Psyllid ID: psy7458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ
Secondary Structure (PSIPRED)
cHHHHHHHHccHHHHHHHHHHHccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccHEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
efqvlhkeqgqtVRSRHLQYLLAFsywpaietrsgapniyevrsyslkpgtmiewGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKdlasrketresawrspgwdecvAYTVPLIREMQsrillptsfsptq
Flexible Loop (DISEMBL)
efqvlhkeqgqtvrsrHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETresawrspgwdeCVAYTVPLIREMqsrillptsfsptq
Low Complexity Region (SEG)
EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ
Disordered region (IsUnstruct)
**************SRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILL********
Disordered Region (DISOPRED)
EFQVL**EQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPT*
Disordered Region (DISEMBL)
************VRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLAS***********PGWDECVAYTVPLIREMQSRILLPTSFSPTQ
Disordered Region (DISPRO)
EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9VXK0	273	Protein NipSnap OS=Drosop	yes	N/A	0.992	0.505	0.741	2e-59
O55125	284	Protein NipSnap homolog 1	yes	N/A	0.992	0.485	0.604	5e-45
Q9BPW8	284	Protein NipSnap homolog 1	no	N/A	0.992	0.485	0.604	8e-45
Q9PU58	286	Protein NipSnap homolog 2	yes	N/A	0.992	0.482	0.582	9e-42
O75323	286	Protein NipSnap homolog 2	no	N/A	0.992	0.482	0.561	3e-40
O55126	281	Protein NipSnap homolog 2	no	N/A	0.992	0.491	0.546	4e-39
P34492	526	Putative NipSnap protein	yes	N/A	0.805	0.212	0.513	1e-30
Q54I58	223	Protein NipSnap homolog O	yes	N/A	0.741	0.461	0.291	4e-11
Q9CQE1	247	Protein NipSnap homolog 3	no	N/A	0.733	0.412	0.307	2e-06
Q5RAA9	247	Protein NipSnap homolog 3	no	N/A	0.726	0.408	0.300	2e-06

>sp|Q9VXK0|NIPSN_DROME Protein NipSnap OS=Drosophila melanogaster GN=Nipsnap PE=2 SV=2

 Score =  227 bits (578), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 119/139 (85%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           E+  L +E+ + +RSRHLQYLLAFSYWP I +R+G  NIYE+RSY L PGTMIEWGNNWA
Sbjct: 136 EYLSLMQERSKFLRSRHLQYLLAFSYWPQIASRTGK-NIYEMRSYRLTPGTMIEWGNNWA 194

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI +R++N+EAFAGFFSQ+GRLYNVHH WCYK L  RKETRE+AWRSPGWDECVAYTVP
Sbjct: 195 RAINYRKHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVAYTVP 254

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LIREM  R+L PT FSP+Q
Sbjct: 255 LIREMHCRVLAPTEFSPSQ 273

Drosophila melanogaster (taxid: 7227)

>sp|O55125|NIPS1_MOUSE Protein NipSnap homolog 1 OS=Mus musculus GN=Nipsnap1 PE=1 SV=1

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 102/139 (73%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           E+    KE+ + + SR  Q LL FS+W   + R+G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct: 147 EYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPRAG-PNIYELRTYKLKPGTMIEWGNNWA 205

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct: 206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265

Query: 121 LIREMQSRILLPTSFSPTQ 139
           L+R M+SRI++P   SP Q
Sbjct: 266 LVRHMESRIMIPLKISPLQ 284

Mus musculus (taxid: 10090)

>sp|Q9BPW8|NIPS1_HUMAN Protein NipSnap homolog 1 OS=Homo sapiens GN=NIPSNAP1 PE=1 SV=1

 Score =  178 bits (452), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 101/139 (72%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           E+    +E+ Q + SR  Q LL FS+W   + R G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct: 147 EYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMG-PNIYELRTYKLKPGTMIEWGNNWA 205

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct: 206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265

Query: 121 LIREMQSRILLPTSFSPTQ 139
           L+R M+SRI++P   SP Q
Sbjct: 266 LVRHMESRIMIPLKISPLQ 284

Homo sapiens (taxid: 9606)

>sp|Q9PU58|NIPS2_DANRE Protein NipSnap homolog 2 OS=Danio rerio GN=gbas PE=2 SV=2

 Score =  168 bits (426), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           EF     E+G+ + SR  Q LL FS+W     R G PNIYE+RSY L+PGTMIEWGN WA
Sbjct: 149 EFLEYRSERGKMLLSRRNQLLLEFSFWNEPVPRDG-PNIYELRSYQLRPGTMIEWGNYWA 207

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI +R++N EA  GFFSQ+G LY VHH W YKDL SR++TR +AW+  GWDE V YTVP
Sbjct: 208 RAIGYRQHNREAVGGFFSQIGDLYMVHHLWAYKDLQSREDTRNAAWQHEGWDEVVYYTVP 267

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LI+ M+SRI++P   SP +
Sbjct: 268 LIQHMESRIMIPLKNSPLK 286

Danio rerio (taxid: 7955)

