~~ 114 (115)
T cd04593 99 NPGQVLGLLTRENVLL 114 (115)
T ss_pred CCCeEEEEEEhHHhhc
Confidence 79999999999975
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=121.78 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=98.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
..+++++| .+++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+++.+.... ...+.++.++
T Consensus 334 ~~~v~~im---~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~i---- 405 (454)
T TIGR01137 334 NATVKDLH---LPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-ANPDDAVSKV---- 405 (454)
T ss_pred cCCHHHhC---cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-CCcCCCHHHh----
Confidence 44677777 378999999999999999999999999999998899999999999998665431 1223456665
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
|..++.++++++++.++++.|.+++ .+||+++|+++|+||++||+++|
T Consensus 406 --m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 406 --MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 4467889999999999999998864 34455579999999999999986
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=121.14 Aligned_cols=177 Identities=21% Similarity=0.207 Sum_probs=128.2
Q ss_pred cccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHH
Q psy744 87 CYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN 166 (405)
Q Consensus 87 ~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~ 166 (405)
..|+| ..++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|+.... ..
T Consensus 89 ~~dim--~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~DL~~~~-----~~--------------- 145 (486)
T PRK05567 89 SESGV--VTDPVTVTPDTTLAEALALMARYGISGVPVVDEN-GKLVGIITNRDVRFET-----DL--------------- 145 (486)
T ss_pred hhhcc--cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-CEEEEEEEHHHhhhcc-----cC---------------
Confidence 44666 5789999999999999999999999999999976 8999999999985210 00
Q ss_pred HHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCC
Q psy744 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRV 246 (405)
Q Consensus 167 l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 246 (405)
..++.++|. .++++++.+++++.++++.|.++++
T Consensus 146 --------------------------------------------~~~V~dim~--~~~~v~v~~~~sl~eal~~m~~~~~ 179 (486)
T PRK05567 146 --------------------------------------------SQPVSEVMT--KERLVTVPEGTTLEEALELLHEHRI 179 (486)
T ss_pred --------------------------------------------CCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHcCC
Confidence 113444552 1578899999999999999999999
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc-
Q psy744 247 SALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD- 325 (405)
Q Consensus 247 ~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd- 325 (405)
+.+||+|++|+++|+||.+|+++...... . .... .........+...+ .-.+..+.|.+.+++.+ |+|
T Consensus 180 ~~lpVVDe~g~lvGiIT~~DLl~~~~~p~---a--~~d~---~g~l~V~aai~~~~--~~~e~a~~L~~agvdvi-vvD~ 248 (486)
T PRK05567 180 EKLPVVDDNGRLKGLITVKDIEKAEEFPN---A--CKDE---QGRLRVGAAVGVGA--DNEERAEALVEAGVDVL-VVDT 248 (486)
T ss_pred CEEEEEcCCCcEEEEEEhHHhhhhhhCCC---c--cccc---CCCEEEEeecccCc--chHHHHHHHHHhCCCEE-EEEC
Confidence 99999999999999999999998764211 0 0000 00001112222333 22778888999999855 555
Q ss_pred CCCcEEEEEeHHHHHHHH
Q psy744 326 EDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 326 ~~g~lvGiIt~~DIl~~l 343 (405)
.+|+..|+++.-+.++.-
T Consensus 249 a~g~~~~vl~~i~~i~~~ 266 (486)
T PRK05567 249 AHGHSEGVLDRVREIKAK 266 (486)
T ss_pred CCCcchhHHHHHHHHHhh
Confidence 458887877666666543
|
|
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=116.44 Aligned_cols=123 Identities=14% Similarity=0.259 Sum_probs=100.7
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.|+|.+..+++++++++++.+|++.|.++++..+||+|++ ++++|++|..|+.+.+....
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~--------------- 264 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGI--------------- 264 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCC---------------
Confidence 44678888433389999999999999999999999888888876 89999999999875332100
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
.+...++.++| .+++.++.+++++.+|++.|.+
T Consensus 265 --------------------------------------------~~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~ 297 (326)
T PRK10892 265 --------------------------------------------DLRQASIADVM---TPGGIRVRPGILAVDALNLMQS 297 (326)
T ss_pred --------------------------------------------CcccCCHHHhc---CCCCEEECCCCCHHHHHHHHHH
Confidence 00123577777 3688999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINL 270 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~ 270 (405)
++++.+||++ +|+++|+||..|++++
T Consensus 298 ~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 298 RHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 9999999998 5899999999999864
|
|
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=93.89 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=89.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++..+.++.+|++.|.+++...+||++++.++++|++|..|+++...... ..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~~----------------------- 56 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--ED----------------------- 56 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--Cc-----------------------
Confidence 57889999999999999999999999999875478999999999986553210 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..+..++ .++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 57 ------------------------------------~~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04590 57 ------------------------------------LDLRDLL----RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEY 96 (111)
T ss_pred ------------------------------------CCHHHHh----cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECC
Confidence 0122222 356788999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 97 ~~~~Gvit~~di~~ 110 (111)
T cd04590 97 GGTAGLVTLEDILE 110 (111)
T ss_pred CCEEEEeEHHHhhc
Confidence 99999999999864
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-11 Score=96.17 Aligned_cols=114 Identities=19% Similarity=0.433 Sum_probs=90.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.++++.+|++.|.++++..+||+|++ ++++|+++..|+++++.... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~---~~~~~~------------------ 59 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLE---NLDLER------------------ 59 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccC---chhHHH------------------
Confidence 57899999999999999999999999999986 89999999999987653210 000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+...++.++| ...+.++.+++++.++++.|.+.+ .+||+|++
T Consensus 60 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~ 101 (116)
T cd04643 60 ---------------------------------LVDLKVIDVM---NTDVPVIIDDADIEEILHLLIDQP--FLPVVDDD 101 (116)
T ss_pred ---------------------------------HhCCcHHHHh---cCCCceecCCCCHHHHHHHHhcCC--ceeEEeCC
Confidence 0022455555 357889999999999999998754 59999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 102 ~~~~Gvit~~dil~ 115 (116)
T cd04643 102 GIFIGIITRREILK 115 (116)
T ss_pred CeEEEEEEHHHhhc
Confidence 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=93.95 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=90.4
Q ss_pred eEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEE
Q psy744 97 LVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLP 176 (405)
Q Consensus 97 vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lp 176 (405)
..++.++.++.+|++.|.+++...+||+|.+ ++++|++|..|+.+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~--------------------------- 54 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEE--------------------------- 54 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhh---------------------------
Confidence 5788999999999999999999999999987 899999999999854322100
Q ss_pred EEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCC
Q psy744 177 VIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEG 256 (405)
Q Consensus 177 Vvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 256 (405)
+...++.++| ..++.++.+++++.++++.|.+.+...+||+|++|
T Consensus 55 --------------------------------~~~~~i~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g 99 (113)
T cd04615 55 --------------------------------LKDAKVREVM---NSPVITIDANDSIAKARWLMSNNNISRLPVLDDKG 99 (113)
T ss_pred --------------------------------hcCCcHHHhc---cCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCC
Confidence 0012344444 25788899999999999999999999999999889
Q ss_pred cEEEEEeHHHHHH
Q psy744 257 HLVDIFAKFDVIN 269 (405)
Q Consensus 257 ~lvGivt~~Dl~~ 269 (405)
+++|+++..|+++
T Consensus 100 ~~~Gvvt~~dl~~ 112 (113)
T cd04615 100 KVGGIVTEDDILR 112 (113)
T ss_pred eEEEEEEHHHhhc
Confidence 9999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=99.27 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=81.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchh----------hhHHHhhh---cc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLD----------VTLKEANE---HK 290 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~----------~~v~~~~~---~~ 290 (405)
++.++.+++++.+|++.|.+.+++.+||+|++|+++|+++..|+++........... ..+.+++. ..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 578999999999999999999999999999999999999999999877643211100 11223321 01
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED 327 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 327 (405)
+.|..+++++.+++++.+|++.|.+++++.+||+|++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 1234678899999999999999999999999999854
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=99.69 Aligned_cols=133 Identities=20% Similarity=0.296 Sum_probs=96.8
Q ss_pred CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 94 s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
|+++.+++++.++.+|++.|.++++..+||+|++ ++++|+++..|+.+.+...+..+. ...+.. .
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~--~~~~~~-------~----- 65 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRR--ARWLDL-------L----- 65 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchh--hhHHHH-------h-----
Confidence 4578899999999999999999999999999987 899999999999975543211000 000000 0
Q ss_pred EEEEEeCCCCEEEEEeHHHH-HHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE
Q psy744 174 RLPVIDEMGNVLYILTHKRI-LRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dI-l~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 252 (405)
.. ..+. ..+.. ....++.++| ..++.++.+++++.++++.|.+.+.+.+||+
T Consensus 66 ------~~--------~~~~~~~~~~----------~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv 118 (135)
T cd04586 66 ------AG--------AEELAAAFVR----------SHGRKVADVM---TRPVVTVGEDTPLAEVAELMEEHRIKRVPVV 118 (135)
T ss_pred ------cc--------hHHHHHHHHH----------hcCCCHHHHh---CCCceEeCCCCcHHHHHHHHHHcCCCccCEe
Confidence 00 0000 00000 0123566666 3678999999999999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHH
Q psy744 253 DSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~ 269 (405)
| +|+++|++|..|+++
T Consensus 119 d-~g~~~Gvit~~di~~ 134 (135)
T cd04586 119 R-GGRLVGIVSRADLLR 134 (135)
T ss_pred c-CCEEEEEEEhHhhhc
Confidence 9 899999999999875
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-11 Score=95.96 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=87.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcC-CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNG-IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~-i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++.+++++.++.+|++.|.+++ ...+||+|.+ ++++|+++..|++....... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~--~----------------------- 55 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQW--A----------------------- 55 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhc--c-----------------------
Confidence 5678899999999999998775 8899999987 89999999999886442110 0
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.++|.. ...+.++.+++++.++++.|.+++.+.+||+|+
T Consensus 56 ------------------------------------~~~v~~~~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 56 ------------------------------------QTTVIQVMTP-AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED 98 (114)
T ss_pred ------------------------------------ccchhhhhcc-cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC
Confidence 1123333310 123568899999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++.+|+++
T Consensus 99 ~~~~~Gvl~~~di~~ 113 (114)
T cd04801 99 SGQVIGLITEADLLR 113 (114)
T ss_pred CCcEEEEEeccceec
Confidence 899999999999864
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=95.81 Aligned_cols=123 Identities=30% Similarity=0.408 Sum_probs=94.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|.+.++++|+++..|++.++..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~--------------------- 60 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIK--------------------- 60 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcccc---------------------
Confidence 56889999999999999999999999999985589999999999997654211000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.. .+ ......++.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 61 -~~--~~------------------------~~~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~ 110 (125)
T cd04631 61 -TG--NG------------------------LEAINEPVRSIM---TRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD 110 (125)
T ss_pred -cc--cc------------------------chhhhcCHHHHh---cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCC
Confidence 00 00 000123455555 2678999999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 111 ~~~~Gvit~~di~~ 124 (125)
T cd04631 111 GKLVGIVTERDLLK 124 (125)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=94.70 Aligned_cols=94 Identities=16% Similarity=0.283 Sum_probs=77.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++++++++.+|++.|.++++..+||+|++ ++++|++|..|+........-.+..++.+.. ..|.+++++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~v~~~~~l~~a~-----~~m~~~~~~~l 75 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSEVVTATKRTTVSECA-----QKMKRNRIEQI 75 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCCcEEecCCCCHHHHH-----HHHHHhCCCee
Confidence 56889999999999999999999999999987 8999999999998654311223334444443 38999999999
Q ss_pred EEEeCCCCEEEEEeHHHHHH
Q psy744 176 PVIDEMGNVLYILTHKRILR 195 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~ 195 (405)
||++++|+++|++|.+|+++
T Consensus 76 pVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 76 PIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred eEECCCCcEEEEEEHHHhhc
Confidence 99998899999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=94.71 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=94.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|++ ++++|+++..|+.+.+........ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~------~---------------- 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNG------E---------------- 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhcccccccc------c----------------
Confidence 56889999999999999999999999999987 899999999999876542211000 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+.. ......++.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 59 ------~~~----------------------~~~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 107 (122)
T cd04803 59 ------ESL----------------------TKERDVPVAEVM---KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK 107 (122)
T ss_pred ------ccc----------------------ccccCcCHHHhh---CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence 000 000122455555 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|++.
T Consensus 108 ~~~~Gvit~~dl~~ 121 (122)
T cd04803 108 GTLVGIITRSDFLR 121 (122)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=93.90 Aligned_cols=110 Identities=16% Similarity=0.283 Sum_probs=87.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcC-CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNG-IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~-i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++.+++.+.++.+|++.|.+++ ...+||.|. ++++|+++..|+++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~------------------------ 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDL------------------------ 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCc------------------------
Confidence 4578899999999999999888 677787774 8999999999998654321000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCC--CCHHHHHHHHHhcCCCEEEEE
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEE--TSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVv 252 (405)
...++.++| ..++.++.++ +++.++++.|.+++...+||+
T Consensus 56 -----------------------------------~~~~i~~~~---~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv 97 (115)
T cd04620 56 -----------------------------------SDLPIGEVM---TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVL 97 (115)
T ss_pred -----------------------------------cccCHHHhc---CCCcEEEecccccCHHHHHHHHHHhCCceEEEE
Confidence 012344454 2567778776 789999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHH
Q psy744 253 DSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~ 269 (405)
|++|+++|+||.+|+++
T Consensus 98 d~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 98 DDQGQLIGLVTAESIRQ 114 (115)
T ss_pred cCCCCEEEEEEhHHhhc
Confidence 98899999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=94.32 Aligned_cols=105 Identities=22% Similarity=0.235 Sum_probs=88.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|.+ ++++|+++..|++... +
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~------~------------------------ 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD------P------------------------ 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc------c------------------------
Confidence 46789999999999999999999999999986 8999999999987310 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ..++.++.+++++.++++.|.+.+...+||+|++
T Consensus 52 -----------------------------------~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 93 (108)
T cd04596 52 -----------------------------------DTTIEKVM---TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN 93 (108)
T ss_pred -----------------------------------cccHHHHh---cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC
Confidence 11233444 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 94 ~~~~G~it~~di~~ 107 (108)
T cd04596 94 KKLLGIISRQDVLK 107 (108)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999874
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=93.76 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=89.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++++.++.+|++.|.+.+...+||+|.+ ++++|+++..|+.+.+.... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~--~------------------------ 54 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGG--P------------------------ 54 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcC--C------------------------
Confidence 45778999999999999999999999999986 88999999999986554210 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ..++.++.+++++.++++.|.+++...+||+|++
T Consensus 55 -----------------------------------~~~v~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04639 55 -----------------------------------DAPVRGVM---RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS 96 (111)
T ss_pred -----------------------------------CCcHHHHh---cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC
Confidence 11233444 2577899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+..
T Consensus 97 ~~~~G~it~~dl~~ 110 (111)
T cd04639 97 GRLVGLVTLENVGE 110 (111)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=94.12 Aligned_cols=111 Identities=21% Similarity=0.289 Sum_probs=91.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|+++..|+.+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~-------------------------- 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL-------------------------- 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc--------------------------
Confidence 56789999999999999999999999999987 899999999999865421100
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC-
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS- 254 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~- 254 (405)
....++.+++ ..++.++.+++++.++++.|...+.+.+||+|+
T Consensus 55 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 98 (114)
T cd04613 55 ---------------------------------YDLVVASDIM---TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD 98 (114)
T ss_pred ---------------------------------cccEEHHHhc---cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC
Confidence 0012445555 267889999999999999999999999999997
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++..|++.
T Consensus 99 ~~~~~Gvvt~~di~~ 113 (114)
T cd04613 99 PGKLLGILSRSDLLS 113 (114)
T ss_pred CCEEEEEEEhHHhhc
Confidence 789999999999874
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=92.52 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=87.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.++++..+||+|++ ++++|+++..|+......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~----------------------------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE----------------------------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------------------------
Confidence 46778999999999999999999999999987 889999999998853311
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.++| ...+.++.+++++.++++.|.+.+..++||++++
T Consensus 53 -----------------------------------~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~ 94 (109)
T cd04583 53 -----------------------------------AKSLEDIM---LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED 94 (109)
T ss_pred -----------------------------------CCcHhHhh---cCCceEECCCCcHHHHHHHHHHcCCceeeEECCC
Confidence 01223333 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 95 g~~~Gvit~~~l~~ 108 (109)
T cd04583 95 GKLVGLITRSSLVD 108 (109)
T ss_pred CeEEEEEehHHhhc
Confidence 99999999999864
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-11 Score=122.30 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=107.4
Q ss_pred HHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHH
Q psy744 78 FVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEE 157 (405)
Q Consensus 78 ~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~ 157 (405)
-++.++..++.|+| .++..+++++.++.+|.+.|.+++.+.+||+|++ ++++|++|..|+.+.+......
T Consensus 440 ~~~~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~------- 509 (574)
T PRK01862 440 ERERLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDT------- 509 (574)
T ss_pred hhhHHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhccccc-------
Confidence 35567788999999 5567889999999999999999999999999987 8999999999998644221000
Q ss_pred HhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHH
Q psy744 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHA 237 (405)
Q Consensus 158 l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a 237 (405)
...++.++| .+++.++++++++.++
T Consensus 510 ----------------------------------------------------~~~~v~dim---~~~~~~v~~d~~L~~a 534 (574)
T PRK01862 510 ----------------------------------------------------TDKTAADYA---HTPFPLLTPDMPLGDA 534 (574)
T ss_pred ----------------------------------------------------ccchHHHhc---cCCCeeECCCCCHHHH
Confidence 012445555 3677899999999999
Q ss_pred HHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHHHHHh
Q psy744 238 LRKFLERRVSALPMTDSE--GHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 238 ~~~m~~~~~~~lpVvd~~--g~lvGivt~~Dl~~~~~~ 273 (405)
++.|.+++.+.+||+|++ ++++|+||.+|+++.+.+
T Consensus 535 l~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 535 LEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999876 589999999999988654
|
|
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=92.78 Aligned_cols=110 Identities=15% Similarity=0.273 Sum_probs=90.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++...+||+|++ ++++|++|..|+++.+.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~-~------------------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGI-D------------------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccC-C-------------------------
Confidence 46788999999999999999999999999987 89999999999986543210 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....+.++| ..++.++.+++++.++++.|.+++...+||++++
T Consensus 55 ----------------------------------~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 97 (112)
T cd04624 55 ----------------------------------LDTPVSEIM---TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG 97 (112)
T ss_pred ----------------------------------CccCHHHhc---cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCC
Confidence 011344444 2568899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 98 g~~~Gilt~~dl~~ 111 (112)
T cd04624 98 GELVGVISIRDLVR 111 (112)
T ss_pred CcEEEEEEHHHhcc
Confidence 99999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=92.50 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=85.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.+++...+||+|++ ++++|++|..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~------------------------------ 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG------------------------------ 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc------------------------------
Confidence 45788899999999999999999999999876 89999999999884210
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.++.+++ .+.+..+.+++++.++++.|.+++...+||+|++
T Consensus 51 ------------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 91 (106)
T cd04582 51 ------------------------------------GCCGDHA---EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED 91 (106)
T ss_pred ------------------------------------cchhhhc---ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCC
Confidence 0122222 2456778999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|++.
T Consensus 92 ~~~~Gvi~~~~l~~ 105 (106)
T cd04582 92 GRYVGEVTQRSIAD 105 (106)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999864
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=92.39 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=90.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.+|++.|.+++...+||+|. ++++|+++..|++..+......+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~------------------------ 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDP------------------------ 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCc------------------------
Confidence 5678999999999999999999999999996 89999999999985332110000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.+++ ..++.++.+++++.++++.|.+++...+||++++
T Consensus 56 ----------------------------------~~~~v~~i~---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~ 98 (113)
T cd04587 56 ----------------------------------ESTLVERVM---TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS 98 (113)
T ss_pred ----------------------------------CcCCHHHhc---CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC
Confidence 012455555 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|++.
T Consensus 99 ~~~~Gvvs~~dl~~ 112 (113)
T cd04587 99 GQVVGLLDVTKLTH 112 (113)
T ss_pred CCEEEEEEHHHhcc
Confidence 99999999999864
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=96.29 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=94.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCC--CCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSS--SITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~--~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
+++++..+.++.+|++.|.+++...+||+|++ ++++|+++..|+++.+....... ..+ ..+. .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~-~~~~-----~-------- 66 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKS-IKMK-----R-------- 66 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhh-hhhh-----h--------
Confidence 45778999999999999999999999999987 89999999999997654211000 000 0000 0
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCC-C-ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEE
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLP-K-PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~-~-~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 251 (405)
...... . ......++.++| ..++..+.+++++.++++.|.+.+.+.+||
T Consensus 67 --------------------------~~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~V 117 (135)
T cd04621 67 --------------------------KAGQKRYRYVKEVPLVAEDIM---TEEIITVSPNDDVVDAAKLMLEANISGLPV 117 (135)
T ss_pred --------------------------hcccccccccccccccHHHhc---CCCCeEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 000000 0 001133577777 367889999999999999999999999999
Q ss_pred ECCCCcEEEEEeHHHHHH
Q psy744 252 TDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~ 269 (405)
+++ |+++|+|+..|+++
T Consensus 118 v~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 118 VDN-DNIVGVITKTDICR 134 (135)
T ss_pred EeC-CEEEEEEEHHHHhh
Confidence 986 89999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=92.95 Aligned_cols=112 Identities=27% Similarity=0.340 Sum_probs=90.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+++.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~------------------------ 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHC------------------------ 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhcc------------------------
Confidence 46789999999999999999999999999987 89999999999986553210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.++| ..++.++.+++++.++++.|.+++.+.+||+|+
T Consensus 57 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 99 (114)
T cd04629 57 ---------------------------------DGVATVRDIM---TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD- 99 (114)
T ss_pred ---------------------------------CCCccHHHHh---ccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-
Confidence 0012344454 256788999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 100 ~~~~Gvit~~di~~ 113 (114)
T cd04629 100 GKLVGQISRRDVLR 113 (114)
T ss_pred CEEEEEEEHHHHhc
Confidence 89999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=92.76 Aligned_cols=109 Identities=21% Similarity=0.361 Sum_probs=89.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFES--------------------------- 53 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcc---------------------------
Confidence 56789999999999999999999999999987 89999999999985432110
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.++| .+++.++.+++++.++++.|.+++...+||+|+
T Consensus 54 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 96 (111)
T cd04626 54 ---------------------------------FLEKKVFNIV---SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD- 96 (111)
T ss_pred ---------------------------------cccCcHHHHh---cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-
Confidence 0012344444 267889999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|++.
T Consensus 97 ~~~~G~it~~di~~ 110 (111)
T cd04626 97 NKLIGVVRTKDILD 110 (111)
T ss_pred CEEEEEEEhHHhcc
Confidence 89999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-10 Score=92.34 Aligned_cols=120 Identities=19% Similarity=0.331 Sum_probs=93.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|+ ++++|+++..|+.+.+............++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~---------------- 63 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLA---------------- 63 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHH----------------
Confidence 5688999999999999999999999999996 8999999999999766542211110000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.+++ ..+++.+.+++++.++++.|.+++...+||+|++
T Consensus 64 ---------------------------------~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~ 107 (122)
T cd04637 64 ---------------------------------TLNRRAHQIM---TRDPITVSPDTPVDEASKLLLENSISCLPVVDEN 107 (122)
T ss_pred ---------------------------------HHHhHHHHhh---cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC
Confidence 0012345555 2678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 108 ~~~~Gvit~~dll~ 121 (122)
T cd04637 108 GQLIGIITWKDLLK 121 (122)
T ss_pred CCEEEEEEHHHhhh
Confidence 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=92.10 Aligned_cols=111 Identities=21% Similarity=0.324 Sum_probs=91.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.++.+.|.+.+...+||+|.+ ++++|+++..++.+.+.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~------------------------ 57 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDIL------------------------ 57 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccc------------------------
Confidence 45678999999999999999899999999987 89999999999987654321000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.++| ..++.++.+++++.++++.|.+.+...+||++++
T Consensus 58 -----------------------------------~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 99 (114)
T cd04604 58 -----------------------------------TLPVADVM---TRNPKTIDPDALAAEALELMEENKITALPVVDDN 99 (114)
T ss_pred -----------------------------------cCCHHHhh---ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 11344454 2567789999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|+++
T Consensus 100 ~~~iG~it~~di~~ 113 (114)
T cd04604 100 GRPVGVLHIHDLLR 113 (114)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999974
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=95.29 Aligned_cols=120 Identities=22% Similarity=0.327 Sum_probs=92.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|.+ ++++|+++..|+++..... ... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~--~~~---~~~~---------------- 59 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVR--TSV---EDQQ---------------- 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhcccc--ccc---cchh----------------
Confidence 57889999999999999999999999999987 8999999999998542100 000 0000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
. .. .....++.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 60 -----------------~----~~--------~~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~ 107 (122)
T cd04635 60 -----------------R----TQ--------TKASPTVEKIM---STPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK 107 (122)
T ss_pred -----------------h----hh--------hhccCcHHHHh---cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC
Confidence 0 00 00122455555 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 108 g~~~Gvit~~dl~~ 121 (122)
T cd04635 108 DQLVGIVDRHDVLK 121 (122)
T ss_pred CcEEEEEEhHHhhc
Confidence 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=94.41 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=93.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+...+........ .....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~--~~~~~---------------- 62 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKAR--TGDRS---------------- 62 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcc--hhhhh----------------
Confidence 56789999999999999999999999999987 899999999999876532110000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC--
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD-- 253 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-- 253 (405)
.. .......++.++| ..+++++.+++++.++++.|.+.+...+||++
T Consensus 63 ---------------~~-------------~~~~~~~~~~~~~---~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~ 111 (128)
T cd04632 63 ---------------GE-------------KERMLDLPVYDAM---SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD 111 (128)
T ss_pred ---------------hh-------------hhhhccCcHHHHh---cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC
Confidence 00 0001123456666 36788999999999999999999999999984
Q ss_pred CCCcEEEEEeHHHHHH
Q psy744 254 SEGHLVDIFAKFDVIN 269 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~ 269 (405)
++|+++|+||.+|+++
T Consensus 112 ~~~~~~Gvit~~di~~ 127 (128)
T cd04632 112 DDTKVVGILTKKDVLR 127 (128)
T ss_pred CCCcEEEEEEhHhhhc
Confidence 4689999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=90.31 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=90.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.+++...+||+|+ ++++|+++..|+.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-------------------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-------------------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC--------------------------
Confidence 4678999999999999999999999999987 899999999999865532100
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 54 ----------------------------------~~~~v~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04611 54 ----------------------------------LQTPVGEVM---SSPLLTVPADTSLYDARQLMREHGIRHLVVVDDD 96 (111)
T ss_pred ----------------------------------CCcCHHHhc---CCCceEECCCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 012344444 2578889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 97 ~~~~Gvi~~~di~~ 110 (111)
T cd04611 97 GELLGLLSQTDLLQ 110 (111)
T ss_pred CcEEEEEEhHHhhc
Confidence 99999999999874
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-10 Score=89.88 Aligned_cols=108 Identities=23% Similarity=0.387 Sum_probs=89.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.+++++.+||+|+ ++++|+++..|+++...... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--~------------------------ 53 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--E------------------------ 53 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--c------------------------
Confidence 5688999999999999999999999999998 79999999999986533210 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ..++.++.++.++.++++.|.+.+...+||++++
T Consensus 54 -----------------------------------~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~ 95 (110)
T cd04588 54 -----------------------------------LAKVKDVM---TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE 95 (110)
T ss_pred -----------------------------------ccCHHHHh---cCCceEECCCCCHHHHHHHHHhcCCCEEEEECCC
Confidence 01233343 2578899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 96 ~~~~G~i~~~dl~~ 109 (110)
T cd04588 96 GRPVGIITRTDILR 109 (110)
T ss_pred CCEEEEEEhHHhhc
Confidence 99999999999874
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=110.56 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=103.8
Q ss_pred HHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHH
Q psy744 78 FVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEE 157 (405)
Q Consensus 78 ~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~ 157 (405)
..+.++..+.+++| ..+++++.++.++.+|++.|.++++..+||+|+ ++++|++|..|+... ..
T Consensus 81 qae~v~~VKv~eim--~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~------~~------ 144 (475)
T TIGR01303 81 VKQTVAFVKSRDLV--LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV------DR------ 144 (475)
T ss_pred HHHHHhhcchhhcc--ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC------CC------
Confidence 34455666777887 567899999999999999999999999999986 689999999997410 00
Q ss_pred HhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHH
Q psy744 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHA 237 (405)
Q Consensus 158 l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a 237 (405)
..++.++| ..+++++.+++++.+|
T Consensus 145 -----------------------------------------------------~~~V~dIM---t~~litv~~~~sL~eA 168 (475)
T TIGR01303 145 -----------------------------------------------------FTQVRDIM---STDLVTAPADTEPRKA 168 (475)
T ss_pred -----------------------------------------------------CCCHHHHc---cCCceEeCCCCcHHHH
Confidence 12456666 3688999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 238 LRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 238 ~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++|.++++..+||+|++|+++|+||.+||++.....
T Consensus 169 l~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 169 FDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 9999999999999999889999999999999866543
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-10 Score=90.23 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=89.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|.+.|.+++...+||+|+ ++++|+++..|++..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~------------------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLD------------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCC-------------------------
Confidence 5678999999999999999999999999997 8999999999998543311000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.+++ ..++.++.+++++.++++.|.+.+.+.+||+++
T Consensus 55 ----------------------------------~~~~i~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 96 (111)
T cd04800 55 ----------------------------------PDTPVSEVM---TAPPITIPPDATVFEALLLMLERGIHHLPVVDD- 96 (111)
T ss_pred ----------------------------------ccCCHHHHh---CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-
Confidence 011344444 257889999999999999999999999999987
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 97 ~~~~Giit~~di~~ 110 (111)
T cd04800 97 GRLVGVISATDLLR 110 (111)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=95.25 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=86.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHH--hhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQM--YYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~--~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
+++++..+.++.+|++.|.+++.+.+||+|++ ++++|+++..|+...... .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~---------------------- 58 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGG---------------------- 58 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcC----------------------
Confidence 46789999999999999999999999999987 899999999999852210 00000
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCe--eEE----cCCCCHHHHHHHHHhcCCC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENV--ETV----AEETSIIHALRKFLERRVS 247 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~v----~~~~~l~~a~~~m~~~~~~ 247 (405)
......+++++|. .+. ..+ .+++++.++++.|.+++.+
T Consensus 59 ---------------------------------~~~~~~~v~~im~---~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~ 102 (126)
T cd04640 59 ---------------------------------ISRSELTVADVMT---PKEDLKALDLEELENASVGDVVETLKASGRQ 102 (126)
T ss_pred ---------------------------------CCchheEHHHhcC---chhhhccccHHHhccCcHHHHHHHHHHCCCc
Confidence 0001224555552 222 222 3688999999999999999
Q ss_pred EEEEECCC-CcEEEEEeHHHHHH
Q psy744 248 ALPMTDSE-GHLVDIFAKFDVIN 269 (405)
Q Consensus 248 ~lpVvd~~-g~lvGivt~~Dl~~ 269 (405)
.+||+|++ |+++|+||..|+++
T Consensus 103 ~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 103 HALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred eEEEEECCCCEEEEEEeHHHHhh
Confidence 99999986 79999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-10 Score=89.89 Aligned_cols=108 Identities=20% Similarity=0.347 Sum_probs=90.0
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
+++++++.+.++.+|.+.|.+++...+||+|. ++++|+++..|+.+.+.... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--~----------------------- 54 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--G----------------------- 54 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--c-----------------------
Confidence 46789999999999999999999999999998 89999999999885442110 0
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.++| ..++.++.+++++.++++.|.+.+.+.+||++
T Consensus 55 ------------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~- 94 (110)
T cd04595 55 ------------------------------------HAPVKDYM---STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE- 94 (110)
T ss_pred ------------------------------------cCcHHHHh---cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-
Confidence 12344444 25778999999999999999999999999999
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+||..|+++
T Consensus 95 ~~~~~Gvvt~~di~~ 109 (110)
T cd04595 95 DGRLVGIVTRTDLLR 109 (110)
T ss_pred CCEEEEEEEhHHhhc
Confidence 789999999999864
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=92.26 Aligned_cols=120 Identities=25% Similarity=0.330 Sum_probs=93.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.++++..+||+|. ++++|+++..|+..+......... ..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~--~~~~~---------------- 61 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLD--IWELY---------------- 61 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccccc--chhhh----------------
Confidence 5678999999999999999999999999998 899999999999876532110000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.. ....++.++| .+++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 62 -------------------~~------------~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 107 (122)
T cd04585 62 -------------------YL------------LSKIKVSDIM---TRDPITVSPDASVEEAAELMLERKISGLPVVDDQ 107 (122)
T ss_pred -------------------hh------------hcccCHHHhc---cCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCC
Confidence 00 0022455555 2578899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 108 ~~~~Gvvt~~di~~ 121 (122)
T cd04585 108 GRLVGIITESDLFR 121 (122)
T ss_pred CcEEEEEEHHHhhh
Confidence 99999999999975
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-10 Score=94.83 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=95.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|+++..|++.++...........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~-------------------- 60 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTL-------------------- 60 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccc--------------------
Confidence 46789999999999999999999999999987 899999999999976653211000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.....+.. .+..+.+ ...++.+++ .+++..+.+++++.++++.|.+.+.+.+||+|+
T Consensus 61 ------~~~~~~~~-~~~~~~~------------~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~- 117 (132)
T cd04636 61 ------LYSVIFLD-ESKIKKL------------LGKKVEEIM---TKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD- 117 (132)
T ss_pred ------cccccccc-hHHHHHH------------cCCCHHHhc---cCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-
Confidence 00000000 1111111 122566666 367889999999999999999999999999998
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 118 ~~~iGvit~~dl~~ 131 (132)
T cd04636 118 GKLVGIISRGDIIR 131 (132)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=90.69 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=89.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|+ ++++|+++..|++.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~------------------------- 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD------------------------- 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCC-------------------------
Confidence 5688999999999999999999999999997 8999999999987221100000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.++| ...+.++.+++++.++++.|...+.+++||++++
T Consensus 55 ---------------------------------~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~ 98 (113)
T cd04622 55 ---------------------------------PDTTTVGDVM---TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD 98 (113)
T ss_pred ---------------------------------cccCCHHHhc---cCCccEECCCCCHHHHHHHHHHcCCCeeeEECCC
Confidence 0011345555 2578889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 99 ~~~~G~it~~di~~ 112 (113)
T cd04622 99 GRLVGIVSLGDLAR 112 (113)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999865
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-10 Score=89.91 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=89.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.+++...+||+|+ ++++|+++..|++..+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~------------------------ 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKP------------------------ 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCc------------------------
Confidence 5688999999999999999999999999997 49999999999997553210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.+++ ..++..+.+++++.++++.|.+.+...+||+|++
T Consensus 56 ----------------------------------~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 98 (112)
T cd04802 56 ----------------------------------REVPVGEVM---STPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD 98 (112)
T ss_pred ----------------------------------ccCCHHHhc---CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC
Confidence 012344455 2578889999999999999999999999999865
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
+++|+|+..|+++
T Consensus 99 -~~~Gvi~~~di~~ 111 (112)
T cd04802 99 -ELVGIVTTTDIVM 111 (112)
T ss_pred -EEEEEEEhhhhhc
Confidence 9999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-10 Score=89.44 Aligned_cols=109 Identities=16% Similarity=0.255 Sum_probs=89.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++.+.++.+|.+.|.+++...+||+|+ ++++|+++..|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~------------------------- 54 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP------------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC-------------------------
Confidence 4678899999999999999999999999998 6899999999998654311000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++..+++++++.++++.|.+++...+||+|+
T Consensus 55 ----------------------------------~~~~i~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 96 (111)
T cd04589 55 ----------------------------------SSTPVGEIA---TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG- 96 (111)
T ss_pred ----------------------------------CCCCHHHHh---CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-
Confidence 022344555 257889999999999999999999999999985
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 97 ~~~~G~it~~dl~~ 110 (111)
T cd04589 97 GEVVGVLEQTDLLS 110 (111)
T ss_pred CEEEEEEEhHHhhc
Confidence 89999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-10 Score=90.28 Aligned_cols=110 Identities=19% Similarity=0.320 Sum_probs=87.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
.+.++.++.++.+|++.|.+++...++|.+. ++++|++|..|+++.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~------------------------- 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAG------------------------- 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCc-------------------------
Confidence 3678899999999999999888877776654 8999999999998665321000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+...++.++| ...+.++.+++++.++++.|.+++...+||+| +
T Consensus 55 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~ 97 (112)
T cd04625 55 ---------------------------------VLDTTVRAIM---NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G 97 (112)
T ss_pred ---------------------------------hhcCCHHHHh---CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C
Confidence 0012344555 25678899999999999999999999999998 5
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|.+|+++
T Consensus 98 ~~~~Gvvt~~dl~~ 111 (112)
T cd04625 98 GTLLGVISFHDVAK 111 (112)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-10 Score=111.40 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=129.4
Q ss_pred chhHHHHHHh--hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC
Q psy744 73 GGNQIFVKFF--KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150 (405)
Q Consensus 73 ~~~~~~~~~l--~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~ 150 (405)
.+.+.+.+-| +.+++.|+|..-.++++++.+.++.++++.+.+++...+||++++..+++|++..+|++..+...
T Consensus 173 ~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~--- 249 (413)
T PRK11573 173 RNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK--- 249 (413)
T ss_pred HHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc---
Confidence 3455555544 35699999998899999999999999999999999999999988778999999999998543210
Q ss_pred CCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC
Q psy744 151 SSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE 230 (405)
Q Consensus 151 ~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~ 230 (405)
..... ..+.+++ +++..|++
T Consensus 250 ~~~~~--------------------------------------------------------~~l~~~~----r~~~~Vpe 269 (413)
T PRK11573 250 KEFTK--------------------------------------------------------ENMLRAA----DEIYFVPE 269 (413)
T ss_pred CcCCH--------------------------------------------------------HHHHhhc----cCCeEeCC
Confidence 00000 0122222 67889999
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhH-HHhhhccccCccCceEecCCCCHHHH
Q psy744 231 ETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL-KEANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 231 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v-~~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
+.++.++++.|.+++.+-..|+|+.|...|+||..|++..+.++..+..+... ..+.+ .....+.++...++.++
T Consensus 270 ~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~----~~~~~~~v~G~~~l~d~ 345 (413)
T PRK11573 270 GTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP----QNDGSVIIDGTANVREI 345 (413)
T ss_pred CCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEE----ecCCEEEEEeeeEHHHH
Confidence 99999999999999999999999999999999999999998876433221110 00111 12345667777888777
Q ss_pred HHHH
Q psy744 310 MERI 313 (405)
Q Consensus 310 ~~~m 313 (405)
.+.+
T Consensus 346 ~~~l 349 (413)
T PRK11573 346 NKAF 349 (413)
T ss_pred HHHh
Confidence 7765
|
|
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-10 Score=91.66 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=92.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|. ++++|++|..|+...+.......... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~--~~----------------- 60 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDR--HQ----------------- 60 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccch--hh-----------------
Confidence 5678999999999999999999999999997 89999999999987654221110000 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
. ..+...++.++| ..++.++.+++++.++++.|.+.+.+.+||+|+
T Consensus 61 ----------------------~--------~~~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 106 (121)
T cd04633 61 ----------------------E--------RRIRNLPVSDIM---TRPVITIEPDTSVSDVASLMLENNIGGLPVVDD- 106 (121)
T ss_pred ----------------------h--------hhhhccCHHHHc---cCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-
Confidence 0 000122455555 257889999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 107 ~~~~Gvi~~~dl~~ 120 (121)
T cd04633 107 GKLVGIVTRTDILR 120 (121)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=90.95 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=84.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
+++++..+.++.+|++.|.++++..+||+|.. .++++|+++..|+..... .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-----~---------------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-----S---------------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-----c----------------------
Confidence 46788999999999999999999999999972 289999999888762100 0
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC--CCCHHHHHHHHHhcCCCEEEE
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE--ETSIIHALRKFLERRVSALPM 251 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpV 251 (405)
...++++|. ....++.. ++++.++++.|.+++...+||
T Consensus 56 -------------------------------------~~~v~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pV 95 (114)
T cd04602 56 -------------------------------------ETPLSEVMT---PREVLVVAPTGITLEEANEILRESKKGKLPI 95 (114)
T ss_pred -------------------------------------CCCHHHhcC---CCceEEECCCCCCHHHHHHHHHhcCCCceeE
Confidence 012334442 34455545 999999999999999999999
Q ss_pred ECCCCcEEEEEeHHHHHH
Q psy744 252 TDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~ 269 (405)
+|++|+++|+||.+|+++
T Consensus 96 v~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 96 VNDDGELVALVTRSDLKK 113 (114)
T ss_pred ECCCCeEEEEEEHHHhhc
Confidence 998899999999999864
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-10 Score=90.21 Aligned_cols=109 Identities=25% Similarity=0.434 Sum_probs=91.5
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
..++++.++.++.+|+..|.++++..+||.+. .+++|++|..|+.+.+........
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~---------------------- 62 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL---------------------- 62 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc----------------------
Confidence 67899999999999999999999999999998 489999999999977654311000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh-cCCCEEEEEC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE-RRVSALPMTD 253 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd 253 (405)
++.++| ..++.++.++.++.++.+.|.+ ++++.+||++
T Consensus 63 --------------------------------------~v~~v~---~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 63 --------------------------------------PVKEVM---TKPVVTVDPDTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred --------------------------------------cHHHhc---cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 344445 2478899999999999999999 7999999999
Q ss_pred CCC-cEEEEEeHHHHH
Q psy744 254 SEG-HLVDIFAKFDVI 268 (405)
Q Consensus 254 ~~g-~lvGivt~~Dl~ 268 (405)
+++ +++|++|..|++
T Consensus 102 ~~~~~lvGivt~~di~ 117 (117)
T COG0517 102 DDGGKLVGIITLSDIL 117 (117)
T ss_pred CCCCeEEEEEEHHHcC
Confidence 886 999999999973
|
|
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=88.13 Aligned_cols=109 Identities=22% Similarity=0.382 Sum_probs=89.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++++.++.+|++.|.+.+.+.+||+|+ ++++|+++..|+.+...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~--~~----------------------- 54 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR--EA----------------------- 54 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc--cc-----------------------
Confidence 4678999999999999999999999999998 89999999999985442110 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...+.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 55 -----------------------------------~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~ 96 (111)
T cd04612 55 -----------------------------------TVLVGDVM---TRDPVTASPDETLRDALKRMAERDIGRLPVVDDS 96 (111)
T ss_pred -----------------------------------ccCHHHhc---cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC
Confidence 00222333 2678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 97 ~~~~G~it~~di~~ 110 (111)
T cd04612 97 GRLVGIVSRSDLLR 110 (111)
T ss_pred CCEEEEEEHHHhhh
Confidence 99999999999875
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=86.61 Aligned_cols=111 Identities=28% Similarity=0.410 Sum_probs=90.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.++++.|.+++...+||+|++ ++++|+++..|++..+.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~---------------------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLV---------------------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccc----------------------
Confidence 46789999999999999999999999999987 8999999999999766432110000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.+.+++ ..++..+.+++++.++++.|.+.+.+.+||+|++
T Consensus 59 -------------------------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 98 (113)
T cd02205 59 -------------------------------------TVGDVM---TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE 98 (113)
T ss_pred -------------------------------------cHHHHh---cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCC
Confidence 022222 2567788899999999999999999999999998
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 99 ~~~~G~i~~~dl~~ 112 (113)
T cd02205 99 GRLVGIVTRSDILR 112 (113)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-10 Score=88.10 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=85.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|+ ++++|+++..|+.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~------~------------------------ 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH------P------------------------ 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc------c------------------------
Confidence 4677899999999999999999999999984 8999999999987421 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...+.++| ..++.++.+++++.++++.|.+++...+||+|+
T Consensus 50 -----------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 90 (105)
T cd04599 50 -----------------------------------NRLVADAM---TREVVTISPEASLLEAKRLMEEKKIERLPVLRE- 90 (105)
T ss_pred -----------------------------------cCCHHHHc---cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-
Confidence 01223333 256789999999999999999999999999997
Q ss_pred CcEEEEEeHHHHH
Q psy744 256 GHLVDIFAKFDVI 268 (405)
Q Consensus 256 g~lvGivt~~Dl~ 268 (405)
|+++|++|..|++
T Consensus 91 ~~~~G~it~~~l~ 103 (105)
T cd04599 91 RKLVGIITKGTIA 103 (105)
T ss_pred CEEEEEEEHHHhc
Confidence 9999999999986
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=90.18 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=80.7
Q ss_pred EeCCccHHHHHHHHHHcC-----CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 100 FDTQLLVKKAFFALVYNG-----IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 100 v~~~~~v~~A~~~m~~~~-----i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++++.++.+|++.|.+++ +..+||+|++ ++++|++|..|+++. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~------~~----------------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA------DP----------------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC------CC-----------------------
Confidence 567788888988888777 4678888876 788888888877621 00
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.+++ ..++..+.+++++.++++.|.+.+...+||+|+
T Consensus 52 ------------------------------------~~~v~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~ 92 (109)
T cd04606 52 ------------------------------------DTPVSDIM---DTDVISVSADDDQEEVARLFEKYDLLALPVVDE 92 (109)
T ss_pred ------------------------------------cchHHHHh---CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC
Confidence 11233443 256789999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHHH
Q psy744 255 EGHLVDIFAKFDVINL 270 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~~ 270 (405)
+|+++|+++..|+++.
T Consensus 93 ~~~~~Gvit~~dll~~ 108 (109)
T cd04606 93 EGRLVGIITVDDVIDV 108 (109)
T ss_pred CCcEEEEEEhHHhhhh
Confidence 8999999999999864
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=111.54 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=104.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLE-----RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~ 285 (405)
..+++.+| ..+++++.++.|+.+++..+++ .....++|+|.+++++|+++.++++..-. +..+.+
T Consensus 131 e~taG~~M---t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~-------~~~i~~ 200 (451)
T COG2239 131 EDTAGRIM---TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP-------DELLKD 200 (451)
T ss_pred hhhhhccc---eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc-------HhHHHH
Confidence 45778888 5899999999999999999984 34577999999999999999999985422 445666
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
+ |.+.+.++.++++.+++.+.|.+++.-.+||||++|+++|+||..|++..+..+-
T Consensus 201 i------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 201 L------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred H------hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence 5 5577899999999999999999999999999999999999999999999997543
|
|
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=89.94 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=85.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+.... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~-----~~------------------------ 52 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFET-----DL------------------------ 52 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeecc-----cC------------------------
Confidence 56788999999999999999999999999987 8999999988875210 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC-CCCHHHHHHHHHhcCCCEEEEECC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE-ETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.++|. ..+..+.+ ++++.++++.|.+.+.+.+||+|+
T Consensus 53 -----------------------------------~~~v~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 53 -----------------------------------DKPVSEVMT---PENLLTTVEGTSLEEALELLHEHKIEKLPVVDD 94 (110)
T ss_pred -----------------------------------CCCHHHhcc---cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC
Confidence 113334441 34455556 999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+|+.+|+++
T Consensus 95 ~~~~~Gvi~~~dil~ 109 (110)
T cd04601 95 EGKLKGLITVKDIEK 109 (110)
T ss_pred CCCEEEEEEhhhhhc
Confidence 899999999999874
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=86.84 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=85.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.++++..+||+|. ++++|++|..|+.+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~------------------------ 55 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKF------------------------ 55 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccccc------------------------
Confidence 5678999999999999999999999999997 79999999999997654211000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ .+++.++++++++.++++.|.+ . ..+||++++
T Consensus 56 -----------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~ 95 (110)
T cd04609 56 -----------------------------------SLPVREVM---GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEG 95 (110)
T ss_pred -----------------------------------CcCHHHHh---cCCCceeCCCCcHHHHHHHHHh-C-CceeEEecC
Confidence 11233344 2567889999999999999988 3 347899888
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 96 ~~~~Gvvt~~di~~ 109 (110)
T cd04609 96 GKFVGIITRADLLK 109 (110)
T ss_pred CeEEEEEeHHHhhc
Confidence 99999999999874
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=86.49 Aligned_cols=105 Identities=22% Similarity=0.386 Sum_probs=87.0
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
+++++++.+.++.+|++.|.+++...+||+|+ ++++|+++..|++.. ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~------~~----------------------- 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK------DP----------------------- 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc------Cc-----------------------
Confidence 46788999999999999999888888999986 799999999998731 00
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
...+.+++ ...+.++.+++++.++++.|.+++...+||+++
T Consensus 51 ------------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 91 (107)
T cd04610 51 ------------------------------------DETVEEIM---SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE 91 (107)
T ss_pred ------------------------------------cccHHHhC---CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC
Confidence 11233444 256788999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++..|+++
T Consensus 92 ~g~~~Gvi~~~di~~ 106 (107)
T cd04610 92 NNNLVGIITNTDVIR 106 (107)
T ss_pred CCeEEEEEEHHHhhc
Confidence 899999999999874
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=89.40 Aligned_cols=119 Identities=24% Similarity=0.335 Sum_probs=92.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++.+.+||+|.+ ++++|+++..|+.+.......... .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~--~~~~~---------------- 62 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLS--EHELY---------------- 62 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccch--hhhhh----------------
Confidence 46788999999999999999999999999987 899999999999865432110000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.....++.++|. ..+.++.+++++.++++.|.+.+...+||+++
T Consensus 63 --------------------------------~~~~~~v~~~~~---~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~- 106 (121)
T cd04584 63 --------------------------------LLLKMPVKEIMT---KDVITVHPLDTVEEAALLMREHRIGCLPVVED- 106 (121)
T ss_pred --------------------------------hhcCcCHHHHhh---CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-
Confidence 001224555552 57789999999999999999999999999986
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 107 ~~~~Gvv~~~di~~ 120 (121)
T cd04584 107 GRLVGIITETDLLR 120 (121)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999875
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-09 Score=103.40 Aligned_cols=160 Identities=16% Similarity=0.245 Sum_probs=117.4
Q ss_pred CCCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 171 KIHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 171 ~i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
-.+++.++ .+|+++...++.+++. ++..++....... ......++...........++.+..++++.|...+
T Consensus 196 ~~drI~vl-~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (363)
T TIGR01186 196 IGDRIVIM-KAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQ--VFDAERIAQRMNTGPITKTADKGPRSALQLMRDER 272 (363)
T ss_pred hCCEEEEE-eCCEEEeeCCHHHHHhCcccHHHHHHhhccchhc--ccchhhHhhhccccceeecCCCCHHHHHHHHHhcC
Confidence 34788888 5789999999999875 3333332211000 01222222111133345667888999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 325 (405)
...+.|+|+++++.|+++..++........ .+.+. +.....++.++++|.+++..|.+++.. +||+|
T Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 339 (363)
T TIGR01186 273 VDSLYVVDRQNKLVGVVDVESIKQARKKAQ------GLQDV------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD 339 (363)
T ss_pred CceEEEEcCCCCEEEEEeHHHHHHHhhcCC------chhhh------hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC
Confidence 999999999999999999999876654321 23332 345677899999999999999999998 99999
Q ss_pred CCCcEEEEEeHHHHHHHHHhC
Q psy744 326 EDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 326 ~~g~lvGiIt~~DIl~~l~~~ 346 (405)
++|+++|+||..++++++...
T Consensus 340 ~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 340 EDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CCCcEEEEEEHHHHHHHHHhh
Confidence 999999999999999999754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-09 Score=104.41 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=116.4
Q ss_pred CCCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 171 KIHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 171 ~i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
-.+++.+++ +|+++..-+..+++. ++..++.......+ .++.++|.......+...++.+..++++.|...+
T Consensus 231 ~~Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (400)
T PRK10070 231 IGDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQV--FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDED 307 (400)
T ss_pred hCCEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccc--cchhhhhhcCcccccccCCCCCHHHHHHHHHhcC
Confidence 356777884 688888888888764 33333332221111 1444555211111223446778999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 325 (405)
.+.++|+|++++++|+++..++.+...... .+.+. +.....++.++++|.+++..|.++... +||||
T Consensus 308 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 308 REYGYVIERGNKFVGAVSIDSLKTALTQQQ------GLDAA------LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CceEEEEcCCCcEEEEEeHHHHHhhhhcCC------chhhh------hccCCceeCCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 999999999999999999999987654321 23333 335677899999999999999998775 99999
Q ss_pred CCCcEEEEEeHHHHHHHHHhC
Q psy744 326 EDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 326 ~~g~lvGiIt~~DIl~~l~~~ 346 (405)
++|+++|+||..++++.+...
T Consensus 375 ~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 375 EDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CCCcEEEEEEHHHHHHHHHhc
Confidence 999999999999999999743
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-10 Score=101.93 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=112.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
...++++|+.+ ...+++..+.++.+.+..+.+..++++||+.++ ..+.|++..+||++.+..... ...+.+
T Consensus 66 dl~vrDiMIPR-SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~---~F~i~~---- 137 (293)
T COG4535 66 DLRVRDIMIPR-SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE---PFDIKE---- 137 (293)
T ss_pred HhhHhhhcccH-HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc---cccHHH----
Confidence 55899999865 788999999999999999999999999999754 579999999999998765421 122344
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~ 351 (405)
+.+|.+.++++-.+...++-|...+.|...|+|+.|.+-|.||..||+..+++..+.+.
T Consensus 138 ---lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~ 196 (293)
T COG4535 138 ---LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEY 196 (293)
T ss_pred ---hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccccccc
Confidence 44788999999999999999999999999999999999999999999999998776544
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-10 Score=112.88 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=92.0
Q ss_pred EEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 98 VVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 98 v~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
.+++++.++.+|++.|.++++..+||+|+. .++++|++|..|+.... .
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~----~-------------------------- 157 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR----M-------------------------- 157 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc----c--------------------------
Confidence 689999999999999999999999999972 37999999999985110 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..+.+++++|... .+++++.+++++.+|+++|.++++..+||+|++
T Consensus 158 ---------------------------------~~~~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~ 203 (502)
T PRK07107 158 ---------------------------------SLDTKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN 203 (502)
T ss_pred ---------------------------------CCCCCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence 0133577777311 378899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHHHH
Q psy744 256 GHLVDIFAKFDVINLA 271 (405)
Q Consensus 256 g~lvGivt~~Dl~~~~ 271 (405)
|+++|+||.+|+++..
T Consensus 204 g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 204 GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CeEEEEEEhHHHHhcc
Confidence 9999999999998854
|
|
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=110.17 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=103.0
Q ss_pred hHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCC
Q psy744 75 NQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSIT 154 (405)
Q Consensus 75 ~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~ 154 (405)
.....++|+..++.|+| +++++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+.+.+......
T Consensus 325 ~~~~~~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~---- 397 (454)
T TIGR01137 325 VLTVFDVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKAN---- 397 (454)
T ss_pred cccHHHHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCC----
Confidence 43466779999999999 6689999999999999999999999999999987 8999999999998654321000
Q ss_pred HHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCH
Q psy744 155 MEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSI 234 (405)
Q Consensus 155 ~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l 234 (405)
...++.++| ..++.++.+++++
T Consensus 398 -------------------------------------------------------~~~~v~~im---~~~~~~v~~~~~l 419 (454)
T TIGR01137 398 -------------------------------------------------------PDDAVSKVM---SKKFIQIGEGEKL 419 (454)
T ss_pred -------------------------------------------------------cCCCHHHhc---CCCCeEECCcCcH
Confidence 012455555 2667899999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 235 IHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 235 ~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
.++++.|.+++ .+||+++|+++|+||..|+++.+
T Consensus 420 ~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 420 SDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 99999998754 34555579999999999998764
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=86.35 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=83.2
Q ss_pred EEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEE
Q psy744 98 VVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPV 177 (405)
Q Consensus 98 v~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpV 177 (405)
+++.++.++.+|++.|.+++...+||+|. ++++|+++..|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~-------------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY-------------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc--------------------------------
Confidence 67889999999999999999999999996 89999999999873210
Q ss_pred EeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCc
Q psy744 178 IDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGH 257 (405)
Q Consensus 178 vd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~ 257 (405)
.++.++| .....++.++.++.++++.|.+++...+||+| +|+
T Consensus 50 ----------------------------------~~~~~~~---~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~ 91 (104)
T cd04594 50 ----------------------------------GDVVDYI---VRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGK 91 (104)
T ss_pred ----------------------------------cchhhhh---hcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCE
Confidence 0122233 24578899999999999999999999999998 589
Q ss_pred EEEEEeHHHHHH
Q psy744 258 LVDIFAKFDVIN 269 (405)
Q Consensus 258 lvGivt~~Dl~~ 269 (405)
++|++|..|++.
T Consensus 92 ~iGvit~~dl~~ 103 (104)
T cd04594 92 FKGIVTLDSILD 103 (104)
T ss_pred EEEEEEHHHhhc
Confidence 999999999874
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-09 Score=90.07 Aligned_cols=141 Identities=23% Similarity=0.306 Sum_probs=95.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++.++||+|+ ++++|++|..|+++++.........-.... .. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~-------------~~-~ 65 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSP-------------LE-L 65 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCc-------------ce-e
Confidence 5788999999999999999999999999997 799999999999877653221000000000 00 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
. ...+.-++...+....... ....++.++| ..++.++.+++++.++++.|.+.+.+.+||+++
T Consensus 66 --~--~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~- 128 (143)
T cd04634 66 --I--ELPLREFINWEETKRALTD---------AGKMKVRDIM---TKKVITISPDASIEDAAELMVRHKIKRLPVVED- 128 (143)
T ss_pred --e--eccchheeehHHHHHHHHH---------HhcCCHHHHc---CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-
Confidence 0 0000011111111111110 0123456666 367899999999999999999999999999987
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|++.
T Consensus 129 ~~~~Gvvt~~dl~~ 142 (143)
T cd04634 129 GRLVGIVTRGDIIE 142 (143)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=109.58 Aligned_cols=119 Identities=23% Similarity=0.339 Sum_probs=97.7
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCC--CeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVH--QQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~--~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
+..+.| ..++++++++.++.+|++.|.++++..+||+|++. ++++|++|..|+.... .+
T Consensus 81 ~~~~~~--~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-----~~------------ 141 (450)
T TIGR01302 81 RAENGI--ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-----DK------------ 141 (450)
T ss_pred cccCce--ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-----cC------------
Confidence 344555 55889999999999999999999999999999853 5899999999986210 00
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
..++.++|. ..+++++++++++.++++.|.+
T Consensus 142 -----------------------------------------------~~~V~dvm~--~~~~~~V~~~~sl~eal~~m~~ 172 (450)
T TIGR01302 142 -----------------------------------------------GKPVSEVMT--REEVITVPEGIDLEEALKVLHE 172 (450)
T ss_pred -----------------------------------------------CCCHHHhhC--CCCCEEECCCCcHHHHHHHHHH
Confidence 124455552 1378999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
++.+.+||+|++|+++|+||.+|+++...
T Consensus 173 ~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 173 HRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred cCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 99999999999999999999999998753
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=110.34 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=95.7
Q ss_pred CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcC
Q psy744 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYK 171 (405)
Q Consensus 94 s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~ 171 (405)
..+++++.++.++.+|+++|.++++..+||+|+. .++++|++|..|+.... .
T Consensus 107 i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-----~--------------------- 160 (505)
T PLN02274 107 VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-----D--------------------- 160 (505)
T ss_pred cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----c---------------------
Confidence 5678999999999999999999999999999973 27899999999986210 0
Q ss_pred CCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEE
Q psy744 172 IHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251 (405)
Q Consensus 172 i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 251 (405)
...++.++|... .+++++.+++++.++++.|.+++...+||
T Consensus 161 --------------------------------------~~~~V~eIMt~~-~~lvtv~~~~sL~eAl~~m~~~~~~~LPV 201 (505)
T PLN02274 161 --------------------------------------RETKLSEVMTSD-DDLVTAPAGIDLEEAEAVLKDSKKGKLPL 201 (505)
T ss_pred --------------------------------------cCCcHHHHhccC-CCcEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 023566666310 23789999999999999999999999999
Q ss_pred ECCCCcEEEEEeHHHHHHHHHh
Q psy744 252 TDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+|++++++|+||.+|+++....
T Consensus 202 VD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 202 VNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred EcCCCeEEEEEEHHHHHHHhhC
Confidence 9999999999999999988754
|
|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=108.17 Aligned_cols=127 Identities=17% Similarity=0.265 Sum_probs=107.1
Q ss_pred HHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHh
Q psy744 80 KFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELE 159 (405)
Q Consensus 80 ~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~ 159 (405)
+|+ .+++.+++ ..+.+++++++++.+|.+.|.++|+.++.+++.+ +...||+|.+|+...+.....
T Consensus 145 e~~-~trv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~---------- 210 (610)
T COG2905 145 EFI-LTRVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGR---------- 210 (610)
T ss_pred hHH-HHHHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCC----------
Confidence 344 34555666 6788999999999999999999999999999887 899999999999966543210
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALR 239 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~ 239 (405)
-...+++++| +.+++++..++.+-+|.-
T Consensus 211 -------------------------------------------------~~~~~V~evm---T~p~~svd~~~~~feAml 238 (610)
T COG2905 211 -------------------------------------------------SKTQKVSEVM---TSPVISVDRGDFLFEAML 238 (610)
T ss_pred -------------------------------------------------Ccccchhhhh---ccCceeecCcchHHHHHH
Confidence 0144788888 589999999999999999
Q ss_pred HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 240 KFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 240 ~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
.|.+++++++||++ +|+++|++|..||++....
T Consensus 239 ~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 239 MMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred HHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 99999999999997 6999999999999988753
|
|
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=85.16 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=84.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
.+..++++.++.++.+.|.+++...+||+|+. .++++|+++..|+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 46788999999999999999999999999983 2889999999988744321
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
+| ..++.++.+++++.++++.|.+++.+.+||++
T Consensus 56 -------------------------------------------~m---~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 56 -------------------------------------------YI---DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD 89 (105)
T ss_pred -------------------------------------------hc---cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12 25677899999999999999999999999995
Q ss_pred CCCcEEEEEeHHHHHH
Q psy744 254 SEGHLVDIFAKFDVIN 269 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++.+|+++
T Consensus 90 -~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 90 -EGRLVGIITRKDLLK 104 (105)
T ss_pred -CCeEEEEEEhhhhhc
Confidence 789999999999875
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=103.27 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=94.6
Q ss_pred hcccccccCCCCC-eEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 84 FHKCYDLIPTSAK-LVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 84 ~~~~~d~~p~s~~-vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
..++.|+| ..+ +.++.++.++.+|++.|.+.++..+||+|++ ++++|++|..|+.+.+... .
T Consensus 154 ~~~v~~im--~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~--~------------ 216 (268)
T TIGR00393 154 LVKVKDLM--QTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGG--G------------ 216 (268)
T ss_pred hhhHHHHh--CCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcC--C------------
Confidence 35788888 445 8899999999999999999999999999987 8999999999998643210 0
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
....+++++| .+++.++.+++++.+|++.|.
T Consensus 217 ----------------------------------------------~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~ 247 (268)
T TIGR00393 217 ----------------------------------------------SLKSEVRDFM---TLGPKTFKLDALLLEALEFLE 247 (268)
T ss_pred ----------------------------------------------cccCcHHHhC---CCCCeEECCCCcHHHHHHHHH
Confidence 0023566666 367889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEe
Q psy744 243 ERRVSALPMTDSEGHLVDIFA 263 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt 263 (405)
+.+...+||+|++|+++|+|+
T Consensus 248 ~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 248 RRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HcCCcEEEEECCCCeEEEEEC
Confidence 999999999998899999985
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=100.60 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=83.7
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
+-.+.|..|+||+|...+++|++|.+|++..- -+.++..+| .+++.++.+.+++..+.+.|.-.+
T Consensus 215 l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~------------~~t~ieKVM---tknp~tv~~~tsVAsvaq~MiwE~ 279 (432)
T COG4109 215 LVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK------------PSTTIEKVM---TKNPITVRAKTSVASVAQMMIWEG 279 (432)
T ss_pred HHHHcCCCccceecccceEEEEEEehhhhcCC------------CCccHHHHh---ccCCeeecccchHHHHHHHHHhcc
Confidence 66789999999999999999999999998411 255788888 588999999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+.-+||+|++.+++|+||++|+++.+..
T Consensus 280 iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 280 IEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred ceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999998764
|
|
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=77.05 Aligned_cols=52 Identities=31% Similarity=0.405 Sum_probs=49.9
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||.+||++++.
T Consensus 5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 6789999999999999999999999999999999999999999999999985
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-09 Score=84.68 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=87.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcC-CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNG-IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~-i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++.++.+++++.+|++.|...+ +..+||+|+ ++++|+++..|+++.+...+. ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~---------------- 57 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RAL---------------- 57 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHH----------------
Confidence 4567899999999999999887 899999998 899999999999865442100 000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCC---EEEE
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVS---ALPM 251 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpV 251 (405)
+...++.++| ..++.++.+++++.++++.|.+.+.. ..||
T Consensus 58 ----------------------------------~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (119)
T cd04598 58 ----------------------------------YGKKPVSEVM---DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFI 100 (119)
T ss_pred ----------------------------------HcCCcHHHhc---CCCcEEecCCCCHHHHHHHHHcCCcccccccEE
Confidence 0022455666 36788999999999999999988753 4478
Q ss_pred ECCCCcEEEEEeHHHHHH
Q psy744 252 TDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~ 269 (405)
++++|+++|+|+..|+++
T Consensus 101 v~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 101 VTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred EeeCCeEEEEEEHHHHhc
Confidence 888899999999999874
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.8e-09 Score=105.52 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=96.2
Q ss_pred cccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 87 CYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 87 ~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
..+.+ ..++++++++.++.+|+++|.++++..+||+|+. .++++|++|..|+... . .
T Consensus 98 ~e~g~--i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-~----~-------------- 156 (495)
T PTZ00314 98 FENGF--IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-K----D-------------- 156 (495)
T ss_pred ccccc--ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-c----c--------------
Confidence 33455 4577899999999999999999999999999974 2789999999998611 0 0
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
...+++++|.. ..+++++.++.++.+++++|.++
T Consensus 157 ---------------------------------------------~~~~V~diMt~-~~~lvtv~~~~sl~eAl~lm~e~ 190 (495)
T PTZ00314 157 ---------------------------------------------KSTPVSEVMTP-REKLVVGNTPISLEEANEVLRES 190 (495)
T ss_pred ---------------------------------------------CCCCHHHhhCC-cCCceEeCCCCCHHHHHHHHHHc
Confidence 02256666620 02789999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
+...+||+|++++++|+||.+|+++..
T Consensus 191 ~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 191 RKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 999999999999999999999999764
|
|
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=101.21 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=130.2
Q ss_pred hccchhHHHHHHh--hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHh
Q psy744 70 EKDGGNQIFVKFF--KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMY 147 (405)
Q Consensus 70 ~~~~~~~~~~~~l--~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~ 147 (405)
+.+.+.+.+++-| ..+++.++|..-.+++.++.+.++.++++.+.+++....||+++....++|++..+|++......
T Consensus 189 ~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 189 LEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 4555677776655 46799999999899999999999999999999999999999996668999999999999665432
Q ss_pred hCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeE
Q psy744 148 YTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227 (405)
Q Consensus 148 ~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 227 (405)
.. . ...... .+++..
T Consensus 269 ~~--~-----------------------------------------------------------~~~~~~----~~~~~~ 283 (429)
T COG1253 269 QS--D-----------------------------------------------------------LDLRVL----VRPPLF 283 (429)
T ss_pred cc--c-----------------------------------------------------------cchhhc----ccCCeE
Confidence 00 0 000000 147899
Q ss_pred EcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhh-HHHhhhccccCccCceEecCCCCH
Q psy744 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT-LKEANEHKTDWFEGVEKCLLDETL 306 (405)
Q Consensus 228 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~-v~~~~~~~~~~~~~~~~v~~~~~l 306 (405)
++++.++.++++.|++.+.+-..|+|+.|.+.|+||..|++..+.....+..+.. ..+.... .... +.++...++
T Consensus 284 Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~---~~~~-~~v~G~~~l 359 (429)
T COG1253 284 VPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQR---DDDG-WLVDGRVPL 359 (429)
T ss_pred ecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEe---cCCc-EEEeccccH
Confidence 9999999999999999999999999999999999999999999987644322210 0111110 1123 556677777
Q ss_pred HHHHHHH
Q psy744 307 FTVMERI 313 (405)
Q Consensus 307 ~~a~~~m 313 (405)
.+..+.+
T Consensus 360 ~e~~~~l 366 (429)
T COG1253 360 EELEELL 366 (429)
T ss_pred HHHHHHh
Confidence 6666654
|
|
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=85.37 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=80.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+++++............+... .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~----~---------- 66 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQ----T---------- 66 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcc----c----------
Confidence 57889999999999999999999999999987 89999999999998765321111100000000 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+.. .+ .++.. ...+.+.| ..+++++.+++++.+|++.|.+++++.+||+|++
T Consensus 67 ----~~~----~v--~~i~~---------------~~~~~~~~---~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 67 ----NTC----LV--SSVCT---------------KGISYGGQ---ECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ----ccc----cH--HHHhh---------------hhhhhccc---CCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 000 00 00000 00112222 2568899999999999999999999999999854
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=80.82 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=83.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.++++..+||++++ ++++|+++..+++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------~~----------------------- 51 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------EE----------------------- 51 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------cc-----------------------
Confidence 46788899999999999999888899999887 8899999988887310 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..+.+++ ..++.++.+++++.++++.|.+.+...+||+|+
T Consensus 52 ------------------------------------~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~- 91 (106)
T cd04638 52 ------------------------------------EQLALLM---TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD- 91 (106)
T ss_pred ------------------------------------chHHHHh---cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-
Confidence 0122222 256788899999999999999999999999984
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 92 ~~~~G~it~~d~~~ 105 (106)
T cd04638 92 GKLVGIVTVADIVR 105 (106)
T ss_pred CEEEEEEEHHHhhc
Confidence 79999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=71.47 Aligned_cols=55 Identities=27% Similarity=0.404 Sum_probs=50.4
Q ss_pred ccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 215 RDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 215 ~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+++| .++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++++.
T Consensus 2 ~~~m---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIM---TPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHS---BSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECC---cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 4566 369999999999999999999999999999999999999999999998764
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.4e-08 Score=91.65 Aligned_cols=130 Identities=16% Similarity=0.221 Sum_probs=109.9
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
...++.|+|-.-..+..++.+.+.++..+.+...-...+|+|.++..+++||+..+|+++++.+...
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~------------- 264 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE------------- 264 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------------
Confidence 3559999998889999999999999999999999999999998887889999999999988765311
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
.+..|+.+. ..++..+++.+++.+-+..|.
T Consensus 265 -------------------------~~k~d~~~~-------------------------a~epyFVPe~Tpl~~QL~~F~ 294 (423)
T COG4536 265 -------------------------FTKEDILRA-------------------------ADEPYFVPEGTPLSDQLVAFQ 294 (423)
T ss_pred -------------------------ccHhHHHHH-------------------------hcCCeecCCCCcHHHHHHHHH
Confidence 011122221 157889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~ 275 (405)
+++-+-..|||+-|.+.|+||.+|++..+....
T Consensus 295 ~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 295 RNKKHIALVVDEYGDIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred HhcceEEEEEeccCcEEeeeeHHHHHHHHhccc
Confidence 999888899999999999999999999887664
|
|
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=9e-09 Score=97.98 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=98.1
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
.++.+..+-..+++.+.|+.++.++++....+++..+||.+. .+|++|+||.+|+-.. ++ -...+.++
T Consensus 106 ~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~----~~~~~~~v--- 176 (503)
T KOG2550|consen 106 RVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--ED----NSLLVSDV--- 176 (503)
T ss_pred HHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hc----ccchhhhh---
Confidence 344444333478899999999999999999999999999964 3689999999998765 21 13345554
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
|+...++...+.+|.++-+++.+++...|||||++|+++.+|+++||.+.-
T Consensus 177 ---mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 177 ---MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred ---cccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 556668889999999999999999999999999999999999999998864
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.5e-08 Score=90.64 Aligned_cols=147 Identities=19% Similarity=0.266 Sum_probs=113.5
Q ss_pred CEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCC
Q psy744 173 HRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVS 247 (405)
Q Consensus 173 ~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~ 247 (405)
+||.++ ++|+++++-|+.+|+. |+..|+.+......+ +..++|.. ......-.+...-..++..+......
T Consensus 233 ~rIaim-kdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~Vl--tA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~ 308 (386)
T COG4175 233 DRIAIM-KDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVL--TAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGRE 308 (386)
T ss_pred ceEEEe-cCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhhee--eHHHhhcc-cccccccccccccchhhhhhhhccch
Confidence 578888 7999999999999995 777777765544433 56777742 12222223333445678888888877
Q ss_pred EEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q psy744 248 ALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED 327 (405)
Q Consensus 248 ~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 327 (405)
.+.+++.+++.+|+++..++..+. +...+.++.+++++.+.+..+.+... .++|+|++
T Consensus 309 ~~~~~~~~~~~~g~v~~~~~~~~~---------------------~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~ 366 (386)
T COG4175 309 YGYAVDRGNKFVGVVSIDSLVKAA---------------------LIDDVLTVDADTPLSEILARIRQAPC-PVAVVDED 366 (386)
T ss_pred hhHHHhccCceeeEEeccchhccc---------------------ccccccccCccchHHHHHHHHhcCCC-ceeEEcCC
Confidence 788888888899999999887651 23567789999999999999988887 78999999
Q ss_pred CcEEEEEeHHHHHHHHHh
Q psy744 328 DHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 328 g~lvGiIt~~DIl~~l~~ 345 (405)
|+++|+|+...++.++..
T Consensus 367 ~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 367 GRYVGIISRGELLEALAR 384 (386)
T ss_pred CcEEEEecHHHHHHHHhc
Confidence 999999999999999974
|
|
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=90.81 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=92.3
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcC-----CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNG-----IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~-----i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
++.-+| ..+.+++..+.|+.+|+..+++.+ +..+-|+|.+ +++.|+++.++++
T Consensus 133 taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll------------------- 190 (451)
T COG2239 133 TAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLL------------------- 190 (451)
T ss_pred hhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHh-------------------
Confidence 555577 678999999999999999999653 3455555555 5566666655555
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
. .--+..++++|. +.++++.+++..+++.+.
T Consensus 191 ----------------------------------~------------a~~~~~i~~im~---~~~~~V~~~~dqeevA~~ 221 (451)
T COG2239 191 ----------------------------------T------------AEPDELLKDLME---DDVVSVLADDDQEEVARL 221 (451)
T ss_pred ----------------------------------c------------CCcHhHHHHHhc---ccceeecccCCHHHHHHH
Confidence 1 001336777773 668999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+.+++.-.+||||++++++|++|..|++..+.+.
T Consensus 222 ~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 222 FEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred HHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=76.49 Aligned_cols=161 Identities=10% Similarity=0.123 Sum_probs=123.3
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
...+.|+|-+-++.++++.+.++.+.+..+.+......||+.+++..+.||+-..|++.++.....
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~-------------- 131 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE-------------- 131 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc--------------
Confidence 557889998888999999999999999999999999999998887889999999999876542100
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
...++++. ++.+.|++...+...++.++.
T Consensus 132 -----------------------------------------------~F~i~~lL----RPav~VPESKrvd~lLkeFR~ 160 (293)
T COG4535 132 -----------------------------------------------PFDIKELL----RPAVVVPESKRVDRLLKEFRS 160 (293)
T ss_pred -----------------------------------------------cccHHHhc----ccceecccchhHHHHHHHHHh
Confidence 00122222 788899999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhh-HHHhhhccccCccCceEecCCCCHHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT-LKEANEHKTDWFEGVEKCLLDETLFTVMERI 313 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~-v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m 313 (405)
++.+-..|+|+-|.+-|.||..|++..+.....+..+.. -.++.. ..+.-+.+..-+++.+--+.|
T Consensus 161 ~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~----ls~~~~~VrALT~IedFNe~F 227 (293)
T COG4535 161 QRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQ----LSRHTWRVRALTEIEDFNEAF 227 (293)
T ss_pred hcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHh----hcCCceEEEecccHHHHHHHh
Confidence 999999999999999999999999999876543322211 111211 335566777777777666654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.4e-06 Score=82.34 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=81.1
Q ss_pred EeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEe
Q psy744 100 FDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVID 179 (405)
Q Consensus 100 v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd 179 (405)
..++.+...|+..|..++..++.|+|.+ ++++|+++..++.......
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-------------------------------- 336 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-------------------------------- 336 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC--------------------------------
Confidence 3455677888888888888888888877 7888888877776433210
Q ss_pred CCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEE
Q psy744 180 EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLV 259 (405)
Q Consensus 180 ~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lv 259 (405)
..+.+.+ .....++.+++++.+++..+.+.... +||+|++|+++
T Consensus 337 --------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 380 (400)
T PRK10070 337 --------------------------------QGLDAAL---IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYV 380 (400)
T ss_pred --------------------------------Cchhhhh---ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEE
Confidence 0122222 14567899999999999999987766 99999999999
Q ss_pred EEEeHHHHHHHHHhcc
Q psy744 260 DIFAKFDVINLAAEKT 275 (405)
Q Consensus 260 Givt~~Dl~~~~~~~~ 275 (405)
|+|+..++++.+....
T Consensus 381 g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 381 GIISKGMLLRALDREG 396 (400)
T ss_pred EEEEHHHHHHHHHhcC
Confidence 9999999999987653
|
|
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-07 Score=97.10 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=119.8
Q ss_pred HHHhcCCCEEEEEeC------------CCCEEEEEeHHHHHHHHHHhhCCCCCcccccccccccccccc-CCeeEEcCCC
Q psy744 166 NLIDYKIHRLPVIDE------------MGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY-ENVETVAEET 232 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~------------~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~ 232 (405)
.+++.++..+.|++. ...+.++.|+.|.......... ..+++++| . ++++++++++
T Consensus 196 ~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~~--------~~~V~~iM---~~~~~~~~~~~~ 264 (546)
T PRK14869 196 AAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLINQ--------SIPVSYIM---TTEDLVTFSKDD 264 (546)
T ss_pred HHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhhc--------CCCHHHhc---cCCCcEEECCCC
Confidence 578889999988862 3468999999998876654322 45789998 4 6899999999
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc----ccchhh--------hHHHhhh---ccccCccCc
Q psy744 233 SIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT----YTNLDV--------TLKEANE---HKTDWFEGV 297 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~----~~~l~~--------~v~~~~~---~~~~~~~~~ 297 (405)
++.++.+.|.+++++.+||+|++|+++|++|..|+++...... ...... .+.++.. ..+.+...+
T Consensus 265 ~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~p 344 (546)
T PRK14869 265 YLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNP 344 (546)
T ss_pred cHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCCC
Confidence 9999999999999999999999999999999999998654310 000000 0001111 123344454
Q ss_pred eEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 298 EKC---LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 298 ~~v---~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+.+ +...+..-+.+.|.+.++...|++. ...+.||+|-++.+++
T Consensus 345 i~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 345 IFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS 391 (546)
T ss_pred cEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence 444 4466777888999999998888876 5578888888877763
|
|
| >KOG0474|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-07 Score=89.96 Aligned_cols=135 Identities=14% Similarity=0.229 Sum_probs=107.4
Q ss_pred ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-----CcEEEEEeHHHHHHHHHhcccc----
Q psy744 207 PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-----GHLVDIFAKFDVINLAAEKTYT---- 277 (405)
Q Consensus 207 ~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGivt~~Dl~~~~~~~~~~---- 277 (405)
+.+.+.+++++| ..+++++..-+.+..+.+.+....++++||+|+. +++.|+|-++.++..+....+.
T Consensus 577 ~~mr~L~a~ev~---~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~ 653 (762)
T KOG0474|consen 577 PYMRNLTAGEVM---SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESR 653 (762)
T ss_pred hHhhhhhHhhhc---cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence 334455788888 4789999999999999999999999999999952 5789999999998877654221
Q ss_pred -chhh----------------hHHH----------hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Q psy744 278 -NLDV----------------TLKE----------ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHV 330 (405)
Q Consensus 278 -~l~~----------------~v~~----------~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 330 (405)
..+. ++++ .++....|...++++.+++++..++.+|.+-+.+++.||+..+++
T Consensus 654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~ 733 (762)
T KOG0474|consen 654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRV 733 (762)
T ss_pred cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCce
Confidence 0011 1111 123345677889999999999999999999999999999988999
Q ss_pred EEEEeHHHHHHHHH
Q psy744 331 LGVLSLSDILVYLV 344 (405)
Q Consensus 331 vGiIt~~DIl~~l~ 344 (405)
+|++|++|+.++=.
T Consensus 734 ~gilTR~D~~~~~~ 747 (762)
T KOG0474|consen 734 VGILTRKDLARYRI 747 (762)
T ss_pred eEEEehhhhhhHHH
Confidence 99999999996653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=79.09 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=79.6
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
.|...+...+.|+|+++++.|.++.+++..+... ...+.+.+ .....++.+++++.+++..|.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 332 (363)
T TIGR01186 267 LMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK-----------AQGLQDVL---IDDIYTVDAGTLLRETVRKVLKAG 332 (363)
T ss_pred HHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc-----------CCchhhhh---ccCCceECCCCcHHHHHHHHHhCC
Confidence 6778889999999999999999999998876542 11344444 256788999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.. +||+|++|+++|+|+..+++..+...
T Consensus 333 ~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 333 IK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 88 99999999999999999999988654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >KOG0474|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.9e-06 Score=82.18 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=109.8
Q ss_pred HhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCC----CeeeeEEeHHHHHHHHHHhhCC-CCCCH
Q psy744 81 FFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVH----QQYVGMLTITDFIKILQMYYTS-SSITM 155 (405)
Q Consensus 81 ~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~----~~~~GilT~~Dil~~l~~~~~~-~~~~~ 155 (405)
+|++.++.|+| +++|+++...+.+...++.|...+..+.||+|+.. +++.|++-.+.++..+.+.... ...+.
T Consensus 578 ~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 578 YMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred HhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 56788999999 78999999999999999999999999999998743 4788999999998877653211 10000
Q ss_pred HHHh---hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCC
Q psy744 156 EELE---EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEET 232 (405)
Q Consensus 156 ~~l~---~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 232 (405)
.++. ..+... +.+ +-|=+++ + -+|..++- +...+..+| .+.++++.+++
T Consensus 656 ~~~~~~~~~~~~d-~a~----r~~~i~d----v-~lt~~e~~---------------~yvDl~p~~---n~sPytV~~~m 707 (762)
T KOG0474|consen 656 FDLPVRRKFTFRD-FAK----REPSIED----V-HLTSEEME---------------MYVDLHPFM---NPSPYTVPETM 707 (762)
T ss_pred cCcchhhcCCHHH-hhh----cCCchhh----h-hcchHhHh---------------hcccccccc---CCCCcccCccc
Confidence 0000 000000 000 0000000 0 00111111 111344444 37789999999
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 233 SIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
++..++.++++-+.+++.||++.++++|++|++|+...-
T Consensus 708 Sl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 708 SLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred chHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 999999999999999999999989999999999998544
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-05 Score=76.21 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=98.7
Q ss_pred cCCCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 170 YKIHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 170 ~~i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
.-.+++.++ .+|+++...+..+++. ++..+......... .+..++| ++...+...... .+++. .
T Consensus 230 ~l~DrI~vl-~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~--l~a~~~m----~~~~~~~~~~~~-~~~~~---~ 298 (382)
T TIGR03415 230 KIGNRIAIM-EGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNV--LTARSLM----RPLTDLEHVDGG-WCVSD---R 298 (382)
T ss_pred HhCCEEEEE-ECCEEEEecCHHHHhhCcchHHHHHHhcccCcccc--eeHHHHh----cccccccccCcc-hhhhh---c
Confidence 345788888 5789999999988863 34444443332222 2566677 232233222222 44444 7
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEE
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVV 324 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 324 (405)
+.+.++|+|. |+++..+...+..... ...+.+ +.....++++++++.+++..+.+++. .++|+
T Consensus 299 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 361 (382)
T TIGR03415 299 RDTWLFTIDK-----QVRRRDAKLPVQAWAA----EQEVES-------LEAAPTVINPDTLMRDVLAARHRTGG-AILLV 361 (382)
T ss_pred ccceeEeecc-----ceecccchHhHhhccc----ccchhh-------hcccCcccCCCCcHHHHHHHHhcCCC-CeEEe
Confidence 8888999985 8888888665444211 111222 22467789999999999999998876 68899
Q ss_pred cCCCcEEEEEeHHHHHHHHHh
Q psy744 325 DEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 325 d~~g~lvGiIt~~DIl~~l~~ 345 (405)
|+ |+++|+|+..+++.++..
T Consensus 362 ~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 362 EN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred eC-CeEEEEEeHHHHHHHHhc
Confidence 85 999999999999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.7e-06 Score=65.85 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=45.3
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus 64 m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 64 INRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred cCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5578889999999999999999999999999998899999999999864
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-05 Score=52.37 Aligned_cols=47 Identities=32% Similarity=0.449 Sum_probs=43.1
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46789999999999999999999999999889999999999998765
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=63.88 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=49.6
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~ 269 (405)
.++.++|. +++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+
T Consensus 58 ~~v~dim~---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVIN---RKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcC---CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 46888884 67889999999999999999999999999999899999999999864
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=74.86 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=86.8
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCC
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKI 172 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i 172 (405)
.+.+++.++.++-++++.-..+++..+|+.+.. ..+++|++|.+|+--. ..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~-------------------------- 168 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-ED-------------------------- 168 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hc--------------------------
Confidence 456888899999999999999999999998642 2567777777776511 00
Q ss_pred CEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE
Q psy744 173 HRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 173 ~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 252 (405)
....+.++|. .+.++.+.+.++.++-+++.+.+...+|||
T Consensus 169 -------------------------------------~~~~~~~vmt---~~~~~~~~gi~l~~~neiL~~~kkGkl~iv 208 (503)
T KOG2550|consen 169 -------------------------------------NSLLVSDVMT---KNPVTGAQGITLKEANEILKKIKKGKLPVV 208 (503)
T ss_pred -------------------------------------ccchhhhhcc---cccccccccccHHHHHHHHHhhhcCCccee
Confidence 0235666773 555889999999999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHHHH
Q psy744 253 DSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~~~ 271 (405)
|++|.++.++++.||.+..
T Consensus 209 ~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 209 DDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred ccCCceeeeeehhhhhhhc
Confidence 9999999999999997653
|
|
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.3e-05 Score=48.99 Aligned_cols=47 Identities=36% Similarity=0.540 Sum_probs=42.5
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 225 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46788999999999999999999999999889999999999997653
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >KOG0475|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00057 Score=69.27 Aligned_cols=118 Identities=10% Similarity=0.100 Sum_probs=88.3
Q ss_pred eeEEcCC-CCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHHhccc-cch--------hhh-------HHH
Q psy744 225 VETVAEE-TSIIHALRKFLERRVSALPMTD--SEGHLVDIFAKFDVINLAAEKTY-TNL--------DVT-------LKE 285 (405)
Q Consensus 225 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Dl~~~~~~~~~-~~l--------~~~-------v~~ 285 (405)
..++..+ .++.+....|.+..++.+||+- +..+++|++.++|+.-.+..... ... ..+ ...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 4555555 8999999999999999999883 34789999999999877653210 000 000 011
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
-++.+..|...+.++...++.+.+++++.+-+++.+.|.. +|++.|+||.+|+++..
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 1233455667788999999999999999999998887765 89999999999999864
|
|
| >KOG0475|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0074 Score=61.46 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=89.9
Q ss_pred CeEEEeCC-ccHHHHHHHHHHcCCceeeeE-eCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQ-LLVKKAFFALVYNGIRAAPLW-DSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~-~~v~~A~~~m~~~~i~~~PV~-d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
.++++..+ .++.+...+|.+......||+ ++++++++|+++.+|+.-.+............ +
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~--------~-------- 620 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVT--------T-------- 620 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcccccccee--------c--------
Confidence 45666655 899999999999999988886 55668899999999998666532111110000 0
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
++ +...+.+. .....--...+++++ .-.+.++...++.+-+++++.+-+...+.|.
T Consensus 621 ---------~~-~f~~~~~~----------~~~~~~~~~~lk~il---~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~- 676 (696)
T KOG0475|consen 621 ---------SI-YFNDPSPS----------AVAGIPSRLDLKDIL---DMTPFTVTDLTPMETVVDLFRKLGLRQILVT- 676 (696)
T ss_pred ---------cc-ccCCCCcc----------ccCCCCCCcCceeec---cCCcccccccCcHHHHHHHHHhhCceEEEEc-
Confidence 00 00000000 000000012445555 2567889999999999999999999888775
Q ss_pred CCCcEEEEEeHHHHHHHH
Q psy744 254 SEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~~~ 271 (405)
++|++.|+||.+|+++..
T Consensus 677 ~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 677 KNGILLGIITKKDCLRHT 694 (696)
T ss_pred cCCeeEeeeehHHHHHhh
Confidence 579999999999998764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.016 Score=53.25 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCC--cccccccccccccccc-CCeeEEcCCCCHHHHHHHHHh
Q psy744 172 IHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPK--PSFLNKTLRDLKIGTY-ENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 172 i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~--~~~~~~~v~~i~~~~~-~~~~~v~~~~~l~~a~~~m~~ 243 (405)
..++.|++ .|+++++-++.+|++ |+..+++.-.. ..+....+.+.+.... -.--.+.....-.+++..+..
T Consensus 203 adri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~ 281 (309)
T COG1125 203 ADRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLA 281 (309)
T ss_pred hceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHh
Confidence 46889995 899999999999986 66666553211 1111223333332100 011123334445568888888
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~ 269 (405)
.+...+||+|++|+++|.+|..+++.
T Consensus 282 ~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 282 RGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred cCCceeEEECCCCcEeeEEEHHHHhh
Confidence 99999999999999999999999875
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.068 Score=49.25 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch------------hhhHHHhhhcc
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL------------DVTLKEANEHK 290 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l------------~~~v~~~~~~~ 290 (405)
+.++.|..| +.||+++- +.+.|.+ +|+++-+=+..+++...++.....+ ...+.+.+...
T Consensus 187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 345555444 46787663 4678887 6999999999999877665432111 11222221110
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
.. ..--.........+++..+...+...+||+|++|+++|.||..+|+..
T Consensus 259 ~~--~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP--ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc--ccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 00 001122344555668888888999999999999999999999999875
|
|
| >KOG0476|consensus | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.24 Score=51.92 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=50.8
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCC-eeeeEEeHHHHHHHHHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQ-QYVGMLTITDFIKILQM 146 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~-~~~GilT~~Dil~~l~~ 146 (405)
..+.|+| -++|..+..++|..+.-+++..+.++++|++|+... -++|.+..+.+...+..
T Consensus 588 v~VE~iM--V~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 588 VKVEHIM--VTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred EEeeeec--cccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 3566777 678999999999999999999888999999988643 48899999999987764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.071 Score=52.81 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=61.9
Q ss_pred HHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCC
Q psy744 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRV 246 (405)
Q Consensus 167 l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 246 (405)
+.+++...+.|+|. |+++..+........ . ...+.+ . ..+..++++++++.+++..+.+.++
T Consensus 295 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~--------~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (382)
T TIGR03415 295 VSDRRDTWLFTIDK-----QVRRRDAKLPVQAWA-A--------EQEVES-L---EAAPTVINPDTLMRDVLAARHRTGG 356 (382)
T ss_pred hhhcccceeEeecc-----ceecccchHhHhhcc-c--------ccchhh-h---cccCcccCCCCcHHHHHHHHhcCCC
Confidence 44567788888875 777766654322110 0 113444 2 2567899999999999999888775
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 247 SALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 247 ~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
. ++|+|+ |+++|+|+..+++.++.