>sp|O75323|NIPS2_HUMAN Protein NipSnap homolog 2 OS=Homo sapiens GN=GBAS PE=1 SV=1

 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 98/139 (70%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           EF    K +   + SR  Q LL FS+W     RSG PNIYE+RSY L+PGTMIEWGN WA
Sbjct: 149 EFLEFRKARSDMLLSRKNQLLLEFSFWNEPVPRSG-PNIYELRSYQLRPGTMIEWGNYWA 207

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI  R++ +EA  GFFSQ+G+LY VHH W Y+DL +R++ R +AW   GW+E V YTVP
Sbjct: 208 RAIRFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVP 267

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LI+EM+SRI++P   SP Q
Sbjct: 268 LIQEMESRIMIPLKTSPLQ 286

Homo sapiens (taxid: 9606)

>sp|O55126|NIPS2_MOUSE Protein NipSnap homolog 2 OS=Mus musculus GN=Gbas PE=2 SV=1

 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/139 (54%), Positives = 97/139 (69%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           EF    K +   + SR  Q LL FS+W     R G PNIYE+RSY L+PGTMIEWGN WA
Sbjct: 144 EFVNFRKARSDMLLSRKNQLLLEFSFWNEPVPRPG-PNIYELRSYQLRPGTMIEWGNYWA 202

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI  R++++EA  GFFSQ+G+LY V H W Y+DL +R++ R +AW   GW+E V YTVP
Sbjct: 203 RAIRFRQDSNEAIGGFFSQIGQLYMVDHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVP 262

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LI+EM+SRI++P   SP Q
Sbjct: 263 LIQEMESRIMIPLKTSPLQ 281

Mus musculus (taxid: 10090)

>sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1 OS=Caenorhabditis elegans GN=K02D10.1 PE=2 SV=4

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 81/115 (70%), Gaps = 3/115 (2%)

Query: 23  AFSYWPAIETRSGAPN-IYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVG 81
           +FSYW   E R   PN +Y++RSY L+PGTMI+W + WA+ I +RR  ++   GFF+QVG
Sbjct: 411 SFSYWREPEQR--PPNHVYDLRSYVLQPGTMIDWASAWAKGIQYRREANQDVGGFFAQVG 468

Query: 82  RLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFS 136
           +LY V+H W Y  ++ R +TR + W  PGWD  VA TVPLI++MQS+IL PT +S
Sbjct: 469 QLYVVYHIWAYPSMSGRNDTRHATWAKPGWDATVANTVPLIKKMQSKILTPTKYS 523

Caenorhabditis elegans (taxid: 6239)

>sp|Q54I58|NIPSN_DICDI Protein NipSnap homolog OS=Dictyostelium discoideum GN=nipsnap PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%)

Query: 33  RSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCY 92
           +S    ++E+R+Y  KPG + +W  ++      R+   E    F+S+ G L  + H W Y
Sbjct: 121 KSNENKVWELRTYQSKPGKLGQWAIDFTTGFAERKKISEPVGVFYSEFGPLNTIVHLWPY 180

Query: 93  KDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSF 135
           K    R   R+ A ++P W E VA T   +  M+S+ ++P   
Sbjct: 181 KSFEDRFRIRDLALKNPVWVETVAKTTANLDSMESKTIIPVKL 223

Dictyostelium discoideum (taxid: 44689)

>sp|Q9CQE1|NPS3B_MOUSE Protein NipSnap homolog 3B OS=Mus musculus GN=Nipsnap3b PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 38  NIYEVRSYSLKPGTMIEWGNNWARAI-THRRNNDEAFAGFF-SQVGRLYNVHHFWCYKDL 95
            +YE+ ++ +KPG    WGN + RA+  H         G F ++ G L  VH  W  +  
Sbjct: 144 GVYELATFQMKPGGPALWGNAFKRAVNAHVELGYSTLVGVFHTEYGALNRVHVLWWNESA 203

Query: 96  ASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ 139
            SR   R  +   P     V  +V  +   Q+  L+PTSFSP +
Sbjct: 204 DSRAAGRHWSHEDPRVVAAVRESVSYLESQQNTFLIPTSFSPLK 247

Mus musculus (taxid: 10090)

>sp|Q5RAA9|NPS3A_PONAB Protein NipSnap homolog 3A OS=Pongo abelii GN=NIPSNAP3A PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 39  IYEVRSYSLKPGTMIEWGNNWARAI-THRRNNDEAFAGFF-SQVGRLYNVHHFWCYKDLA 96
           +YE+ ++ +KPG    WG+ + RA+  H         G F ++ G L  VH  W  +   
Sbjct: 145 VYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESAD 204

Query: 97  SRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ 139
           SR   R  +   P     V  +V  +   Q+ +L+PTSFSP +
Sbjct: 205 SRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK 247