T Consensus 357 ~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 357 A-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred C-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 5 889986 99999999999998765
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.1 Score=49.54 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=63.4
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
.+.+.+...+.+++..++.+|+++..+..+. .+ ...+.++..++++.+.+..+.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--------------------~~---~~~~~~v~~d~~~~~~~~~~~~~~ 357 (386)
T COG4175 301 LLRDEGREYGYAVDRGNKFVGVVSIDSLVKA--------------------AL---IDDVLTVDADTPLSEILARIRQAP 357 (386)
T ss_pred hhhhccchhhHHHhccCceeeEEeccchhcc--------------------cc---cccccccCccchHHHHHHHHhcCC
Confidence 4555555555566666778888886555532 11 267788999999999999888776
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
. .++|+|++++++|+++...++.++..
T Consensus 358 ~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 358 C-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred C-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 4 58999999999999999999988754
|
|
| >KOG0476|consensus | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.8 Score=45.61 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=49.5
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHHh
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Dl~~~~~~ 273 (405)
.++++|+ +++.++..+.|..|..+.+.....+.+|+||+ +.-++|.|.++.+..++..
T Consensus 589 ~VE~iMV---~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 589 KVEHIMV---TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred Eeeeecc---ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 6788885 89999999999999999888776899999985 3568999999999877643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 405 | ||||
| 2v8q_E | 330 | Crystal Structure Of The Regulatory Fragment Of Mam | 6e-92 | ||
| 2uv5_A | 152 | Crystal Structure Of A Cbs Domain Pair From The Reg | 2e-42 | ||
| 2uv6_A | 152 | Crystal Structure Of A Cbs Domain Pair From The Reg | 7e-42 | ||
| 3t4n_C | 323 | Structure Of The Regulatory Fragment Of Saccharomyc | 2e-41 | ||
| 2uv7_A | 152 | Crystal Structure Of A Cbs Domain Pair From The Reg | 2e-41 | ||
| 2qlv_C | 315 | Crystal Structure Of The Heterotrimer Core Of The S | 2e-41 | ||
| 2qr1_G | 334 | Crystal Structure Of The Adenylate Sensor From Amp- | 2e-40 | ||
| 2oox_G | 333 | Crystal Structure Of The Adenylate Sensor From Amp- | 2e-40 | ||
| 2nyc_A | 144 | Crystal Structure Of The Bateman2 Domain Of Yeast S | 1e-21 | ||
| 2nye_A | 144 | Crystal Structure Of The Bateman2 Domain Of Yeast S | 6e-21 |
| >pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330 | Back alignment and structure |
|
| >pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323 | Back alignment and structure |
|
| >pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315 | Back alignment and structure |
|
| >pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334 | Back alignment and structure |
|
| >pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333 | Back alignment and structure |
|
| >pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144 | Back alignment and structure |
|
| >pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 4e-89
Identities = 172/312 (55%), Positives = 214/312 (68%), Gaps = 28/312 (8%)
Query: 68 DLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV 127
+ + ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS
Sbjct: 18 QETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK 77
Query: 128 HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN--------------------- 166
Q +VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 78 KQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASL 137
Query: 167 ------LIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKI 219
LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+I
Sbjct: 138 FDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQI 197
Query: 220 GTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL 279
GTY N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NL
Sbjct: 198 GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL 257
Query: 280 DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
DV++ +A +H++ +FEGV KC L ETL ++ R+V AEVHRLVVVDE D V G++SLSDI
Sbjct: 258 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI 317
Query: 340 LVYLVLKPSDDD 351
L LVL +
Sbjct: 318 LQALVLTGGEKK 329
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-10
Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 16/167 (9%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDS-EGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285
+ A + V A P+ DS + V + D IN+ Y + V + E
Sbjct: 49 VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY-YKSALVQIYE 107
Query: 286 ANEHKTDWFEGVEK---------CLLDETLFTVMERIVRAEVHRLVVVDEDD-HVLGVLS 335
EHK + + V + +LF + ++R ++HRL V+D + + L +L+
Sbjct: 108 LEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILT 167
Query: 336 LSDILVYLVLKPSDDDIGVDETSSDSEVPV----DPDLASSDDKVFE 378
IL +L L ++ + S E+ + + + + V+
Sbjct: 168 HKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYV 214
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 5e-88
Identities = 95/329 (28%), Positives = 168/329 (51%), Gaps = 39/329 (11%)
Query: 70 EKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQ 129
+ G + F + YD++PTS +L+VFD L VK + L N I +APLWDS
Sbjct: 7 TQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEAN 66
Query: 130 QYVGMLTITDFIKILQMYYTSSSIT--MEELEEHKLE----------------------- 164
++ G+LT+ DF+ +++ YY SSS + E+++ +L
Sbjct: 67 KFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMH 126
Query: 165 ------TNLIDYKIHRLPVIDEMGN-----VLYILTHKRILRFLFLYINDLPKPSFLNKT 213
+ + R+P+ID G ++ +LT RIL+F+ + + + L
Sbjct: 127 SLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET---AMLRVP 183
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
L + IGT+ N+ T + ET + ++ E+ +SA+P+ +SEG L++++ DV++L +
Sbjct: 184 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 243
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
Y+NLD+++ EA + F+GV C + L + + I + VHRL VVDE+ + G+
Sbjct: 244 GDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGI 303
Query: 334 LSLSDILVYLVLKPSDDDIGVDETSSDSE 362
LSL+DIL Y++ + ++T +
Sbjct: 304 LSLADILNYIIYDKTTTPGVPEQTDNFES 332
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 3e-78
Identities = 98/315 (31%), Positives = 170/315 (53%), Gaps = 38/315 (12%)
Query: 68 DLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV 127
+E+ + KF YD++P S +L+V DT LLVKK+ L+ N I +APLWDS
Sbjct: 13 SIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK 72
Query: 128 HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN--------------------- 166
++ G+LT TDFI ++Q Y+++ E +++ +L+
Sbjct: 73 TSRFAGLLTTTDFINVIQYYFSNPD-KFELVDKLQLDGLKDIERALGVDQLDTASIHPSR 131
Query: 167 --------LIDYKIHRLPVIDEMGN-----VLYILTHKRILRFLFLYINDLPKPSFLNKT 213
+++ + R+P+ID+ V+ +LT RIL+F+ L + FL
Sbjct: 132 PLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE---THFLKIP 188
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
+ DL I T +N+++ T +I ++ + RVS++P+ D G+L++++ +DV+ L
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
Y +L +++ EA ++D FEGV C ++ L T+M+ I +A VHR VVD+ ++GV
Sbjct: 249 GIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV 308
Query: 334 LSLSDILVYLVLKPS 348
L+LSDIL Y++L +
Sbjct: 309 LTLSDILKYILLGSN 323
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 1e-48
Identities = 46/283 (16%), Positives = 97/283 (34%), Gaps = 41/283 (14%)
Query: 91 IPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150
I + K+V ++KA + N R P+ ++ + + VG++T D + +
Sbjct: 8 IAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY 67
Query: 151 SSITMEELEEHKLETN--------------------------LIDYKIHRLPVIDEMGNV 184
+ I + N + + P++++ +
Sbjct: 68 NLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQL 127
Query: 185 LYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244
+ ++T + ++R L I++ + +V + R +
Sbjct: 128 ISLITERDVIRALLDKIDENEV----------IDDYITRDVIVATPGERLKDVARTMVRN 177
Query: 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN--LDVTLKEANEHKTDWF--EGVEKC 300
LP+ EG LV I D I L N ++E + + V
Sbjct: 178 GFRRLPVVS-EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITA 236
Query: 301 LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+ L + E +V ++ L VVDE+ + G+++ D+L Y
Sbjct: 237 KEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 8e-14
Identities = 28/181 (15%), Positives = 66/181 (36%), Gaps = 17/181 (9%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165
+ +A + + AP+ + Q + ++T D I+ L + +++ +
Sbjct: 103 IDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKI-DENEVIDDYITRDVIV 160
Query: 166 ------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKT 213
++ RLPV+ E G ++ I+T ++ L + +
Sbjct: 161 ATPGERLKDVARTMVRNGFRRLPVVSE-GRLVGIITSTDFIKLLGSDWAFNHMQTGNVRE 219
Query: 214 LRDLKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
+ ++++ +V T E + + + ALP+ D + I + DV+
Sbjct: 220 ITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279
Query: 272 A 272
A
Sbjct: 280 A 280
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 215 RDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS-EGHLVDIFAKFDVINLAAE 273
R +KI + + TV T+I AL E + LP+ ++ +V I D+++
Sbjct: 4 RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGG 63
Query: 274 KTYTNLDVTLKEANEHKTDW-------FEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
+ NL E N E V + + +E + V +V++
Sbjct: 64 GSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND 123
Query: 327 DDHVLGVLSLSDILVYLV 344
++ ++ +++ D++ L+
Sbjct: 124 ENQLISLITERDVIRALL 141
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-47
Identities = 50/143 (34%), Positives = 88/143 (61%)
Query: 206 KPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKF 265
+ FL + DL I T +N+++ T +I ++ + RVS++P+ D G+L++++ +
Sbjct: 2 ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY 61
Query: 266 DVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325
DV+ L Y +L +++ EA ++D FEGV C ++ L T+M+ I +A VHR VVD
Sbjct: 62 DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 121
Query: 326 EDDHVLGVLSLSDILVYLVLKPS 348
+ ++GVL+LSDIL Y++L +
Sbjct: 122 DVGRLVGVLTLSDILKYILLGSN 144
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-05
Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKIL-QMYYTSSSITMEEL------ 158
V L + + P+ D + + + D + ++ Y S+++ E
Sbjct: 30 VIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSD 88
Query: 159 ---------EEHKLET---NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFL 199
+ KL T N+ ++HR V+D++G ++ +LT IL+++ L
Sbjct: 89 DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 279 LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSD 338
L + + + N + ++ C + + V++ + + V + ++DE+ +++ V D
Sbjct: 6 LKIPIGDLNIITQ---DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYD 62
Query: 339 ILVYLVLKPSDD 350
+L + +D
Sbjct: 63 VLGLIKGGIYND 74
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-43
Identities = 42/282 (14%), Positives = 91/282 (32%), Gaps = 37/282 (13%)
Query: 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI 153
+ + + AF + GI + + + G+LT D + ++ Y S
Sbjct: 27 IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCS 83
Query: 154 TMEELEEHKLE----------------------TNLIDYKIHRLPVIDEMGNVLYILTHK 191
+ ++ LPV+D + I+T +
Sbjct: 84 QGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTER 143
Query: 192 RILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251
L P F++ V+T+ +E + A++ L R LP+
Sbjct: 144 EFLLLYKDLDEIFPVKVFMST-----------KVQTIYKEVRLDQAVKLMLRRGFRRLPV 192
Query: 252 TDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVME 311
D + +V I + I A K LD K + ++
Sbjct: 193 IDDDNKVVGIVTVVNAIKQLA-KAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAA 251
Query: 312 RIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIG 353
++ + L+++++D+ + G+++ D+L+ L +
Sbjct: 252 EMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVMEKFK 293
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-17
Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 15/215 (6%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ + I R+ V + + +LT + +L + Y D + I Y N
Sbjct: 46 INEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKD-SCSQGDLYHISTTPIIDYMTPN 102
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
TV + A+ + R +LP+ D V I + + + L + +
Sbjct: 103 PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIF 156
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+ V+ + L ++ ++R RL V+D+D+ V+G++++ + + L
Sbjct: 157 PVKVFMS---TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA 213
Query: 345 LKPSDDDIGVDETSSDSEV-PVDPDLASSDDKVFE 378
D +V + V
Sbjct: 214 KAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNR 248
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 6e-16
Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 21/174 (12%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
YK+ PV+++ G ++ I++ KRIL + + L L +V
Sbjct: 27 FKKYKVRSFPVVNKEGKLVGIISVKRILV------------NPDEEQLAML---VKRDVP 71
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
V E ++ A + LE + + DS+G V I D+I K+ V ++
Sbjct: 72 VVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPY 131
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
+ V L ++ ++ + L VVD + +++G++ +D+L
Sbjct: 132 YQRY------VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 42/270 (15%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFI-----KILQMYYTSSSITMEE--- 157
A +R+ P+ + + VG++++ + + L M ++E
Sbjct: 20 RNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDT 78
Query: 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDL 217
L++ +++Y R+ V+D G + ILT I+R + ++ K
Sbjct: 79 LKK--AAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIR-RYFAKSEKYKGV------EIE 129
Query: 218 KIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN-------- 269
V V E T + AL+ L ALP+ DSEG+LV I + D++
Sbjct: 130 PYYQ-RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIM 188
Query: 270 LAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL---------------DETLFTVMERIV 314
+ E ++ + + E++ ++ T+ V ++
Sbjct: 189 KSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMA 248
Query: 315 RAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+ + +L V+ + ++G++ D+L LV
Sbjct: 249 KYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 278
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK-----TYT 277
+N T+ + +AL F + +V + P+ + EG LV I + ++ E+
Sbjct: 9 QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKR 68
Query: 278 NLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLS 337
++ +KE ++TL + ++ + R+VVVD +G+L++
Sbjct: 69 DV-PVVKE-----------------NDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVG 110
Query: 338 DIL-VYLVLKPSDDDIGVDE 356
DI+ Y + ++
Sbjct: 111 DIIRRYFAKSEKYKGVEIEP 130
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 35/202 (17%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQM------------YYTSSSI 153
+KKA ++ R + DS + VG+LT+ D I+ YY
Sbjct: 79 LKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVS 137
Query: 154 T-MEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLY-------INDLP 205
E L+ LPV+D GN++ I+ +LR + +
Sbjct: 138 IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASS 197
Query: 206 KPSFLNKTLRDLKIGTYE--------------NVETVAEETSIIHALRKFLERRVSALPM 251
+ ++ ++ L +E +V ++ K + + LP+
Sbjct: 198 EEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPV 257
Query: 252 TDSEGHLVDIFAKFDVINLAAE 273
EG L+ + FD++ + +
Sbjct: 258 IRGEGDLIGLIRDFDLLKVLVK 279
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-15
Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 16/182 (8%)
Query: 204 LPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFA 263
+P+ + + + N +TV T++ A++ E + L + D G+ V + +
Sbjct: 1 VPRGGHMFMRVEKIMN---SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLS 57
Query: 264 KFDVINLAAEKTYTNLDVTLKE---ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHR 320
+ +I + +V ++ + K D + V + + R
Sbjct: 58 ERSIIKRFIPRNKKPDEVPIRLVMRKP---------IPKVKSDYDVKDVAAYLSENGLER 108
Query: 321 LVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDLASSDDKVFEEN 380
VVD+ V+G+++L+D+ YL D + T + + + V+ E
Sbjct: 109 CAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEP-VYNEK 167
Query: 381 EE 382
E
Sbjct: 168 GE 169
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 3e-15
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 20/166 (12%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT 282
+N+ V TS+ AL +E++V+ LP+ D LV + + +D++ L + + D
Sbjct: 14 QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTN 73
Query: 283 LKEANEHKTDWFEGVEKCLL--------------------DETLFTVMERIVRAEVHRLV 322
L + F ++K + L ++ + RL
Sbjct: 74 LFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLP 133
Query: 323 VVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368
VVD D ++G+L+ +++ + + D + +D+ + D D
Sbjct: 134 VVDADGKLIGILTRGNVVRAALQIKRNADSISGRSQNDTNLFPDVD 179
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 9e-11
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY---- 222
L++ K+ LPVID+ ++ +++ +L + + K
Sbjct: 32 LVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKL 91
Query: 223 --------------ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
+ V + T++ A R LE + LP+ D++G L+ I + +V+
Sbjct: 92 ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV 151
Query: 269 NLAAE 273
A +
Sbjct: 152 RAALQ 156
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
++ +E +V +V L V+D++ ++GV+S D+L + + DS
Sbjct: 22 STSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST 81
Query: 363 VPVDPDLASSDDKV 376
+L K
Sbjct: 82 WKTFNELQKLISKT 95
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-15
Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 7/124 (5%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V E+T I + + LE V+ + LV + ++ ++ + +
Sbjct: 25 KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEE 84
Query: 284 KEANEHKTDWFEGVEK-------CLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
+ K + + +D L ++ ++ + + VVDE ++G L+
Sbjct: 85 LIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS 144
Query: 337 SDIL 340
+IL
Sbjct: 145 LEIL 148
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-11
Identities = 13/113 (11%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFL-YINDLPKPSFLNKTLRDLKIGTYE-- 223
+++ + R + ++ ++ +L+ + +PK + +++ L
Sbjct: 42 ILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI 101
Query: 224 --NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ V +T + AL+ ++ + +P+ D +G +V +++ +
Sbjct: 102 MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 154
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269
+ ++DL +V TV + SI A ++ A+ +TD++G ++ IF + D++
Sbjct: 22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81
Query: 270 LAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDH 329
A + +L ++ T + V +C + T +ME + + V + +
Sbjct: 82 AVAGQGAASLQQSVS---VAMT---KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-NGR 134
Query: 330 VLGVLSLSDILVYLV 344
+ G++S+ D++ +
Sbjct: 135 LAGIISIGDVVKARI 149
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 13/110 (11%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
L +KI + V D G VL I T + +++ + + +N
Sbjct: 53 LHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ----------GAASLQQSVSVAMTKN 102
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
V ++ + R +P+ + G L I + DV+ +
Sbjct: 103 VVRCQHNSTTDQLMEIMTGGRFRHVPVEE-NGRLAGIISIGDVVKARIGE 151
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 8e-14
Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 14/138 (10%)
Query: 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT--DSEGHLVDIFAKFD 266
+ +L ++ E +I + + RV +T D+ V + ++ D
Sbjct: 2 AMAIRTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERD 58
Query: 267 VINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
++ A++ +LD L + + E++ R + +VVV++
Sbjct: 59 ILRAVAQRL--DLDGPAMPIANS-------PITVLDTDPVHVAAEKMRRHNIRHVVVVNK 109
Query: 327 DDHVLGVLSLSDILVYLV 344
+ ++GVLS+ D+
Sbjct: 110 NGELVGVLSIRDLCFERA 127
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 13/109 (11%)
Query: 167 LIDYKIHRLPVI--DEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
L ++ + D + +++ + ILR + ++ L+ I +
Sbjct: 31 LAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-------LDGPAMP--IAN--S 79
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
TV + + A K + + + + G LV + + D+ A
Sbjct: 80 PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-13
Identities = 23/143 (16%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269
+ ++ + + V TS+ A R +E V +L + + +G++V F K D+I
Sbjct: 5 MKAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR 61
Query: 270 LAAEKTYTNLDVTLKE---ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
D+ ++ N + ++ L V+ ++ + +++ +
Sbjct: 62 RVIVPG-LPYDIPVERIMTRN---------LITANVNTPLGEVLRKMAEHRIKHILIEE- 110
Query: 327 DDHVLGVLSLSDILVYLVLKPSD 349
+ ++G+ +LSD+L +
Sbjct: 111 EGKIVGIFTLSDLLEASRRRLET 133
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-06
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
++++ + L VI++ GNV+ T D+ + + D+ + N
Sbjct: 33 MMEFDVGSLVVINDDGNVVGFFTKS-----------DIIRRVIVPGLPYDIPVERIMTRN 81
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ T T + LRK E R+ + + + EG +V IF D++ + +
Sbjct: 82 LITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRR 130
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-13
Identities = 19/132 (14%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Query: 214 LRDLKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
+ + + Y V +V ++ + + E+ + ++ + D V I + D++
Sbjct: 1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAI 59
Query: 272 AEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVL 331
+ +L+ +E + D + + + + + L VVD+ ++
Sbjct: 60 GKGK--SLETKAEEFMTAS------LITIREDSPITGALALMRQFNIRHLPVVDDKGNLK 111
Query: 332 GVLSLSDILVYL 343
G++S+ DI +
Sbjct: 112 GIISIRDITRAI 123
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-07
Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ + I + V+D + I+T + I++ + + K + +
Sbjct: 30 MTEKNIGSVIVVDG-NKPVGIITERDIVKAI------------GKGKSLETKAEEFMTAS 76
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ T+ E++ I AL + + LP+ D +G+L I + D+ +
Sbjct: 77 LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 5e-13
Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V V E ++ A + E + ALP+ + L + D++ T
Sbjct: 17 GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATA 76
Query: 284 KE---ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
E + + + ++ ++ + +V R+ V+ + ++G+++ +DI
Sbjct: 77 GELARDS---------IYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIA 126
Query: 341 VYL 343
+L
Sbjct: 127 RHL 129
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-07
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ ++ I LP+ + + +LT + I+ K G ++
Sbjct: 34 MREHDIGALPICGDDDRLHGMLTDRDIVI----------KGLAAGLDPNTATAGELARDS 83
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ V SI L E +V +P+ E LV I + D+ E
Sbjct: 84 IYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHLPEH 132
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-12
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
KT++ L V + + S+ +A++K + AL + + LV I + D +
Sbjct: 6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKS 64
Query: 272 AEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVL 331
D +KE + V L+ T M I V L V+D D V+
Sbjct: 65 YLLDKPVKDTQVKEIMTRQ------VAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVI 117
Query: 332 GVLSLSDILVYLV 344
G+LS+ D++ +
Sbjct: 118 GLLSIGDLVKDAI 130
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-12
Identities = 29/146 (19%), Positives = 67/146 (45%), Gaps = 30/146 (20%)
Query: 210 LNKTLRDLKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV 267
+ TL+++K+ +NV T ++ A K L+ ++S+LP+ D E ++ I D+
Sbjct: 1 MIDTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDI 60
Query: 268 INLAAEKTYTNLDVTLKE--------ANEHKTDWFEGVEKCLLDETLFTVMERIVRAE-- 317
Y L+ T+ + +E D ++ ++++ +
Sbjct: 61 GYNLIRDKY-TLETTIGDVMTKDVITIHE--------------DASILEAIKKMDISGKK 105
Query: 318 ---VHRLVVVDEDDHVLGVLSLSDIL 340
+++L VVD+++ ++G++S DI+
Sbjct: 106 EEIINQLPVVDKNNKLVGIISDGDII 131
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-09
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
++ YKI LPVID+ V+ I+T D+ +K + IG ++
Sbjct: 34 MLKYKISSLPVIDDENKVIGIVTTT-----------DIGYNLIRDKYTLETTIGDVMTKD 82
Query: 225 VETVAEETSIIHALRKFL-----ERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
V T+ E+ SI+ A++K E ++ LP+ D LV I + D+I ++
Sbjct: 83 VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK 136
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI------------ 153
V +AF ++ I + P+ D + +G++T TD L +
Sbjct: 27 VVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVIT 85
Query: 154 -----TMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
++ E + + + I++LPV+D+ ++ I++ I+R +
Sbjct: 86 IHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 5e-12
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 207 PSFLNKTLRDL---KIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFA 263
P ++ T+ + K + + TV + + A++ E+ + AL + D + I
Sbjct: 2 PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVT 60
Query: 264 KFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVV 323
+ D + ++ ++E K V ++ M + + L V
Sbjct: 61 ERDYARKVVLQERSSKATRVEEIMTAK------VRYVEPSQSTDECMALMTEHRMRHLPV 114
Query: 324 VDEDDHVLGVLSLSDILVYLV 344
+D ++G++S+ D++ ++
Sbjct: 115 LD-GGKLIGLISIGDLVKSVI 134
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-11
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT 282
+V+T+ S+ LR ++E + + EG V I +DV+ AE +V
Sbjct: 9 TDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLA-EVK 66
Query: 283 LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342
+ E + T+ E++V+ V RL+V EDD ++GV+S +DIL
Sbjct: 67 VW---EVMERDLVTISP---RATIKEAAEKMVKNVVWRLLVE-EDDEIIGVISATDILRA 119
Query: 343 LVLKP 347
+ K
Sbjct: 120 KMAKR 124
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 1e-07
Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
++ V+ E G + I+T +L + L ++K+ +
Sbjct: 27 YVENAKGSSVVVKE-GVRVGIVTTWDVLEAIAE-----------GDDLAEVKVWEVMERD 74
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY 276
+ T++ +I A K ++ V L + + + ++ + + D++ K Y
Sbjct: 75 LVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKMAKRY 125
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 203 DLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIF 262
+PK F ++DL I + E V V + HAL ++ SA+P+ D L +
Sbjct: 6 SIPKDEFQQIFVKDLMI-SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLI 64
Query: 263 AKFDVINLAAEKTYTNL----DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEV 318
+ +++ ++ +++ + + L+++ +E + +
Sbjct: 65 STAMILDGILGLERIEFERLEEMKVEQVMKQD------IPVLKLEDSFAKALEMTI--DH 116
Query: 319 HRLVVVDEDDHVLGVLSLSDILVYL 343
+ V+ED + G+L+ IL L
Sbjct: 117 PFICAVNEDGYFEGILTRRAILKLL 141
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 26/138 (18%)
Query: 89 DLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYY 148
DL+ +S K+ ++ A LV +G A P+ D + G+++ IL
Sbjct: 19 DLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILDGIL 74
Query: 149 TSSSITMEELEEHKLET--------------------NLIDYKIHRLPVIDEMGNVLYIL 188
I E LEE K+E ID+ + ++E G IL
Sbjct: 75 GLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGIL 132
Query: 189 THKRILRFLFLYINDLPK 206
T + IL+ L + +
Sbjct: 133 TRRAILKLLNKKVRQHNR 150
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-11
Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 9/138 (6%)
Query: 208 SFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV 267
L T+ I + V V ++ HAL + +A+P+ D L + +
Sbjct: 10 QLLEATVGQFMIEA-DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68
Query: 268 INLAAEKTYTNLDVTLKEANEH--KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325
+N + + E TD + + +++ + ++ + V +
Sbjct: 69 MNSIFGLERIEFEKLDQITVEEVMLTD----IPRLHINDPIMKGFGMVI--NNGFVCVEN 122
Query: 326 EDDHVLGVLSLSDILVYL 343
++ G+ + +L L
Sbjct: 123 DEQVFEGIFTRRVVLKEL 140
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-05
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 23/135 (17%)
Query: 90 LIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT 149
+I K+ ++ A L G A P+ D + G++ I+ +
Sbjct: 20 MIEAD-KVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNM---IMNSIFG 74
Query: 150 SSSITMEELEEHKLE-------------TNLID-----YKIHRLPVIDEMGNVLYILTHK 191
I E+L++ +E ++ + V ++ I T +
Sbjct: 75 LERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRR 134
Query: 192 RILRFLFLYINDLPK 206
+L+ L +I L K
Sbjct: 135 VVLKELNKHIRSLNK 149
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-11
Identities = 18/129 (13%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
+ E S+ A+ V L + D + LV + ++ D++ + + V +
Sbjct: 28 VIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-ELTSVPVHII 86
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD---HVLGVLSLSDILVYL 343
+ + C ++ + + + ++ ++ L V+ + D V+G ++ +++ L
Sbjct: 87 MTRMPN----ITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142
Query: 344 VLKPSDDDI 352
V ++ +
Sbjct: 143 VSLSENEIL 151
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-08
Identities = 18/130 (13%), Positives = 48/130 (36%), Gaps = 20/130 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY---- 222
+ + L V+D ++ +L+ K DL + S + L + +
Sbjct: 42 MFLEDVGTLFVVDRDAVLVGVLSRK-----------DLLRASIGQQELTSVPVHIIMTRM 90
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEG---HLVDIFAKFDVINLAAEKTYTNL 279
N+ E ++ + +E+++ ALP+ ++ K ++ + +
Sbjct: 91 PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS--LSEN 148
Query: 280 DVTLKEANEH 289
++ L+ + H
Sbjct: 149 EILLQHHHHH 158
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 21/134 (15%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT----YTNL 279
+ V E ++ L + + + + + D EGH + K D+++L + + +
Sbjct: 22 DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLP 81
Query: 280 DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
D + E ++ + + + + L VVDE+ + G +SL D
Sbjct: 82 DFFVHE-----------------EDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF 124
Query: 340 LVYLVLKPSDDDIG 353
L L+ + D G
Sbjct: 125 LEALIEALAMDVPG 138
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 169 DYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETV 228
Y+ + V D G+ ++ + +L L+ ++ + V
Sbjct: 41 QYQTNECIVKDREGHFRGVVNKEDLLDLD------------LDSSVFNK---VSLPDFFV 85
Query: 229 AEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275
EE +I HAL FLE + LP+ D E L + D + E
Sbjct: 86 HEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 7/137 (5%)
Query: 208 SFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV 267
F+ T++ I + V V + HAL + SA+P+ D+ L + + +
Sbjct: 7 EFMQMTVKPFLIPA-DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM 65
Query: 268 INLAAEKTYTNLDVTLK-EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
++ + + E + D++L + IV + V ++
Sbjct: 66 MDAILGLERIEFERLETMKVEEVMNRNIPRLRL---DDSLMKAVGLIVNH--PFVCVEND 120
Query: 327 DDHVLGVLSLSDILVYL 343
D + G+ + ++L L
Sbjct: 121 DGYFAGIFTRREVLKQL 137
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 8e-09
Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
L +PV+D + +++ ++ + L + L +K+ N
Sbjct: 39 LTKTGYSAIPVLDTSYKLHGLISMTMMMDAI------LGLERIEFERLETMKVEEVMNRN 92
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
+ + + S++ A+ + + + + +G+ IF + +V+
Sbjct: 93 IPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ I +P++D +L I++ + +L + L + + + + + +
Sbjct: 31 MEALDIRHVPIVDANKKLLGIVSQRDLLAAQE---SSLQRSAQGDSLAFETPLFEVMHTD 87
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
V +VA + + + + ++ LP+ + LV I D + +A +
Sbjct: 88 VTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLELQEESEPD 146
Query: 285 EANE 288
E +E
Sbjct: 147 ELDE 150
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-09
Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 31/158 (19%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLV------DI-FAKFDVINLAAEKTY 276
+ T+ ++ A + +P+ D+ L+ D+ A+ + +A+
Sbjct: 14 HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDS 73
Query: 277 TNLDVTLKE--------ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD 328
+ L E L + + ++ L VV D
Sbjct: 74 LAFETPLFEVMHTDVTSVAP--------------QAGLKESAIYMQKHKIGCLPVVA-KD 118
Query: 329 HVLGVLSLSDILVYLV-LKPSDDDIGVDETSSDSEVPV 365
++G+++ SD + + L ++ DE + E
Sbjct: 119 VLVGIITDSDFVTIAINLLELQEESEPDELDEEQEGHH 156
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 5e-10
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT------ 277
T SI+ A + ++ ++ LP+ D G LV I +D+ A+ T
Sbjct: 10 PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMT 69
Query: 278 -NLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
N+ +T E DE + V ++ + + + VVD+ V+G+++
Sbjct: 70 RNV-ITAHE-----------------DEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTS 111
Query: 337 SDIL 340
DI
Sbjct: 112 EDIS 115
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-09
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 17/110 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
LI + I+ LP++DE G ++ I+T I + L I N
Sbjct: 27 LIKHNINHLPIVDEHGKLVGIITSWDIAKAL---------------AQNKKTIEEIMTRN 71
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
V T E+ + H K + +S +P+ D +V I D+ L K
Sbjct: 72 VITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK 121
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-09
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
S A R+ + P+ D + + + L K + + L E
Sbjct: 17 VFTLGGSTADAARRLAASGCACAPVLD-GERYLGMVHLSRL--LEGRKGWPTVKEKLGEE 73
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
E V E LF + + A+ + + DED GV+S IL +L
Sbjct: 74 ------LLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 93 TSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSS 152
VF A L +G AP+ D ++Y+GM+ ++ ++ + + +
Sbjct: 11 AETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRK-GWPTVK 67
Query: 153 ITMEELEEHKLET------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
+ E + + ++ K +P+ DE G +++ KRIL FL
Sbjct: 68 EKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-06
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
L PV+D L ++ R+L + + L + + E V
Sbjct: 31 LAASGCACAPVLDG-ERYLGMVHLSRLLE-------GRKGWPTVKEKLGEELL---ETVR 79
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ + L + S +P+ D +G + ++ ++ AE+
Sbjct: 80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER 127
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 4e-08
Identities = 53/352 (15%), Positives = 110/352 (31%), Gaps = 104/352 (29%)
Query: 73 GGNQIFVKFF--------KFHKC-YDLIPTS---------------AKLVVFDTQLLVKK 108
NQ+F K+ K + +L P A V + V+
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQC 178
Query: 109 AFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH----KLE 164
++ W ++ + +++LQ +H KL
Sbjct: 179 KMDFKIF--------WLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 165 TNLIDYKIHRLPVIDEMGNVLYILTH---KRILRFLFLYINDLPKPSFLN--KTL---RD 216
+ I ++ RL N L +L + + +F K L R
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN------------AFNLSCKILLTTRF 274
Query: 217 LKIGTYENVETVAEETSIIHA-----------LRKFLERRVSALPMTDSEGH--LVDIFA 263
++ + + T + H+ L K+L+ R LP + + I A
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 264 KF--DVIN-------LAAEKTYTNLDVTLK--EANEHKTDWF-------EGV---EK--C 300
+ D + + +K T ++ +L E E++ F
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLS 393
Query: 301 LL-DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351
L+ + + + + +V ++H+ +V++ +S+ I YL LK ++
Sbjct: 394 LIWFDVIKSDVMVVV-NKLHKYSLVEKQPK-ESTISIPSI--YLELKVKLEN 441
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 8e-08
Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 6/122 (4%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE--GHLVDIFAKFDVINLAAEKTYTNLDV 281
++ T+A++T + ++ V+ P+ +S LV I + ++ + +
Sbjct: 22 SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG 81
Query: 282 TLKEANEHKTDWFEGVEKCL---LDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSD 338
+ + L + TL + L V +G +S +
Sbjct: 82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFV-TSRGRAVGCVSWVE 140
Query: 339 IL 340
+
Sbjct: 141 MK 142
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 4e-05
Identities = 16/124 (12%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDV 281
+ + +A E S+ A ++ + ++P+ D HL+ + + ++ + +N+
Sbjct: 14 MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILA 73
Query: 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRA-EVHRLVVVDEDDHVLGVLSLSDIL 340
+ ++ D + + +E + +V A + L + + ++I
Sbjct: 74 KSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQ 133
Query: 341 VYLV 344
L+
Sbjct: 134 AELI 137
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 2e-04
Identities = 26/207 (12%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIG------ 220
+ D + +PV D ++L +L+ I + L
Sbjct: 33 MRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQN 92
Query: 221 -----------------TYENVETVAEETSII------HALRKFLERRVSALPMTDSEGH 257
E+++ E I + +E +VS L +T
Sbjct: 93 INEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTP 152
Query: 258 LVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDW----FEGVEKCLLDETLFTVMERI 313
+I N+ T + + + + + D+ + V +
Sbjct: 153 SKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTM 212
Query: 314 VRAEVHRLVVVDEDDHVLGVLSLSDIL 340
V+DE++ V+G ++ ++
Sbjct: 213 SETRYSNYPVIDENNKVVGSIARFHLI 239
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 170 YKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229
YKI LPV+DE G ++ +LT+ R +RF +L K T R E +
Sbjct: 124 YKIGGLPVVDEEGRLVGLLTN-RDVRF----EKNLSKKIKDLMTPR-------EKLIVAP 171
Query: 230 EETSIIHALRKFLERRVSALPMTDSEGHLV 259
+ S+ A + R+ LP+ + LV
Sbjct: 172 PDISLEKAKEILHQHRIEKLPLVSKDNKLV 201
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 170 YKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229
+ PV+ E ++ I+T R +RF + DL K T + E + TV
Sbjct: 118 HGFAGFPVVTENNELVGIITG-RDVRF----VTDLTKSVAAVMTPK-------ERLATVK 165
Query: 230 EETSIIHALRKFLERRVSALPMTDSEGHLV 259
E + K + RV + + + E L
Sbjct: 166 EGATGAEVQEKMHKARVEKILVVNDEFQLK 195
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 170 YKIHRLPVIDEMGN--VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227
Y+I +P+++ + N ++ I+T+ R +RF I+D P + + T E++ T
Sbjct: 119 YRISGVPIVETLANRKLVGIITN-RDMRF----ISDYNAP------ISE--HMTSEHLVT 165
Query: 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLV 259
A T + A R E R+ LP+ D+ G L
Sbjct: 166 AAVGTDLETAERILHEHRIEKLPLVDNSGRLS 197
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 170 YKIHRLPVID--EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227
Y+I +PV++ + ++ I+T+ R +RF I D + D + T E + T
Sbjct: 142 YRISGVPVVNNLDERKLVGIITN-RDMRF----IQDYSIK------ISD--VMTKEQLIT 188
Query: 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLV 259
T++ A + + ++ LP+ D+ G L
Sbjct: 189 APVGTTLSEAEKILQKYKIEKLPLVDNNGVLQ 220
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 100.0 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 100.0 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 100.0 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.98 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.98 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.96 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.88 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.86 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.85 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.82 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.82 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.82 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.81 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.81 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.8 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.8 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.8 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.8 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.79 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.78 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.78 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.78 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.78 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.78 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.77 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.76 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.76 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.76 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.75 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.75 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.75 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.75 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.75 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.75 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.75 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.75 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.74 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.74 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.74 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.74 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.74 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.74 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.74 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.73 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.73 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.73 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.73 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.72 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.71 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.71 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.7 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.7 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.7 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.69 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.69 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.69 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.69 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.67 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.67 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.66 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.66 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.66 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.66 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.65 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.65 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.64 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.64 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.64 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.64 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.63 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.63 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.63 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.62 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.62 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.62 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.62 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.61 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.61 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.61 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.6 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.6 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.6 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.59 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.59 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.58 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.58 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.58 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.57 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.56 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.56 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.56 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.55 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.55 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.54 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.53 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.53 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.53 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.49 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.48 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.47 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.43 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.39 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.39 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.37 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.36 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.34 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.33 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.31 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.31 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.3 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.3 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.29 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.21 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.15 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.14 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.09 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.08 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.08 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 99.05 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.97 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.92 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.88 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.79 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.77 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 98.75 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.6 |
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=299.06 Aligned_cols=273 Identities=35% Similarity=0.642 Sum_probs=226.6
Q ss_pred ccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC
Q psy744 71 KDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150 (405)
Q Consensus 71 ~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~ 150 (405)
++...+.+.+||+.++|||+||.+.++++++.+.++.+|++.|.+++++++||||++.++++|++|..|++..+..++..
T Consensus 16 ~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~ 95 (323)
T 3t4n_C 16 QQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSN 95 (323)
T ss_dssp HHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcC
Confidence 34457888899999999999999999999999999999999999999999999998767999999999999987654332
Q ss_pred CCC----------CHHHHhh---------------c---cHHHHHHhcCCCEEEEEeCCCC-----EEEEEeHHHHHHHH
Q psy744 151 SSI----------TMEELEE---------------H---KLETNLIDYKIHRLPVIDEMGN-----VLYILTHKRILRFL 197 (405)
Q Consensus 151 ~~~----------~~~~l~~---------------~---~i~~~l~~~~i~~lpVvd~~~~-----vvgilt~~dIl~~l 197 (405)
+.. .+.++.. . .+...|.+++++++||+|+++. ++|++|.+|+++++
T Consensus 96 ~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l 175 (323)
T 3t4n_C 96 PDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFV 175 (323)
T ss_dssp GGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHH
Confidence 210 0111110 0 1122789999999999997765 99999999999998
Q ss_pred HHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc
Q psy744 198 FLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT 277 (405)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~ 277 (405)
..+... ..+...++++++.++.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++++..+.+.
T Consensus 176 ~~~~~~---~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~ 252 (323)
T 3t4n_C 176 ALNCRE---THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 252 (323)
T ss_dssp HHHCGG---GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHH
T ss_pred HhcCCc---hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhh
Confidence 765432 33456689999554468899999999999999999999999999999999999999999999988766444
Q ss_pred chhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 278 NLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 278 ~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
.+..++.++|........++.+|++++++.++++.|.+++++++||+|++|+++|+||.+||++++..+
T Consensus 253 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 253 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp HTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred hccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 556678888653222223789999999999999999999999999999899999999999999999854
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=286.82 Aligned_cols=277 Identities=59% Similarity=0.954 Sum_probs=229.3
Q ss_pred hccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC
Q psy744 70 EKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT 149 (405)
Q Consensus 70 ~~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~ 149 (405)
+.+.+.+.|++||+..+|+|+|+.+.++++++++.++.+|++.|.+++++++||+|++.++++|++|..|++..+.....
T Consensus 20 ~~~~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~ 99 (330)
T 2v8q_E 20 TPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK 99 (330)
T ss_dssp ---CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHh
Confidence 45566888999999999999999999999999999999999999999999999999876799999999999987654321
Q ss_pred CC--------CCCHHHHh-------h------------ccHHHHHHhcCCCEEEEEeC-CCCEEEEEeHHHHHHHHHHhh
Q psy744 150 SS--------SITMEELE-------E------------HKLETNLIDYKIHRLPVIDE-MGNVLYILTHKRILRFLFLYI 201 (405)
Q Consensus 150 ~~--------~~~~~~l~-------~------------~~i~~~l~~~~i~~lpVvd~-~~~vvgilt~~dIl~~l~~~~ 201 (405)
.+ ......+. . ..+...|.+++++++||+|+ +|+++|++|..|+++++....
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~ 179 (330)
T 2v8q_E 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 179 (330)
T ss_dssp HHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred ccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHh
Confidence 10 01111111 0 01223788999999999997 899999999999999887665
Q ss_pred CCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhh
Q psy744 202 NDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDV 281 (405)
Q Consensus 202 ~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~ 281 (405)
...+...++..+++++.++..+++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++......+..++.
T Consensus 180 ~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~ 259 (330)
T 2v8q_E 180 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDV 259 (330)
T ss_dssp CSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSS
T ss_pred hccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccC
Confidence 54434455667777875443368899999999999999999999999999998899999999999998876554444567
Q ss_pred hHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
++.+++..+..|.+++.++.+++++.++++.|.+++++++||+|++|+++|+||..||++++...
T Consensus 260 ~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~ 324 (330)
T 2v8q_E 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT 324 (330)
T ss_dssp BHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred cHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhh
Confidence 88888765556678999999999999999999999999999999889999999999999999854
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=269.01 Aligned_cols=272 Identities=33% Similarity=0.628 Sum_probs=218.0
Q ss_pred hhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC---C
Q psy744 74 GNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT---S 150 (405)
Q Consensus 74 ~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~---~ 150 (405)
-.+.+.+|+..++|+|+|+.+.++++++++.++.+|++.|.+++++++||+|++.++++|++|..|++.++...+. .
T Consensus 11 ~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~ 90 (334)
T 2qrd_G 11 ALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF 90 (334)
T ss_dssp HHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCC
Confidence 4677888999999999999888999999999999999999999999999999876899999999999987754321 1
Q ss_pred C-------CCCHHHHhh---------------------ccHHHHHHhcCCCEEEEEeCCC-C----EEEEEeHHHHHHHH
Q psy744 151 S-------SITMEELEE---------------------HKLETNLIDYKIHRLPVIDEMG-N----VLYILTHKRILRFL 197 (405)
Q Consensus 151 ~-------~~~~~~l~~---------------------~~i~~~l~~~~i~~lpVvd~~~-~----vvgilt~~dIl~~l 197 (405)
+ ......+.+ ..+...|.+++++++||+|++| + ++|++|.+|+++++
T Consensus 91 ~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~ 170 (334)
T 2qrd_G 91 PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI 170 (334)
T ss_dssp GGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHH
T ss_pred ccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHH
Confidence 1 112222210 0112378899999999999655 4 99999999999988
Q ss_pred HHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc
Q psy744 198 FLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT 277 (405)
Q Consensus 198 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~ 277 (405)
.....+ ..+...++++++..+.+++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++.+..+.+.
T Consensus 171 ~~~~~~---~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~ 247 (334)
T 2qrd_G 171 SMNCKE---TAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYS 247 (334)
T ss_dssp HHHCGG---GGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGG
T ss_pred Hhhccc---hhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccc
Confidence 653221 12334577885322247889999999999999999999999999999889999999999999988765434
Q ss_pred chhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q psy744 278 NLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPS 348 (405)
Q Consensus 278 ~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~ 348 (405)
....++.++|.......+++.+|++++++.++++.|.+++++++||+|++|+++|+||..||++++.....
T Consensus 248 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~ 318 (334)
T 2qrd_G 248 NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKT 318 (334)
T ss_dssp GGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC
T ss_pred cccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhccc
Confidence 45667777754110001478899999999999999999999999999988999999999999999986543
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=249.23 Aligned_cols=240 Identities=20% Similarity=0.327 Sum_probs=192.1
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC--------C------C
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT--------S------S 151 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~--------~------~ 151 (405)
++.+++. +++++++++++++.+|+++|.+++++++||+|++.++++|++|..|++.++..... . .
T Consensus 4 ~v~~~i~-~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
T 3kh5_A 4 RVMKIAQ-NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAI 82 (280)
T ss_dssp BGGGTSC-CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHT
T ss_pred hHHHHhc-CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHh
Confidence 4445543 34899999999999999999999999999999744899999999999987632110 0 0
Q ss_pred CCCHHHHhhc------------cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccc
Q psy744 152 SITMEELEEH------------KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKI 219 (405)
Q Consensus 152 ~~~~~~l~~~------------~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~ 219 (405)
..++.++... .+...|.+++++++||+|++|+++|++|.+|+++.+..... ...+++++|
T Consensus 83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-------~~~~v~~~m- 154 (280)
T 3kh5_A 83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKID-------ENEVIDDYI- 154 (280)
T ss_dssp TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSC-------TTCBSGGGC-
T ss_pred hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCC-------CCCCHHHHh-
Confidence 1112222111 12238899999999999999999999999999998765332 133788888
Q ss_pred cccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc----------cchhhhHHHhhhc
Q psy744 220 GTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY----------TNLDVTLKEANEH 289 (405)
Q Consensus 220 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~----------~~l~~~v~~~~~~ 289 (405)
.+++.++.+++++.++++.|.+++++++||+ ++|+++|+||.+|+++.+..... ...+.++.++
T Consensus 155 --~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--- 228 (280)
T 3kh5_A 155 --TRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEI--- 228 (280)
T ss_dssp --BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHH---
T ss_pred --CCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHH---
Confidence 3788999999999999999999999999999 57999999999999988754310 0023445555
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
|.+++.++++++++.+|++.|.+++++++||+|++|+++|+||.+||++++
T Consensus 229 ---m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 229 ---MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp ---SBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred ---hcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence 568899999999999999999999999999999889999999999999876
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-32 Score=256.06 Aligned_cols=240 Identities=16% Similarity=0.212 Sum_probs=196.7
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhh----------CCCCC
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYY----------TSSSI 153 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~----------~~~~~ 153 (405)
..++.|+| +.+++++++++++.+|++.|.+++++++||+| ++++|++|..|+++.+.... .....
T Consensus 19 ~~~V~dim--~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~ 93 (296)
T 3ddj_A 19 GMNIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT 93 (296)
T ss_dssp CSSGGGTC--EESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred ccCHHHhc--cCCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhHHHhcc
Confidence 56888999 66899999999999999999999999999999 79999999999998763110 00011
Q ss_pred CHHHHhhc------------cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccc
Q psy744 154 TMEELEEH------------KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGT 221 (405)
Q Consensus 154 ~~~~l~~~------------~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~ 221 (405)
++.++... .+...|.+++++++||+|++|+++|++|..|+++.+.... ...+++++|
T Consensus 94 ~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~--------~~~~v~~~m--- 162 (296)
T 3ddj_A 94 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD--------EIFPVKVFM--- 162 (296)
T ss_dssp BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC--------CCCBHHHHS---
T ss_pred cHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc--------ccccHHHhh---
Confidence 12221110 1223889999999999998999999999999997664321 234788888
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc-----chhhhHHHhhhccccCccC
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT-----NLDVTLKEANEHKTDWFEG 296 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~-----~l~~~v~~~~~~~~~~~~~ 296 (405)
.+++.++.+++++.++++.|.+++++++||+|++|+++|+||..|+++.+...... ....++.++ |.++
T Consensus 163 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~------m~~~ 236 (296)
T 3ddj_A 163 STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV------MVTN 236 (296)
T ss_dssp BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHH------SBCC
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHH------hCCC
Confidence 37889999999999999999999999999999999999999999999887643110 123345555 6678
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
+.+|.+++++.+|++.|.+++++++||+|++|+++|+||.+||++++..
T Consensus 237 ~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~ 285 (296)
T 3ddj_A 237 LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 285 (296)
T ss_dssp CCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999974
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-30 Score=241.53 Aligned_cols=243 Identities=19% Similarity=0.250 Sum_probs=173.1
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHh-----hCC------CCCC
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMY-----YTS------SSIT 154 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~-----~~~------~~~~ 154 (405)
++.|+| +.++++++++.++.+|++.|.+++++++||+|++ ++++|++|..|++..+... +.. +..+
T Consensus 2 ~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~~~~v~~~m~~~~~~v~~~~~ 78 (282)
T 2yzq_A 2 RVKTIM--TQNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDT 78 (282)
T ss_dssp BHHHHS--EESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------CCCBSCCCEEETTSB
T ss_pred chHHhc--cCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhccCCHHHHcCCCCcEECCCCc
Confidence 456777 4678999999999999999999999999999975 8999999999998665321 111 1112
Q ss_pred HHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHH-HHHHhhCCCCCccccccccccccccccCCeeEEcCCCC
Q psy744 155 MEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILR-FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETS 233 (405)
Q Consensus 155 ~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~-~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 233 (405)
+.++ ...|.+++++++||+|++|+++|++|..|+++ ++... ......+++++| .+++.++.++++
T Consensus 79 l~~a-----~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~------~~~~~~~v~~~m---~~~~~~v~~~~~ 144 (282)
T 2yzq_A 79 LKKA-----AKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS------EKYKGVEIEPYY---QRYVSIVWEGTP 144 (282)
T ss_dssp HHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC------SGGGGCBSTTTS---BSCCCCEETTSB
T ss_pred HHHH-----HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhcc------CCcccCcHHHHh---CCCCEEECCCCC
Confidence 2222 23889999999999998899999999999998 65421 112345778888 378899999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH------HHHH------hc--------cccch-hhhHHH--hhhcc
Q psy744 234 IIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI------NLAA------EK--------TYTNL-DVTLKE--ANEHK 290 (405)
Q Consensus 234 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~------~~~~------~~--------~~~~l-~~~v~~--~~~~~ 290 (405)
+.++++.|.+++++++||+|++|+++|++|..|++ +... .. ..... ...... -..+.
T Consensus 145 l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (282)
T 2yzq_A 145 LKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVA 224 (282)
T ss_dssp HHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CCCBGG
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHH
Confidence 99999999999999999999889999999999998 4332 00 00000 000000 01234
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
+.|.+++.++++++++.+|+++|.+++++++||+|++|+++|+||.+||++++..
T Consensus 225 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 225 EIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp GTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred HhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence 5577899999999999999999999999999999987899999999999998863
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=186.91 Aligned_cols=167 Identities=26% Similarity=0.386 Sum_probs=139.1
Q ss_pred HHHhcCCCEEEEEeC-CCCEEEEEeHHHHHHHHHHh-----hCCCCCc---cccccccccccccccCCeeEEcCCCCHHH
Q psy744 166 NLIDYKIHRLPVIDE-MGNVLYILTHKRILRFLFLY-----INDLPKP---SFLNKTLRDLKIGTYENVETVAEETSIIH 236 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~-~~~vvgilt~~dIl~~l~~~-----~~~~~~~---~~~~~~v~~i~~~~~~~~~~v~~~~~l~~ 236 (405)
.|.+++++++||+|+ +|+++|++|.+||++++... ....... .....+++++|. ++++++.+++++.+
T Consensus 29 ~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~---~~~~~v~~~~~~~~ 105 (280)
T 3kh5_A 29 TMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIME---ENVITLKENADIDE 105 (280)
T ss_dssp HHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSB---CSCCCEETTCBHHH
T ss_pred HHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcC---CCCEEECCCCCHHH
Confidence 899999999999995 89999999999999876321 1111111 122458888884 68999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHc
Q psy744 237 ALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRA 316 (405)
Q Consensus 237 a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~ 316 (405)
+++.|.+++++++||+|++|+++|++|.+|+++.+...... ..++.+ .|.+++.++++++++.++++.|.++
T Consensus 106 a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~--~~~v~~------~m~~~~~~v~~~~~l~~~~~~~~~~ 177 (280)
T 3kh5_A 106 AIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDE--NEVIDD------YITRDVIVATPGERLKDVARTMVRN 177 (280)
T ss_dssp HHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCT--TCBSGG------GCBCSCCCBCTTCBHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCC--CCCHHH------HhCCCCeEECCCCcHHHHHHHHHHc
Confidence 99999999999999999999999999999999887655321 223444 3668899999999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 317 EVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 317 ~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+++++||+ ++|+++|+||.+||++++.
T Consensus 178 ~~~~~~Vv-~~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 178 GFRRLPVV-SEGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp TCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence 99999999 5899999999999999985
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=182.08 Aligned_cols=183 Identities=18% Similarity=0.239 Sum_probs=150.1
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc--
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH-- 161 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~-- 161 (405)
..++.++| +.+++++.++.++.+|++.|.+++++.+||+|++ ++++|++|..|+++.+.... ...++.++...
T Consensus 92 ~~~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~--~~~~v~~~m~~~~ 166 (296)
T 3ddj_A 92 TTPIIDYM--TPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLD--EIFPVKVFMSTKV 166 (296)
T ss_dssp TSBGGGTS--EESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSC--CCCBHHHHSBCSC
T ss_pred cccHHHhc--cCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhccc--ccccHHHhhcCCC
Confidence 56899999 5578999999999999999999999999999987 89999999999997654221 11223332211
Q ss_pred ----------cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCC
Q psy744 162 ----------KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEE 231 (405)
Q Consensus 162 ----------~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~ 231 (405)
.+...|.+++++++||+|++|+++|++|..|+++.+...+..+........++.++| .+++.++.++
T Consensus 167 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m---~~~~~~v~~~ 243 (296)
T 3ddj_A 167 QTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM---VTNLVTIDEL 243 (296)
T ss_dssp CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHS---BCCCCBCCTT
T ss_pred eEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHh---CCCCeEECCC
Confidence 122388999999999999999999999999999988754443322333456888888 3788999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 232 TSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 232 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++.+|++.|.+++++++||+|++|+++|+||..||++++...
T Consensus 244 ~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~ 286 (296)
T 3ddj_A 244 ASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 286 (296)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=179.71 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=120.5
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
.|.+++++++||+|++|+++|++|..|+++.+. +.+++++|. +++.++.+++++.++++.|.+++
T Consensus 26 ~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~~------------~~~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~ 90 (282)
T 2yzq_A 26 LFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD------------EEQLAMLVK---RDVPVVKENDTLKKAAKLMLEYD 90 (282)
T ss_dssp ------CCEEEEECTTCCEEEEEESSCC----------------------CCCB---SCCCEEETTSBHHHHHHHHHHHT
T ss_pred HHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhhc------------cCCHHHHcC---CCCcEECCCCcHHHHHHHHHHcC
Confidence 788899999999998899999999999986442 347888883 56899999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHH-HHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEE
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVIN-LAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVV 324 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~-~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 324 (405)
.+.+||+|++|+++|++|..|+++ .+..+. .....++ .+.|..++.++.+++++.++++.|.+++++++||+
T Consensus 91 ~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~-~~~~~~v------~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv 163 (282)
T 2yzq_A 91 YRRVVVVDSKGKPVGILTVGDIIRRYFAKSE-KYKGVEI------EPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVV 163 (282)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHTTTTCS-GGGGCBS------TTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEE
T ss_pred CCEEEEEcCCCEEEEEEEHHHHHHHHHhccC-CcccCcH------HHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence 999999998899999999999998 655321 1112233 34466888999999999999999999999999999
Q ss_pred cCCCcEEEEEeHHHHH
Q psy744 325 DEDDHVLGVLSLSDIL 340 (405)
Q Consensus 325 d~~g~lvGiIt~~DIl 340 (405)
|++|+++|+||..|++
T Consensus 164 d~~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 164 DSEGNLVGIVDETDLL 179 (282)
T ss_dssp CTTSCEEEEEEGGGGG
T ss_pred cCCCeEEEEEEHHHHh
Confidence 9889999999999999
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-20 Score=175.42 Aligned_cols=223 Identities=13% Similarity=0.158 Sum_probs=155.9
Q ss_pred HHHhcCCCEEEEEeCC-CCEEEEEeHHHHHHHHHHhhCC--CCCccccc-------cccccccccccCCeeEEcCCCCHH
Q psy744 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYIND--LPKPSFLN-------KTLRDLKIGTYENVETVAEETSII 235 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~-~~vvgilt~~dIl~~l~~~~~~--~~~~~~~~-------~~v~~i~~~~~~~~~~v~~~~~l~ 235 (405)
.|.+++++++||++++ ++++|++|.+|++..+...... .....+.. ..++++| .++++++.+++++.
T Consensus 62 ~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im---~~~~~~v~~~~~~~ 138 (330)
T 2v8q_E 62 ALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDS---FKPLVCISPNASLF 138 (330)
T ss_dssp HHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSS---CCCCCCBCTTSBHH
T ss_pred HHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcc---cCCceEeCCCCCHH
Confidence 7889999999999966 7899999999999877543210 00111111 1234555 37899999999999
Q ss_pred HHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHHhcccc-----chhhhHHHhhhccccCc-cCceEecCCCCHHH
Q psy744 236 HALRKFLERRVSALPMTDS-EGHLVDIFAKFDVINLAAEKTYT-----NLDVTLKEANEHKTDWF-EGVEKCLLDETLFT 308 (405)
Q Consensus 236 ~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dl~~~~~~~~~~-----~l~~~v~~~~~~~~~~~-~~~~~v~~~~~l~~ 308 (405)
++++.|.+++++++||+|+ +|+++|+||.+|+++.+...... ....++.++. .|. +++.++.+++++.+
T Consensus 139 ~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~----v~~~~~~~~v~~~~~l~~ 214 (330)
T 2v8q_E 139 DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQ----IGTYANIAMVRTTTPVYV 214 (330)
T ss_dssp HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHT----CSBCSSCCCEETTCBHHH
T ss_pred HHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhc----ccCcCCceEECCCCCHHH
Confidence 9999999999999999998 89999999999999887653211 1223444431 133 67889999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCCCcCCcccccccCCccc---c
Q psy744 309 VMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDLASSDDKVFEENEEPR---D 385 (405)
Q Consensus 309 a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 385 (405)
+++.|.+++++++||+|++|+++|+||..||++++...............+... .........+..+..+. +
T Consensus 215 ~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~v~~~~~l~~a~~ 289 (330)
T 2v8q_E 215 ALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHR-----SHYFEGVLKCYLHETLEAIIN 289 (330)
T ss_dssp HHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGC-----CSCCCSCCEECTTSBHHHHHH
T ss_pred HHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhcc-----ccccCCCeEECCCCcHHHHHH
Confidence 999999999999999998899999999999999876431110000000001000 00011222333444444 4
Q ss_pred ccccCcccccccccc
Q psy744 386 YVQNSCWGEVPVSDS 400 (405)
Q Consensus 386 ~~~~~~~~~~~~~~~ 400 (405)
.+.+.+...+||+|.
T Consensus 290 ~m~~~~~~~l~Vvd~ 304 (330)
T 2v8q_E 290 RLVEAEVHRLVVVDE 304 (330)
T ss_dssp HHHHHTCSEEEEECT
T ss_pred HHHHCCCcEEEEEcC
Confidence 556888999999983
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=162.59 Aligned_cols=126 Identities=23% Similarity=0.368 Sum_probs=106.9
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccc------------
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN------------ 278 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~------------ 278 (405)
+.+++++| .++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.........
T Consensus 17 ~~~V~diM---~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T 4esy_A 17 QVPIRDIL---TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAP 93 (170)
T ss_dssp TSBGGGGC---CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHH
T ss_pred CCCHHHhc---CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchh
Confidence 45899999 488999999999999999999999999999999999999999999986543221000
Q ss_pred ---------hhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 279 ---------LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 279 ---------l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
...++. +.|.+++++|++++++.+|+++|.+++++++||+| +|+++|+||.+||+++++.+
T Consensus 94 ~~~~~~~~~~~~~v~------~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 94 EVEHLFETGRKLTAS------AVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp HHHHHHHHHTTCBHH------HHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC
T ss_pred hHHhhhccccccchh------hhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhc
Confidence 011233 44778999999999999999999999999999998 69999999999999998743
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=171.04 Aligned_cols=181 Identities=16% Similarity=0.209 Sum_probs=139.8
Q ss_pred cccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCC----eeeeEEeHHHHHHHHHHhhCC---CCCCHHHH-
Q psy744 87 CYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQ----QYVGMLTITDFIKILQMYYTS---SSITMEEL- 158 (405)
Q Consensus 87 ~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~----~~~GilT~~Dil~~l~~~~~~---~~~~~~~l- 158 (405)
+.++| +.++++++++.++.+|++.|.+++++.+||+|++.+ +++|++|..|+++++...... ...++.++
T Consensus 116 ~~~~~--~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~ 193 (323)
T 3t4n_C 116 ALGVD--QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLN 193 (323)
T ss_dssp HTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTT
T ss_pred HhCCC--CCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcC
Confidence 44555 567899999999999999999999999999998622 399999999999987643211 11123333
Q ss_pred --hh------------ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCcccccccccccccccc--
Q psy744 159 --EE------------HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY-- 222 (405)
Q Consensus 159 --~~------------~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~-- 222 (405)
.. ..+...|.+++++++||+|++|+++|++|..|+++.+..... .....+++++|....
T Consensus 194 ~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-----~~~~~~v~~~m~~~~~~ 268 (323)
T 3t4n_C 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY-----NDLSLSVGEALMRRSDD 268 (323)
T ss_dssp CSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHH-----HHTTSBHHHHGGGSCTT
T ss_pred CCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchh-----hhccCCHHHHHhhcccc
Confidence 11 112238899999999999999999999999999998764221 122457888884210
Q ss_pred -CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 223 -ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 223 -~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.++.++.+++++.++++.|.+++++++||+|++|+++|+||..|+++++..+
T Consensus 269 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 269 FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp CCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 1789999999999999999999999999999999999999999999988654
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-19 Score=149.03 Aligned_cols=140 Identities=36% Similarity=0.639 Sum_probs=112.8
Q ss_pred ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHh
Q psy744 207 PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286 (405)
Q Consensus 207 ~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~ 286 (405)
..++++++++++..+.++++++.+++++.+|++.|.+++++++||+|++|+++|+++..|+++....+.+.....++.++
T Consensus 3 ~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~ 82 (144)
T 2nyc_A 3 THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEA 82 (144)
T ss_dssp CGGGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHH
T ss_pred cchhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHH
Confidence 44567788996544468899999999999999999999999999999889999999999999887654322335567776
Q ss_pred hhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
|........++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++..+
T Consensus 83 m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 83 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred HhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHhc
Confidence 531100012678999999999999999999999999999889999999999999999754
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=172.28 Aligned_cols=223 Identities=13% Similarity=0.182 Sum_probs=151.8
Q ss_pred HHHhcCCCEEEEEeCC-CCEEEEEeHHHHHHHHHHhhCCCCCcc----cccccc-------ccccccccCCe--eEEcCC
Q psy744 166 NLIDYKIHRLPVIDEM-GNVLYILTHKRILRFLFLYINDLPKPS----FLNKTL-------RDLKIGTYENV--ETVAEE 231 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~-~~vvgilt~~dIl~~l~~~~~~~~~~~----~~~~~v-------~~i~~~~~~~~--~~v~~~ 231 (405)
.|.+++++++||++.+ ++++|++|.+|+++++........... ....++ +++|. +++ +++.++
T Consensus 49 ~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~---~~~~~~~v~~~ 125 (334)
T 2qrd_G 49 LLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGA---IPPETIYVHPM 125 (334)
T ss_dssp HHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTC---SCSSCCCBCTT
T ss_pred HHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhcc---CCCceeeeCCC
Confidence 7889999999999965 899999999999987654321000000 001122 22342 445 899999
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCCc-----EEEEEeHHHHHHHHHhccc--cchhhhHHHhhhccccCccCceEecCCC
Q psy744 232 TSIIHALRKFLERRVSALPMTDSEGH-----LVDIFAKFDVINLAAEKTY--TNLDVTLKEANEHKTDWFEGVEKCLLDE 304 (405)
Q Consensus 232 ~~l~~a~~~m~~~~~~~lpVvd~~g~-----lvGivt~~Dl~~~~~~~~~--~~l~~~v~~~~~~~~~~~~~~~~v~~~~ 304 (405)
+++.++++.|.+++++++||+|++|. ++|++|.+|+++.+..... .....++.++ ...|.+++.++++++
T Consensus 126 ~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l---~~~m~~~~~~v~~~~ 202 (334)
T 2qrd_G 126 HSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQM---TIGTWSNLATASMET 202 (334)
T ss_dssp SBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGS---SCSBCSSCCCBCTTS
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHh---CCcccCCceEECCCC
Confidence 99999999999999999999997654 9999999999988764321 0112233332 113668899999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCCCcCCcccccccCCc--
Q psy744 305 TLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDLASSDDKVFEENEE-- 382 (405)
Q Consensus 305 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 382 (405)
++.++++.|.+++.+++||+|++|+++|+||..||++++...............+..... . . .....+..+..
T Consensus 203 ~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~---~-~-~~~~~v~~~~~l~ 277 (334)
T 2qrd_G 203 KVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA---N-F-DGVHTCRATDRLD 277 (334)
T ss_dssp BHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCT---T-C-CCCCEECTTCBHH
T ss_pred cHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcccc---c-C-CCCEEECCCCcHH
Confidence 999999999999999999999889999999999999988642210000000000110000 0 0 11223333444
Q ss_pred -cccccccCccccccccc
Q psy744 383 -PRDYVQNSCWGEVPVSD 399 (405)
Q Consensus 383 -~~~~~~~~~~~~~~~~~ 399 (405)
..+.+.+.+.+.+||+|
T Consensus 278 ~~~~~m~~~~~~~l~Vvd 295 (334)
T 2qrd_G 278 GIFDAIKHSRVHRLFVVD 295 (334)
T ss_dssp HHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEC
Confidence 44455688999999998
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=154.66 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=107.0
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
...++++|+.. .+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++++.......... ..-..+.
T Consensus 14 ~~~~~~iM~P~-~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~---~~~~~v~ 89 (156)
T 3k6e_A 14 LGQEETFLTPA-KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEI---MADTDIV 89 (156)
T ss_dssp HTTGGGGEEET-TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHH---HTTSBGG
T ss_pred hccHHHhCcch-hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccccccc---ccccCHH
Confidence 45788888643 6899999999999999999999999999999999999999999999887654322110 0111233
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
+.|.+++.++++++++.+|++.|.++++ +||||++|+++|+||.+||++++...
T Consensus 90 ~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~ 143 (156)
T 3k6e_A 90 HMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp GTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred HhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHH
Confidence 4577899999999999999999988764 99999999999999999999999653
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=149.61 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=109.3
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEAN 287 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~ 287 (405)
+...+++++|... .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++...... ..++.+
T Consensus 20 l~~~~v~diM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~-- 92 (148)
T 3lv9_A 20 FEEKKIREIMVPR-TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEE-- 92 (148)
T ss_dssp GGTCBGGGTSEET-TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGG--
T ss_pred cCCCCHHHccccH-HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHH--
Confidence 3456899999411 289999999999999999999999999999987 89999999999998876542 233333
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
.| +++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++..+
T Consensus 93 ----~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 93 ----IL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp ----TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred ----hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence 36 7889999999999999999999999999999889999999999999999854
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=146.99 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=107.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++....+. ...++.++
T Consensus 5 ~~~v~~iM~~~-~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~---~~~~v~~~--- 77 (130)
T 3i8n_A 5 DVPVTQVMTPR-PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS---GQKQLGAV--- 77 (130)
T ss_dssp --CCTTTSCCB-CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT---TTSBHHHH---
T ss_pred cCCHhhCCCcH-HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC---CcCCHHHH---
Confidence 55888998422 457799999999999999999999999999987 89999999999999876542 24566666
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++.+
T Consensus 78 ---m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 78 ---M-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp ---S-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred ---h-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence 4 457899999999999999999999999999989999999999999999874
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=144.98 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=106.4
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS-EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKT 291 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~ 291 (405)
+++++|... ++++++.+++++.+|++.|.+++++++||+++ +|+++|++|.+|++++...+.. ....++.++
T Consensus 3 ~v~~iM~~~-~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~-~~~~~v~~~----- 75 (130)
T 3hf7_A 3 SVNDIMVPR-NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE-FTKEIMLRA----- 75 (130)
T ss_dssp BHHHHSEEG-GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC-CCHHHHHHH-----
T ss_pred CHHHhCccH-HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc-cchhhHHHh-----
Confidence 577788421 47899999999999999999999999999975 5899999999999998765421 113456665
Q ss_pred cCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 292 DWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 292 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++.+
T Consensus 76 -m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 76 -A-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp -S-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred -c-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence 4 578899999999999999999999999999989999999999999999984
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=150.32 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=108.3
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|++++...+. ..++.+
T Consensus 41 ~~~v~diM~~~-~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~---- 111 (172)
T 3lhh_A 41 ERTISSLMVPR-SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE----RLELVD---- 111 (172)
T ss_dssp --CTTTTSEEG-GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC----CCCGGG----
T ss_pred CCCHHHhCccH-HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC----cccHHH----
Confidence 55889998421 578999999999999999999999999999987 99999999999999876542 233444
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
.| +++.++.+++++.++++.|.+++++.+||+|++|+++|+||..||++++..+.
T Consensus 112 --im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~ 166 (172)
T 3lhh_A 112 --LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF 166 (172)
T ss_dssp --GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTC
T ss_pred --Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCC
Confidence 36 78899999999999999999999999999998899999999999999998644
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=145.39 Aligned_cols=123 Identities=17% Similarity=0.281 Sum_probs=104.6
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
.+++++|... .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.+.... ...++.++
T Consensus 3 ~~v~diM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~---~~~~v~~~---- 74 (127)
T 3nqr_A 3 QRVRDIMIPR-SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA---EAFSMDKV---- 74 (127)
T ss_dssp CBHHHHSEEG-GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC---CCCCHHHH----
T ss_pred cCHHHhcccH-HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC---CCCCHHHH----
Confidence 4678888421 458899999999999999999999999999987 89999999999988765431 24566776
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
| .++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus 75 --m-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 75 --L-RTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp --C-BCCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred --c-CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 3 346799999999999999999999999999999999999999999999863
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-19 Score=155.37 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=121.2
Q ss_pred ccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC
Q psy744 71 KDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150 (405)
Q Consensus 71 ~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~ 150 (405)
+++..+++.+.++..++.|+| +++++++++++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+....
T Consensus 4 e~~~~~~~~~~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~-- 78 (170)
T 4esy_A 4 EQARRRAIARAIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFW-- 78 (170)
T ss_dssp HHHHHHHHHHHHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTT--
T ss_pred HHHHHHHHHHHHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhcc--
Confidence 455678888999999999999 7789999999999999999999999999999987 99999999999985432110
Q ss_pred CCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC
Q psy744 151 SSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE 230 (405)
Q Consensus 151 ~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~ 230 (405)
...... +..... ..... ..+... ....+++++| .++++++.+
T Consensus 79 ----~~~~~~------~~~~~~----------------~~~~~-~~~~~~--------~~~~~v~~im---~~~~~tv~~ 120 (170)
T 4esy_A 79 ----IYEASE------ILSRAI----------------PAPEV-EHLFET--------GRKLTASAVM---TQPVVTAAP 120 (170)
T ss_dssp ----HHHHHH------HHTTTS----------------CHHHH-HHHHHH--------HTTCBHHHHC---BCCSCCBCT
T ss_pred ----ccchhh------hhhhcc----------------chhhH-Hhhhcc--------ccccchhhhc---ccCcccCCc
Confidence 000000 000000 00000 111111 1244788888 488999999
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 231 ETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 231 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++++.+|+++|.+++++++||+| +|+++|+||..||++++...
T Consensus 121 ~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 121 EDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp TSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC
T ss_pred chhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhc
Confidence 99999999999999999999998 69999999999999876543
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=144.91 Aligned_cols=123 Identities=15% Similarity=0.274 Sum_probs=104.6
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|++++.... ..++.++
T Consensus 4 ~~~v~diM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~-----~~~v~~~--- 74 (129)
T 3jtf_A 4 ERTVADIMVPR-SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP-----ALDIRSL--- 74 (129)
T ss_dssp CCBHHHHCEEG-GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT-----TSCGGGG---
T ss_pred CCCHHHhCccH-HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC-----CcCHHHH---
Confidence 45788888421 577899999999999999999999999999985 8999999999998765422 2334444
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
| +++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+||++++.++
T Consensus 75 ---m-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 75 ---V-RPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp ---C-BCCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred ---h-CCCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 4 4578999999999999999999999999999889999999999999999854
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=141.85 Aligned_cols=119 Identities=23% Similarity=0.341 Sum_probs=105.1
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
+++++|. +++.++.+++++.++++.|.+++++++||+|++|+++|+|+..|+++.+.... .++.++
T Consensus 2 ~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~-----~~v~~~------ 67 (122)
T 3kpb_A 2 LVKDILS---KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK-----KTIEEI------ 67 (122)
T ss_dssp BHHHHCC---SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTC-----CBGGGT------
T ss_pred chHHhhC---CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcc-----cCHHHH------
Confidence 5677773 78899999999999999999999999999999999999999999998876542 134443
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus 68 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 68 MTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred hcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 66788999999999999999999999999999988999999999999999863
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=145.96 Aligned_cols=125 Identities=14% Similarity=0.212 Sum_probs=104.3
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
.+++++|... ++++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++++.... ....++.++
T Consensus 3 ~~v~~iM~~~-~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~--~~~~~v~~~---- 75 (136)
T 3lfr_A 3 LQVRDIMVPR-SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD--GDSDDVKKL---- 75 (136)
T ss_dssp CBHHHHSEEG-GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS--GGGCCGGGT----
T ss_pred CChHhccccH-HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc--CCCcCHHHH----
Confidence 4678888421 578999999999999999999999999999987 89999999999998765321 123344444
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
| .++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||++++..+
T Consensus 76 --m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 76 --L-RPATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp --C-BCCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC---
T ss_pred --c-CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 4 3488999999999999999999999999999899999999999999998753
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=146.86 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=107.1
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE-CC-CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT-DS-EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~-~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
..+++++|... .+++++.+++++.+|++.|.+++++++||+ |+ +|+++|+||.+|+++.+.... ..++.+
T Consensus 19 ~~~v~~iM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~~v~~--- 90 (153)
T 3oco_A 19 DKVASDVMVDR-TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KAKIST--- 90 (153)
T ss_dssp HCBHHHHSEEG-GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TSBGGG---
T ss_pred CCEeeeEecch-hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CCcHHH---
Confidence 45889999411 378999999999999999999999999999 65 489999999999998876542 233343
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
.| +++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++++..+.
T Consensus 91 ---~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~ 145 (153)
T 3oco_A 91 ---IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNL 145 (153)
T ss_dssp ---TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC--
T ss_pred ---Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccC
Confidence 36 78999999999999999999999999999998899999999999999998643
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-18 Score=146.62 Aligned_cols=134 Identities=20% Similarity=0.282 Sum_probs=112.3
Q ss_pred ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHh
Q psy744 207 PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286 (405)
Q Consensus 207 ~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~ 286 (405)
..+...+++++|....++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+..........++.++
T Consensus 19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~ 98 (165)
T 3fhm_A 19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVA 98 (165)
T ss_dssp CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGT
T ss_pred HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHH
Confidence 34456688998841113689999999999999999999999999999999999999999999887765322234445554
Q ss_pred hhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++.++.+++++.++++.|.+++++++||+|+ |+++|+||..||++++....
T Consensus 99 ------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~ 152 (165)
T 3fhm_A 99 ------MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEI 152 (165)
T ss_dssp ------SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC-
T ss_pred ------hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHH
Confidence 6678899999999999999999999999999997 99999999999999997543
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-18 Score=141.29 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=105.7
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCC--cEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEG--HLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
..+++++|. +++.++.+++++.+|++.|.+++++++||+|++| +++|+||.+|+++.+..+. ..+.++.++
T Consensus 4 ~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~--~~~~~v~~~-- 76 (141)
T 2rih_A 4 AIRTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL--DLDGPAMPI-- 76 (141)
T ss_dssp -CBGGGGCC---SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC--CTTSBSGGG--
T ss_pred ceEHHHHhc---CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCC--CCCCCHHHH--
Confidence 457888884 7899999999999999999999999999999888 9999999999998876542 123344444
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.+++.+++++ ++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus 77 ----m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 77 ----ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA 127 (141)
T ss_dssp ----CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred ----cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 66789999999 9999999999999999999998899999999999987665
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=144.09 Aligned_cols=124 Identities=15% Similarity=0.314 Sum_probs=106.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
..+++++|. + ++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++...... .....++.++
T Consensus 16 ~~~v~~im~---~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~~---- 86 (159)
T 3fv6_A 16 KLQVKDFQS---I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-ELTSVPVHII---- 86 (159)
T ss_dssp TCBGGGSCB---C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS-CTTTCBGGGT----
T ss_pred hCCHHHHcC---C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC-cccCcCHHHH----
Confidence 458889883 4 569999999999999999999999999998999999999999998774431 1223455554
Q ss_pred ccCcc--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC---cEEEEEeHHHHHHHHHh
Q psy744 291 TDWFE--GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD---HVLGVLSLSDILVYLVL 345 (405)
Q Consensus 291 ~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---~lvGiIt~~DIl~~l~~ 345 (405)
|.+ ++.++++++++.+|++.|.+++++++||+|++| +++|+||..||++++..
T Consensus 87 --m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 87 --MTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp --SEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred --HcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence 556 788999999999999999999999999999888 99999999999999985
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=138.65 Aligned_cols=125 Identities=14% Similarity=0.234 Sum_probs=108.3
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
..+++++|. +++.++.+++++.+|++.|.+++++++||+| +|+++|+++..|+++....+. ....++.++
T Consensus 3 ~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~--~~~~~v~~~---- 72 (133)
T 2ef7_A 3 EEIVKEYMK---TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGK--SLETKAEEF---- 72 (133)
T ss_dssp CCBGGGTSB---CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC--CTTCBGGGT----
T ss_pred cccHHHhcc---CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCC--CcccCHHHH----
Confidence 347888883 6789999999999999999999999999999 899999999999998776542 123344444
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++....
T Consensus 73 --~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~ 127 (133)
T 2ef7_A 73 --MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF 127 (133)
T ss_dssp --SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC
T ss_pred --cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHH
Confidence 5578899999999999999999999999999998899999999999999987543
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=139.27 Aligned_cols=124 Identities=24% Similarity=0.444 Sum_probs=107.9
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHH-HHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV-INLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl-~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++| .+++.++.+++++.++++.|.+++.+++||+|++|+++|+++..|+ ++.+..+. ....++.++
T Consensus 7 ~~~v~~im---~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--~~~~~v~~~--- 78 (138)
T 2p9m_A 7 NIKVKDVM---TKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY--TLETTIGDV--- 78 (138)
T ss_dssp TCBGGGTS---BCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCC--CSSCBHHHH---
T ss_pred cCCHHHhh---cCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcc--cCCcCHHHH---
Confidence 55788888 3688999999999999999999999999999988999999999999 87665432 224566666
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAE-----VHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|.+++.++++++++.++++.|.+++ .+++||+|++|+++|+||..||++++..
T Consensus 79 ---m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 79 ---MTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp ---SCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred ---hCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 5578899999999999999999999 9999999988999999999999998864
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=138.63 Aligned_cols=125 Identities=18% Similarity=0.336 Sum_probs=106.9
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH-HHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL-AAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~-~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|. +++.++.+++++.+|++.|.+++++++||+|++|+++|+|+..|+++. ...+. ....++.++
T Consensus 6 ~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--~~~~~v~~~--- 77 (138)
T 2yzi_A 6 KAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL--PYDIPVERI--- 77 (138)
T ss_dssp TSBGGGTCB---CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC--CTTSBGGGT---
T ss_pred hhhHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC--cccCCHHHH---
Confidence 457888884 789999999999999999999999999999988999999999999743 33321 123344444
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++.++++++++.++++.|.+++++++ |+|++|+++|+||..||++++....
T Consensus 78 ---m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~ 131 (138)
T 2yzi_A 78 ---MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRL 131 (138)
T ss_dssp ---CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred ---hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHH
Confidence 66789999999999999999999999999 9998899999999999999998543
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=136.34 Aligned_cols=121 Identities=26% Similarity=0.363 Sum_probs=105.1
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
+++++| .+++.++.+++++.+|++.|.+++.+++||+| +|+++|+++..|+++....+. .....++.++
T Consensus 2 ~v~~~m---~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~-~~~~~~v~~~------ 70 (125)
T 1pbj_A 2 RVEDVM---VTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD-DLAEVKVWEV------ 70 (125)
T ss_dssp CHHHHC---BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-CTTTSBHHHH------
T ss_pred CHHHhc---CCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC-cccccCHHHH------
Confidence 456777 36889999999999999999999999999999 899999999999998776542 1234567776
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|.+++.++.+++++.++++.|.+++.+++||+|+ |+++|+||..||++++..
T Consensus 71 m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 71 MERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA 122 (125)
T ss_dssp CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 5578899999999999999999999999999997 999999999999999863
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=145.31 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=107.1
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|... ++++++.+++++.+|++.|.+++++++||+|++ |+++|+|+.+|++++..... ..++.
T Consensus 35 ~~~v~diM~~~-~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~----~~~v~----- 104 (173)
T 3ocm_A 35 ERSIRSIMTPR-TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG----RVRRN----- 104 (173)
T ss_dssp TSCSTTTSEEG-GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----SCCGG-----
T ss_pred CCCHHHhCCcH-HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC----cchhH-----
Confidence 45889999421 568999999999999999999999999999976 89999999999998876442 12222
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..||++++..+.
T Consensus 105 ---~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i 159 (173)
T 3ocm_A 105 ---RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF 159 (173)
T ss_dssp ---GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred ---hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence 3367889999999999999999999999999998999999999999999998644
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=142.00 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=106.4
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
..+++++|. +++.++.+++++.+|++.|.+++++++||+|+ |+++|+||.+|+++...++.. ...++.+
T Consensus 4 s~~v~~~m~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~--~~~~v~~----- 72 (128)
T 3gby_A 4 SVTFSYLAE---TDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPT--VKEKLGE----- 72 (128)
T ss_dssp TCBGGGGCB---CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCC--TTCBCCG-----
T ss_pred ceEHHHhhc---CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCc--ccCcHHH-----
Confidence 447888884 78999999999999999999999999999998 999999999999987654321 1123333
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
.|.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus 73 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 73 -ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp -GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred -HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 366788999999999999999999999999999989999999999999999863
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=138.92 Aligned_cols=126 Identities=24% Similarity=0.290 Sum_probs=104.7
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
+++++|....+++.++.+++++.+|++.|.+++++++||+| +|+++|+|+..|+++............++.++
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~------ 79 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEI------ 79 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGT------
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHh------
Confidence 67777721116889999999999999999999999999999 89999999999998754433222223444444
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
|.+++.++++++++.++++.|.+++.+++||+| +|+++|+||..||++++..+
T Consensus 80 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 80 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred ccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence 667889999999999999999999999999999 79999999999999998743
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=146.81 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=108.8
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
+..+++++|. ++++++.+++++.+|++.|.+++++++||+|++|+++|+++.+|+++.+..........++.++
T Consensus 7 ~~~~v~~im~---~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~i--- 80 (184)
T 1pvm_A 7 MFMRVEKIMN---SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLV--- 80 (184)
T ss_dssp CCCBGGGTSB---TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGT---
T ss_pred cccCHHHhcC---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHH---
Confidence 4568899984 7899999999999999999999999999999889999999999999876542111223344444
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus 81 ---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 81 ---MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp ---SBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred ---hCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 66788999999999999999999999999999988999999999999987754
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=140.27 Aligned_cols=129 Identities=15% Similarity=0.226 Sum_probs=111.2
Q ss_pred ccccccccccc---CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 212 KTLRDLKIGTY---ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 212 ~~v~~i~~~~~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
.+++++|.... +++.++.+++++.+|++.|.+++++++||++ +|+++|+|+..|+++.+..........++.++
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~-- 83 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEI-- 83 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH--
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHH--
Confidence 46888885332 5679999999999999999999999999966 79999999999999887665433345677776
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPS 348 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~ 348 (405)
|.+++.++.+++++.++++.|.+++++++||+| +|+++|+||..||++++.....
T Consensus 84 ----m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~ 138 (157)
T 4fry_A 84 ----MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQ 138 (157)
T ss_dssp ----SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC
T ss_pred ----cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHH
Confidence 557889999999999999999999999999999 7999999999999999986553
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=141.50 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=107.7
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc----chhhhHHH
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT----NLDVTLKE 285 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~----~l~~~v~~ 285 (405)
...+++++|... ++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+...... ....++.+
T Consensus 13 ~~~~v~~im~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~ 91 (150)
T 3lqn_A 13 QQIFVKDLMISS-EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ 91 (150)
T ss_dssp HHCBHHHHSEEG-GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG
T ss_pred hcCChhhcccCC-CceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH
Confidence 356888988421 4689999999999999999999999999999999999999999999887532111 11233333
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
.|.+++.++.+++++.++++.|.++++ +||+|++|+++|+||..||++++....
T Consensus 92 ------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~ 145 (150)
T 3lqn_A 92 ------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKV 145 (150)
T ss_dssp ------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred ------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHh
Confidence 466889999999999999999999987 999998999999999999999998543
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-18 Score=139.89 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=105.3
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH-HHHhccccchhhhHHHhhhcc
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN-LAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~-~~~~~~~~~l~~~v~~~~~~~ 290 (405)
.+++++|. +++.++.+++++.++++.|.+++++++||+|++|+++|+|+..|+++ .+..+. .....++.++|
T Consensus 8 ~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~~v~~~m--- 80 (133)
T 1y5h_A 8 TTARDIMN---AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL-DPNTATAGELA--- 80 (133)
T ss_dssp CCHHHHSE---ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC-CTTTSBHHHHH---
T ss_pred cCHHHHhc---CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC-CccccCHHHHh---
Confidence 47788884 68899999999999999999999999999998899999999999984 444331 12345677764
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
.+++.++++++++.++++.|.+++.+++||+|+ |+++|+||..||++++.
T Consensus 81 ---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 81 ---RDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLP 130 (133)
T ss_dssp ---TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred ---cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 468889999999999999999999999999996 99999999999999875
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=141.28 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=106.8
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc-------cchhhhHH
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY-------TNLDVTLK 284 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~-------~~l~~~v~ 284 (405)
.+++++|. ++++++.+++++.+|++.|.+.+++++||+|++|+++|+|+..|+++....... .....++.
T Consensus 5 ~~v~dim~---~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~ 81 (160)
T 2o16_A 5 IKVEDMMT---RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF 81 (160)
T ss_dssp CBGGGTSE---ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred CcHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHH
Confidence 47888883 688999999999999999999999999999988999999999999987654210 11234566
Q ss_pred HhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 285 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
++ |.+++.++++++++.+|++.|.+++++.+||+|+ |+++|+||..||++++..
T Consensus 82 ~i------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 82 EV------MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp HH------SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred HH------hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 65 5578899999999999999999999999999996 999999999999998774
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=140.48 Aligned_cols=119 Identities=16% Similarity=0.276 Sum_probs=105.1
Q ss_pred cccccccccccC--CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 212 KTLRDLKIGTYE--NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 212 ~~v~~i~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
.+++++|. + +++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+..+. .....++.++
T Consensus 28 ~~v~dim~---~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~~--- 100 (149)
T 3k2v_A 28 LRVNDIMH---TGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV-DMRDASIADV--- 100 (149)
T ss_dssp SBGGGTSB---CGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS-CCTTCBHHHH---
T ss_pred cCHHHHhc---CCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC-CcccCcHHHH---
Confidence 48899994 5 7899999999999999999999999999999999999999999998876542 2245667776
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
|.+++.++++++++.++++.|.+++++++||+|++ +++|+||..||++
T Consensus 101 ---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 101 ---MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp ---SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred ---cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 55788999999999999999999999999999954 9999999999975
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=141.22 Aligned_cols=128 Identities=17% Similarity=0.291 Sum_probs=105.0
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc------------ccch
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT------------YTNL 279 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~------------~~~l 279 (405)
.+++++|... .+++++.+++++.+|++.|.+++++++||+|++|+++|+|+..|+++...... ....
T Consensus 5 ~~v~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 83 (152)
T 4gqw_A 5 YTVGEFMTKK-EDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTN 83 (152)
T ss_dssp SBGGGTSEES-TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----
T ss_pred EEhhhccCCC-CCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhc
Confidence 4788888421 27899999999999999999999999999999899999999999986432110 0112
Q ss_pred hhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 280 DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 280 ~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
..++.++ |.+++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++...
T Consensus 84 ~~~v~~~------m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 84 GKLVGDL------MTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp CCBHHHH------SEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred cccHHHh------cCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 3355555 557788999999999999999999999999999899999999999999999854
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-18 Score=158.21 Aligned_cols=213 Identities=15% Similarity=0.219 Sum_probs=138.2
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCC-----CCCHHHH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSS-----SITMEEL 158 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~-----~~~~~~l 158 (405)
..++.|+| +.+++++.++.++.+|++.|.+++++.+||+|++ ++++|++|..|+++.+....... ..+..++
T Consensus 6 ~~~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v 82 (245)
T 3l2b_A 6 KLKVEDLE--MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDNI 82 (245)
T ss_dssp CCBGGGSC--CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred cCcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence 45788999 6679999999999999999999999999999987 89999999999998876432111 1112221
Q ss_pred hhccHHHHHHhcCCCEEEEEeC-----CCC-EEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCC
Q psy744 159 EEHKLETNLIDYKIHRLPVIDE-----MGN-VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEET 232 (405)
Q Consensus 159 ~~~~i~~~l~~~~i~~lpVvd~-----~~~-vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 232 (405)
.. . .+ ..+..-.. .|+ ++|-.+ ...+.+.+. ...++.+ .+
T Consensus 83 ~~-----~---l~-~~~l~~~~~~~~~~g~~~i~a~~---------------------~~~~~~~~~--~~~ivIv-gd- 128 (245)
T 3l2b_A 83 LD-----T---LS-AEAQNINEERKVFPGKVVVAAMQ---------------------AESLKEFIS--EGDIAIA-GD- 128 (245)
T ss_dssp HH-----H---TT-CEEEECCTTCCCCCSCEEECCSC---------------------GGGGGGTCC--TTCEEEE-CS-
T ss_pred HH-----H---hC-CEEEeccCCcceeeeeEEEEeCC---------------------hHHHHhcCC--CCCEEEE-CC-
Confidence 11 0 00 01100000 000 011111 112222221 1334444 33
Q ss_pred CHHHHHHHHHhcCCCEEEEECCC------------CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCc-cCceE
Q psy744 233 SIIHALRKFLERRVSALPMTDSE------------GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWF-EGVEK 299 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~------------g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~-~~~~~ 299 (405)
-.++...+.+.+.+++++++.. +.+..+.+..|........ ....+++++ |. +++.+
T Consensus 129 -r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~---~~~~~v~~i------m~~~~~~~ 198 (245)
T 3l2b_A 129 -RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLI---VQSLPVDYV------MTKDNLVA 198 (245)
T ss_dssp -CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHHTCEEEECSSCHHHHHHHG---GGGSBHHHH------SBCTTCCC
T ss_pred -CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHcCCeEEEeCCChHHHHHHH---hcCCceeeE------ecCCccEE
Confidence 3688888999999999888642 2345566666655443322 123445555 66 78999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 300 CLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 300 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
+++++++.++++.|.+++++++||+|++|+++|+||.+||+++.
T Consensus 199 ~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 199 VSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH 242 (245)
T ss_dssp EETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred ECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence 99999999999999999999999999899999999999999865
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=142.77 Aligned_cols=136 Identities=17% Similarity=0.262 Sum_probs=112.0
Q ss_pred HHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHH
Q psy744 77 IFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITME 156 (405)
Q Consensus 77 ~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~ 156 (405)
.+.+|+ ..+..++|....++++++++.|+.+|+++|.+++++++||+|++ ++++|++|..|+++++...... .
T Consensus 8 ~~e~~l-~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~----~- 80 (156)
T 3k6e_A 8 EFETFL-LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLS----Q- 80 (156)
T ss_dssp HHHHHH-HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCC----H-
T ss_pred HHHHHh-hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccc----c-
Confidence 355565 45678899878899999999999999999999999999999987 8999999999999776543100 0
Q ss_pred HHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHH
Q psy744 157 ELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIH 236 (405)
Q Consensus 157 ~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~ 236 (405)
......+++++| .+++.++.+++++.+
T Consensus 81 --------------------------------------------------~~~~~~~v~~im---~~~~~~v~~~~~l~~ 107 (156)
T 3k6e_A 81 --------------------------------------------------EIMADTDIVHMT---KTDVAVVSPDFTITE 107 (156)
T ss_dssp --------------------------------------------------HHHTTSBGGGTC---BCSCCCBCTTCCHHH
T ss_pred --------------------------------------------------ccccccCHHHhh---cCCceecccccHHHH
Confidence 011244788888 488999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 237 ALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 237 a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|++.|.+++ .+||+|++|+++|+||.+|+++++...
T Consensus 108 ~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~ 143 (156)
T 3k6e_A 108 VLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp HHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHH
Confidence 999998765 499999999999999999999988653
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-17 Score=138.61 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=109.0
Q ss_pred cccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCE-EEEECCCCcEEEEEeHHHHHHHHHhc------------
Q psy744 208 SFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSA-LPMTDSEGHLVDIFAKFDVINLAAEK------------ 274 (405)
Q Consensus 208 ~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~g~lvGivt~~Dl~~~~~~~------------ 274 (405)
.+...+++++| .++++++.+++++.+|++.|.+++++. +||+|++ +++|+||..|+++.....
T Consensus 12 ~~~~~~v~~im---~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~ 87 (157)
T 1o50_A 12 HMKVKDVCKLI---SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIR 87 (157)
T ss_dssp TCBHHHHTTSS---CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred hhccccHhhcc---cCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHH
Confidence 44466888998 478999999999999999999999999 9999987 999999999999875421
Q ss_pred --cccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 275 --TYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 275 --~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
.......++.++ |.+ +.++++++++.+|++.|.+++++++||+|++|+++|+||..||++++...
T Consensus 88 ~~~~~~~~~~v~~i------m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 88 SSMKRLIAKNASEI------MLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp -CCCCCSSCBHHHH------CBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred HHHHHHcCCcHHHH------cCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence 001224456665 556 88999999999999999999999999999889999999999999999754
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=145.24 Aligned_cols=127 Identities=20% Similarity=0.324 Sum_probs=104.3
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc---------------c-
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT---------------Y- 276 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~---------------~- 276 (405)
+++++|... .+++++.+++++.+|++.|.+++++++||+|++|+++|+|+..|+++...... +
T Consensus 5 ~v~dim~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (180)
T 3sl7_A 5 TVGDFMTPR-QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK 83 (180)
T ss_dssp BHHHHSEEG-GGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCC
T ss_pred eHHHhcCCC-CCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhh
Confidence 677788411 27899999999999999999999999999999999999999999985321100 0
Q ss_pred ----------cchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 277 ----------TNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 277 ----------~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
.....++.++ |.+++.++.+++++.+|++.|.+++++++||+|++|+++|+||..||++++...
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 84 TFNELQKLISKTYGKVVGDL------MTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp SHHHHHHHHHTTTTCBHHHH------SEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred hhHHHHHHHhccccccHHHH------hCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 0113345554 567889999999999999999999999999999899999999999999999853
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=141.32 Aligned_cols=118 Identities=17% Similarity=0.252 Sum_probs=102.3
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCC-cEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEG-HLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|+++ +++|+||.+|++++...+ ...++.++|
T Consensus 37 ~~~v~diM~~~-~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~----~~~~v~~im-- 109 (156)
T 3oi8_A 37 DLEVRDAMITR-SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP----EQFHLKSIL-- 109 (156)
T ss_dssp TCBGGGTCEEG-GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG----GGCCHHHHC--
T ss_pred CCCHhheeeeH-HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC----CcccHHHHc--
Confidence 45889999421 3789999999999999999999999999999874 999999999998765432 245677764
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl 340 (405)
.++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..||+
T Consensus 110 -----~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 110 -----RPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp -----BCCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred -----CCCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 3478999999999999999999999999999999999999999986
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-17 Score=137.59 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=107.2
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc----cchhhhHHH
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY----TNLDVTLKE 285 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~----~~l~~~v~~ 285 (405)
...+++++|... ++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++....... .....++.+
T Consensus 9 ~~~~v~~im~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~ 87 (157)
T 2emq_A 9 MQMTVKPFLIPA-DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE 87 (157)
T ss_dssp -CCBSTTTCEEG-GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG
T ss_pred hhCcHHhhccCC-ccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH
Confidence 355888888410 278899999999999999999999999999988999999999999987654210 011223333
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPS 348 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~ 348 (405)
.|.+++.++++++++.++++.|.++++ +||+|++|+++|+||..||++++.....
T Consensus 88 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 88 ------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp ------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred ------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence 466889999999999999999999987 9999988999999999999999986554
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-17 Score=144.20 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=106.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhc---CCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhh
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLER---RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEAN 287 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~---~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~ 287 (405)
..+++++| .++++++.++.++.+|++.|.+. +++.+||+|++|+++|+||.+|++... ...++.++
T Consensus 53 ~~~v~~iM---~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~-------~~~~v~~i- 121 (205)
T 3kxr_A 53 ENEIGRYT---DHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE-------PHEPLISL- 121 (205)
T ss_dssp TTCGGGGC---BCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC-------TTSBGGGG-
T ss_pred cchHHhhc---cCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC-------CcchHHHH-
Confidence 45889999 47899999999999999999987 789999999999999999999997531 13344444
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++.++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..+.
T Consensus 122 -----m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~ 176 (205)
T 3kxr_A 122 -----LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY 176 (205)
T ss_dssp -----CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred -----hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence 6688999999999999999999999999999999999999999999999998543
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-17 Score=138.29 Aligned_cols=129 Identities=15% Similarity=0.220 Sum_probs=108.2
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc----cchhhhHHH
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY----TNLDVTLKE 285 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~----~~l~~~v~~ 285 (405)
...+++++|... .+++++.+++++.+|++.|.+++++++||+|++|+++|+||..|++........ .....++.+
T Consensus 12 ~~~~v~~im~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~ 90 (159)
T 1yav_A 12 LEATVGQFMIEA-DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE 90 (159)
T ss_dssp TTCBHHHHSEEG-GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred hHhhHHHHhCCc-cceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH
Confidence 356888888410 278999999999999999999999999999988999999999999987754210 012445666
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
+ |.+++.++.+++++.++++.|.++++ +||+|++|+++|+||..||++++....
T Consensus 91 ~------m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~ 144 (159)
T 1yav_A 91 V------MLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHI 144 (159)
T ss_dssp H------SBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred h------cCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHH
Confidence 5 55788999999999999999999877 999998899999999999999998644
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=133.04 Aligned_cols=127 Identities=14% Similarity=0.201 Sum_probs=109.5
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
+...++.|+|....++++++++.++.+|++.|.++++..+||+|++.++++|++|..|++..+....
T Consensus 20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~------------- 86 (148)
T 3lv9_A 20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN------------- 86 (148)
T ss_dssp GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------------
T ss_pred cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------------
Confidence 4577999999554589999999999999999999999999999986468999999999986654320
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
..+++++| +++.++.+++++.++++.|
T Consensus 87 -------------------------------------------------~~~v~~~m----~~~~~v~~~~~l~~~~~~m 113 (148)
T 3lv9_A 87 -------------------------------------------------KIELEEIL----RDIIYISENLTIDKALERI 113 (148)
T ss_dssp -------------------------------------------------CCCGGGTC----BCCEEEETTSBHHHHHHHH
T ss_pred -------------------------------------------------CccHHHhc----CCCeEECCCCCHHHHHHHH
Confidence 22566777 5789999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus 114 ~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 114 RKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp HHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred HhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence 999999999999999999999999999987653
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=144.72 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=105.4
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccc
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKT 291 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~ 291 (405)
.+++++| .++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+.+... +.++.+
T Consensus 13 ~~~~~~~---~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~-------~~~v~~------ 76 (213)
T 1vr9_A 13 MKVKKWV---TQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL-------DSSVFN------ 76 (213)
T ss_dssp CBGGGGC---BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT-------TSBSGG------
T ss_pred cCHHHhh---cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC-------CCcHHH------
Confidence 4667777 488999999999999999999999999999998899999999999976432 223333
Q ss_pred cCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCCCcC
Q psy744 292 DWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDLAS 371 (405)
Q Consensus 292 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (405)
.|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++.+........ ....+.......+
T Consensus 77 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~~~~~---~~~~l~~~~~~~~---- 149 (213)
T 1vr9_A 77 KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAMDV---PGIRFSVLLEDKP---- 149 (213)
T ss_dssp GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC-----------------------
T ss_pred HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHhcCCC---CcEEEEEEeCCCC----
Confidence 366789999999999999999999999999999988999999999999999875442111 0111111000000
Q ss_pred CcccccccCCccccccccCccccccccc
Q psy744 372 SDDKVFEENEEPRDYVQNSCWGEVPVSD 399 (405)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (405)
..-.++.+++.+.+.+.+||.+
T Consensus 150 ------~~l~~~~~~l~~~~~~~l~V~~ 171 (213)
T 1vr9_A 150 ------GELRKVVDALALSNINILSVIT 171 (213)
T ss_dssp ----------------------------
T ss_pred ------ccHHHHHHHHHHCCCcEEEEEE
Confidence 0134666778888888888875
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=132.50 Aligned_cols=127 Identities=9% Similarity=0.146 Sum_probs=106.2
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
|...++.|+|....++++++++.++.+|++.|.++++..+||+|++.++++|++|..|+++.+....
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------------- 69 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------------- 69 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT-------------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC-------------
Confidence 5678899999666778899999999999999999999999999975579999999999996654210
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
...+++++| +++.++.+++++.++++.|
T Consensus 70 ------------------------------------------------~~~~v~~~m----~~~~~v~~~~~l~~~~~~m 97 (130)
T 3i8n_A 70 ------------------------------------------------GQKQLGAVM----RPIQVVLNNTALPKVFDQM 97 (130)
T ss_dssp ------------------------------------------------TTSBHHHHS----EECCEEETTSCHHHHHHHH
T ss_pred ------------------------------------------------CcCCHHHHh----cCCcCcCCCCcHHHHHHHH
Confidence 023566666 3578999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus 98 ~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 98 MTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp HHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred HHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence 99999999999999999999999999987653
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-17 Score=134.07 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=105.5
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
.++.|+|....++++++++.++.+|++.|.++++.++||++++.++++|++|..|+++.+....
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~---------------- 65 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK---------------- 65 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSS----------------
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccC----------------
Confidence 4678888555679999999999999999999999999999764489999999999996653210
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
.+...+++++| +++.++.+++++.++++.|.++
T Consensus 66 -------------------------------------------~~~~~~v~~~m----~~~~~v~~~~~l~~~~~~m~~~ 98 (130)
T 3hf7_A 66 -------------------------------------------EFTKEIMLRAA----DEIYFVPEGTPLSTQLVKFQRN 98 (130)
T ss_dssp -------------------------------------------CCCHHHHHHHS----BCCCEEETTCBHHHHHHHHHHH
T ss_pred -------------------------------------------ccchhhHHHhc----cCCeEeCCCCcHHHHHHHHHhc
Confidence 00122456666 5678999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+.+.+||+|++|+++|+||..|+++.+.+.
T Consensus 99 ~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 99 KKKVGLVVDEYGDIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp CCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred CCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence 999999999999999999999999987643
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=134.28 Aligned_cols=131 Identities=12% Similarity=0.155 Sum_probs=106.4
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHHhcccc---chhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAEKTYT---NLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Dl~~~~~~~~~~---~l~~~v~~ 285 (405)
..+++++|. ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||..|+++........ ....++.+
T Consensus 12 ~~~v~dim~---~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~ 88 (164)
T 2pfi_A 12 HVRVEHFMN---HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQD 88 (164)
T ss_dssp SCBHHHHCB---CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHH
T ss_pred CCCHHHHcC---CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhh
Confidence 457888884 68899999999999999999999999999996 79999999999999877543211 11345666
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
++.........+.++++++++.++++.|.+++.+++||+| +|+++|+||..||++++..
T Consensus 89 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 89 ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp HHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred hhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence 6542111111178999999999999999999999999999 7999999999999999875
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=143.31 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=104.4
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..+|.++| ..+++++.++.++.+|+++|.+++++.+||+|++ ++++|++|..|+...+.
T Consensus 12 ~~~~~~~~--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~------------------ 70 (213)
T 1vr9_A 12 HMKVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL------------------ 70 (213)
T ss_dssp -CBGGGGC--BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT------------------
T ss_pred ccCHHHhh--cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC------------------
Confidence 45888888 6789999999999999999999999999999976 89999999999872210
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
..+++++|. ++++++.+++++.+|++.|.+
T Consensus 71 -----------------------------------------------~~~v~~im~---~~~~~v~~~~~l~~a~~~m~~ 100 (213)
T 1vr9_A 71 -----------------------------------------------DSSVFNKVS---LPDFFVHEEDNITHALLLFLE 100 (213)
T ss_dssp -----------------------------------------------TSBSGGGCB---CTTCCEETTSBHHHHHHHHHH
T ss_pred -----------------------------------------------CCcHHHHcc---CCCEEECCCCcHHHHHHHHHH
Confidence 125777773 688999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCcc-CceEecCCCCHHHHHHHHHHcCCCEEE
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFE-GVEKCLLDETLFTVMERIVRAEVHRLV 322 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lp 322 (405)
++++++||+|++|+++|+||.+|+++.+..... ..+. +.+ .+.+.....++.++.+.|.+++++.++
T Consensus 101 ~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~~------~~~~------~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~ 168 (213)
T 1vr9_A 101 HQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA------MDVP------GIRFSVLLEDKPGELRKVVDALALSNINILS 168 (213)
T ss_dssp CCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC-----------------------------------------------
T ss_pred hCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHhc------CCCC------cEEEEEEeCCCCccHHHHHHHHHHCCCcEEE
Confidence 999999999988999999999999988765421 0111 111 011123344599999999999999999
Q ss_pred EEcCCCc
Q psy744 323 VVDEDDH 329 (405)
Q Consensus 323 Vvd~~g~ 329 (405)
|++.+|.
T Consensus 169 V~~~~~~ 175 (213)
T 1vr9_A 169 VITTRSG 175 (213)
T ss_dssp -------
T ss_pred EEEEecC
Confidence 9865443
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=137.78 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=106.7
Q ss_pred cccccccccccc-CCeeEE--cCCCCHHHHHHHHHhcCCCEEEEE--CCCCcEEEEEeHHHHHHHHHhccc---------
Q psy744 211 NKTLRDLKIGTY-ENVETV--AEETSIIHALRKFLERRVSALPMT--DSEGHLVDIFAKFDVINLAAEKTY--------- 276 (405)
Q Consensus 211 ~~~v~~i~~~~~-~~~~~v--~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivt~~Dl~~~~~~~~~--------- 276 (405)
..+++++|.... .+++++ .+++++.+|++.|.+++++++||+ |++|+++|+||..|+++.......
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~ 89 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS 89 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccccc
Confidence 457889984211 117788 999999999999999999999999 788999999999999988764310
Q ss_pred --------------cchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 277 --------------TNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 277 --------------~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
.....++.+ .|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+||..||+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~------im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~ 162 (185)
T 2j9l_A 90 IIYFTEHSPPLPPYTPPTLKLRN------ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKH 162 (185)
T ss_dssp EEECSSSCCCCCTTCCCCEECGG------GEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred eeecccCCcccccccccCccHHH------hhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHH
Confidence 011223333 4667899999999999999999999999999999 8999999999999999
Q ss_pred HHhCC
Q psy744 343 LVLKP 347 (405)
Q Consensus 343 l~~~~ 347 (405)
+....
T Consensus 163 l~~~~ 167 (185)
T 2j9l_A 163 IAQMA 167 (185)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98644
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=131.96 Aligned_cols=125 Identities=14% Similarity=0.233 Sum_probs=104.4
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
...++.|+|....++++++++.++.+|++.|.++++.++||+|++.++++|++|..|+++.+..
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---------------- 66 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE---------------- 66 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC----------------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc----------------
Confidence 3567889995447889999999999999999999999999999754789999999998743210
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
...+++++| +++.++.+++++.++++.|.
T Consensus 67 -----------------------------------------------~~~~v~~~m----~~~~~v~~~~~l~~~~~~m~ 95 (129)
T 3jtf_A 67 -----------------------------------------------PALDIRSLV----RPAVFIPEVKRLNVLLREFR 95 (129)
T ss_dssp -----------------------------------------------TTSCGGGGC----BCCCEEETTCBHHHHHHHHH
T ss_pred -----------------------------------------------CCcCHHHHh----CCCeEeCCCCcHHHHHHHHH
Confidence 022566776 45889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++.+.+||+|++|+++|+||..|+++.+...
T Consensus 96 ~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 96 ASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp TSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred hcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 99999999999989999999999999987653
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-16 Score=126.01 Aligned_cols=119 Identities=24% Similarity=0.314 Sum_probs=103.2
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
++.|+| +.++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.+...
T Consensus 2 ~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~------------------ 60 (122)
T 3kpb_A 2 LVKDIL--SKPPITAHSNISIMEAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQN------------------ 60 (122)
T ss_dssp BHHHHC--CSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTT------------------
T ss_pred chHHhh--CCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhc------------------
Confidence 567888 5678999999999999999999999999999977 8999999999998665421
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
..++.++| .+++.++.+++++.++++.|.+++
T Consensus 61 ---------------------------------------------~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~ 92 (122)
T 3kpb_A 61 ---------------------------------------------KKTIEEIM---TRNVITAHEDEPVDHVAIKMSKYN 92 (122)
T ss_dssp ---------------------------------------------CCBGGGTS---BSSCCCEETTSBHHHHHHHHHHHT
T ss_pred ---------------------------------------------ccCHHHHh---cCCCeEECCCCCHHHHHHHHHHhC
Confidence 11566666 367889999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
.+.+||+|++|+++|+||..|+++++.+
T Consensus 93 ~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 93 ISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred CCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 9999999998999999999999987654
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-16 Score=133.92 Aligned_cols=127 Identities=15% Similarity=0.181 Sum_probs=107.6
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
+...++.|+|....++++++++.++.+|++.|.++++..+||+|.+.++++|++|..|+++.+...
T Consensus 39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------------- 104 (172)
T 3lhh_A 39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG-------------- 104 (172)
T ss_dssp ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT--------------
T ss_pred cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc--------------
Confidence 456799999954478999999999999999999999999999987557899999999998654321
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
...+++++| +++.++.+++++.++++.|
T Consensus 105 ------------------------------------------------~~~~v~~im----~~~~~v~~~~~l~~a~~~m 132 (172)
T 3lhh_A 105 ------------------------------------------------ERLELVDLV----KNCNFVPNSLSGMELLEHF 132 (172)
T ss_dssp ------------------------------------------------CCCCGGGGC----BCCEEEETTCCHHHHHHHH
T ss_pred ------------------------------------------------CcccHHHHh----cCCeEeCCCCCHHHHHHHH
Confidence 023677777 5789999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus 133 ~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~ 165 (172)
T 3lhh_A 133 RTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGE 165 (172)
T ss_dssp HHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred HHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence 999999999999999999999999999988765
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-16 Score=131.50 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=114.2
Q ss_pred hhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCC
Q psy744 74 GNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI 153 (405)
Q Consensus 74 ~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~ 153 (405)
....+.+.+...++.|+|. . .+++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.+...
T Consensus 6 ~~~~l~~~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~------ 75 (159)
T 3fv6_A 6 GTQLLADKLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQ------ 75 (159)
T ss_dssp -CHHHHHHHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSC------
T ss_pred hHHHHHHHHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhcc------
Confidence 3556888899999999994 3 4599999999999999999999999999977 8999999999998665211
Q ss_pred CHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCC
Q psy744 154 TMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETS 233 (405)
Q Consensus 154 ~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 233 (405)
......++.++|.. ..++.++.++++
T Consensus 76 -----------------------------------------------------~~~~~~~v~~~m~~-~~~~~~v~~~~~ 101 (159)
T 3fv6_A 76 -----------------------------------------------------QELTSVPVHIIMTR-MPNITVCRREDY 101 (159)
T ss_dssp -----------------------------------------------------SCTTTCBGGGTSEE-TTSCCCBCTTSB
T ss_pred -----------------------------------------------------CcccCcCHHHHHcC-CCCcEEECCCCC
Confidence 00113467787731 027899999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCC---cEEEEEeHHHHHHHHHhc
Q psy744 234 IIHALRKFLERRVSALPMTDSEG---HLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 234 l~~a~~~m~~~~~~~lpVvd~~g---~lvGivt~~Dl~~~~~~~ 274 (405)
+.+|++.|.+++++++||+|++| +++|+||..||++++.+-
T Consensus 102 l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 102 VMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp HHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHH
Confidence 99999999999999999999888 999999999999987653
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-16 Score=132.69 Aligned_cols=127 Identities=13% Similarity=0.188 Sum_probs=108.6
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeE-eCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLW-DSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~-d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
+...++.|+|....+++++++++++.+|++.|.+++++++||+ |++.++++|++|..|+++.+....
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~------------ 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD------------ 84 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT------------
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC------------
Confidence 4567999999443479999999999999999999999999999 543379999999999997654320
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
..+++++| +++.++.+++++.+|++.
T Consensus 85 --------------------------------------------------~~~v~~~m----~~~~~v~~~~~l~~~~~~ 110 (153)
T 3oco_A 85 --------------------------------------------------KAKISTIM----RDIVSVPENMKVPDVMEE 110 (153)
T ss_dssp --------------------------------------------------TSBGGGTC----BCCEEEETTSBHHHHHHH
T ss_pred --------------------------------------------------CCcHHHHh----CCCeEECCCCCHHHHHHH
Confidence 22567777 578999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus 111 m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 111 MSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp HHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-
T ss_pred HHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhcc
Confidence 9999999999999999999999999999988765
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=133.32 Aligned_cols=139 Identities=11% Similarity=0.039 Sum_probs=114.1
Q ss_pred hccchhHHHHHHh--hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHh
Q psy744 70 EKDGGNQIFVKFF--KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMY 147 (405)
Q Consensus 70 ~~~~~~~~~~~~l--~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~ 147 (405)
+...+.+.+++.+ ...++.|+|....++++++++.++.+|++.|.++++.++||+|.+.++++|++|..|++..+...
T Consensus 19 l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~ 98 (173)
T 3ocm_A 19 FGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE 98 (173)
T ss_dssp CCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC
Confidence 3444455555443 56799999965567999999999999999999999999999987557899999999999665421
Q ss_pred hCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeE
Q psy744 148 YTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227 (405)
Q Consensus 148 ~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 227 (405)
. ..+++ ++ +++++
T Consensus 99 ~--------------------------------------------------------------~~~v~-~~----~~~~~ 111 (173)
T 3ocm_A 99 G--------------------------------------------------------------RVRRN-RL----RDPII 111 (173)
T ss_dssp S--------------------------------------------------------------SCCGG-GS----BCCCE
T ss_pred C--------------------------------------------------------------cchhH-hc----CCCeE
Confidence 0 12344 33 67889
Q ss_pred EcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc
Q psy744 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275 (405)
Q Consensus 228 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~ 275 (405)
+.+++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+....
T Consensus 112 v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i 159 (173)
T 3ocm_A 112 VHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF 159 (173)
T ss_dssp ECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred ECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999987654
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=124.81 Aligned_cols=125 Identities=16% Similarity=0.223 Sum_probs=107.4
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
...++.|+| ..++++++++.++.+|++.|.++++..+||+| + ++++|++|..|++..+....
T Consensus 2 ~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~-------------- 63 (133)
T 2ef7_A 2 EEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGK-------------- 63 (133)
T ss_dssp CCCBGGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTC--------------
T ss_pred CcccHHHhc--cCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCC--------------
Confidence 456888999 55789999999999999999999999999999 5 89999999999986654210
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
....+++++|. +++.++.+++++.++++.|.
T Consensus 64 ----------------------------------------------~~~~~v~~~~~---~~~~~v~~~~~l~~~~~~~~ 94 (133)
T 2ef7_A 64 ----------------------------------------------SLETKAEEFMT---ASLITIREDSPITGALALMR 94 (133)
T ss_dssp ----------------------------------------------CTTCBGGGTSE---ECCCCEETTSBHHHHHHHHH
T ss_pred ----------------------------------------------CcccCHHHHcC---CCCEEECCCCCHHHHHHHHH
Confidence 01236777773 67889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++.+.+||+|++|+++|+||..|+++.+...
T Consensus 95 ~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 95 QFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp HHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred HcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 99999999999889999999999999887654
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=133.38 Aligned_cols=127 Identities=13% Similarity=0.179 Sum_probs=104.6
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.|+|....++++++++.++.+|++.|.++++.++||+|.+.++++|++|..|+++.+...
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~---------------- 65 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA---------------- 65 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS----------------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc----------------
Confidence 4578889954467899999999999999999999999999998646899999999988543210
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
.....+++++| +++.++.+++++.+|++.|.+
T Consensus 66 --------------------------------------------~~~~~~v~~~m----~~~~~v~~~~~l~~~~~~m~~ 97 (136)
T 3lfr_A 66 --------------------------------------------DGDSDDVKKLL----RPATFVPESKRLNVLLREFRA 97 (136)
T ss_dssp --------------------------------------------SGGGCCGGGTC----BCCCEEETTCBHHHHHHHHHH
T ss_pred --------------------------------------------cCCCcCHHHHc----CCCeEECCCCcHHHHHHHHHh
Confidence 00134677887 458999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++.+.+||+|++|+++|+||..|+++.+...
T Consensus 98 ~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 98 NHNHMAIVIDEYGGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp HTCCEEEEECTTSCEEEEEEHHHHHTTC---
T ss_pred cCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 9999999999999999999999999876654
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=130.33 Aligned_cols=124 Identities=11% Similarity=0.208 Sum_probs=102.5
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.|+|....++++++++.++.+|++.|.++++.++||+|++.++++|++|..|+++.+...
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~---------------- 65 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD---------------- 65 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTT----------------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcc----------------
Confidence 4577888844356899999999999999999999999999997646899999999988443210
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
....+++++| +++.++.+++++.++++.|.+
T Consensus 66 ---------------------------------------------~~~~~v~~~m----~~~~~v~~~~~l~~a~~~m~~ 96 (127)
T 3nqr_A 66 ---------------------------------------------AEAFSMDKVL----RTAVVVPESKRVDRMLKEFRS 96 (127)
T ss_dssp ---------------------------------------------CCCCCHHHHC----BCCCEEETTCBHHHHHHHHHH
T ss_pred ---------------------------------------------CCCCCHHHHc----CCCeEECCCCcHHHHHHHHHh
Confidence 0123567777 347899999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
++.+.+||+|++|+++|+||..|+++.+.
T Consensus 97 ~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 97 QRYHMAIVIDEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp TTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred cCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 99999999999999999999999998754
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-16 Score=131.05 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=111.1
Q ss_pred HhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 81 FFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 81 ~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
.|...++.|+|....+++++.+++++.+|++.|.++++..+||+|++ ++++|++|..|+++.+.... ..
T Consensus 11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~---~~------- 79 (150)
T 3lqn_A 11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLE---RI------- 79 (150)
T ss_dssp HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSS---SB-------
T ss_pred hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhc---cc-------
Confidence 45678999999554679999999999999999999999999999987 89999999999996653210 00
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
........++.++|. +++.++.+++++.+|++.
T Consensus 80 --------------------------------------------~~~~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~ 112 (150)
T 3lqn_A 80 --------------------------------------------EFERLEEMKVEQVMK---QDIPVLKLEDSFAKALEM 112 (150)
T ss_dssp --------------------------------------------CGGGGGGCBGGGTCB---SSCCEEETTCBHHHHHHH
T ss_pred --------------------------------------------chhHHhcCCHHHHhc---CCCceeCCCCCHHHHHHH
Confidence 001122457888883 788999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|.++++ +||+|++|+++|+||..|+++.+...
T Consensus 113 ~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 113 TIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp HHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred HHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence 999886 99999999999999999999988765
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=144.15 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=106.7
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLER-----RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~ 285 (405)
..+++++| .++++++.+++++.+|++.|.++ +++++||+|++|+++|+||.+|++... ...++.+
T Consensus 136 ~~~v~~iM---~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~-------~~~~v~~ 205 (286)
T 2oux_A 136 DETAGAIM---TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND-------DDTLIAD 205 (286)
T ss_dssp TTBHHHHC---BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------TTSBHHH
T ss_pred hHHHHHhC---CCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC-------CCCcHHH
Confidence 45888999 47899999999999999999987 889999999999999999999997641 2445666
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
+ |.+++.++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..+
T Consensus 206 i------m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 206 I------LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp H------SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred H------cCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 6 557889999999999999999999999999999899999999999999998754
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=124.22 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=104.6
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCC--eeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQ--QYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~--~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
.++.|+| ..+++++.++.++.+|++.|.+++++.+||+|++ + +++|++|..|+++.+....
T Consensus 5 ~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~-------------- 67 (141)
T 2rih_A 5 IRTSELL--KRPPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRL-------------- 67 (141)
T ss_dssp CBGGGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTC--------------
T ss_pred eEHHHHh--cCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCC--------------
Confidence 5788999 5689999999999999999999999999999986 6 9999999999986654210
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
....++.++| .+++.++.++ ++.++++.|.
T Consensus 68 ----------------------------------------------~~~~~v~~~m---~~~~~~v~~~-~l~~a~~~m~ 97 (141)
T 2rih_A 68 ----------------------------------------------DLDGPAMPIA---NSPITVLDTD-PVHVAAEKMR 97 (141)
T ss_dssp ----------------------------------------------CTTSBSGGGC---BCCCEEETTS-BHHHHHHHHH
T ss_pred ----------------------------------------------CCCCCHHHHc---CCCCeEEcCC-CHHHHHHHHH
Confidence 0134677887 3788999999 9999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+++.+.+||+|++|+++|+||..|++++..
T Consensus 98 ~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 98 RHNIRHVVVVNKNGELVGVLSIRDLCFERA 127 (141)
T ss_dssp HHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred HcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 999999999998899999999999987654
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=139.23 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=104.9
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHHHHHhccc--cc--------
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE--GHLVDIFAKFDVINLAAEKTY--TN-------- 278 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~Dl~~~~~~~~~--~~-------- 278 (405)
..+++++| .++++++.+++++.+|.++|.+++++++||||++ ++++|+|+..||++++..... ..
T Consensus 12 ~~~v~diM---t~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~ 88 (250)
T 2d4z_A 12 NIQVGDIM---VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA 88 (250)
T ss_dssp SCBTTSSS---BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred CCChHHhc---CCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 45889999 4889999999999999999999999999999964 689999999999987653200 00
Q ss_pred ----------------------h-h-------------------------------------------------------
Q psy744 279 ----------------------L-D------------------------------------------------------- 280 (405)
Q Consensus 279 ----------------------l-~------------------------------------------------------- 280 (405)
+ +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (250)
T 2d4z_A 89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE 168 (250)
T ss_dssp CCC---------------------------------------------------------------------------CC
T ss_pred cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence 0 0
Q ss_pred --hhHH-------Hhhh--c--c-ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 281 --VTLK-------EANE--H--K-TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 281 --~~v~-------~~~~--~--~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
.... +.+. + . ..|...++++.++++|.++..+|...+++++||++ .|+|+||||+.||++++.
T Consensus 169 ~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 169 EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp SCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred cccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 0000 0011 1 1 24778899999999999999999999999999998 799999999999999996
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=141.52 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=103.1
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLER-----RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~ 285 (405)
..+++++|. ++++++.+++++.++++.|.+. +++++||+|++|+++|+||.+|++... ...++.
T Consensus 134 ~~~v~~iM~---~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~-------~~~~v~- 202 (278)
T 2yvy_A 134 EDEAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD-------PRTRVA- 202 (278)
T ss_dssp TTBGGGTCB---SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC-------TTCBST-
T ss_pred cchHHhhcC---CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC-------CCCcHH-
Confidence 457888984 7899999999999999999987 789999999889999999999998641 122333
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
+.|.++++++++++++.++++.|.+++.+.+||||++|+++|+||..||++.+..+.
T Consensus 203 -----~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~ 259 (278)
T 2yvy_A 203 -----EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA 259 (278)
T ss_dssp -----TTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC----
T ss_pred -----HHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHh
Confidence 346688999999999999999999999999999998999999999999999987543
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=125.78 Aligned_cols=128 Identities=24% Similarity=0.370 Sum_probs=107.1
Q ss_pred HHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHH-HHHHHHhhCCCCCCHHHH
Q psy744 80 KFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDF-IKILQMYYTSSSITMEEL 158 (405)
Q Consensus 80 ~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Di-l~~l~~~~~~~~~~~~~l 158 (405)
++|...++.++| +.+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+ ++++...
T Consensus 3 ~~l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~----------- 68 (138)
T 2p9m_A 3 DTLKNIKVKDVM--TKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDK----------- 68 (138)
T ss_dssp --CTTCBGGGTS--BCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTC-----------
T ss_pred cccccCCHHHhh--cCCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhc-----------
Confidence 467788999999 5688999999999999999999999999999987 899999999999 7543210
Q ss_pred hhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHH
Q psy744 159 EEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHAL 238 (405)
Q Consensus 159 ~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~ 238 (405)
.....+++++|. +++.++.+++++.+++
T Consensus 69 -------------------------------------------------~~~~~~v~~~m~---~~~~~v~~~~~l~~~~ 96 (138)
T 2p9m_A 69 -------------------------------------------------YTLETTIGDVMT---KDVITIHEDASILEAI 96 (138)
T ss_dssp -------------------------------------------------CCSSCBHHHHSC---SSCCCEETTSBHHHHH
T ss_pred -------------------------------------------------ccCCcCHHHHhC---CCcEEECCCCCHHHHH
Confidence 011346777773 6788999999999999
Q ss_pred HHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 239 RKFLERR-----VSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 239 ~~m~~~~-----~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+.|.+++ .+.+||+|++|+++|+||..|+++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 97 KKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp HHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred HHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 9999999 9999999988999999999999987654
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=126.21 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=105.7
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
.+.++.++| ..++.+++++.++.+|++.|.++++..+||+|+ ++++|++|..|+++.+...
T Consensus 3 ~s~~v~~~m--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~--------------- 63 (128)
T 3gby_A 3 ASVTFSYLA--ETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGW--------------- 63 (128)
T ss_dssp TTCBGGGGC--BCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSS---------------
T ss_pred cceEHHHhh--cCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhC---------------
Confidence 356889999 667899999999999999999999999999998 8999999999998432110
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
.....+++++|. +++.++.+++++.++++.|.
T Consensus 64 ---------------------------------------------~~~~~~v~~~m~---~~~~~v~~~~~l~~~~~~~~ 95 (128)
T 3gby_A 64 ---------------------------------------------PTVKEKLGEELL---ETVRSYRPGEQLFDNLISVA 95 (128)
T ss_dssp ---------------------------------------------CCTTCBCCGGGC---BCCCCBCTTSBGGGSHHHHH
T ss_pred ---------------------------------------------CcccCcHHHHcc---CCCcEECCCCCHHHHHHHHH
Confidence 000236777773 67889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+++.+++||+|++|+++|+||..|+++++.+
T Consensus 96 ~~~~~~lpVvd~~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 96 AAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp HCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred hCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999999988754
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=130.92 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=109.6
Q ss_pred hhhcccccccCCC-CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 82 FKFHKCYDLIPTS-AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 82 l~~~~~~d~~p~s-~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
+...++.|+|... .+++++++++++.+|++.|.++++..+||+|++ ++++|++|..|+++.+.....
T Consensus 21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~----------- 88 (165)
T 3fhm_A 21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGA----------- 88 (165)
T ss_dssp SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGG-----------
T ss_pred hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCC-----------
Confidence 3456788888432 468999999999999999999999999999987 899999999999977654310
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
.....++.++|. +++.++.+++++.++++.
T Consensus 89 -----------------------------------------------~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~ 118 (165)
T 3fhm_A 89 -----------------------------------------------ASLQQSVSVAMT---KNVVRCQHNSTTDQLMEI 118 (165)
T ss_dssp -----------------------------------------------GGGTSBGGGTSB---SSCCCBCTTCBHHHHHHH
T ss_pred -----------------------------------------------ccccCCHHHHhc---CCCeEECCCCcHHHHHHH
Confidence 011347788873 788999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|.+++++++||+|+ |+++|+||..|+++++...
T Consensus 119 m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~ 151 (165)
T 3fhm_A 119 MTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE 151 (165)
T ss_dssp HHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred HHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence 99999999999998 9999999999999987654
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=119.94 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=102.6
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
++.|+| .+++++++++.++.+|++.|.+++++.+||+| + ++++|++|..|+++.+.....
T Consensus 2 ~v~~~m--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~---------------- 61 (125)
T 1pbj_A 2 RVEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDD---------------- 61 (125)
T ss_dssp CHHHHC--BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCC----------------
T ss_pred CHHHhc--CCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCc----------------
Confidence 456788 55889999999999999999999999999999 5 999999999999966543200
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
....++.++|. +++.++.+++++.++++.|.+++
T Consensus 62 -------------------------------------------~~~~~v~~~m~---~~~~~v~~~~~l~~~~~~~~~~~ 95 (125)
T 1pbj_A 62 -------------------------------------------LAEVKVWEVME---RDLVTISPRATIKEAAEKMVKNV 95 (125)
T ss_dssp -------------------------------------------TTTSBHHHHCB---CGGGEECTTSCHHHHHHHHHHHT
T ss_pred -------------------------------------------ccccCHHHHcC---CCCeEECCCCCHHHHHHHHHhcC
Confidence 01336677773 67899999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++.+||+|+ |+++|++|..|+++.+.+.
T Consensus 96 ~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 96 VWRLLVEED-DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp CSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred CcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence 999999998 9999999999999877543
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=126.47 Aligned_cols=130 Identities=13% Similarity=0.270 Sum_probs=106.1
Q ss_pred hHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCC
Q psy744 75 NQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSIT 154 (405)
Q Consensus 75 ~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~ 154 (405)
...+.+.+ ..++.|+|....++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.+....
T Consensus 19 ~~~l~~~l-~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~------ 90 (149)
T 3k2v_A 19 GGALGRKL-LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGV------ 90 (149)
T ss_dssp -CHHHHHT-TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSS------
T ss_pred Cchhchhc-ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCC------
Confidence 33444443 36999999432389999999999999999999999999999987 89999999999996653210
Q ss_pred HHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCH
Q psy744 155 MEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSI 234 (405)
Q Consensus 155 ~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l 234 (405)
.+...+++++|. +++.++.+++++
T Consensus 91 -----------------------------------------------------~~~~~~v~~~m~---~~~~~v~~~~~l 114 (149)
T 3k2v_A 91 -----------------------------------------------------DMRDASIADVMT---RGGIRIRPGTLA 114 (149)
T ss_dssp -----------------------------------------------------CCTTCBHHHHSE---ESCCEECTTCBH
T ss_pred -----------------------------------------------------CcccCcHHHHcC---CCCeEECCCCCH
Confidence 011346777773 678899999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q psy744 235 IHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 235 ~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~ 269 (405)
.++++.|.+++++.+||+|++ +++|+||..|+++
T Consensus 115 ~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 115 VDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp HHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred HHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 999999999999999999975 9999999999864
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=123.22 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=103.8
Q ss_pred ccccccC-CCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 86 KCYDLIP-TSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 86 ~~~d~~p-~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
++.|+|. ...++++++++.++.+|++.|.++++..+||+| + ++++|++|..|+++.+....
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~---------------- 68 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLD---------------- 68 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSS----------------
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcC----------------
Confidence 7788883 116789999999999999999999999999999 4 89999999999985332110
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
......++.++|. +++.++.+++++.++++.|.++
T Consensus 69 ------------------------------------------~~~~~~~v~~~m~---~~~~~v~~~~~l~~~~~~m~~~ 103 (135)
T 2rc3_A 69 ------------------------------------------KPVKDTQVKEIMT---RQVAYVDLNNTNEDCMALITEM 103 (135)
T ss_dssp ------------------------------------------SCGGGSBGGGTSB---CSCCCBCTTCBHHHHHHHHHHH
T ss_pred ------------------------------------------CCcccCCHHHhcc---CCCeEECCCCcHHHHHHHHHHh
Confidence 0012447788883 6889999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+.+.+||+| +|+++|+||..|+++.+.+.
T Consensus 104 ~~~~lpVvd-~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 104 RVRHLPVLD-DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp TCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred CCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence 999999999 79999999999999887653
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=127.24 Aligned_cols=142 Identities=23% Similarity=0.272 Sum_probs=109.2
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
+..++.|+|....++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|++.++..... ...+..
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~-----~~~~~~-- 74 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDST-----WKTFNA-- 74 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----C-----CHHHHH--
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCc-----ccchHH--
Confidence 356889999555589999999999999999999999999999987 899999999999854321100 000000
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
+.... ......++.++|. ++++++.+++++.++++.|.
T Consensus 75 ----------------------------------~~~~~-----~~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~~~ 112 (152)
T 4gqw_A 75 ----------------------------------VQKLL-----SKTNGKLVGDLMT---PAPLVVEEKTNLEDAAKILL 112 (152)
T ss_dssp ----------------------------------HHTC----------CCBHHHHSE---ESCCCEESSSBHHHHHHHHH
T ss_pred ----------------------------------HHHHH-----HHhccccHHHhcC---CCceEECCCCcHHHHHHHHH
Confidence 00000 0012347788883 67889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++++.+||+|++|+++|+||..|+++.+...
T Consensus 113 ~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 113 ETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp HSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred HCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 99999999999999999999999999987654
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=127.01 Aligned_cols=132 Identities=16% Similarity=0.249 Sum_probs=108.0
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.|+| +.+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.+...+.... .
T Consensus 4 ~~~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~------~---- 70 (160)
T 2o16_A 4 MIKVEDMM--TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSA------Q---- 70 (160)
T ss_dssp CCBGGGTS--EESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC--------------
T ss_pred cCcHHHHh--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccc------c----
Confidence 45788999 5578999999999999999999999999999976 899999999999987654321000 0
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
........++.++|. +++.++.+++++.+|++.|.+
T Consensus 71 -----------------------------------------~~~~~~~~~v~~im~---~~~~~v~~~~~l~~a~~~m~~ 106 (160)
T 2o16_A 71 -----------------------------------------GDSLAFETPLFEVMH---TDVTSVAPQAGLKESAIYMQK 106 (160)
T ss_dssp ----------------------------------------------CCCBHHHHSC---SCEEEBCTTSBHHHHHHHHHH
T ss_pred -----------------------------------------ccchhcccCHHHHhc---CCCeEECCCCCHHHHHHHHHH
Confidence 000112447888883 789999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
.+.+.+||+|+ |+++|+||..||++.+..
T Consensus 107 ~~~~~lpVvd~-g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 107 HKIGCLPVVAK-DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp TTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred hCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 99999999997 999999999999988764
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.4e-15 Score=121.88 Aligned_cols=127 Identities=19% Similarity=0.236 Sum_probs=107.3
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
|...++.|+| +.++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.+...
T Consensus 4 l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~-------------- 66 (138)
T 2yzi_A 4 DMKAPIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVP-------------- 66 (138)
T ss_dssp CTTSBGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTT--------------
T ss_pred hhhhhHHHHh--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhc--------------
Confidence 4567899999 5689999999999999999999999999999976 8999999999997332110
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
+ .....++.++| .+++.++.+++++.++++.|
T Consensus 67 --------------------~-------------------------~~~~~~v~~~m---~~~~~~v~~~~~l~~~~~~m 98 (138)
T 2yzi_A 67 --------------------G-------------------------LPYDIPVERIM---TRNLITANVNTPLGEVLRKM 98 (138)
T ss_dssp --------------------C-------------------------CCTTSBGGGTC---BCSCCEEETTSBHHHHHHHH
T ss_pred --------------------C-------------------------CcccCCHHHHh---hCCCeEECCCCcHHHHHHHH
Confidence 0 01134677777 36889999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.+++.+++ |+|++|+++|+||..|+++.+...
T Consensus 99 ~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 99 AEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR 130 (138)
T ss_dssp HHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred HhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence 99999999 999889999999999999987754
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=128.52 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=112.8
Q ss_pred ccchhHHHHHHhh--hcccccccCCCCCeEEEeCCccHHHHHHHHHHc---CCceeeeEeCCCCeeeeEEeHHHHHHHHH
Q psy744 71 KDGGNQIFVKFFK--FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYN---GIRAAPLWDSVHQQYVGMLTITDFIKILQ 145 (405)
Q Consensus 71 ~~~~~~~~~~~l~--~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~---~i~~~PV~d~~~~~~~GilT~~Dil~~l~ 145 (405)
...+.+.+++.++ ..++.++| +.++++++++.++.+|++.|.++ ++..+||+|++ ++++|++|..|++..
T Consensus 38 ~~~e~~~i~~~l~~~~~~v~~iM--~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~-- 112 (205)
T 3kxr_A 38 GERQRQRFELYDQYSENEIGRYT--DHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH-- 112 (205)
T ss_dssp CHHHHHHHHHHHHSCTTCGGGGC--BCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS--
T ss_pred CHHHHHHHHHHhCCCcchHHhhc--cCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC--
Confidence 3445555655544 45899999 56899999999999999999998 89999999987 899999999998621
Q ss_pred HhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCe
Q psy744 146 MYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENV 225 (405)
Q Consensus 146 ~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 225 (405)
. ...+++++| .+++
T Consensus 113 ----~-----------------------------------------------------------~~~~v~~im---~~~~ 126 (205)
T 3kxr_A 113 ----E-----------------------------------------------------------PHEPLISLL---SEDS 126 (205)
T ss_dssp ----C-----------------------------------------------------------TTSBGGGGC---CSSC
T ss_pred ----C-----------------------------------------------------------CcchHHHHh---cCCC
Confidence 0 023677888 3788
Q ss_pred eEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc
Q psy744 226 ETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275 (405)
Q Consensus 226 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~ 275 (405)
+++++++++.++++.|.+++++.+||+|++|+++|+||..|++..+.+..
T Consensus 127 ~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~ 176 (205)
T 3kxr_A 127 RALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY 176 (205)
T ss_dssp CCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred eEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887653
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=130.04 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=102.6
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
+...++.|+|....++++++++.++.+|++.|.++++..+||+|++.++++|++|..|++..+...
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------------- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------------- 100 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG--------------
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC--------------
Confidence 456799999954457999999999999999999999999999998634899999999988432110
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
...+++++| +++.++.+++++.+|++.|
T Consensus 101 ------------------------------------------------~~~~v~~im----~~~~~v~~~~~l~~a~~~m 128 (156)
T 3oi8_A 101 ------------------------------------------------EQFHLKSIL----RPAVFVPEGKSLTALLKEF 128 (156)
T ss_dssp ------------------------------------------------GGCCHHHHC----BCCCEEETTSBHHHHHHHH
T ss_pred ------------------------------------------------CcccHHHHc----CCCEEECCCCCHHHHHHHH
Confidence 133567777 3588999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHH
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVI 268 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~ 268 (405)
.+++.+.+||+|++|+++|+||..|++
T Consensus 129 ~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 129 REQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp HHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred HhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 999999999999999999999999985
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=121.22 Aligned_cols=129 Identities=13% Similarity=0.169 Sum_probs=100.7
Q ss_pred hccccc---ccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 84 FHKCYD---LIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 84 ~~~~~d---~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
..+..+ +| ..++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.+......
T Consensus 7 ~~~v~~~~~~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~---------- 73 (144)
T 2nyc_A 7 KIPIGDLNIIT--QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYN---------- 73 (144)
T ss_dssp GSBGGGSSCCB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC-------------
T ss_pred hcchhhcCCCC--CCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccc----------
Confidence 345555 45 4678999999999999999999999999999987 8999999999999765421000
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccc---cCCeeEEcCCCCHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGT---YENVETVAEETSIIHA 237 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~v~~~~~l~~a 237 (405)
....++.++|... ..++.++.+++++.++
T Consensus 74 ------------------------------------------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~ 105 (144)
T 2nyc_A 74 ------------------------------------------------DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTI 105 (144)
T ss_dssp -------------------------------------------------CCSBHHHHHHHCC------CEECTTSBHHHH
T ss_pred ------------------------------------------------cCCccHHHHHhcCccccCCCeEECCCCcHHHH
Confidence 0022344444210 0267899999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 238 LRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 238 ~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus 106 ~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 106 MDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 999999999999999988999999999999988754
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=123.22 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=102.5
Q ss_pred HhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHH-HHHHhhCCCCCCHHHHh
Q psy744 81 FFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIK-ILQMYYTSSSITMEELE 159 (405)
Q Consensus 81 ~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~-~l~~~~~~~~~~~~~l~ 159 (405)
.++..++.|+| +++++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|++. .+....
T Consensus 4 ~~~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~----------- 69 (133)
T 1y5h_A 4 PFTMTTARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGL----------- 69 (133)
T ss_dssp ----CCHHHHS--EETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTC-----------
T ss_pred hhhhcCHHHHh--cCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCC-----------
Confidence 34556888888 4578999999999999999999999999999876 89999999999983 322110
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALR 239 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~ 239 (405)
.....+++++| .+++.++.+++++.++++
T Consensus 70 ------------------------------------------------~~~~~~v~~~m---~~~~~~v~~~~~l~~~~~ 98 (133)
T 1y5h_A 70 ------------------------------------------------DPNTATAGELA---RDSIYYVDANASIQEMLN 98 (133)
T ss_dssp ------------------------------------------------CTTTSBHHHHH---TTCCCCEETTCCHHHHHH
T ss_pred ------------------------------------------------CccccCHHHHh---cCCCEEECCCCCHHHHHH
Confidence 00133667777 367889999999999999
Q ss_pred HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 240 KFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 240 ~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
.|.+++.+++||+|+ |+++|++|..|+++.+.
T Consensus 99 ~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 99 VMEEHQVRRVPVISE-HRLVGIVTEADIARHLP 130 (133)
T ss_dssp HHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred HHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 999999999999997 99999999999987653
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=120.91 Aligned_cols=141 Identities=13% Similarity=0.235 Sum_probs=109.9
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCce-eeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRA-APLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~-~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
+...++.|+| +.+++++++++++.+|++.|.+++++. +||+|++ +++|++|..|+++.+...+.... .
T Consensus 13 ~~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~------~- 81 (157)
T 1o50_A 13 MKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFI------P- 81 (157)
T ss_dssp CBHHHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCC------C-
T ss_pred hccccHhhcc--cCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhh------c-
Confidence 3456888999 668999999999999999999999999 9999985 99999999999987653210000 0
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
..+ . + ... .......++.++|. + ++++.+++++.+|++.
T Consensus 82 -------------------~~~---------~---~-~~~-----~~~~~~~~v~~im~---~-~~~v~~~~~l~~a~~~ 120 (157)
T 1o50_A 82 -------------------KEE---------L---I-RSS-----MKRLIAKNASEIML---D-PVYVHMDTPLEEALKL 120 (157)
T ss_dssp ---------------------------------------C-----CCCCSSCBHHHHCB---C-CCCBCTTSBHHHHHHH
T ss_pred -------------------cHH---------H---H-HHH-----HHHHcCCcHHHHcC---C-CeEECCCCCHHHHHHH
Confidence 000 0 0 000 01123457888883 6 8999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|.+++++++||+|++|+++|+||..|+++.+.+.
T Consensus 121 m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 121 MIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp HHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred HHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence 9999999999999889999999999999987654
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-15 Score=128.13 Aligned_cols=154 Identities=21% Similarity=0.276 Sum_probs=108.8
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
.++.|+|....+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.......... ...+.
T Consensus 4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~--~~~~~----- 75 (180)
T 3sl7_A 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQN--DTNLF----- 75 (180)
T ss_dssp CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC---------------------
T ss_pred eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCC--ccccc-----
Confidence 4778888443478999999999999999999999999999987 899999999999854321100000 00000
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
+-. .. ......++...+. .....+++++|. ++++++.+++++.+|++.|.++
T Consensus 76 -----------~~~--~~---~~~~~~~~~~~~~---------~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~ 127 (180)
T 3sl7_A 76 -----------PDV--DS---TWKTFNELQKLIS---------KTYGKVVGDLMT---PSPLVVRDSTNLEDAARLLLET 127 (180)
T ss_dssp ---------------------CCCSHHHHHHHHH---------TTTTCBHHHHSE---ESCCCEETTSBHHHHHHHHTTS
T ss_pred -----------ccc--cc---hhhhhHHHHHHHh---------ccccccHHHHhC---CCceEeCCCCcHHHHHHHHHHc
Confidence 000 00 0001111111111 012457888883 6788999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++++||+|++|+++|+||..|+++.+...
T Consensus 128 ~~~~lpVvd~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 128 KFRRLPVVDADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp TTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred CCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 999999999999999999999999987654
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=124.02 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=107.7
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
+...++.|+|....+++++.++.++.+|++.|.+++++.+||+|++ ++++|++|..|++..+... ...
T Consensus 8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~---~~~-------- 75 (157)
T 2emq_A 8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGL---ERI-------- 75 (157)
T ss_dssp --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCS---SSB--------
T ss_pred HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcc---ccc--------
Confidence 4577899999443478999999999999999999999999999986 8999999999998654311 000
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
........++.++|. +++.++.+++++.++++.|
T Consensus 76 -------------------------------------------~~~~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~m 109 (157)
T 2emq_A 76 -------------------------------------------EFERLETMKVEEVMN---RNIPRLRLDDSLMKAVGLI 109 (157)
T ss_dssp -------------------------------------------CGGGGGTCBGGGTCB---CCCCEEETTSBHHHHHHHH
T ss_pred -------------------------------------------chHHhcCCcHHHHhC---CCCceecCCCcHHHHHHHH
Confidence 001112447788873 7889999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.++++ +||+|++|+++|+||..|+++.+...
T Consensus 110 ~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 110 VNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp HHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred hhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 99887 99999889999999999999988765
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=148.46 Aligned_cols=127 Identities=11% Similarity=0.191 Sum_probs=108.7
Q ss_pred ccccccccccccccCCeeEEcCC-CCHHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHHhccccchhhhHHHh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEE-TSIIHALRKFLERRVSALPMTD-SEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~ 286 (405)
+...+++++|. ++++++.++ +++.+++++|.+++++++||+| ++|+++|+||.+||++.+.... .....++.++
T Consensus 381 l~~~~V~diM~---~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~-~~~~~~V~~i 456 (527)
T 3pc3_A 381 WWSLAIAELEL---PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMN-RQQSDPAIKA 456 (527)
T ss_dssp TTTSBGGGGCC---CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHC-CCTTSBGGGG
T ss_pred ccCCcHHHhCc---CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhcc-CcCCCcHHHH
Confidence 44568899994 789999999 9999999999999999999999 7899999999999998877642 2234455555
Q ss_pred hhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEeHHHHHHHHHhCC
Q psy744 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED----DHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++.++++++++.+++++|.++++ +||||++ |+++||||..||++++....
T Consensus 457 ------m~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 457 ------LNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp ------EETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred ------hcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 66899999999999999999977665 7999974 99999999999999998654
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=124.72 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=112.5
Q ss_pred HHhhhcccccccCCCCC--eEEE--eCCccHHHHHHHHHHcCCceeeeE--eCCCCeeeeEEeHHHHHHHHHHhhCCCCC
Q psy744 80 KFFKFHKCYDLIPTSAK--LVVF--DTQLLVKKAFFALVYNGIRAAPLW--DSVHQQYVGMLTITDFIKILQMYYTSSSI 153 (405)
Q Consensus 80 ~~l~~~~~~d~~p~s~~--vv~v--~~~~~v~~A~~~m~~~~i~~~PV~--d~~~~~~~GilT~~Dil~~l~~~~~~~~~ 153 (405)
.++...++.|+|....+ ++++ +++.++.+|++.|.+++++.+||+ |++ ++++|++|..|+++.+.........
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-~~lvGiit~~dl~~~~~~~~~~~~~ 84 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-QRLVGFVLRRDLIISIENARKKQDG 84 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-CBEEEEEEHHHHHHHHHHHHTSCSC
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCC
Confidence 46678899999955422 7778 999999999999999999999999 555 8999999999999877643211100
Q ss_pred CHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCC
Q psy744 154 TMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETS 233 (405)
Q Consensus 154 ~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 233 (405)
... ..+...... ............++.++| .+++.++.++++
T Consensus 85 ~~~----------------~~~~~~~~~-------------------~~~~~~~~~~~~~v~~im---~~~~~~v~~~~~ 126 (185)
T 2j9l_A 85 VVS----------------TSIIYFTEH-------------------SPPLPPYTPPTLKLRNIL---DLSPFTVTDLTP 126 (185)
T ss_dssp CCT----------------TCEEECSSS-------------------CCCCCTTCCCCEECGGGE---ESSCCEEETTSB
T ss_pred ccc----------------cceeecccC-------------------CcccccccccCccHHHhh---CcCCeEeCCCCC
Confidence 000 000000000 000000112345788888 378899999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 234 IIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 234 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+.+|++.|.+++.+++||+| +|+++|+||..|+++.+.+.
T Consensus 127 l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 127 MEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp HHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence 99999999999999999999 89999999999999988765
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=123.70 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=105.8
Q ss_pred cccccccCCC----CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 85 HKCYDLIPTS----AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 85 ~~~~d~~p~s----~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
.++.|+|... +++++++++.++.+|++.|.++++..+||.| + ++++|++|..|+++.+.....
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~----------- 73 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-DDIAGIVTERDYARKVVLQER----------- 73 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-SSEEEEEEHHHHHHHSGGGTC-----------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHHhccC-----------
Confidence 3677777433 6789999999999999999999999999965 4 899999999999966542210
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
.....+++++|. +++.++.+++++.++++.
T Consensus 74 -----------------------------------------------~~~~~~v~~~m~---~~~~~v~~~~~l~~~~~~ 103 (157)
T 4fry_A 74 -----------------------------------------------SSKATRVEEIMT---AKVRYVEPSQSTDECMAL 103 (157)
T ss_dssp -----------------------------------------------CSSSCBHHHHSB---SSCCCBCTTSBHHHHHHH
T ss_pred -----------------------------------------------CccccCHHHHcC---CCCcEECCCCcHHHHHHH
Confidence 011346777773 678999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~ 275 (405)
|.+++++++||+| +|+++|+||..|+++++....
T Consensus 104 m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 104 MTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp HHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence 9999999999999 799999999999999987653
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=125.59 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=106.4
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
.++.|+| .+++++++++.++.+|+++|.++++..+||+|++ ++++|++|..|++..+....
T Consensus 9 ~~v~~im--~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~---------------- 69 (184)
T 1pvm_A 9 MRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRN---------------- 69 (184)
T ss_dssp CBGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGC----------------
T ss_pred cCHHHhc--CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcc----------------
Confidence 5788999 5689999999999999999999999999999976 89999999999986543210
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
......+++++|. +++.++.+++++.+|++.|.++
T Consensus 70 ------------------------------------------~~~~~~~v~~im~---~~~~~v~~~~~l~~a~~~m~~~ 104 (184)
T 1pvm_A 70 ------------------------------------------KKPDEVPIRLVMR---KPIPKVKSDYDVKDVAAYLSEN 104 (184)
T ss_dssp ------------------------------------------CCGGGSBGGGTSB---SSCCEEETTCBHHHHHHHHHHH
T ss_pred ------------------------------------------cCcccCCHHHHhC---CCCcEECCCCCHHHHHHHHHHc
Confidence 0011347788883 6889999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+.+.+||+|++|+++|+||..|+++++..
T Consensus 105 ~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 105 GLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp TCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred CCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 99999999988999999999999876654
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-14 Score=128.60 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=112.7
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC-CCeeeeEEeHHHHHHHHHHhhCCCCC---C----
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV-HQQYVGMLTITDFIKILQMYYTSSSI---T---- 154 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~-~~~~~GilT~~Dil~~l~~~~~~~~~---~---- 154 (405)
...++.|+| +++++++.+++++.+|.++|.+++++++||+|+. .++++|+||..||+..+......... .
T Consensus 11 ~~~~v~diM--t~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~ 88 (250)
T 2d4z_A 11 YNIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA 88 (250)
T ss_dssp SSCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred CCCChHHhc--CCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 456899999 7789999999999999999999999999999975 26899999999999887644211000 0
Q ss_pred -----------------HH--HHhhccHHHHHHhcC------CCEEE---E--EeCCCC-------------------EE
Q psy744 155 -----------------ME--ELEEHKLETNLIDYK------IHRLP---V--IDEMGN-------------------VL 185 (405)
Q Consensus 155 -----------------~~--~l~~~~i~~~l~~~~------i~~lp---V--vd~~~~-------------------vv 185 (405)
.. .+........-.+.+ ....| . -+.++. ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (250)
T 2d4z_A 89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE 168 (250)
T ss_dssp CCC---------------------------------------------------------------------------CC
T ss_pred cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence 00 000000000000000 00000 0 000000 00
Q ss_pred EEEeHHHHHHHHHHhhCCCCCcccccccc--cc-ccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEE
Q psy744 186 YILTHKRILRFLFLYINDLPKPSFLNKTL--RD-LKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIF 262 (405)
Q Consensus 186 gilt~~dIl~~l~~~~~~~~~~~~~~~~v--~~-i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiv 262 (405)
.-++..++..+-.. .+..++ .. +| ...++++.+++++.++..+|...|++++||++ .|+++|||
T Consensus 169 ~~i~~~~~~~~~~~---------~l~~~Vdl~~~~m---d~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIV 235 (250)
T 2d4z_A 169 EMLTLEEIYRWEQR---------EKNVVVNFETCRI---DQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVV 235 (250)
T ss_dssp SCCBHHHHHHHHHH---------HTTCBCCTTSSCE---ECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEE
T ss_pred cccChhhhhhHHHH---------hcCceeccccccc---cCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEE
Confidence 01444554433221 122333 22 34 37889999999999999999999999999998 69999999
Q ss_pred eHHHHHHHHHh
Q psy744 263 AKFDVINLAAE 273 (405)
Q Consensus 263 t~~Dl~~~~~~ 273 (405)
|.+||++++..
T Consensus 236 TrkDl~kai~~ 246 (250)
T 2d4z_A 236 ALAEIQAAIEG 246 (250)
T ss_dssp EHHHHHHHHHC
T ss_pred EHHHHHHHHHH
Confidence 99999998764
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-14 Score=119.89 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=103.4
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeC-CCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDS-VHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~-~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
...++.|+| +.+++++++++++.+|++.|.+++++++||+|+ +.++++|++|..|++..+....... ..
T Consensus 11 ~~~~v~dim--~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~------~~-- 80 (164)
T 2pfi_A 11 HHVRVEHFM--NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR------AP-- 80 (164)
T ss_dssp CSCBHHHHC--BCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------------
T ss_pred cCCCHHHHc--CCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc------CC--
Confidence 456888999 557899999999999999999999999999996 2389999999999997664321000 00
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccc---cCCeeEEcCCCCHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGT---YENVETVAEETSIIHAL 238 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~v~~~~~l~~a~ 238 (405)
....++.++|... ...+.++.+++++.+++
T Consensus 81 -----------------------------------------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~ 113 (164)
T 2pfi_A 81 -----------------------------------------------GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQ 113 (164)
T ss_dssp -----------------------------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHH
T ss_pred -----------------------------------------------cccchhhhhhcccccccCCceEECCCCcHHHHH
Confidence 0011333333210 01268899999999999
Q ss_pred HHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 239 RKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 239 ~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+.|.+++.+++||+| +|+++|+||..|+++++.+.
T Consensus 114 ~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~ 148 (164)
T 2pfi_A 114 NLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNL 148 (164)
T ss_dssp HHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhh
Confidence 999999999999999 79999999999999987654
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=142.32 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=104.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLER-----RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~ 285 (405)
..+++++|. +++++++++.++.++++.|.++ +++++||+|++++++|+++.+|++... .+.++.+
T Consensus 154 ~~~v~~iM~---~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~-------~~~~v~d 223 (473)
T 2zy9_A 154 EDEAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD-------PRTRVAE 223 (473)
T ss_dssp TTBSTTTCB---SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC-------TTSBGGG
T ss_pred CCCHHHhCC---CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC-------CCCcHHH
Confidence 457888884 7899999999999999999986 478999999889999999999998631 1334444
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
+ |.+++.++++++++.++++.|.+++.+.+||||++|+++|+||.+|+++.+..+
T Consensus 224 i------m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 224 I------MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp T------SBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred H------hCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence 4 667899999999999999999999999999999999999999999999998753
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=122.90 Aligned_cols=133 Identities=11% Similarity=0.165 Sum_probs=107.3
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
+...++.|+|....++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+.... ...
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~---~~~------- 79 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLE---RIE------- 79 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSS---SBC-------
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhc---ccc-------
Confidence 3467888898432378999999999999999999999999999987 89999999999986653210 000
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
.......++.++|. +++.++.+++++.++++.|
T Consensus 80 --------------------------------------------~~~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~m 112 (159)
T 1yav_A 80 --------------------------------------------FEKLDQITVEEVML---TDIPRLHINDPIMKGFGMV 112 (159)
T ss_dssp --------------------------------------------GGGTTTSBHHHHSB---CSCCEEETTSBHHHHHHHT
T ss_pred --------------------------------------------hhhhccCCHHHhcC---CCCceEcCCCCHHHHHHHH
Confidence 00112446778873 6889999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.++++ +||+|++|+++|+||..|+++.+...
T Consensus 113 ~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~ 143 (159)
T 1yav_A 113 INNGF--VCVENDEQVFEGIFTRRVVLKELNKH 143 (159)
T ss_dssp TTCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred HhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence 98876 99999889999999999999987654
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-15 Score=153.59 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=105.2
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHH-hcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc-----------
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFL-ERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT----------- 277 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~----------- 277 (405)
.+.+++++|... +++.++++++++.|+.+.|. +++++.+||+|++|+++|+|+.+|+++.+......
T Consensus 451 ~~~~V~diM~p~-~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~ 529 (632)
T 3org_A 451 PEMTAREIMHPI-EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL 529 (632)
T ss_dssp TTSBHHHHCBCT-TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC--------------
T ss_pred ccCcHHHHhhcC-CCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence 345788998311 68899999999999999999 79999999999999999999999998876443100
Q ss_pred ------chhhhHHHh-----------------------hhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q psy744 278 ------NLDVTLKEA-----------------------NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD 328 (405)
Q Consensus 278 ------~l~~~v~~~-----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 328 (405)
.+...+... -.+.+.|.+++.++++++++.++++.|.+++++++||+ |+|
T Consensus 530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G 608 (632)
T 3org_A 530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG 608 (632)
T ss_dssp -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence 000000000 01445788999999999999999999999999999999 689
Q ss_pred cEEEEEeHHHHHHHHH
Q psy744 329 HVLGVLSLSDILVYLV 344 (405)
Q Consensus 329 ~lvGiIt~~DIl~~l~ 344 (405)
+++||||++||++++.
T Consensus 609 ~lvGIVT~~Dll~~~~ 624 (632)
T 3org_A 609 KLVGIVEREDVAYGYS 624 (632)
T ss_dssp EEEEEEEGGGTEECCC
T ss_pred EEEEEEehhhHHHHHh
Confidence 9999999999988765
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=138.38 Aligned_cols=112 Identities=16% Similarity=0.263 Sum_probs=100.8
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCcc-Cce
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFE-GVE 298 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~-~~~ 298 (405)
..+++++.+++++.+++++|.+++++++||+|+ +++++|+||.+|++. ....+.++.++ |.+ +++
T Consensus 120 ~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------~~~~~~~V~~v------M~~~~~v 187 (511)
T 3usb_A 120 ISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------IQDYSIKISDV------MTKEQLI 187 (511)
T ss_dssp SSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------CCCSSSBHHHH------CCCCCCC
T ss_pred ccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------hccCCCcHHHh------cccCCCE
Confidence 368899999999999999999999999999998 899999999999964 12335667776 445 889
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 299 KCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 299 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..
T Consensus 188 tv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 188 TAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp CEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999975
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=127.59 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=109.3
Q ss_pred chhHHHHHHhh--hcccccccCCCCCeEEEeCCccHHHHHHHHHHc-----CCceeeeEeCCCCeeeeEEeHHHHHHHHH
Q psy744 73 GGNQIFVKFFK--FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYN-----GIRAAPLWDSVHQQYVGMLTITDFIKILQ 145 (405)
Q Consensus 73 ~~~~~~~~~l~--~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~-----~i~~~PV~d~~~~~~~GilT~~Dil~~l~ 145 (405)
.+...+++.+. ..++.++| +.+++++.++.++.+|++.|.++ ++..+||+|++ ++++|++|..|++..
T Consensus 123 ~e~~~i~~ll~~~~~~v~~iM--~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~~-- 197 (286)
T 2oux_A 123 EEAGEIKELLHYEDETAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVN-- 197 (286)
T ss_dssp HHHHHHHHHTTSCTTBHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTS--
T ss_pred HHHHHHHHHhcCChHHHHHhC--CCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHcC--
Confidence 34455555543 34788899 56899999999999999999998 78889999987 899999999998731
Q ss_pred HhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCe
Q psy744 146 MYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENV 225 (405)
Q Consensus 146 ~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 225 (405)
. ...+++++| .+++
T Consensus 198 ----~-----------------------------------------------------------~~~~v~~im---~~~~ 211 (286)
T 2oux_A 198 ----D-----------------------------------------------------------DDTLIADIL---NERV 211 (286)
T ss_dssp ----C-----------------------------------------------------------TTSBHHHHS---BSCC
T ss_pred ----C-----------------------------------------------------------CCCcHHHHc---CCCC
Confidence 0 023566777 3678
Q ss_pred eEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 226 ETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 226 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++++++++.++++.|.+++.+++||+|++|+++|+||..|++..+.+.
T Consensus 212 ~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 212 ISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp CCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=122.95 Aligned_cols=120 Identities=20% Similarity=0.254 Sum_probs=102.6
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHc-----CCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYN-----GIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEEL 158 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~-----~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l 158 (405)
..++.++| +.+++++.++.++.+|++.|.++ ++..+||+|.+ ++++|++|..|++.. .
T Consensus 134 ~~~v~~iM--~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~------~-------- 196 (278)
T 2yvy_A 134 EDEAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA------D-------- 196 (278)
T ss_dssp TTBGGGTC--BSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHS------C--------
T ss_pred cchHHhhc--CCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcC------C--------
Confidence 45788999 45899999999999999999998 78999999987 899999999998731 0
Q ss_pred hhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHH
Q psy744 159 EEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHAL 238 (405)
Q Consensus 159 ~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~ 238 (405)
...+++++| .++++++++++++.+++
T Consensus 197 ---------------------------------------------------~~~~v~~im---~~~~~~v~~~~~l~~a~ 222 (278)
T 2yvy_A 197 ---------------------------------------------------PRTRVAEIM---NPKVVYVRTDTDQEEVA 222 (278)
T ss_dssp ---------------------------------------------------TTCBSTTTS---BSSCCCEETTSBHHHHH
T ss_pred ---------------------------------------------------CCCcHHHHh---CCCCeEEeCCCCHHHHH
Confidence 023677777 37889999999999999
Q ss_pred HHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 239 RKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 239 ~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+.|.+++.+.+||+|++|+++|+||..|++..+.+.
T Consensus 223 ~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 223 RLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp HHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC---
T ss_pred HHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence 999999999999999999999999999999887654
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=138.59 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=87.8
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
..+++|. .+++++.+++++.+++++|.+++++++||+|++++++|+||.+|++.. ...+.++.++
T Consensus 90 ~~~~~m~---~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------~~~~~~v~di------ 154 (496)
T 4fxs_A 90 IFEAGVV---THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV------TDLTKSVAAV------ 154 (496)
T ss_dssp HCCC--C---BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------CCTTSBGGGT------
T ss_pred ccccccc---cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------ccCCCcHHHH------
Confidence 4455663 788999999999999999999999999999999999999999999621 1234445554
Q ss_pred Cc-c-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 293 WF-E-GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 293 ~~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|. . +++++++++++.++++.|.+++++.+||||++|+++|+||..||++...
T Consensus 155 M~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 155 MTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES 208 (496)
T ss_dssp SEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred hcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence 54 2 5899999999999999999999999999999999999999999999864
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=132.00 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=101.7
Q ss_pred cccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccc
Q psy744 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD--SEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKT 291 (405)
Q Consensus 214 v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~ 291 (405)
++++|. .+++++.+++++.++++.|.+++++.+||+| ++++++|+||.+|++... ..+.++.+
T Consensus 92 ~~~im~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~------~~~~~v~~------ 156 (491)
T 1zfj_A 92 SENGVI---IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------DYNAPISE------ 156 (491)
T ss_dssp HTTTTS---SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS------CSSSBTTT------
T ss_pred HHhcCc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc------cCCCcHHH------
Confidence 456663 6889999999999999999999999999999 789999999999998541 12333444
Q ss_pred cCcc-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 292 DWFE-GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 292 ~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
.|.+ +++++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..
T Consensus 157 im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 157 HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 4666 88999999999999999999999999999999999999999999999874
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=132.73 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=106.5
Q ss_pred hhhcccccccCCCCCeEEEeCC-ccHHHHHHHHHHcCCceeeeEe-CCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHh
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQ-LLVKKAFFALVYNGIRAAPLWD-SVHQQYVGMLTITDFIKILQMYYTSSSITMEELE 159 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~-~~v~~A~~~m~~~~i~~~PV~d-~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~ 159 (405)
+...++.|+| ++++++++++ +++.+|+++|.+++++.+||+| ++ ++++|+||..|+++.+.....
T Consensus 381 l~~~~V~diM--~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-g~lvGiVt~~Dll~~l~~~~~---------- 447 (527)
T 3pc3_A 381 WWSLAIAELE--LPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-GSVLGVVGQETLITQIVSMNR---------- 447 (527)
T ss_dssp TTTSBGGGGC--CCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-CCEEEEEEHHHHHHHHHHHCC----------
T ss_pred ccCCcHHHhC--cCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC-CEEEEEEEHHHHHHHHHhccC----------
Confidence 4467899999 6789999999 9999999999999999999999 44 899999999999977653210
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALR 239 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~ 239 (405)
....+++++| .++++++.+++++.++++
T Consensus 448 -------------------------------------------------~~~~~V~~im---~~~~~~v~~~~~l~~a~~ 475 (527)
T 3pc3_A 448 -------------------------------------------------QQSDPAIKAL---NKRVIRLNESEILGKLAR 475 (527)
T ss_dssp -------------------------------------------------CTTSBGGGGE---ETTCCEEETTSBHHHHHH
T ss_pred -------------------------------------------------cCCCcHHHHh---cCCCeEECCCCcHHHHHH
Confidence 0134778888 478999999999999999
Q ss_pred HHHhcCCCEEEEECCC----CcEEEEEeHHHHHHHHHhc
Q psy744 240 KFLERRVSALPMTDSE----GHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 240 ~m~~~~~~~lpVvd~~----g~lvGivt~~Dl~~~~~~~ 274 (405)
+|.+++ .+||+|++ |+++|+||..||++.+.+.
T Consensus 476 ~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 476 VLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAAG 512 (527)
T ss_dssp HHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred HHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence 997665 47999984 8999999999999998765
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-14 Score=141.69 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=0.8
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccC--
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSE---GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEG-- 296 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~-- 296 (405)
.++++++.+++++.++++.|.+++++++||+|++ ++++|+||.+|++.. . ...+.++.++ |.++
T Consensus 104 ~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~---~~~~~~V~di------M~~~~~ 172 (503)
T 1me8_A 104 VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L---TQTETKVSDM------MTPFSK 172 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h---ccccCcHHHH------hCCCCC
Confidence 3688999999999999999999999999999987 899999999999864 1 1234455555 5555
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
++++++++++.+++++|.+++++.+||||++|+++|+||.+||++.+....
T Consensus 173 ~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~ 223 (503)
T 1me8_A 173 LVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHN 223 (503)
T ss_dssp -------------------------------------------------CC
T ss_pred CEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhccc
Confidence 899999999999999999999999999999999999999999999987443
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-13 Score=139.79 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=7.1
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
.+.++| .++++++.+++++.++++.|.+++++.+||+|++++++|+||.+|+++.. ..+.++.++
T Consensus 96 ~~~~iM---~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------~~~~~v~~i------ 160 (494)
T 1vrd_A 96 KTENGI---IYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------NLSKKIKDL------ 160 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcC---ccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------CCCCcHHHH------
Confidence 345666 37889999999999999999999999999999889999999999998631 123455554
Q ss_pred Ccc--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 293 WFE--GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 293 ~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
|.+ ++.++++++++.+++++|.+++++.+||||++|+++|+||..||++.+...
T Consensus 161 m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 161 MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp ------------------------------------------------CHHHHTCT
T ss_pred hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence 555 889999999999999999999999999999999999999999999998643
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=124.89 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=107.4
Q ss_pred hHHHHHHhh--hcccccccCCCCCeEEEeCCccHHHHHHHHHHc-----CCceeeeEeCCCCeeeeEEeHHHHHHHHHHh
Q psy744 75 NQIFVKFFK--FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYN-----GIRAAPLWDSVHQQYVGMLTITDFIKILQMY 147 (405)
Q Consensus 75 ~~~~~~~l~--~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~-----~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~ 147 (405)
.+.+++.++ ..++.++| +.++++++++.++.+|++.|.++ ++..+||+|++ ++++|++|..|++..
T Consensus 143 ~~~i~~~l~~~~~~v~~iM--~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~---- 215 (473)
T 2zy9_A 143 RAEVEALARYEEDEAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA---- 215 (473)
T ss_dssp HHHHHHHHTSCTTBSTTTC--BSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHS----
T ss_pred HHHHHHHhcCCCCCHHHhC--CCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcC----
Confidence 333444443 34777888 55899999999999999999997 58899999987 899999999998731
Q ss_pred hCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeE
Q psy744 148 YTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227 (405)
Q Consensus 148 ~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 227 (405)
. .+.+++++| .+++++
T Consensus 216 --~-----------------------------------------------------------~~~~v~dim---~~~~~~ 231 (473)
T 2zy9_A 216 --D-----------------------------------------------------------PRTRVAEIM---NPKVVY 231 (473)
T ss_dssp --C-----------------------------------------------------------TTSBGGGTS---BSSCCC
T ss_pred --C-----------------------------------------------------------CCCcHHHHh---CCCCeE
Confidence 0 033677888 378999
Q ss_pred EcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 228 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++++++.++++.|.+++...+||+|++|+++|+||.+|+++.+.+.
T Consensus 232 v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 232 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp EESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred EeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999887654
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-13 Score=138.35 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=2.6
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
.++++|. .+++++.+++++.+++++|.+++++++||+| +++++|+||.+|+.... ..+.++.++
T Consensus 89 ~~~~~m~---~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~------~~~~~V~~v------ 152 (490)
T 4avf_A 89 KHETAIV---RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKP------NAGDTVAAI------ 152 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCcc---cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhcc------ccCCcHHHH------
Confidence 4566663 7889999999999999999999999999999 89999999999996321 224455555
Q ss_pred Cc-c-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 293 WF-E-GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 293 ~~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|. + +++++++++++.+++++|.+++++.+||||++|+++|+||+.||++....
T Consensus 153 Mtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 153 MTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp ------------------------------------------------------C
T ss_pred hccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccC
Confidence 54 3 68999999999999999999999999999999999999999999998753
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-13 Score=135.24 Aligned_cols=165 Identities=14% Similarity=0.083 Sum_probs=25.5
Q ss_pred HHhhhcccccc-cCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHH
Q psy744 80 KFFKFHKCYDL-IPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITME 156 (405)
Q Consensus 80 ~~l~~~~~~d~-~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~ 156 (405)
+++...+.+++ | ..++++++++.++.+|+++|.++++..+||+|++ .++++|+||..|+... .
T Consensus 91 ~~v~~V~~~e~gM--~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~----------- 156 (503)
T 1me8_A 91 AMVHAVKNFKAGF--VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-L----------- 156 (503)
T ss_dssp HHHHHHHTTTC---------------------------------------------------------------------
T ss_pred HHHhhhhhcccCc--ccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-h-----------
Confidence 34445566676 7 4589999999999999999999999999999974 2689999999998732 0
Q ss_pred HHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCC--eeEEcCCCCH
Q psy744 157 ELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN--VETVAEETSI 234 (405)
Q Consensus 157 ~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~v~~~~~l 234 (405)
. ....+++++|. ++ ++++++++++
T Consensus 157 --~-------------------------------------------------~~~~~V~diM~---~~~~~~tv~~~~sl 182 (503)
T 1me8_A 157 --T-------------------------------------------------QTETKVSDMMT---PFSKLVTAHQDTKL 182 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --c-------------------------------------------------cccCcHHHHhC---CCCCCEEEcCCCcH
Confidence 0 01235667773 44 8999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHH
Q psy744 235 IHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIV 314 (405)
Q Consensus 235 ~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~ 314 (405)
.+++++|.+++++.+||+|++|+++|+||.+||++........ ..... ..+ ....+.. ....+.++.|.
T Consensus 183 ~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~--~d~~~------~l~--v~a~v~~-~~~~e~~~~l~ 251 (503)
T 1me8_A 183 SEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNEL--VDSQK------RYL--VGAGINT-RDFRERVPALV 251 (503)
T ss_dssp ---------------------------------------CCCC--BCTTS------CBC--CEEEECS-SSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccch--hcccc------ccc--cccccCc-hhHHHHHHHHH
Confidence 9999999999999999999999999999999999887644210 00000 001 1123444 66667788888
Q ss_pred HcCCCEEEE
Q psy744 315 RAEVHRLVV 323 (405)
Q Consensus 315 ~~~~~~lpV 323 (405)
+.+++.+.|
T Consensus 252 e~gv~~l~V 260 (503)
T 1me8_A 252 EAGADVLCI 260 (503)
T ss_dssp HHTCSEEEE
T ss_pred hhhccceEE
Confidence 989987665
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-13 Score=135.84 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCce
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVE 298 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~ 298 (405)
..+++++.|+.++.+++++|.+++++.+||+|+ +++++||||.+|+... +.+.++.++ |+++++
T Consensus 145 i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-------d~~~~V~ev------MT~~lv 211 (556)
T 4af0_A 145 ITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-------DAETPIKSV------MTTEVV 211 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-------ccceEhhhh------cccceE
Confidence 378999999999999999999999999999986 5899999999998542 234556665 667899
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 299 KCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 299 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+++++.++.+|.++|.++++..|||||++|+|+|+||..||++.-.
T Consensus 212 t~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 212 TGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN 257 (556)
T ss_dssp ----------------------------------------------
T ss_pred EecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence 9999999999999999999999999999999999999999998664
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-11 Score=120.98 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=121.1
Q ss_pred cccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeC--CCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 87 CYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDS--VHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 87 ~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~--~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
..+.| ..++++++++.++.+|+++|.++++..+||+|+ + ++++|+||..|+.. ...
T Consensus 115 ~~~~m--~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-~~lvGiVt~rDl~~-----~~~-------------- 172 (511)
T 3usb_A 115 SESGV--ISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-RKLVGIITNRDMRF-----IQD-------------- 172 (511)
T ss_dssp SSSCS--SSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-CBEEEEEEHHHHTT-----CCC--------------
T ss_pred ccccc--ccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-CEEEEEEEehHhhh-----hcc--------------
Confidence 44555 457889999999999999999999999999997 5 89999999999862 000
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccC-CeeEEcCCCCHHHHHHHHHh
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE-NVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~~l~~a~~~m~~ 243 (405)
...+++++|. + ++++++++.++.++++.|.+
T Consensus 173 ---------------------------------------------~~~~V~~vM~---~~~~vtv~~~~~l~eal~~m~~ 204 (511)
T 3usb_A 173 ---------------------------------------------YSIKISDVMT---KEQLITAPVGTTLSEAEKILQK 204 (511)
T ss_dssp ---------------------------------------------SSSBHHHHCC---CCCCCCEETTCCHHHHHHHHHH
T ss_pred ---------------------------------------------CCCcHHHhcc---cCCCEEECCCCCHHHHHHHHHH
Confidence 1346777773 4 88999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCc--eEecCCCCHHHHHHHHHHcCCCEE
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGV--EKCLLDETLFTVMERIVRAEVHRL 321 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~--~~v~~~~~l~~a~~~m~~~~~~~l 321 (405)
++++.+||+|++|+++|+||.+|+++........ . +.+.+.. ..+.......+.++.+.+.++..+
T Consensus 205 ~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~------~------D~~~rl~V~aavg~~~d~~era~aLveaGvd~I 272 (511)
T 3usb_A 205 YKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSA------K------DKQGRLLVGAAVGVTADAMTRIDALVKASVDAI 272 (511)
T ss_dssp HTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCC------B------CTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred cCCCEEEEEeCCCCEeeeccHHHHHHhhhcccch------h------hhccceeeeeeeeeccchHHHHHHHHhhccceE
Confidence 9999999999999999999999999987653100 0 0011111 233444445666777888888877
Q ss_pred EEEcCCC
Q psy744 322 VVVDEDD 328 (405)
Q Consensus 322 pVvd~~g 328 (405)
.|-..++
T Consensus 273 ~Id~a~g 279 (511)
T 3usb_A 273 VLDTAHG 279 (511)
T ss_dssp EEECSCT
T ss_pred Eeccccc
Confidence 7754443
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-12 Score=132.85 Aligned_cols=172 Identities=12% Similarity=-0.018 Sum_probs=105.5
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHH-HcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALV-YNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~-~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
...++.|+|...++++++++++++.++.+.|. +++++++||+|++ ++++|++|..|+.+.+.................
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~ 529 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL 529 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC--------------
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence 56789999954478999999999999999999 7999999999986 899999999999976543211110000000000
Q ss_pred c-HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 162 K-LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 162 ~-i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
. .........++.+.-. ......+..+.++.... ....+++++| .++++++++++++.++++.
T Consensus 530 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~e~~~~~~------------~~~~~v~~iM---t~~pitV~~~~~l~ea~~~ 593 (632)
T 3org_A 530 VLLDAADLSENIEGLVDE-TPSGEHSSKGKRTATVL------------EPTSSLVVPC---DVSPIVVTSYSLVRQLHFL 593 (632)
T ss_dssp ------------------------------------------------------CCSC---CCCCCEEETTCBHHHHHHH
T ss_pred eccCHHHHHhhcccCCCC-CcccchhhhcccceEee------------ccccccchhh---cCCCceecCCCcHHHHHHH
Confidence 0 0000000000000000 00000000000000000 0112477888 4889999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
|.+++++++||+ ++|+++|+||.+|+++...
T Consensus 594 M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~ 624 (632)
T 3org_A 594 FVMLMPSMIYVT-ERGKLVGIVEREDVAYGYS 624 (632)
T ss_dssp HHHTCCSEEEEE-ETTEEEEEEEGGGTEECCC
T ss_pred HHhcCCCEEEEE-ECCEEEEEEehhhHHHHHh
Confidence 999999999999 6899999999999976543
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-13 Score=138.27 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=77.8
Q ss_pred eHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHH
Q psy744 189 THKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKF 265 (405)
Q Consensus 189 t~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~ 265 (405)
|+.++..++.. -.++.++|. ++++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+
T Consensus 96 t~e~~~~~v~~-----------v~~~~~im~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~ 161 (514)
T 1jcn_A 96 TPEFQANEVRK-----------VKNFEQGFI---TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSR 161 (514)
T ss_dssp CHHHHHHHHHH-----------HHTCCTTSC---SSCCCCCC-----------------CEESCC--------CCEECTT
T ss_pred CHHHHHHHHHh-----------hhhhhhccc---cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHH
Confidence 67777766532 125667774 67889999999999999999999999999997 58999999999
Q ss_pred HHHHHHHhccccchhhhHHHhhhccccCcc--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 266 DVINLAAEKTYTNLDVTLKEANEHKTDWFE--GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 266 Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
|+...... ....++.++ |.+ ++.++++++++.+++++|.+++.+.+||||++|+++|+||++||++.+
T Consensus 162 Dl~~~~~~----~~~~~v~~v------m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 162 DIDFLAEK----DHTTLLSEV------MTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp TTC--------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred HHHhhhhc----cCCCCHHHH------hCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 99764210 123445554 556 889999999999999999999999999999999999999999999877
Q ss_pred H
Q psy744 344 V 344 (405)
Q Consensus 344 ~ 344 (405)
.
T Consensus 232 ~ 232 (514)
T 1jcn_A 232 D 232 (514)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-12 Score=128.62 Aligned_cols=107 Identities=22% Similarity=0.329 Sum_probs=0.5
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.+++++.+++++.++++.|.+++++.+||+|+ ++++|+|+.+|++. . .+.++.++ |.+++.++++
T Consensus 101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~---~-----~~~~v~~i------m~~~~~~v~~ 165 (486)
T 2cu0_A 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA---R-----EGKLVKEL------MTKEVITVPE 165 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc---C-----CCCCHHHH------ccCCCeEECC
Confidence 68899999999999999999999999999997 99999999999975 1 13344444 5568889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
++++.++++.|.+++++.+||||++|+++|+||.+||++.+.
T Consensus 166 ~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 166 SIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp -----------------------------------------C
T ss_pred cCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 999999999999999999999999999999999999999864
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=110.33 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=100.9
Q ss_pred ccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEe--CCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 88 YDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWD--SVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 88 ~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d--~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
.|+| ..++++++++.++.+|++.|.++++..+||+| ++ ++++|++|..|++.. ..
T Consensus 93 ~~im--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-~~lvGivt~~Dl~~~-----~~--------------- 149 (491)
T 1zfj_A 93 ENGV--IIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-RKLVGIITNRDMRFI-----SD--------------- 149 (491)
T ss_dssp TTTT--SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-CBEEEEEEHHHHHHC-----SC---------------
T ss_pred HhcC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-CEEEEEEEHHHHhhh-----cc---------------
Confidence 5777 55889999999999999999999999999999 55 899999999998732 00
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccC-CeeEEcCCCCHHHHHHHHHhc
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE-NVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~~l~~a~~~m~~~ 244 (405)
...+++++|. + +++++++++++.++++.|.++
T Consensus 150 --------------------------------------------~~~~v~~im~---~~~~~~v~~~~~l~~a~~~m~~~ 182 (491)
T 1zfj_A 150 --------------------------------------------YNAPISEHMT---SEHLVTAAVGTDLETAERILHEH 182 (491)
T ss_dssp --------------------------------------------SSSBTTTSCC---CSCCCCEETTCCHHHHHHHHHHT
T ss_pred --------------------------------------------CCCcHHHHcC---CCCCEEECCCCCHHHHHHHHHHc
Confidence 0336777773 4 788999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+.+.+||+|++|+++|++|..|+++....
T Consensus 183 ~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 183 RIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp TCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred CCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 99999999999999999999999998874
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-11 Score=119.37 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=87.6
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
+..++| ..++++++++.++.+|+++|.++++..+||+|++ ++++|+||..|+.. ..
T Consensus 90 ~~~~~m--~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-~~lvGiVt~rDL~~------~~--------------- 145 (496)
T 4fxs_A 90 IFEAGV--VTHPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-NELVGIITGRDVRF------VT--------------- 145 (496)
T ss_dssp HCCC----CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-SBEEEEEEHHHHTT------CC---------------
T ss_pred cccccc--ccCceEECCCCCHHHHHHHHHHcCCcEEEEEccC-CEEEEEEEHHHHhh------cc---------------
Confidence 446677 4678999999999999999999999999999986 89999999999860 00
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
....++.++|.. ..++++++++.++.+++++|.+++
T Consensus 146 -------------------------------------------~~~~~v~diM~p-~~~~vtv~~~~~l~ea~~~m~~~~ 181 (496)
T 4fxs_A 146 -------------------------------------------DLTKSVAAVMTP-KERLATVKEGATGAEVQEKMHKAR 181 (496)
T ss_dssp -------------------------------------------CTTSBGGGTSEE-GGGCCEEECC----CGGGTCC---
T ss_pred -------------------------------------------cCCCcHHHHhcC-CCCCEEECCCCCHHHHHHHHHHcC
Confidence 013367787720 026899999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+..+||+|++|+++|+||.+|+++...
T Consensus 182 i~~lpVVDe~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 182 VEKILVVNDEFQLKGMITAKDFHKAES 208 (496)
T ss_dssp CCCEEEECTTSBCCEEECCC-----CC
T ss_pred CCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence 999999999999999999999998653
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.8e-11 Score=119.72 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=3.0
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
.+..++| ..++++++++.++.+|+++|.++++..+||+| + ++++|++|..|+.... .
T Consensus 88 k~~~~~m--~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-g~lvGIVt~rDl~~~~-----~-------------- 144 (490)
T 4avf_A 88 KKHETAI--VRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-GELVGIVTGRDLRVKP-----N-------------- 144 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCc--ccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEhHHhhhcc-----c--------------
Confidence 3567777 46789999999999999999999999999999 4 8999999999985110 0
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
...+++++|.. ..+++++++++++.+++++|.++
T Consensus 145 ---------------------------------------------~~~~V~~vMtp-~~~~vtv~~~~~l~ea~~~m~~~ 178 (490)
T 4avf_A 145 ---------------------------------------------AGDTVAAIMTP-KDKLVTAREGTPLEEMKAKLYEN 178 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------cCCcHHHHhcc-CCCCEEECCCCcHHHHHHHHHHc
Confidence 02356677720 01689999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+++.+||+|++|+++|+||.+|+++...
T Consensus 179 ~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 179 RIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp ----------------------------
T ss_pred CCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 9999999999999999999999998764
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-11 Score=120.26 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=6.8
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
+..|+| ..++++++++.++.+|++.|.++++..+||+|++ ++++|+||..|+... . +
T Consensus 96 ~~~~iM--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~-~-----------~-------- 152 (494)
T 1vrd_A 96 KTENGI--IYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE-K-----------N-------- 152 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcC--ccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh-c-----------C--------
Confidence 456788 5689999999999999999999999999999986 899999999998731 0 0
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccC--CeeEEcCCCCHHHHHHHHHh
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE--NVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~v~~~~~l~~a~~~m~~ 243 (405)
...++.++|. + +++++.+++++.+++++|.+
T Consensus 153 --------------------------------------------~~~~v~~im~---~~~~~~~v~~~~~l~ea~~~m~~ 185 (494)
T 1vrd_A 153 --------------------------------------------LSKKIKDLMT---PREKLIVAPPDISLEKAKEILHQ 185 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------CCCcHHHHhC---CCCCCeEECCCCCHHHHHHHHHH
Confidence 0225666663 4 78999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++..+||+|++|+++|+||..|+++.....
T Consensus 186 ~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 186 HRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp -----------------------CHHHHTCT
T ss_pred cCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence 9999999999999999999999999987543
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=83.18 Aligned_cols=70 Identities=9% Similarity=0.154 Sum_probs=56.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEe
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKC 300 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v 300 (405)
+++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+.....+..+.+++++ |+++++++
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~i------Mt~~~iTV 70 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEI------MTKNPVKI 70 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGT------CEECTTCC
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHh------cCCCCeEC
Confidence 368999999999999999999999999998 58999999999998776554343345556665 66776653
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-11 Score=117.61 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
+.+++.++.+|.+|+++|.++++..+||+|+. .++++||+|.+|+.- .
T Consensus 147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf--~---------------------------- 196 (556)
T 4af0_A 147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF--Q---------------------------- 196 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc--c----------------------------
Confidence 46888888888888888888888888888762 257777777777540 0
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
-...+++++| .+++++++.+.++.+|.++|.++++..+||||
T Consensus 197 -----------------------------------d~~~~V~evM---T~~lvt~~~~~~leeA~~iL~~~kieklpVVd 238 (556)
T 4af0_A 197 -----------------------------------DAETPIKSVM---TTEVVTGSSPITLEKANSLLRETKKGKLPIVD 238 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------ccceEhhhhc---ccceEEecCCCCHHHHHHHHHHccccceeEEc
Confidence 0134677888 36799999999999999999999999999999
Q ss_pred CCCcEEEEEeHHHHHHHHH
Q psy744 254 SEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~~~~ 272 (405)
++|+++|+||.+|+.+...
T Consensus 239 ~~g~LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 239 SNGHLVSLVARSDLLKNQN 257 (556)
T ss_dssp -------------------
T ss_pred cCCcEEEEEEechhhhhhh
Confidence 9999999999999987553
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-10 Score=114.09 Aligned_cols=163 Identities=23% Similarity=0.329 Sum_probs=22.9
Q ss_pred ccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHH
Q psy744 88 YDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNL 167 (405)
Q Consensus 88 ~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l 167 (405)
.|.| ..++++++++.++.+|++.|.++++..+||+|+ ++++|++|..|++. . +
T Consensus 96 ~~~m--~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~---~----~---------------- 148 (486)
T 2cu0_A 96 ERLI--VEDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA---R----E---------------- 148 (486)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhcc--ccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc---C----C----------------
Confidence 4566 468999999999999999999999999999997 79999999999873 0 0
Q ss_pred HhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCC
Q psy744 168 IDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVS 247 (405)
Q Consensus 168 ~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~ 247 (405)
..++.++| .++++++++++++.++++.|.+++++
T Consensus 149 -------------------------------------------~~~v~~im---~~~~~~v~~~~~l~eal~~m~~~~~~ 182 (486)
T 2cu0_A 149 -------------------------------------------GKLVKELM---TKEVITVPESIEVEEALKIMIENRID 182 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------CCCHHHHc---cCCCeEECCcCcHHHHHHHHHHcCCC
Confidence 12455566 25788999999999999999999999
Q ss_pred EEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q psy744 248 ALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED 327 (405)
Q Consensus 248 ~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 327 (405)
.+||+|++|+++|++|.+|+++....... ..+.. ...+.. ..+..++ .+.+..|.+.++..+.|-...
T Consensus 183 ~lpVVde~g~lvGiiT~~Dil~~~~~~~~------~~~~~--g~~~v~--~~~~~~~--~~~a~~l~~~gvd~lvvdta~ 250 (486)
T 2cu0_A 183 RLPVVDERGKLVGLITMSDLVARKKYKNA------VRDEN--GELLVA--AAVSPFD--IKRAIELDKAGVDVIVVDTAH 250 (486)
T ss_dssp ------------------------CCTTC------CBCTT--SCBCCE--EEECTTC--HHHHHHHHHTTCSEEEEECSC
T ss_pred EEEEEecCCeEEEEEEHHHHHHhhhcccc------ccccC--Cceeec--ceechhh--HHHHHHHHHhcCCceEEEecC
Confidence 99999999999999999999987542110 00000 000111 1233333 566778889999876443334
Q ss_pred CcEEEEEe
Q psy744 328 DHVLGVLS 335 (405)
Q Consensus 328 g~lvGiIt 335 (405)
|...++++
T Consensus 251 G~~~~~L~ 258 (486)
T 2cu0_A 251 AHNLKAIK 258 (486)
T ss_dssp CCCHHHHH
T ss_pred CcEeehhh
Confidence 55544443
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.9e-11 Score=119.11 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=70.0
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
.++.|+| ..+++++.++.++.+|+++|.+++++.+||+|+. .++++|++|..|+..... .
T Consensus 108 ~~~~~im--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~-------------~--- 169 (514)
T 1jcn_A 108 KNFEQGF--ITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE-------------K--- 169 (514)
T ss_dssp HTCCTTS--CSSCCCCCC-----------------CEESCC--------CCEECTTTTC---------------------
T ss_pred hhhhhcc--ccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh-------------c---
Confidence 3677888 4578899999999999999999999999999973 389999999998863210 0
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccC--CeeEEcCCCCHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE--NVETVAEETSIIHALRK 240 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~v~~~~~l~~a~~~ 240 (405)
....++.++|. + +++++.+++++.+++++
T Consensus 170 ----------------------------------------------~~~~~v~~vm~---~~~~~~tv~~~~~l~ea~~~ 200 (514)
T 1jcn_A 170 ----------------------------------------------DHTTLLSEVMT---PRIELVVAPAGVTLKEANEI 200 (514)
T ss_dssp ------------------------------------------------------------CCBCCCCEETTCCSTTTTTH
T ss_pred ----------------------------------------------cCCCCHHHHhC---CCCCCeEECCCCCHHHHHHH
Confidence 00235666763 4 78999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
|.+++...+||+|++|+++|+||.+|+++.+.
T Consensus 201 m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 201 LQRSKKGKLPIVNDCDELVAIIARTDLKKNRD 232 (514)
T ss_dssp HHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred HHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence 99999999999999999999999999987653
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=74.19 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=44.7
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
++++++++++.+|+++|.+++++++||+| +|+++||||.+||++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence 57899999999999999999999999998 6999999999999988764
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=92.03 Aligned_cols=174 Identities=17% Similarity=0.208 Sum_probs=106.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch----hhhHHHh
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL----DVTLKEA 286 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l----~~~v~~~ 286 (405)
..+++++| .++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+........ ..++.++
T Consensus 6 ~~~v~~im---~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v 82 (245)
T 3l2b_A 6 KLKVEDLE---MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNI 82 (245)
T ss_dssp CCBGGGSC---CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred cCcHHHhc---CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence 45899999 4788999999999999999999999999999999999999999999998765321110 0111111
Q ss_pred hh-----------------------------ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC----------
Q psy744 287 NE-----------------------------HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED---------- 327 (405)
Q Consensus 287 ~~-----------------------------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------- 327 (405)
.. ..+.+..+.+.+-.+ -.++.+.+.+.++..+++++..
T Consensus 83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 11 001111222222222 3788889999999998887531
Q ss_pred --CcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCCCcCCcccccccCCccccccccCccccccccc
Q psy744 328 --DHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDLASSDDKVFEENEEPRDYVQNSCWGEVPVSD 399 (405)
Q Consensus 328 --g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (405)
+.+-.+.|..|.......-.... ..+..|.+ ..+...+....+ .+..+++.+.++..+||+|
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~~~~~---~v~~im~~---~~~~~~~~~~~~----~~~~~~m~~~~~~~~pVvd 224 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLIVQSL---PVDYVMTK---DNLVAVSTDDLV----EDVKVTMSETRYSNYPVID 224 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHGGGGS---BHHHHSBC---TTCCCEETTSBH----HHHHHHHHHHCCSEEEEEC
T ss_pred HHcCCeEEEeCCChHHHHHHHhcCC---ceeeEecC---CccEEECCCCcH----HHHHHHHHhcCCceEEEEc
Confidence 23455666666554432211110 00111211 112222222111 2556677899999999998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 405 | ||||
| d2v8qe1 | 145 | d.37.1.1 (E:182-326) 5'-AMP-activated protein kina | 1e-28 | |
| d2nyca1 | 140 | d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's | 4e-23 | |
| d2nyca1 | 140 | d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's | 1e-05 | |
| d2ooxe2 | 153 | d.37.1.1 (E:182-334) Uncharacterized protein C1556 | 8e-21 | |
| d2v8qe2 | 159 | d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas | 2e-17 | |
| d2v8qe2 | 159 | d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas | 1e-09 | |
| d2ooxe1 | 179 | d.37.1.1 (E:3-181) Uncharacterized protein C1556.0 | 6e-12 | |
| d2ooxe1 | 179 | d.37.1.1 (E:3-181) Uncharacterized protein C1556.0 | 2e-07 | |
| d2rc3a1 | 127 | d.37.1.1 (A:23-149) Uncharacterized protein NE2398 | 1e-10 | |
| d2yzqa1 | 156 | d.37.1.1 (A:123-278) Uncharacterized protein PH178 | 2e-10 | |
| d2yzqa1 | 156 | d.37.1.1 (A:123-278) Uncharacterized protein PH178 | 0.003 | |
| d1pvma4 | 142 | d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar | 6e-10 | |
| d2o16a3 | 139 | d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V | 1e-08 | |
| d1jr1a4 | 120 | d.37.1.1 (A:113-232) Type II inosine monophosphate | 2e-08 | |
| d1jr1a4 | 120 | d.37.1.1 (A:113-232) Type II inosine monophosphate | 0.003 | |
| d2yzia1 | 132 | d.37.1.1 (A:4-135) Uncharacterized protein PH0107 | 6e-08 | |
| d2ef7a1 | 127 | d.37.1.1 (A:1-127) Uncharacterized protein ST2348 | 1e-07 | |
| d1y5ha3 | 123 | d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M | 2e-07 | |
| d1o50a3 | 145 | d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th | 5e-07 | |
| d1pbja3 | 120 | d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A | 5e-07 | |
| d2riha1 | 131 | d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 | 3e-06 | |
| d2yzqa2 | 122 | d.37.1.1 (A:1-122) Uncharacterized protein PH1780 | 3e-06 | |
| d1zfja4 | 126 | d.37.1.1 (A:95-220) Type II inosine monophosphate | 4e-06 | |
| d1vr9a3 | 121 | d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB | 7e-06 | |
| d1vr9a3 | 121 | d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB | 0.003 | |
| d3ddja2 | 135 | d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 | 2e-05 | |
| d3ddja1 | 141 | d.37.1.1 (A:136-276) Uncharacterized protein SSO32 | 3e-05 | |
| d1yava3 | 132 | d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac | 3e-05 | |
| d2yvxa2 | 144 | d.37.1.1 (A:132-275) Magnesium transporter MgtE {T | 6e-05 | |
| d2ouxa2 | 127 | d.37.1.1 (A:136-262) Magnesium transporter MgtE {E | 2e-04 | |
| d2j9la1 | 169 | d.37.1.1 (A:578-746) Chloride channel protein 5, C | 9e-04 | |
| d2d4za3 | 160 | d.37.1.1 (A:527-606,A:691-770) Chloride channel pr | 0.002 |
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 107 bits (267), Expect = 1e-28
Identities = 82/144 (56%), Positives = 108/144 (75%)
Query: 204 LPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFA 263
PKP F++K+L +L+IGTY N+ V T + AL F++ RVSALP+ D +G +VDI++
Sbjct: 1 FPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYS 60
Query: 264 KFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVV 323
KFDVINLAAEKTY NLDV++ +A +H++ +FEGV KC L ETL ++ R+V AEVHRLVV
Sbjct: 61 KFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVV 120
Query: 324 VDEDDHVLGVLSLSDILVYLVLKP 347
VDE D V G++SLSDIL LVL
Sbjct: 121 VDEHDVVKGIVSLSDILQALVLTG 144
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.2 bits (228), Expect = 4e-23
Identities = 50/137 (36%), Positives = 86/137 (62%)
Query: 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
FL + DL I T +N+++ T +I ++ + RVS++P+ D G+L++++ +DV+
Sbjct: 3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 62
Query: 269 NLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD 328
L Y +L +++ EA ++D FEGV C ++ L T+M+ I +A VHR VVD+
Sbjct: 63 GLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 122
Query: 329 HVLGVLSLSDILVYLVL 345
++GVL+LSDIL Y++L
Sbjct: 123 RLVGVLTLSDILKYILL 139
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
L ++ +P+IDE G ++ + +L + S + +E V
Sbjct: 35 LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG--GIYNDLSLSVGEALMRRSDDFEGVY 92
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269
T + + + + RV + D G LV + D++
Sbjct: 93 TCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK 135
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 86.2 bits (212), Expect = 8e-21
Identities = 48/146 (32%), Positives = 87/146 (59%)
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
L + IGT+ N+ T + ET + ++ E+ +SA+P+ +SEG L++++ DV++L +
Sbjct: 3 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 62
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
Y+NLD+++ EA + F+GV C + L + + I + VHRL VVDE+ + G+
Sbjct: 63 GDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGI 122
Query: 334 LSLSDILVYLVLKPSDDDIGVDETSS 359
LSL+DIL Y++ + ++T +
Sbjct: 123 LSLADILNYIIYDKTTTPGVPEQTDN 148
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.8 bits (188), Expect = 2e-17
Identities = 87/157 (55%), Positives = 102/157 (64%), Gaps = 28/157 (17%)
Query: 75 NQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGM 134
+ ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS Q +VGM
Sbjct: 3 SSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGM 62
Query: 135 LTITDFIKILQMYYTSSSITMEELEEH---------------------------KLETNL 167
LTITDFI IL YY S+ + + ELEEH ++L
Sbjct: 63 LTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSL 122
Query: 168 IDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYIND 203
I KIHRLPVID E GN LYILTHKRIL+FL L+I +
Sbjct: 123 IRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 159
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.4 bits (130), Expect = 1e-09
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 207 PSFL-NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAK 264
+F+ + DL T + + A + V A P+ DS+ V +
Sbjct: 7 TTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65
Query: 265 FDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL--------DETLFTVMERIVRA 316
D IN+ + L + W E + + +LF + ++R
Sbjct: 66 TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN 125
Query: 317 EVHRLVVVD-EDDHVLGVLSLSDILVYLVLKPSD 349
++HRL V+D E + L +L+ IL +L L ++
Sbjct: 126 KIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 159
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 61.9 bits (149), Expect = 6e-12
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Query: 65 DFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLW 124
D + +K +I F + YD++PTS +L+VFD L VK + L N I +APLW
Sbjct: 1 DVQETQKGALKEIQ-AFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLW 59
Query: 125 DSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK---------------------- 162
DS ++ G+LT+ DF+ +++ YY SSS E K
Sbjct: 60 DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119
Query: 163 ---------LETNLIDYKIHRLPVIDEMGN-----VLYILTHKRILRFLFLYIND 203
+ + R+P+ID G ++ +LT RIL+F+ + +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE 174
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 48.8 bits (115), Expect = 2e-07
Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 20/161 (12%)
Query: 208 SFL-NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKF 265
+F+ ++T D+ T + + +L + + P+ DSE +
Sbjct: 15 AFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMA 73
Query: 266 DVINLAAEKTYTN------------LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERI 313
D +N+ ++ + L+E +L +
Sbjct: 74 DFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAM 133
Query: 314 VRAEVHRLVVVDEDD-----HVLGVLSLSDILVYLVLKPSD 349
++ R+ ++D D ++ VL+ IL ++ + +
Sbjct: 134 SKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE 174
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Score = 56.7 bits (136), Expect = 1e-10
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
KT++ L V + + S+ +A++K + AL + + LV I + D +
Sbjct: 2 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKS 60
Query: 272 AEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVL 331
D +KE + + L+ T M I V L V+D D V+
Sbjct: 61 YLLDKPVKDTQVKEIMTRQVAY------VDLNNTNEDCMALITEMRVRHLPVLD-DGKVI 113
Query: 332 GVLSLSDILVYLV 344
G+LS+ D++ +
Sbjct: 114 GLLSIGDLVKDAI 126
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 56.6 bits (135), Expect = 2e-10
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 215 RDLKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEG---HLVDIFAKFDVIN 269
+ ++I Y V V E T + AL+ L ALP+ DSEG +VD
Sbjct: 2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSE 61
Query: 270 LAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTV-------------------- 309
+ T L + +E ++ EK L V
Sbjct: 62 IVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEV 121
Query: 310 MERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
++ + + +L V+ + ++G++ D+L LV
Sbjct: 122 ALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 36.1 bits (82), Expect = 0.003
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 21/123 (17%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHK-------------------RILRFLFLYINDLPKP 207
L+ LPV+D GN++ I+ L +
Sbjct: 30 LLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLF 89
Query: 208 SFLNKTLRDLKIGTYEN--VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKF 265
L + + V ++ K + + LP+ EG L+ + F
Sbjct: 90 EKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDF 149
Query: 266 DVI 268
D++
Sbjct: 150 DLL 152
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.9 bits (131), Expect = 6e-10
Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 7/137 (5%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N +TV T++ A++ E + L + D G+ V + ++ +I + +V +
Sbjct: 12 NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPI 71
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+ + V + + R VVD+ V+G+++L+D+ YL
Sbjct: 72 RLVMRKPIPKVKSDYDV------KDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 125
Query: 344 VLKPSDDDIGVDETSSD 360
+ S DI + + D
Sbjct: 126 S-RASITDILLSHRTKD 141
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Score = 51.4 bits (122), Expect = 1e-08
Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 2/122 (1%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+ T+ ++ A + +P+ D+ L+ I ++ D++ +
Sbjct: 11 HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDS 70
Query: 284 KEANEHKTDWFEGVEKCLLDETLFT-VMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342
+ + + + + ++ L VV D ++G+++ SD +
Sbjct: 71 LAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTI 129
Query: 343 LV 344
+
Sbjct: 130 AI 131
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 49.8 bits (118), Expect = 2e-08
Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMT---DSEGHLVDIFAKFDVINLAAEKTYTNLD 280
+ ++ + + +P+T LV I + D+ L E+
Sbjct: 5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDR--- 61
Query: 281 VTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
L+E + D TL E + R++ +L +V+E+D ++ +++ +D+
Sbjct: 62 -FLEEIMTKREDLVVAPA----GITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK 116
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 35.1 bits (80), Expect = 0.003
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
E++ ++ A + LP+ + LV I A+ D+
Sbjct: 71 EDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK 116
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 49.0 bits (116), Expect = 6e-08
Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+ V TS+ A R +E V +L + + +G++V F K D+I
Sbjct: 14 KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVE 73
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
+ + + L V+ ++ + +++ + + ++G+ +LSD+L
Sbjct: 74 RIMTRNLITANV-------NTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLL 122
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Score = 47.9 bits (113), Expect = 1e-07
Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V +V ++ + + E+ + ++ + D V I + D++ +
Sbjct: 13 QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETK--- 68
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+ + D + + + + + L VVD+ ++ G++S+ DI +
Sbjct: 69 -----AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123
Query: 344 V 344
Sbjct: 124 D 124
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.6 bits (112), Expect = 2e-07
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V V E ++ A + E + ALP+ + L + D++ T
Sbjct: 10 GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATA 69
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
E + + ++ + +V R+ V+ + ++G+++ +DI +L
Sbjct: 70 GELARDSIYYVDANASI------QEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL 122
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Score = 46.9 bits (110), Expect = 5e-07
Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
++D+ V E+T I + + LE V+ + LV + ++ ++
Sbjct: 3 VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLD-------ETLFTVMERIVRAEVHRLVVVDE 326
+ + + K + + +LD L ++ ++ + + VVDE
Sbjct: 63 HFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE 122
Query: 327 DDHVLGVLSLSDILVYL 343
++G L+ +IL+ L
Sbjct: 123 KGEIVGDLNSLEILLAL 139
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 46.0 bits (108), Expect = 5e-07
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V+T+ S+ LR ++E + + EG V I +DV+ AE
Sbjct: 9 DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVW 67
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
+ T+ E++V+ V RL+V + DD ++GV+S +DIL
Sbjct: 68 EVMERDLVTISP-------RATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDIL 116
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Score = 44.2 bits (103), Expect = 3e-06
Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTD--SEGHLVDIFAKFDVINLAAEKTYTNLDV 281
++ E +I + + RV +T + V + ++ D++ A++ +
Sbjct: 10 PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPA 69
Query: 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
+ + V E++ R + +VVV+++ ++GVLS+ D+
Sbjct: 70 MPIANSPITVLDTDPVHVAA---------EKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.7 bits (102), Expect = 3e-06
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N T+ + +AL F + +V + P+ + EG LV I +
Sbjct: 10 NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGII-------------SVKRILVN 56
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+ + V ++TL + ++ + R+VVVD +G+L++ DI+
Sbjct: 57 PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY 116
Query: 344 V 344
Sbjct: 117 F 117
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Score = 43.7 bits (102), Expect = 4e-06
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALP--MTDSEGHLVDIFAKFDVINLAAEKTYTNLDV 281
+ + E + A R+S +P T + LV I D+ ++ + +
Sbjct: 6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHM 65
Query: 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
T + L T + + +L +VD + G++++ DI
Sbjct: 66 TSEHLVTAAVGT-----------DLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Score = 42.6 bits (99), Expect = 7e-06
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 15/130 (11%)
Query: 217 LKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+K+ + ++ V E ++ L + + + + + D EGH +
Sbjct: 1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV------------ 48
Query: 275 TYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVL 334
+ L + ++ + + + + L VVDE+ + G +
Sbjct: 49 -NKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAV 107
Query: 335 SLSDILVYLV 344
SL D L L+
Sbjct: 108 SLHDFLEALI 117
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Score = 35.3 bits (80), Expect = 0.003
Identities = 28/142 (19%), Positives = 43/142 (30%), Gaps = 26/142 (18%)
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHK 191
V DF + S T+ E + Y+ + V D G+ ++ +
Sbjct: 3 VKKWVTQDFPMV------EESATVRECLHRMRQ-----YQTNECIVKDREGHFRGVVNKE 51
Query: 192 RILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251
+L V EE +I HAL FLE + LP+
Sbjct: 52 DLLDLDLDSSVF---------------NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPV 96
Query: 252 TDSEGHLVDIFAKFDVINLAAE 273
D E L + D + E
Sbjct: 97 VDEEMRLKGAVSLHDFLEALIE 118
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 13/124 (10%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-------GHLVDIFAKFDVINLAAEKTY 276
N +++E + A +K E + + + + + L+ + + + Y
Sbjct: 10 NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLY 69
Query: 277 TNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
+ + FT + +V L VVD +D +G+++
Sbjct: 70 HISTTPIIDYMTPNPVT------VYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTE 123
Query: 337 SDIL 340
+ L
Sbjct: 124 REFL 127
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 41.5 bits (96), Expect = 3e-05
Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V+T+ +E + A++ L R LP+ D + +V I + I A+
Sbjct: 11 KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYF 70
Query: 284 KE--ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341
+ +++ M + + L+++++D+ + G+++ D+L+
Sbjct: 71 YGKVVKDVMVTNLVTIDELASVNRAAAEM---IVKRIGSLLILNKDNTIRGIITERDLLI 127
Query: 342 YLV 344
L
Sbjct: 128 ALH 130
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Score = 41.2 bits (95), Expect = 3e-05
Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 5/132 (3%)
Query: 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
T+ I + V V ++ HAL + +A+P+ D L + ++N
Sbjct: 2 ATVGQFMI-EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSI 60
Query: 272 AEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVL 331
+ ++ + + L + + + V +++
Sbjct: 61 FGLERIEFEKL----DQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFE 116
Query: 332 GVLSLSDILVYL 343
G+ + +L L
Sbjct: 117 GIFTRRVVLKEL 128
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Score = 40.6 bits (94), Expect = 6e-05
Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 21/142 (14%)
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHK 191
G L +++ + +T+EE+ I+ + V+DE G + +L+ +
Sbjct: 3 AGGLMTPEYVAV------REGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLR 56
Query: 192 RILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251
+ R +I V V +T R + + LP+
Sbjct: 57 D--------------LIVADPRTRVAEIMN-PKVVYVRTDTDQEEVARLMADYDFTVLPV 101
Query: 252 TDSEGHLVDIFAKFDVINLAAE 273
D EG LV I DV+++
Sbjct: 102 VDEEGRLVGIVTVDDVLDVLEA 123
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 21/142 (14%)
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHK 191
G + T+F+ I ++ T+ + I+ + V+D+ +++ +++ +
Sbjct: 3 AGAIMTTEFVSI------VANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLR 56
Query: 192 RILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251
++ + + E V +V + + A+P+
Sbjct: 57 DLIVNDDDTL---------------IADILNERVISVHVGDDQEDVAQTIRDYDFLAVPV 101
Query: 252 TDSEGHLVDIFAKFDVINLAAE 273
TD + HL+ I D+I++ +
Sbjct: 102 TDYDDHLLGIVTVDDIIDVIDD 123
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 9e-04
Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 18/136 (13%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMT--DSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ ++ E S P+ LV + D+I V
Sbjct: 21 LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMER----------------IVRAEVHRLVVVDEDD 328
L +++ I R R +V +
Sbjct: 81 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140
Query: 329 HVLGVLSLSDILVYLV 344
+LG+++ D+L ++
Sbjct: 141 RLLGIITKKDVLKHIA 156
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/140 (11%), Positives = 44/140 (31%), Gaps = 19/140 (13%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V ++A ++ L + ++ P D+ + + + +
Sbjct: 20 DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQ 79
Query: 284 KEANEHKTDWFEGVEK-----------CLLDETLFTVMERIVRAEVH--------RLVVV 324
+ E+ C +D++ F ++E + H V
Sbjct: 80 PFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYV 139
Query: 325 DEDDHVLGVLSLSDILVYLV 344
++GV++L++I +
Sbjct: 140 TSMGKLVGVVALAEIQAAIE 159
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.89 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.88 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.88 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.87 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.87 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.83 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.82 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.82 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.82 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.81 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.81 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.81 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.8 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.8 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.79 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.79 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.79 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.79 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.78 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.77 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.76 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.76 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.76 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.75 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.75 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.75 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.74 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.74 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.73 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.73 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.73 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.73 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.73 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.71 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.7 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.68 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.68 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.68 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.68 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.66 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.66 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.66 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.65 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.64 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.64 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.64 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.63 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.63 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.63 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.62 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.57 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.57 |
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=4.3e-23 Score=173.19 Aligned_cols=144 Identities=57% Similarity=0.906 Sum_probs=132.0
Q ss_pred CCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhH
Q psy744 204 LPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283 (405)
Q Consensus 204 ~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v 283 (405)
++.++++.+++++++++++++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+........+.++
T Consensus 1 ~p~~~f~~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v 80 (145)
T d2v8qe1 1 FPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 80 (145)
T ss_dssp SSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBH
T ss_pred CCchHHhhCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhh
Confidence 36688899999999988788999999999999999999999999999999999999999999999888776656667778
Q ss_pred HHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
.+.+.....|..++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||+++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~~~ 144 (145)
T d2v8qe1 81 TKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 144 (145)
T ss_dssp HHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred hhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHhcC
Confidence 8887777778889999999999999999999999999999999999999999999999998654
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.88 E-value=4.2e-22 Score=168.72 Aligned_cols=137 Identities=34% Similarity=0.642 Sum_probs=125.9
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
++++++++++++++++.+++++.+|++.|.+++++++||+|++|+++|+++..|+++.+........+.++.+++.....
T Consensus 2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (153)
T d2ooxe2 2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA 81 (153)
T ss_dssp BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeec
Confidence 57788888889999999999999999999999999999999999999999999999988876656667788999888778
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSD 349 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~ 349 (405)
+..+++++.+++++.++++.|.+++++++||||++|+++|+||++||++++...+..
T Consensus 82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~~~ 138 (153)
T d2ooxe2 82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT 138 (153)
T ss_dssp CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCTTC
T ss_pred ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCccc
Confidence 888999999999999999999999999999999999999999999999999865543
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=1.4e-22 Score=172.73 Aligned_cols=153 Identities=44% Similarity=0.771 Sum_probs=121.6
Q ss_pred hhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCC
Q psy744 74 GNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI 153 (405)
Q Consensus 74 ~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~ 153 (405)
+...|++||++++|+|+||.+.++++++.++++.+|++.|.++++.++||+|++.++++|++|..|++..+.........
T Consensus 2 ~~~~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~ 81 (159)
T d2v8qe2 2 NSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALV 81 (159)
T ss_dssp CSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccc
Confidence 35689999999999999999999999999999999999999999999999998769999999999999887654321111
Q ss_pred CHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCC
Q psy744 154 TMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETS 233 (405)
Q Consensus 154 ~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 233 (405)
.......... ........++| ..++++++++++
T Consensus 82 ~~~~~~~~~~--------------------------------------------~~~~~~~~~~~---~~~~~~v~~~~~ 114 (159)
T d2v8qe2 82 QIYELEEHKI--------------------------------------------ETWREVYLQDS---FKPLVCISPNAS 114 (159)
T ss_dssp TCCCGGGCBH--------------------------------------------HHHHHHHSSSS---CCCCCCBCTTSB
T ss_pred hhhhhhhhhc--------------------------------------------ccccceeeeee---ccceEEECCCCc
Confidence 0000000000 00011233444 378899999999
Q ss_pred HHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHHh
Q psy744 234 IIHALRKFLERRVSALPMTD-SEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 234 l~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dl~~~~~~ 273 (405)
+.+++++|.+++++++||+| ++|+++|+||.+||++++..
T Consensus 115 l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~ 155 (159)
T d2v8qe2 115 LFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL 155 (159)
T ss_dssp HHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence 99999999999999999998 46899999999999998754
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.87 E-value=2.4e-22 Score=174.63 Aligned_cols=159 Identities=27% Similarity=0.524 Sum_probs=125.2
Q ss_pred ccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC
Q psy744 71 KDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150 (405)
Q Consensus 71 ~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~ 150 (405)
++.++++++.||+.++|||+||.|+++++++++.++.+|++.|.++++.++||||++.++++|++|..|+++++......
T Consensus 6 ~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~ 85 (179)
T d2ooxe1 6 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS 85 (179)
T ss_dssp HHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcccc
Confidence 44568999999999999999999999999999999999999999999999999998768999999999999988765432
Q ss_pred CCCCHH--HHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEE
Q psy744 151 SSITME--ELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETV 228 (405)
Q Consensus 151 ~~~~~~--~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v 228 (405)
...... +........ +.. .......| .++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~---------------------------~~~---------------~~~~~~~~---~~~~i~v 120 (179)
T d2ooxe1 86 SSFPEAIAEIDKFRLLG---------------------------LRE---------------VERKIGAI---PPETIYV 120 (179)
T ss_dssp CSCGGGGGGGGGSBHHH---------------------------HHH---------------HHHHTTCS---CSSCCCB
T ss_pred ccchhhhhhhhccchhh---------------------------hcc---------------cceeeeec---ccCceEE
Confidence 221111 111000000 000 11222333 3788999
Q ss_pred cCCCCHHHHHHHHHhcCCCEEEEECCCC-----cEEEEEeHHHHHHHHHhc
Q psy744 229 AEETSIIHALRKFLERRVSALPMTDSEG-----HLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 229 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g-----~lvGivt~~Dl~~~~~~~ 274 (405)
.+++++.+|+..|.+++++++||+|++| +++|++|.+||++.+..+
T Consensus 121 ~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~ 171 (179)
T d2ooxe1 121 HPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN 171 (179)
T ss_dssp CTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence 9999999999999999999999998654 699999999999998765
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.5e-21 Score=162.64 Aligned_cols=137 Identities=36% Similarity=0.656 Sum_probs=114.7
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
++..+++++..+++++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.............+.+.+.
T Consensus 3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T d2nyca1 3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM 82 (140)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhh
Confidence 45678888877778999999999999999999999999999999999999999999999999877654444555566555
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
....+..++++|++++++.++++.|.+++++++||||++|+++|+||.+||++++..
T Consensus 83 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~~ 139 (140)
T d2nyca1 83 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 139 (140)
T ss_dssp HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHhc
Confidence 555567788999999999999999999999999999999999999999999999863
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=5.8e-21 Score=155.49 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=106.2
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
+++++| .++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..............++++
T Consensus 2 t~~diM---~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~i------ 72 (123)
T d1y5ha3 2 TARDIM---NAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGEL------ 72 (123)
T ss_dssp CHHHHS---EETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHH------
T ss_pred CHHHhc---CCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEE------
Confidence 577888 47899999999999999999999999999999999999999999998765554443344556666
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
|.+++.++++++++.+|++.|.+++++++||+| +|+++|+||.+||++++
T Consensus 73 m~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l 122 (123)
T d1y5ha3 73 ARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL 122 (123)
T ss_dssp HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred eeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence 457889999999999999999999999999998 68999999999999875
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.82 E-value=3.4e-20 Score=154.77 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=108.7
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
+++++| .+++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++............+++++
T Consensus 4 ~v~dim---~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~i------ 74 (142)
T d1pvma4 4 RVEKIM---NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLV------ 74 (142)
T ss_dssp BGGGTS---BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGT------
T ss_pred EHHHhC---CCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccccccccccc------
Confidence 688888 48899999999999999999999999999999999999999999998876554333333444444
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.++++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++.
T Consensus 75 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~ 126 (142)
T d1pvma4 75 MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS 126 (142)
T ss_dssp SBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred cccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999999774
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.82 E-value=3.2e-20 Score=151.93 Aligned_cols=124 Identities=24% Similarity=0.296 Sum_probs=106.3
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
+++++|....++++++.+++++.+|+++|.+++++++||++ +|+++|++|.+|+++..........+.++.++
T Consensus 3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~i------ 75 (127)
T d2rc3a1 3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEI------ 75 (127)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGT------
T ss_pred cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeee------
Confidence 56666643336899999999999999999999999999998 68999999999998876554333344455554
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||..||++++.
T Consensus 76 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i 126 (127)
T d2rc3a1 76 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI 126 (127)
T ss_dssp SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred ccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence 678999999999999999999999999999998 699999999999999875
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=1.1e-19 Score=149.78 Aligned_cols=127 Identities=17% Similarity=0.318 Sum_probs=110.9
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
+..+++++| .++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++....+.. ....+++++
T Consensus 3 ~~~pV~~im---~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~-~~~~~v~~i--- 75 (132)
T d2yzia1 3 MKAPIKVYM---TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERI--- 75 (132)
T ss_dssp TTSBGGGTC---BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGT---
T ss_pred CCCcHHHHc---CCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccC-ccceeEeec---
Confidence 355899999 4899999999999999999999999999999999999999999999987765422 234455554
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++.++++++++.++++.|.+++++++||++ +|+++|+||.+||++++..+-
T Consensus 76 ---m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~l 129 (132)
T d2yzia1 76 ---MTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRL 129 (132)
T ss_dssp ---CBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCS
T ss_pred ---ccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence 668999999999999999999999999999876 799999999999999987544
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.81 E-value=1.3e-19 Score=148.26 Aligned_cols=122 Identities=15% Similarity=0.257 Sum_probs=108.5
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
...++++| .++++++.+++++.+|+++|.+++++++||+| +|+++|+++..|+++.+..+.. .+.++.++
T Consensus 3 ~~~V~d~m---~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~--~~~~v~~~---- 72 (127)
T d2ef7a1 3 EEIVKEYM---KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS--LETKAEEF---- 72 (127)
T ss_dssp CCBGGGTS---BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC--TTCBGGGT----
T ss_pred ccCHHHhC---CCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhcc--ccchhhhh----
Confidence 45788888 48899999999999999999999999999998 4799999999999998876532 23444444
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.+++.++++++++.++++.|.+++++++||+|++|+++|+||..||++++.
T Consensus 73 --~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~ 124 (127)
T d2ef7a1 73 --MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID 124 (127)
T ss_dssp --SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred --hhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence 6688999999999999999999999999999999999999999999999986
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=2.3e-20 Score=151.67 Aligned_cols=119 Identities=23% Similarity=0.310 Sum_probs=88.8
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
+++++|. ++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++...... .+. +.
T Consensus 2 ~v~diM~---~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~-------~~~------~~ 65 (122)
T d2yzqa2 2 RVKTIMT---QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEE-------QLA------ML 65 (122)
T ss_dssp BHHHHSE---ESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------------CC
T ss_pred CcccccC---CCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhccc-------chh------hc
Confidence 4677783 7899999999999999999999999999999999999999999998653322 222 34
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|.+++++|++++++.++++.|.+++++++||+|++|+++|+||.+||++++..+.
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~~ 120 (122)
T d2yzqa2 66 VKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS 120 (122)
T ss_dssp CBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC
T ss_pred cccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhHh
Confidence 7789999999999999999999999999999999999999999999999887543
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.81 E-value=1.5e-19 Score=150.17 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=107.4
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc-------chhhhHHH
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT-------NLDVTLKE 285 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~-------~l~~~v~~ 285 (405)
+++++| .++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++........ ....++.+
T Consensus 3 ~v~diM---~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (139)
T d2o16a3 3 KVEDMM---TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE 79 (139)
T ss_dssp BGGGTS---EESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred EHHHhC---cCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH
Confidence 578888 47899999999999999999999999999999999999999999999887664221 11334555
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
+ |.+++.+|++++++.+|+++|.+++++++||+| +|+++|+||.+||++++..
T Consensus 80 i------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~ 132 (139)
T d2o16a3 80 V------MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAIN 132 (139)
T ss_dssp H------SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHH
T ss_pred h------hccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence 5 668999999999999999999999999999998 6999999999999999873
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=1.4e-19 Score=148.95 Aligned_cols=125 Identities=14% Similarity=0.208 Sum_probs=107.6
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc----chhhhHHHhh
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT----NLDVTLKEAN 287 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~----~l~~~v~~~~ 287 (405)
.+++++|+.. ++++++.+++++.+|++.|.+++++++||+|++|+++|+++.+|+++.+...... ....++.++
T Consensus 2 ~tv~~~mip~-~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~- 79 (132)
T d1yava3 2 ATVGQFMIEA-DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEV- 79 (132)
T ss_dssp CBHHHHSEEG-GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHH-
T ss_pred CCHHHccccc-cceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccc-
Confidence 4788888754 7899999999999999999999999999999999999999999999988654221 123455665
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|.++++++++++++.++++.|.+++ .+||+|++|+++|+||.+||++++.+
T Consensus 80 -----m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~ 130 (132)
T d1yava3 80 -----MLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNK 130 (132)
T ss_dssp -----SBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred -----ccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence 5678999999999999999998764 59999999999999999999999874
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=6.3e-20 Score=155.44 Aligned_cols=130 Identities=21% Similarity=0.233 Sum_probs=105.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhh---------
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDV--------- 281 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~--------- 281 (405)
+.++.++| .++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.............
T Consensus 3 ~~~v~~~m---~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T d2yzqa1 3 GVEIEPYY---QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW 79 (156)
T ss_dssp GCBSTTTS---BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred CCCHHHHh---cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhh
Confidence 45788888 489999999999999999999999999999999999999999999976543221110000
Q ss_pred --------hHH------HhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 282 --------TLK------EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 282 --------~v~------~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
... .-..+.+.|.+++.+|.+++++.++++.|.+++++++||+|++|+++||||++||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l 155 (156)
T d2yzqa1 80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 155 (156)
T ss_dssp -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence 000 00123456778899999999999999999999999999999999999999999999987
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.79 E-value=3e-19 Score=145.80 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=97.0
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceE
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEK 299 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~ 299 (405)
..+++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+..+..... .... ..+..++++
T Consensus 4 i~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~------~~~~-----~~~~~~~~~ 72 (126)
T d1zfja4 4 IIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNA------PISE-----HMTSEHLVT 72 (126)
T ss_dssp SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSS------BTTT-----SCCCSCCCC
T ss_pred EeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCC------ceee-----eeeccceee
Confidence 367889999999999999999999999999996 689999999999987543321 1111 125578889
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 300 CLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 300 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+.+++++.+|+++|.+++++++||||++|+++|+||++||++++.
T Consensus 73 ~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~ 117 (126)
T d1zfja4 73 AAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE 117 (126)
T ss_dssp EETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 999999999999999999999999999999999999999999875
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=3.8e-19 Score=144.13 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=104.6
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
.++++| .+++.++.+++++.+|+++|.+.+.+++||+|++|+++|+++..|++++.. +.++.++
T Consensus 2 ~v~~~m---~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~-------~~~v~~~------ 65 (121)
T d1vr9a3 2 KVKKWV---TQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL-------DSSVFNK------ 65 (121)
T ss_dssp BGGGGC---BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT-------TSBSGGG------
T ss_pred Cchhhh---cCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc-------ccccccc------
Confidence 466777 488999999999999999999999999999999999999999999975422 2233333
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|..++.++++++++.++++.|.+++...+||||++|+++|+||..||++++..+.
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l 120 (121)
T d1vr9a3 66 VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 120 (121)
T ss_dssp CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred ccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence 6678899999999999999999999999999999999999999999999998643
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=2.9e-19 Score=148.60 Aligned_cols=124 Identities=16% Similarity=0.280 Sum_probs=108.4
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc-----chhhhHHHhh
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT-----NLDVTLKEAN 287 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~-----~l~~~v~~~~ 287 (405)
+++++| .++++++.+++++.+|++.|.+++++++||+|++++++|+++..|+++.+...... ....++.++
T Consensus 3 ~V~~iM---t~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~i- 78 (141)
T d3ddja1 3 PVKVFM---STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV- 78 (141)
T ss_dssp BHHHHS---BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHH-
T ss_pred eeHHhC---cCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHH-
Confidence 678888 47899999999999999999999999999999999999999999999877543211 122345554
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++..
T Consensus 79 -----m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~ 131 (141)
T d3ddja1 79 -----MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 131 (141)
T ss_dssp -----SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred -----hCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999874
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.79 E-value=4.2e-19 Score=145.17 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=103.5
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhh
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLER-----RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEAN 287 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~ 287 (405)
+++.+| .++++++++++++.+|++.|.++ .++.+||+|++|+++|+++.++++.. ..+.++.++
T Consensus 2 taG~iM---~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~-------~~~~~v~~i- 70 (127)
T d2ouxa2 2 TAGAIM---TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------DDDTLIADI- 70 (127)
T ss_dssp BHHHHC---BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-------CTTSBHHHH-
T ss_pred ChhHhC---CCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc-------cccEEhhhh-
Confidence 566778 48999999999999999999876 46899999999999999999998643 224567776
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|.++++++++++++.+|++.|.+++++++||||++|+++|+||..||++++..
T Consensus 71 -----m~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e 123 (127)
T d2ouxa2 71 -----LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD 123 (127)
T ss_dssp -----SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred -----ccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999998853
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.78 E-value=1.4e-18 Score=140.49 Aligned_cols=118 Identities=27% Similarity=0.377 Sum_probs=104.4
Q ss_pred cccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccC
Q psy744 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDW 293 (405)
Q Consensus 214 v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~ 293 (405)
++++| .+++.++.+++|+.+|++.|.+++++++||++ +|+++|++|.+||++.+..+. ...+.++.++ |
T Consensus 2 V~diM---~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~-~~~~~~v~~~------m 70 (120)
T d1pbja3 2 VEDVM---VTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD-DLAEVKVWEV------M 70 (120)
T ss_dssp HHHHC---BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-CTTTSBHHHH------C
T ss_pred hHHhC---CCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccc-cccceeEeee------c
Confidence 56778 47899999999999999999999999999997 489999999999999887663 2335567776 5
Q ss_pred ccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 294 FEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 294 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
.+++.++++++++.+|++.|.+++++++||++ +|+++|+||.+||+++.
T Consensus 71 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~ 119 (120)
T d1pbja3 71 ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK 119 (120)
T ss_dssp BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence 58899999999999999999999999999987 79999999999999975
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=1.5e-18 Score=144.89 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=103.5
Q ss_pred cccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch--------------
Q psy744 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL-------------- 279 (405)
Q Consensus 214 v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l-------------- 279 (405)
+.++| ..+++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++..........
T Consensus 6 v~~~m---~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (145)
T d1o50a3 6 VCKLI---SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI 82 (145)
T ss_dssp HTTSS---CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred hHHhC---CCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence 44455 4788999999999999999999999999999999999999999999987754322111
Q ss_pred hhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 280 DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 280 ~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
..++.+ +..+++++.+++++.+|+++|.+++++++||||++|+++|+||.+||++++..+.
T Consensus 83 ~~~~~~-------~~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~ 143 (145)
T d1o50a3 83 AKNASE-------IMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR 143 (145)
T ss_dssp SCBHHH-------HCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred ccCHHH-------HcCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence 111222 2246778999999999999999999999999999999999999999999998653
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=3.1e-19 Score=149.19 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=102.5
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhh
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERR-----VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEAN 287 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~ 287 (405)
+++.+| .++++++++++|+.+|++.|.+++ ++.+||+|++|+++|+++.+|+...... .++.
T Consensus 2 taG~iM---~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~~-------~~v~--- 68 (144)
T d2yvxa2 2 EAGGLM---TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPR-------TRVA--- 68 (144)
T ss_dssp SSGGGC---BSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCTT-------CBST---
T ss_pred Cccccc---CCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcccc-------cchH---
Confidence 567788 489999999999999999998764 6789999999999999999998654222 2222
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
+.|.+++.++++++++.+|++.|.+++++++||||++|+++|+||.+||++++..+
T Consensus 69 ---~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e 124 (144)
T d2yvxa2 69 ---EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 124 (144)
T ss_dssp ---TTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred ---HhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999998753
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.76 E-value=4.1e-18 Score=147.40 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHH
Q psy744 190 HKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS-EGHLVDIFAKFDVI 268 (405)
Q Consensus 190 ~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dl~ 268 (405)
+++.++.+..++. ..++.++|... .+++++.++.++.+|++.|.+++++++||+|+ +++++|++|..|++
T Consensus 6 ~~~~~~~i~~fl~--------~~~~~dvm~~s-~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~ 76 (179)
T d2ooxe1 6 QKGALKEIQAFIR--------SRTSYDVLPTS-FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFV 76 (179)
T ss_dssp HHHHHHHHHHHHH--------HSBHHHHSCSE-EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHc--------CCEeeeeCCCC-CcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHH
Confidence 4555655554433 55788888532 57999999999999999999999999999985 58999999999999
Q ss_pred HHHHhccc----cc--------hhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC-----cEE
Q psy744 269 NLAAEKTY----TN--------LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD-----HVL 331 (405)
Q Consensus 269 ~~~~~~~~----~~--------l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-----~lv 331 (405)
+.+..... .. ....+.........|..++++|.++++|.+|++.|.+++++++||+|++| +++
T Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vv 156 (179)
T d2ooxe1 77 NVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIV 156 (179)
T ss_dssp HHHHHHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEE
T ss_pred HHHHhccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEE
Confidence 87653210 00 00111122223345778999999999999999999999999999998654 699
Q ss_pred EEEeHHHHHHHHHhCC
Q psy744 332 GVLSLSDILVYLVLKP 347 (405)
Q Consensus 332 GiIt~~DIl~~l~~~~ 347 (405)
|+||++||++++..+-
T Consensus 157 giiT~~dIlk~l~~~~ 172 (179)
T d2ooxe1 157 SVLTQYRILKFISMNC 172 (179)
T ss_dssp EEEEHHHHHHHHHTTC
T ss_pred EEEeHHHHHHHHHHhh
Confidence 9999999999998554
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.76 E-value=3.5e-18 Score=140.20 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=103.4
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE--CCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT--DSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
+++++| .++++++++++++.+|++.|.+++++++||+ |++++++|+++..|+++......... ...
T Consensus 2 ~V~dim---~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~--~~~------- 69 (131)
T d2riha1 2 RTSELL---KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD--GPA------- 69 (131)
T ss_dssp BGGGGC---CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT--SBS-------
T ss_pred CHHHhc---cCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc--ccc-------
Confidence 577888 4889999999999999999999999999999 55689999999999999877653221 111
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
..+..++.++.+++++.+++++|.+++++++||+|++|+++|+||..||++++.
T Consensus 70 ~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~ 123 (131)
T d2riha1 70 MPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA 123 (131)
T ss_dssp GGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred ccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 124567889999999999999999999999999999999999999999998764
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=7.9e-19 Score=142.63 Aligned_cols=122 Identities=20% Similarity=0.191 Sum_probs=102.6
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
+||.|+| ++++++++++.++.+|++.|.+++++++||+|++ ++++|++|..|++..+......
T Consensus 1 tt~~diM--~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~-------------- 63 (123)
T d1y5ha3 1 TTARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLD-------------- 63 (123)
T ss_dssp CCHHHHS--EETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCC--------------
T ss_pred CCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCC--------------
Confidence 5789999 6789999999999999999999999999999987 8999999999998543211000
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
.....++++| .+++.++.+++++.+|++.|.++
T Consensus 64 --------------------------------------------~~~~~v~~im---~~~~~~v~~~~~~~~~~~~m~~~ 96 (123)
T d1y5ha3 64 --------------------------------------------PNTATAGELA---RDSIYYVDANASIQEMLNVMEEH 96 (123)
T ss_dssp --------------------------------------------TTTSBHHHHH---TTCCCCEETTCCHHHHHHHHHHH
T ss_pred --------------------------------------------cccceEEEEe---eccceeeeecchHHHHHHHHHHc
Confidence 0122455666 47889999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
+++++||+| +|+++|+||..||++.+
T Consensus 97 ~~~~lpVvd-~~~lvGiit~~Dil~~l 122 (123)
T d1y5ha3 97 QVRRVPVIS-EHRLVGIVTEADIARHL 122 (123)
T ss_dssp TCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred CceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence 999999998 58999999999998753
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=7.7e-18 Score=140.55 Aligned_cols=141 Identities=14% Similarity=0.237 Sum_probs=110.6
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
+-..+.++| +.+++++.+++++.+|++.|.++++.++||+|++ ++++|++|..||++++...............
T Consensus 2 k~~~v~~~m--~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~--- 75 (145)
T d1o50a3 2 KVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIR--- 75 (145)
T ss_dssp BHHHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC---------
T ss_pred cceEhHHhC--CCCCEEECCcCcHHHHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHH---
Confidence 445677788 6678999999999999999999999999999987 8999999999999887654322211000000
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
. ....+....++++| .+++++.+++++.+|++.|.
T Consensus 76 ------------------------------------~-----~~~~~~~~~~~~~~----~~~~~i~~~~~l~~a~~~m~ 110 (145)
T d1o50a3 76 ------------------------------------S-----SMKRLIAKNASEIM----LDPVYVHMDTPLEEALKLMI 110 (145)
T ss_dssp ------------------------------------------CCCCCSSCBHHHHC----BCCCCBCTTSBHHHHHHHHH
T ss_pred ------------------------------------h-----hhhhccccCHHHHc----CCCEEEcCCCCHHHHHHHHH
Confidence 0 00112233555665 56788999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++++++||+|++|+++|+||.+|+++++.++
T Consensus 111 ~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~ 142 (145)
T d1o50a3 111 DNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 142 (145)
T ss_dssp HHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred HcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence 99999999999999999999999999998765
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=7.6e-19 Score=148.63 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=108.3
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
+..+..++| +++++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|++..+.............
T Consensus 2 ~~~~v~~~m--~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~----- 73 (156)
T d2yzqa1 2 KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAA----- 73 (156)
T ss_dssp GGCBSTTTS--BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC--------------
T ss_pred CCCCHHHHh--cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhccccccccccccc-----
Confidence 456788899 8889999999999999999999999999999987 99999999999985433221111100000
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
......+....+...+.. ........+++++| .+++.++.+++++.++++.|.
T Consensus 74 ------------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~m---~~~~~tv~~~~~l~~~~~~m~ 126 (156)
T d2yzqa1 74 ------------------SSEEEWILESHPTLLFEK------FELQLPNKPVAEIM---TRDVIVATPHMTVHEVALKMA 126 (156)
T ss_dssp -----------------------------------------------CCCBGGGTC---BSSCCCBCTTSBHHHHHHHHH
T ss_pred ------------------chhhhhhhhhhhhhhHHH------hhhcccCCEeehhc---ccCceEECcccccHHHHHHHH
Confidence 000001111111110000 00112345788888 478999999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
+++++++||+|++|+++|+||.+||++++
T Consensus 127 ~~~~~~lpVvd~~g~lvGivt~~Dil~~l 155 (156)
T d2yzqa1 127 KYSIEQLPVIRGEGDLIGLIRDFDLLKVL 155 (156)
T ss_dssp HHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred HcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence 99999999999999999999999998764
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=1.3e-17 Score=141.33 Aligned_cols=134 Identities=22% Similarity=0.286 Sum_probs=108.1
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHHhccccch--------hh
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS-EGHLVDIFAKFDVINLAAEKTYTNL--------DV 281 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dl~~~~~~~~~~~l--------~~ 281 (405)
..++.++|... .+++++..++++.+|++.|.+++++++||+|+ +++++|+++..|++........... ..
T Consensus 12 ~~t~~Dlm~~~-~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (159)
T d2v8qe2 12 SHRCYDLIPTS-SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHK 90 (159)
T ss_dssp HSBGGGGSCSE-EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCB
T ss_pred CCEEEeECCCC-CceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhh
Confidence 55888988432 67899999999999999999999999999974 6899999999999988764321100 00
Q ss_pred hHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEeHHHHHHHHHh
Q psy744 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD-EDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiIt~~DIl~~l~~ 345 (405)
...........|..++++|++++++.+++++|.+++++++||+| ++|+++||||.+||++++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~ 155 (159)
T d2v8qe2 91 IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL 155 (159)
T ss_dssp HHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred cccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence 01111123456778999999999999999999999999999998 46899999999999999974
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.74 E-value=7.1e-20 Score=148.30 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=61.6
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCce
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVE 298 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~ 298 (405)
.++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+....... .+.++.+.+. +..++.
T Consensus 3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~----~~~~~~~~~~----~~~~~~ 74 (120)
T d1jr1a4 3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE----HDRFLEEIMT----KREDLV 74 (120)
T ss_dssp ECTTCC----CCCC--CCBC---------------CTTCCC--------------------------CCS----BTTTSC
T ss_pred ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc----cCceeEEEEe----eccCce
Confidence 367789999999999999999999999999985 67999999999986543322 2333444332 345788
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 299 KCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 299 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
++.+++++.+|+++|.+++++++||||++|+++|+||++||++..
T Consensus 75 ~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~ 119 (120)
T d1jr1a4 75 VAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR 119 (120)
T ss_dssp CEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence 999999999999999999999999999999999999999999864
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.73 E-value=6.9e-18 Score=142.93 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=106.4
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHHhccccchh--------
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAEKTYTNLD-------- 280 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Dl~~~~~~~~~~~l~-------- 280 (405)
+.+++++|. ++++++++++++.+|++.|.+++++++||+|+ ++.++|+++..|+++++.........
T Consensus 10 ~~~V~diM~---~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~ 86 (160)
T d2d4za3 10 NIQVGDIMV---RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLT 86 (160)
T ss_dssp SCBTTSSSB---SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCB
T ss_pred ceEHHHhcC---CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccc
Confidence 558999994 89999999999999999999999999999984 47899999999999887643211000
Q ss_pred -hhHHH----h-----hhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 281 -VTLKE----A-----NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 281 -~~v~~----~-----~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
..... . ......|..+++++++++++.+++++|.+++++++||+| +|+++||||++||++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~ 159 (160)
T d2d4za3 87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE 159 (160)
T ss_dssp HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred cchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence 00000 0 012345778899999999999999999999999999998 799999999999999985
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.73 E-value=6.4e-18 Score=139.33 Aligned_cols=127 Identities=15% Similarity=0.199 Sum_probs=104.6
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchh-hhHH--Hhhhc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLD-VTLK--EANEH 289 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~-~~v~--~~~~~ 289 (405)
+++++|. ++++++.+++++.+|++.|.+++++++||+|+ +++|+++..|+++.+......... .... .-..+
T Consensus 2 ~V~~lM~---~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 76 (135)
T d3ddja2 2 NIETLMI---KNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPI 76 (135)
T ss_dssp SGGGTCE---ESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBG
T ss_pred EeeEEee---CCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccchhhhhccccccCCH
Confidence 5778884 78899999999999999999999999999974 799999999999876543211110 0111 11234
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
++.|..++.++.+++++.+|+++|.+++++++||+|++|+++|+||++||++++.
T Consensus 77 ~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~ 131 (135)
T d3ddja2 77 IDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK 131 (135)
T ss_dssp GGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred HHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence 5568889999999999999999999999999999999999999999999999886
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=3.2e-18 Score=140.70 Aligned_cols=129 Identities=11% Similarity=0.163 Sum_probs=108.4
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
.+|.++|..+.++++++++.++.+|+++|.+++++++||+|++ ++++|++|..|+++++....... .
T Consensus 2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~---~--------- 68 (132)
T d1yava3 2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIE---F--------- 68 (132)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBC---G---------
T ss_pred CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhcccccc---c---------
Confidence 5788999888999999999999999999999999999999987 89999999999997764321100 0
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
......+++++| .+++.++.+++++.+++..|.++
T Consensus 69 ------------------------------------------~~~~~~~v~~~m---~~~~~~v~~~~~l~~~~~~~~~~ 103 (132)
T d1yava3 69 ------------------------------------------EKLDQITVEEVM---LTDIPRLHINDPIMKGFGMVINN 103 (132)
T ss_dssp ------------------------------------------GGTTTSBHHHHS---BCSCCEEETTSBHHHHHHHTTTC
T ss_pred ------------------------------------------cccccccccccc---cccccccccchhHHHHHHHHHhC
Confidence 111244777777 37889999999999999999875
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+ .+||+|++|+++|+||.+|+++++..
T Consensus 104 ~--~l~Vvd~~~~~~Givt~~dil~~l~~ 130 (132)
T d1yava3 104 G--FVCVENDEQVFEGIFTRRVVLKELNK 130 (132)
T ss_dssp S--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred C--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence 4 59999999999999999999998764
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.73 E-value=9.6e-18 Score=139.12 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=109.1
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
.++.|+| +++++++.++.++.+|++.|.+++++++||+|++ ++++|++|..|++.++.........
T Consensus 2 i~v~diM--~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~----------- 67 (139)
T d2o16a3 2 IKVEDMM--TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQ----------- 67 (139)
T ss_dssp CBGGGTS--EESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------------
T ss_pred EEHHHhC--cCCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhc-----------
Confidence 3688999 6689999999999999999999999999999987 8999999999999876654211100
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
........+++++| .+++.++++++++.+|+++|.++
T Consensus 68 ----------------------------------------~~~~~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~ 104 (139)
T d2o16a3 68 ----------------------------------------GDSLAFETPLFEVM---HTDVTSVAPQAGLKESAIYMQKH 104 (139)
T ss_dssp ---------------------------------------------CCCBHHHHS---CSCEEEBCTTSBHHHHHHHHHHT
T ss_pred ----------------------------------------ccccccccchhHhh---ccccccccccchHHHHHHHHHHc
Confidence 00011244788888 48899999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++++||+| +|+++|+||..||++++.+.
T Consensus 105 ~~~~lpVvd-~~~lvGiit~~Dil~~~~~~ 133 (139)
T d2o16a3 105 KIGCLPVVA-KDVLVGIITDSDFVTIAINL 133 (139)
T ss_dssp TCSCEEEEE-TTEEEEEECHHHHHHHHHHH
T ss_pred CceEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence 999999999 58999999999999987653
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.73 E-value=2.7e-17 Score=134.18 Aligned_cols=125 Identities=16% Similarity=0.237 Sum_probs=108.1
Q ss_pred hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhc
Q psy744 82 FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH 161 (405)
Q Consensus 82 l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~ 161 (405)
|+..++.|+| ++++++++++.++.+|++.|.+++++++||+|+ ++++|++|..|+++.+....
T Consensus 1 l~~~~V~d~m--~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~------------- 63 (127)
T d2ef7a1 1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGK------------- 63 (127)
T ss_dssp CCCCBGGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTC-------------
T ss_pred CCccCHHHhC--CCCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhc-------------
Confidence 3456788999 678999999999999999999999999999986 78999999999986654210
Q ss_pred cHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHH
Q psy744 162 KLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKF 241 (405)
Q Consensus 162 ~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m 241 (405)
....++.++| .+++.++.+++++.++++.|
T Consensus 64 -----------------------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~m 93 (127)
T d2ef7a1 64 -----------------------------------------------SLETKAEEFM---TASLITIREDSPITGALALM 93 (127)
T ss_dssp -----------------------------------------------CTTCBGGGTS---EECCCCEETTSBHHHHHHHH
T ss_pred -----------------------------------------------cccchhhhhh---hhhccccccccchhHHHHHH
Confidence 0133566777 37889999999999999999
Q ss_pred HhcCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 242 LERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 242 ~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
.+++++++||+|++|+++|+||..|+++++.+
T Consensus 94 ~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~ 125 (127)
T d2ef7a1 94 RQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125 (127)
T ss_dssp HHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred HHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence 99999999999999999999999999998764
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.71 E-value=2.5e-17 Score=137.11 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=107.4
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
.++.|+| +++++++++++++.+|++.|.++++..+||+|++ ++++|++|..|+++.+.....
T Consensus 3 m~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~--------------- 64 (142)
T d1pvma4 3 MRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNK--------------- 64 (142)
T ss_dssp CBGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCC---------------
T ss_pred EEHHHhC--CCCCcEECCcCcHHHHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcc---------------
Confidence 4678999 6789999999999999999999999999999987 899999999999865432110
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
.....+++++| .++++++.+++++.+|++.|.++
T Consensus 65 -------------------------------------------~~~~~~v~~im---~~~~~~v~~~~~l~~~~~~m~~~ 98 (142)
T d1pvma4 65 -------------------------------------------KPDEVPIRLVM---RKPIPKVKSDYDVKDVAAYLSEN 98 (142)
T ss_dssp -------------------------------------------CGGGSBGGGTS---BSSCCEEETTCBHHHHHHHHHHH
T ss_pred -------------------------------------------ccccccccccc---ccccccccchhhHHHHHHHHHHc
Confidence 01133677777 47899999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+++++||+|++|+++|+||..||++++.+
T Consensus 99 ~~~~lpVvd~~g~l~Giit~~Dil~~l~~ 127 (142)
T d1pvma4 99 GLERCAVVDDPGRVVGIVTLTDLSRYLSR 127 (142)
T ss_dssp TCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred CCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence 99999999999999999999999986654
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1e-16 Score=132.97 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=100.7
Q ss_pred cccccc-cCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCC-CHHHHhhcc
Q psy744 85 HKCYDL-IPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI-TMEELEEHK 162 (405)
Q Consensus 85 ~~~~d~-~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~-~~~~l~~~~ 162 (405)
.+..|+ +.+++++++++.++++.+|++.|.+++++++||+|++ ++++|++|..|+++++......... .....
T Consensus 6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~---- 80 (140)
T d2nyca1 6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEA---- 80 (140)
T ss_dssp SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHH----
T ss_pred CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhh----
Confidence 456666 4457889999999999999999999999999999987 8999999999999887643221110 00000
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
+ .....+ ..+++++.+++++.++++.|.
T Consensus 81 ----------------------------------~---------------~~~~~~---~~~~~~v~~~~~l~~~~~~~~ 108 (140)
T d2nyca1 81 ----------------------------------L---------------MRRSDD---FEGVYTCTKNDKLSTIMDNIR 108 (140)
T ss_dssp ----------------------------------H---------------HHCC---------CEECTTSBHHHHHHHHH
T ss_pred ----------------------------------h---------------hhhhhc---ccccEEECCCCcHHHHHHHHH
Confidence 0 011111 256789999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+++++++||+|++|+++|+||.+|+++++.
T Consensus 109 ~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~ 138 (140)
T d2nyca1 109 KARVHRFFVVDDVGRLVGVLTLSDILKYIL 138 (140)
T ss_dssp HHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred hcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence 999999999999999999999999998864
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.68 E-value=1.5e-16 Score=130.49 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=105.9
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
.+.|+| +++++++++++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+....
T Consensus 6 pV~~im--~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~----------------- 65 (132)
T d2yzia1 6 PIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPG----------------- 65 (132)
T ss_dssp BGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTC-----------------
T ss_pred cHHHHc--CCCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhcc-----------------
Confidence 567888 6789999999999999999999999999999997 89999999999986543210
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
.....+++++| .+++.++.+++++.++++.|.+++
T Consensus 66 ------------------------------------------~~~~~~v~~im---~~~~~~v~~~~~~~~~~~~m~~~~ 100 (132)
T d2yzia1 66 ------------------------------------------LPYDIPVERIM---TRNLITANVNTPLGEVLRKMAEHR 100 (132)
T ss_dssp ------------------------------------------CCTTSBGGGTC---BCSCCEEETTSBHHHHHHHHHHHT
T ss_pred ------------------------------------------CccceeEeecc---cccccccCcchHHHHHHHHHHHcC
Confidence 01134788888 478999999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++++||++ +|+++|+||..|+++++.+.
T Consensus 101 ~~~l~V~~-~~~~vGivt~~Dil~a~~~~ 128 (132)
T d2yzia1 101 IKHILIEE-EGKIVGIFTLSDLLEASRRR 128 (132)
T ss_dssp CSEEEEEE-TTEEEEEEEHHHHHHHHHCC
T ss_pred CCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence 99999876 68999999999999987764
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.68 E-value=7.6e-17 Score=131.45 Aligned_cols=123 Identities=19% Similarity=0.261 Sum_probs=101.9
Q ss_pred ccccccCC-CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 86 KCYDLIPT-SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 86 ~~~d~~p~-s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
|+.|+|.. .+++++++++.++.+|+++|.++++.++||+++ ++++|++|..|+++.+....
T Consensus 3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~---------------- 64 (127)
T d2rc3a1 3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLD---------------- 64 (127)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSS----------------
T ss_pred cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhc----------------
Confidence 45666632 357899999999999999999999999999985 89999999999985432110
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
......+++++| .+++.++.+++++.+|++.|.++
T Consensus 65 ------------------------------------------~~~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~ 99 (127)
T d2rc3a1 65 ------------------------------------------KPVKDTQVKEIM---TRQVAYVDLNNTNEDCMALITEM 99 (127)
T ss_dssp ------------------------------------------SCGGGSBGGGTS---BCSCCCBCTTCBHHHHHHHHHHH
T ss_pred ------------------------------------------ccccceeEeeec---cceeEEeccCccHHHHHHHHHHC
Confidence 011234677777 47899999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+++++||+| +|+++|+||..|++++..
T Consensus 100 ~~~~lpVvd-~~~~~GiIt~~Dil~~~i 126 (127)
T d2rc3a1 100 RVRHLPVLD-DGKVIGLLSIGDLVKDAI 126 (127)
T ss_dssp TCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred CCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence 999999998 689999999999998753
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.68 E-value=1.1e-16 Score=132.78 Aligned_cols=130 Identities=19% Similarity=0.293 Sum_probs=108.7
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
.+.++| +.+++++++++|+.+|+++|.+++++++||+|.+ ++++|++|..|+++.+........
T Consensus 3 ~V~~iM--t~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~------------- 66 (141)
T d3ddja1 3 PVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLD------------- 66 (141)
T ss_dssp BHHHHS--BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTC-------------
T ss_pred eeHHhC--cCCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-Cccccccccccchhhhhccccccc-------------
Confidence 355777 6689999999999999999999999999999998 899999999999877654311100
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
.......+++++| .++++++.+++++.++++.|.+++
T Consensus 67 ----------------------------------------~~~~~~~~v~~im---~~~~~~v~~~~~~~~~~~~m~~~~ 103 (141)
T d3ddja1 67 ----------------------------------------PDYFYGKVVKDVM---VTNLVTIDELASVNRAAAEMIVKR 103 (141)
T ss_dssp ----------------------------------------THHHHTCBHHHHS---BCCCCBCCTTSBHHHHHHHHHHHT
T ss_pred ----------------------------------------cccccCCCHHHHh---CcccccccccchhhHHHHHHHHcC
Confidence 0011244778888 478899999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.+++||+|++|+++|+||.+|+++++.+.
T Consensus 104 ~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~ 132 (141)
T d3ddja1 104 IGSLLILNKDNTIRGIITERDLLIALHHI 132 (141)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred CCEEEEEccCCEEEEEEEHHHHHHHHHHH
Confidence 99999999999999999999999988654
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.68 E-value=1.2e-16 Score=130.19 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=101.1
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcC-----CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNG-----IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~-----i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
|+..+| +++++++.++.++.+|++.|++++ +..+||+|++ ++++|+++..+++.. .
T Consensus 2 taG~iM--~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~------~---------- 62 (127)
T d2ouxa2 2 TAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVN------D---------- 62 (127)
T ss_dssp BHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTS------C----------
T ss_pred ChhHhC--CCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccc------c----------
Confidence 566788 778999999999999999999884 6788888887 888888887777610 0
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
...+++++| .++++++.+++++.+|++.
T Consensus 63 -------------------------------------------------~~~~v~~im---~~~~~~v~~~~~l~~a~~~ 90 (127)
T d2ouxa2 63 -------------------------------------------------DDTLIADIL---NERVISVHVGDDQEDVAQT 90 (127)
T ss_dssp -------------------------------------------------TTSBHHHHS---BSCCCCEETTSBHHHHHHH
T ss_pred -------------------------------------------------ccEEhhhhc---cCCCccCCCCCCHHHHHHH
Confidence 134678888 4789999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|.+++++++||+|++|+++|+||..||+.++.+.
T Consensus 91 m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee 124 (127)
T d2ouxa2 91 IRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE 124 (127)
T ss_dssp HHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred HHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence 9999999999999999999999999999987654
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.66 E-value=3.7e-16 Score=132.03 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=110.8
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC-CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV-HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~-~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
..++.|+| +++++++++++++.+|+++|.+++++++||+|+. .+.++|++|..|++..+...........
T Consensus 10 ~~~V~diM--~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~------- 80 (160)
T d2d4za3 10 NIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQP------- 80 (160)
T ss_dssp SCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSC-------
T ss_pred ceEHHHhc--CCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccc-------
Confidence 45899999 6799999999999999999999999999999864 3689999999999988875432211100
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
..+..+..+...+...... .....+.++| .+.++++.+++++.+++++|.
T Consensus 81 ---------------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~tv~~~~~l~~~~~~m~ 130 (160)
T d2d4za3 81 ---------------------FEEMLTLEEIYRWEQREKN------VVVNFETCRI---DQSPFQLVEGTSLQKTHTLFS 130 (160)
T ss_dssp ---------------------CCSCCBHHHHHHHHHHHTT------CBCCTTSSCE---ECCSCCBCTTCBHHHHHHHHH
T ss_pred ---------------------hhhccccchhhhhhhhhcc------cccceeeecc---cCCCEEEcCCCCHHHHHHHHH
Confidence 0001112222222111111 1122345555 378899999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+.+++++||+| +|+++|+||.+||++++.
T Consensus 131 ~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~ 159 (160)
T d2d4za3 131 LLGLDRAYVTS-MGKLVGVVALAEIQAAIE 159 (160)
T ss_dssp HHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred HcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence 99999999998 689999999999999864
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.66 E-value=7e-16 Score=124.34 Aligned_cols=118 Identities=13% Similarity=0.200 Sum_probs=101.4
Q ss_pred cccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHH
Q psy744 87 CYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN 166 (405)
Q Consensus 87 ~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~ 166 (405)
+.|+| +++++++++++|+.+|++.|.+++++.+||.++ ++++|++|..|+++.+.....
T Consensus 2 V~diM--~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~----------------- 60 (120)
T d1pbja3 2 VEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDD----------------- 60 (120)
T ss_dssp HHHHC--BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCC-----------------
T ss_pred hHHhC--CCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeecccccccccc-----------------
Confidence 45788 678999999999999999999999999999985 899999999999977654210
Q ss_pred HHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCC
Q psy744 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRV 246 (405)
Q Consensus 167 l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 246 (405)
....++.++| .+++.++.+++++.+|++.|.+++.
T Consensus 61 ------------------------------------------~~~~~v~~~m---~~~~~~v~~~~~l~~a~~~m~~~~~ 95 (120)
T d1pbja3 61 ------------------------------------------LAEVKVWEVM---ERDLVTISPRATIKEAAEKMVKNVV 95 (120)
T ss_dssp ------------------------------------------TTTSBHHHHC---BCGGGEECTTSCHHHHHHHHHHHTC
T ss_pred ------------------------------------------ccceeEeeec---ccccccccchhHHHHHHHHHHHcCC
Confidence 1133667777 4788999999999999999999999
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 247 SALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 247 ~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
+++||++ +|+++|++|..|++++.
T Consensus 96 ~~l~V~~-~~~l~Givt~~Dil~A~ 119 (120)
T d1pbja3 96 WRLLVEE-DDEIIGVISATDILRAK 119 (120)
T ss_dssp SEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred eEEEEEE-CCEEEEEEEHHHHHhcC
Confidence 9999987 68999999999999874
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=4.1e-17 Score=132.12 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=86.1
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
++.|+| +++++++++++++.+|+++|.++++..+||+|++ ++++|++|..|++....
T Consensus 2 ~v~diM--~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~-------------------- 58 (122)
T d2yzqa2 2 RVKTIM--TQNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD-------------------- 58 (122)
T ss_dssp BHHHHS--EESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC-------------------------
T ss_pred Cccccc--CCCCEEECCcCcHHHHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhc--------------------
Confidence 466788 5688999999999999999999999999999987 99999999888873210
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
...+.++| .++++++.+++++.++++.|.+++
T Consensus 59 ---------------------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~ 90 (122)
T d2yzqa2 59 ---------------------------------------------EEQLAMLV---KRDVPVVKENDTLKKAAKLMLEYD 90 (122)
T ss_dssp --------------------------------------------------CCC---BSCCCEEETTSBHHHHHHHHHHHT
T ss_pred ---------------------------------------------ccchhhcc---ccceeecchhhHHHHHHHHHHHcC
Confidence 12345555 378899999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++++||+|++|+++|+||.+|+++++...
T Consensus 91 ~~~lpVvd~~~~liGiit~~dil~~~~~~ 119 (122)
T d2yzqa2 91 YRRVVVVDSKGKPVGILTVGDIIRRYFAK 119 (122)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred cEEEEEEeCCCEEEEEEEHHHHHHHHHhH
Confidence 99999999999999999999999876543
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.65 E-value=8.3e-16 Score=129.30 Aligned_cols=126 Identities=19% Similarity=0.195 Sum_probs=100.8
Q ss_pred CCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC-CCCCHHHHhhccHHHHHHhc
Q psy744 92 PTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS-SSITMEELEEHKLETNLIDY 170 (405)
Q Consensus 92 p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~-~~~~~~~l~~~~i~~~l~~~ 170 (405)
++.++++++++++++.+|+++|.++++.++||+|++ ++++|++|..|++.++...... ...+..+
T Consensus 9 g~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~------------- 74 (153)
T d2ooxe2 9 GTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE------------- 74 (153)
T ss_dssp SBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHH-------------
T ss_pred CCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhh-------------
Confidence 345689999999999999999999999999999987 8999999999999776543111 1111111
Q ss_pred CCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEE
Q psy744 171 KIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALP 250 (405)
Q Consensus 171 ~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lp 250 (405)
++ .....+ ..+++++.+++++.++++.|.+++++++|
T Consensus 75 ----------------------~~------------------~~~~~~---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~ 111 (153)
T d2ooxe2 75 ----------------------AL------------------LKRPAN---FDGVHTCRATDRLDGIFDAIKHSRVHRLF 111 (153)
T ss_dssp ----------------------HH------------------HTSCCC---SSCCCEECTTCBHHHHHHHHHHSCCSEEE
T ss_pred ----------------------he------------------eeeecc---cCCCeEECCCCcHHHHHHhhhhceeeEEE
Confidence 00 111122 26778999999999999999999999999
Q ss_pred EECCCCcEEEEEeHHHHHHHHHhc
Q psy744 251 MTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 251 Vvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|+|++|+++|+||..|+++++...
T Consensus 112 Vvd~~~~lvGivT~~Dil~~~~~~ 135 (153)
T d2ooxe2 112 VVDENLKLEGILSLADILNYIIYD 135 (153)
T ss_dssp EECTTCBEEEEEEHHHHHHHHHSC
T ss_pred EEcCCCEEEEEEEHHHHHHHHHcC
Confidence 999999999999999999987654
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.5e-16 Score=132.19 Aligned_cols=132 Identities=11% Similarity=0.075 Sum_probs=100.3
Q ss_pred cccccccccc-CC--eeEEcCCCCHHHHHHHHHhcCCCEEEEE--CCCCcEEEEEeHHHHHHHHHhccccchhh------
Q psy744 213 TLRDLKIGTY-EN--VETVAEETSIIHALRKFLERRVSALPMT--DSEGHLVDIFAKFDVINLAAEKTYTNLDV------ 281 (405)
Q Consensus 213 ~v~~i~~~~~-~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivt~~Dl~~~~~~~~~~~l~~------ 281 (405)
.++|+|.... .+ .+.+.++.++.+|+++|.+++++++||+ +++++++|++|.+||+.++..........
T Consensus 4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~ 83 (169)
T d2j9la1 4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII 83 (169)
T ss_dssp BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhh
Confidence 3456664221 22 2456778899999999999999999999 45789999999999998876431110000
Q ss_pred -----------hHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 282 -----------TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 282 -----------~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
....-.++.+.|.+++.+|.+++++.+++++|.+++++++||+| +|+++|+||++||++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~ 157 (169)
T d2j9la1 84 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ 157 (169)
T ss_dssp ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred hhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence 00000123445778899999999999999999999999999987 7999999999999999975
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=2.9e-16 Score=130.79 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=102.3
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcC-----CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNG-----IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~-----i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
|+.++| +++++++++++|+.+|++.|++++ +..+||+|++ ++++|+++..|+....
T Consensus 2 taG~iM--~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~---------------- 62 (144)
T d2yvxa2 2 EAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD---------------- 62 (144)
T ss_dssp SSGGGC--BSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSC----------------
T ss_pred Cccccc--CCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhcc----------------
Confidence 456788 668999999999999999998884 7889999988 8999999999986210
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
...++.++| .+++.++.+++++.+|++.
T Consensus 63 -------------------------------------------------~~~~v~~im---~~~~~~v~~~~~~~~a~~~ 90 (144)
T d2yvxa2 63 -------------------------------------------------PRTRVAEIM---NPKVVYVRTDTDQEEVARL 90 (144)
T ss_dssp -------------------------------------------------TTCBSTTTS---BSSCCCEESSCCHHHHHHH
T ss_pred -------------------------------------------------cccchHHhc---ccCCccCCCCChHHHHHHH
Confidence 123667777 4789999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
|.+++++++||||++|+++|+||.+||++++.+.
T Consensus 91 m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e 124 (144)
T d2yvxa2 91 MADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 124 (144)
T ss_dssp HHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence 9999999999999999999999999999987665
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=4.8e-16 Score=129.51 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=98.3
Q ss_pred CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC-CCCCHHHHhhccHHHHHHhcCC
Q psy744 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS-SSITMEELEEHKLETNLIDYKI 172 (405)
Q Consensus 94 s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~-~~~~~~~l~~~~i~~~l~~~~i 172 (405)
.++++++.++.++.+|+++|.+++++++||+|++ ++++|++|..|++..+...... ......+
T Consensus 19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~--------------- 82 (145)
T d2v8qe1 19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTK--------------- 82 (145)
T ss_dssp CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHH---------------
T ss_pred CCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhh---------------
Confidence 4678999999999999999999999999999987 8999999999998655432110 0101100
Q ss_pred CEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE
Q psy744 173 HRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 173 ~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 252 (405)
.......+ ..++.++.+++++.++++.|.+++++++||+
T Consensus 83 --------------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv 121 (145)
T d2v8qe1 83 --------------------------------------ALQHRSHY---FEGVLKCYLHETLEAIINRLVEAEVHRLVVV 121 (145)
T ss_dssp --------------------------------------HGGGCCSC---CCSCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred --------------------------------------ccchhhhc---cCCCeEECCCCcHHHHHHHHHHcCceEEEEE
Confidence 00122233 3678899999999999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHHHHHh
Q psy744 253 DSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~~~~~ 273 (405)
|++|+++|+||.+||++++..
T Consensus 122 d~~g~l~GiVt~~dii~~lv~ 142 (145)
T d2v8qe1 122 DEHDVVKGIVSLSDILQALVL 142 (145)
T ss_dssp CTTSBEEEEEEHHHHHHHHHS
T ss_pred ccCCEEEEEEEHHHHHHHHHh
Confidence 999999999999999998764
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.63 E-value=2.1e-16 Score=130.02 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=105.3
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
++.|+| .++++++++++++.+|++.|.+++++++||+|+ +++|++|..|++.++.............
T Consensus 2 ~V~~lM--~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~-------- 68 (135)
T d3ddja2 2 NIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCSQGDL-------- 68 (135)
T ss_dssp SGGGTC--EESCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CCHHHH--------
T ss_pred EeeEEe--eCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchhhhhc--------
Confidence 577888 557889999999999999999999999999975 6999999999997654321111000000
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
......+++++| ..++.++.+++++.+|+++|.+++
T Consensus 69 -----------------------------------------~~~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~~ 104 (135)
T d3ddja2 69 -----------------------------------------YHISTTPIIDYM---TPNPVTVYNTSDEFTAINIMVTRN 104 (135)
T ss_dssp -----------------------------------------HHHHTSBGGGTS---EESCCCEETTSCHHHHHHHHHHHT
T ss_pred -----------------------------------------cccccCCHHHHh---CCccceEEeccccchhhhhhhhcc
Confidence 011244788888 488999999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
++++||+|++|+++|+||.+|+++++.+
T Consensus 105 i~~lpVvd~~g~lvGiit~~Dil~~~~~ 132 (135)
T d3ddja2 105 FGSLPVVDINDKPVGIVTEREFLLLYKD 132 (135)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred eeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999987653
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.63 E-value=5.8e-16 Score=125.93 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=92.4
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC-CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV-HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~-~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
.+++++.+++++.+|+++|.++++.++||+|+. .++++|++|..|+......
T Consensus 5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~--------------------------- 57 (126)
T d1zfja4 5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY--------------------------- 57 (126)
T ss_dssp SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS---------------------------
T ss_pred eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc---------------------------
Confidence 356899999999999999999999999999962 3789999999998632110
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
.......+. ..+++++.+++++.+|+++|.+++++++||+|
T Consensus 58 -------------------------------------~~~~~~~~~--~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd 98 (126)
T d1zfja4 58 -------------------------------------NAPISEHMT--SEHLVTAAVGTDLETAERILHEHRIEKLPLVD 98 (126)
T ss_dssp -------------------------------------SSBTTTSCC--CSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC
T ss_pred -------------------------------------CCceeeeee--ccceeecCCCCCHHHHHHHHHhcCCcEEEEEc
Confidence 011111221 36788999999999999999999999999999
Q ss_pred CCCcEEEEEeHHHHHHHHHh
Q psy744 254 SEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~~~~~ 273 (405)
++|+++|+||..|++++...
T Consensus 99 ~~g~lvGiiT~~Dil~~~~~ 118 (126)
T d1zfja4 99 NSGRLSGLITIKDIEKVIEF 118 (126)
T ss_dssp TTSBEEEEEEHHHHHHHHHC
T ss_pred CCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999998653
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=1.2e-15 Score=123.06 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=102.2
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~ 165 (405)
++.++| ++++.++++++|+.+|++.|.+++.+++||+|++ ++++|++|..|+++..
T Consensus 2 ~v~~~m--~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~--------------------- 57 (121)
T d1vr9a3 2 KVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLD--------------------- 57 (121)
T ss_dssp BGGGGC--BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSC---------------------
T ss_pred Cchhhh--cCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhh---------------------
Confidence 456777 6788999999999999999999999999999977 8999999999887210
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
...++.+++ ..++.++++++++.++++.|.+++
T Consensus 58 --------------------------------------------~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~ 90 (121)
T d1vr9a3 58 --------------------------------------------LDSSVFNKV---SLPDFFVHEEDNITHALLLFLEHQ 90 (121)
T ss_dssp --------------------------------------------TTSBSGGGC---BCTTCCEETTSBHHHHHHHHHHCC
T ss_pred --------------------------------------------ccccccccc---cCccEEECCCCCHHHHHHHHHhcC
Confidence 022566666 367889999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
...+||+|++|+++|+||..|+++++.+.
T Consensus 91 ~~~lpVvde~g~~~Gvit~~dil~~l~~~ 119 (121)
T d1vr9a3 91 EPYLPVVDEEMRLKGAVSLHDFLEALIEA 119 (121)
T ss_dssp CSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred ceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence 99999999999999999999999988654
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.62 E-value=1.9e-15 Score=123.56 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=99.2
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC-CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV-HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~-~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
++.|+| +++++++++++++.+|++.|.++++.++||++.+ .++++|++|..|+++.+......
T Consensus 2 ~V~dim--~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~-------------- 65 (131)
T d2riha1 2 RTSELL--KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL-------------- 65 (131)
T ss_dssp BGGGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT--------------
T ss_pred CHHHhc--cCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccc--------------
Confidence 578999 7789999999999999999999999999999532 27899999999998665532100
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
...... + ..+..++.+++++.+++++|.++
T Consensus 66 ----------------------------------------------~~~~~~-~---~~~~~~v~~~~~~~~a~~~m~~~ 95 (131)
T d2riha1 66 ----------------------------------------------DGPAMP-I---ANSPITVLDTDPVHVAAEKMRRH 95 (131)
T ss_dssp ----------------------------------------------TSBSGG-G---CBCCCEEETTSBHHHHHHHHHHH
T ss_pred ----------------------------------------------cccccc-c---cccceeEeeecchHHHHHHHHHC
Confidence 001111 1 25678899999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+++++||+|++|+++|+||..||+++..
T Consensus 96 ~i~~lpVvd~~g~l~Giit~~Dll~~~~ 123 (131)
T d2riha1 96 NIRHVVVVNKNGELVGVLSIRDLCFERA 123 (131)
T ss_dssp TCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred CeEEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 9999999999999999999999987643
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6e-15 Score=126.04 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=107.0
Q ss_pred cccccccCCC--CC--eEEEeCCccHHHHHHHHHHcCCceeeeEeC-CCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHh
Q psy744 85 HKCYDLIPTS--AK--LVVFDTQLLVKKAFFALVYNGIRAAPLWDS-VHQQYVGMLTITDFIKILQMYYTSSSITMEELE 159 (405)
Q Consensus 85 ~~~~d~~p~s--~~--vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~-~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~ 159 (405)
..+.|+|... .+ ++.+..+.|+.+|+++|.+++++++||+++ ..++++|++|..|++.++.............
T Consensus 3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~-- 80 (169)
T d2j9la1 3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST-- 80 (169)
T ss_dssp CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT--
T ss_pred cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccc--
Confidence 4567888532 22 255678889999999999999999999953 3478999999999998886543222110000
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALR 239 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~ 239 (405)
.... .. ...............++++| .+++.++.+++++.++++
T Consensus 81 -----------------------~~~~-~~---------~~~~~~~~~~~~~~~v~~im---~~~~~tv~~~~~l~~v~~ 124 (169)
T d2j9la1 81 -----------------------SIIY-FT---------EHSPPLPPYTPPTLKLRNIL---DLSPFTVTDLTPMEIVVD 124 (169)
T ss_dssp -----------------------CEEE-CS---------SSCCCCCTTCCCCEECGGGE---ESSCCEEETTSBHHHHHH
T ss_pred -----------------------hhhh-hc---------ccchhhhhccccccchhhhc---cCCCEEECCCCcHHHHHH
Confidence 0000 00 00000011122345678888 478999999999999999
Q ss_pred HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 240 KFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 240 ~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+|.+++++++||+| +|+++|+||.+|+++++.+.
T Consensus 125 ~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~ 158 (169)
T d2j9la1 125 IFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM 158 (169)
T ss_dssp HHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred HHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence 99999999999987 68999999999999988765
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.57 E-value=9e-17 Score=129.70 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeC--CCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCC
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDS--VHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKI 172 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~--~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i 172 (405)
.+++++.+++++.+|+++|.++++.++||+|+ ..++++|++|.+|+.......
T Consensus 4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~------------------------- 58 (120)
T d1jr1a4 4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE------------------------- 58 (120)
T ss_dssp CTTCC----CCCC--CCBC---------------CTTCCC----------------------------------------
T ss_pred cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-------------------------
Confidence 35578999999999999999999999999986 237899999999975221110
Q ss_pred CEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE
Q psy744 173 HRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 173 ~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 252 (405)
....+..++.. ..+++++.+++++.+|+++|.+++++++||+
T Consensus 59 -------------------------------------~~~~~~~~~~~-~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVV 100 (120)
T d1jr1a4 59 -------------------------------------HDRFLEEIMTK-REDLVVAPAGITLKEANEILQRSKKGKLPIV 100 (120)
T ss_dssp --------------------------------------------CCSB-TTTSCCEETTCCHHHHHHHTCSCC---CEEE
T ss_pred -------------------------------------cCceeEEEEee-ccCceEECCCCCHHHHHHHHHHcCccEEEEE
Confidence 01122223321 2578899999999999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHHHH
Q psy744 253 DSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~~~ 271 (405)
|++|+++|+||..||++..
T Consensus 101 d~~~~lvGiiT~~Di~k~~ 119 (120)
T d1jr1a4 101 NENDELVAIIARTDLKKNR 119 (120)
T ss_dssp ETTTEEEEEECHHHHHHHH
T ss_pred cCCCEEEEEEEHHHhhhcc
Confidence 9999999999999998763
|