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
156542470	283	PREDICTED: protein NipSnap-like [Nasonia	0.985	0.484	0.826	2e-62
91084897	268	PREDICTED: similar to nipsnap [Tribolium	0.992	0.514	0.776	2e-61
332023434	284	Protein NipSnap [Acromyrmex echinatior]	0.985	0.482	0.797	2e-61
193573547	286	PREDICTED: protein NipSnap-like [Acyrtho	0.992	0.482	0.784	8e-61
307174673	284	Protein NipSnap [Camponotus floridanus]	0.985	0.482	0.789	1e-60
170056390	273	conserved hypothetical protein [Culex qu	0.992	0.505	0.784	2e-60
347969455	272	AGAP003200-PA [Anopheles gambiae str. PE	0.964	0.492	0.8	2e-60
157117700	273	nipsnap [Aedes aegypti] gi|108884561|gb|	0.992	0.505	0.776	3e-60
322790216	272	hypothetical protein SINV_04987 [Solenop	0.964	0.492	0.807	4e-60
332376366	269	unknown [Dendroctonus ponderosae]	0.992	0.513	0.762	4e-60

>gi|156542470|ref|XP_001599415.1| PREDICTED: protein NipSnap-like [Nasonia vitripennis]

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 122/138 (88%), Gaps = 1/138 (0%)

Query: 2   FQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWAR 61
           +Q L KE+G  +RSRHLQYLLAFSYWP I TR G+ N YE+RSYSLKPGTMIEWGNNWAR
Sbjct: 147 YQKLLKERGNYLRSRHLQYLLAFSYWPPIVTRDGS-NKYEIRSYSLKPGTMIEWGNNWAR 205

Query: 62  AITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPL 121
           A+  RRNNDEAFAGFFSQ+GRLYNVHH WCYKDL SRKETRESAWRSPGWDECVAYTVPL
Sbjct: 206 AVNFRRNNDEAFAGFFSQIGRLYNVHHIWCYKDLQSRKETRESAWRSPGWDECVAYTVPL 265

Query: 122 IREMQSRILLPTSFSPTQ 139
           IREM  RIL PTSFSPT+
Sbjct: 266 IREMHCRILNPTSFSPTK 283

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084897|ref|XP_969410.1| PREDICTED: similar to nipsnap [Tribolium castaneum] gi|270008564|gb|EFA05012.1| hypothetical protein TcasGA2_TC015094 [Tribolium castaneum]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 122/139 (87%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           +F+ + ++QG+ VRSRHLQYLLAFSYWP I+ R    NIYE+RSY+LKPGTMIEWGNNWA
Sbjct: 131 DFKKISEDQGKVVRSRHLQYLLAFSYWPQIQLRKPC-NIYEIRSYALKPGTMIEWGNNWA 189

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI  R+NNDEAFAGFFSQ+GRLYNVHH WCY+DL  RKETRESAWRSPGWDECVAYTVP
Sbjct: 190 RAINFRQNNDEAFAGFFSQIGRLYNVHHIWCYEDLNKRKETRESAWRSPGWDECVAYTVP 249

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LIREM  RI++PT FSPTQ
Sbjct: 250 LIREMHCRIMVPTEFSPTQ 268

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023434|gb|EGI63677.1| Protein NipSnap [Acromyrmex echinatior]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 121/138 (87%), Gaps = 1/138 (0%)

Query: 2   FQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWAR 61
           +Q L  E+G  +RSRHLQYLLAFSYWP +  R G PN YE+RSYSL+PGTMIEWGNNWA+
Sbjct: 148 YQQLQTERGNYLRSRHLQYLLAFSYWPPLTKRKG-PNKYEIRSYSLQPGTMIEWGNNWAK 206

Query: 62  AITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPL 121
           AI +RRNNDE FAG+FSQ+GRLYNVHH WCYKDL SRKETRESAWRSPGWDECVAYTVPL
Sbjct: 207 AINYRRNNDEPFAGYFSQIGRLYNVHHIWCYKDLQSRKETRESAWRSPGWDECVAYTVPL 266

Query: 122 IREMQSRILLPTSFSPTQ 139
           IREM SRIL PTSFSPT+
Sbjct: 267 IREMHSRILNPTSFSPTK 284

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193573547|ref|XP_001949967.1| PREDICTED: protein NipSnap-like [Acyrthosiphon pisum]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 123/139 (88%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           E+  L  + GQ +RSRHLQYLLAFS+WP+IE +SG+ NIYE+RSYSLKPGTMIEWGNNWA
Sbjct: 149 EYTKLRNQCGQFLRSRHLQYLLAFSFWPSIELKSGS-NIYEIRSYSLKPGTMIEWGNNWA 207

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI HRR+NDE FAGFFSQVGRLYNVHHFWCYK+L  R +TRE+AW SPGWDECVAYTVP
Sbjct: 208 RAINHRRSNDEPFAGFFSQVGRLYNVHHFWCYKNLEVRTQTREAAWMSPGWDECVAYTVP 267

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LI+EMQS+IL PT FSPTQ
Sbjct: 268 LIKEMQSKILHPTPFSPTQ 286

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174673|gb|EFN65056.1| Protein NipSnap [Camponotus floridanus]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 122/138 (88%), Gaps = 1/138 (0%)

Query: 2   FQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWAR 61
           +Q L +E+G  +RSRHLQYLLAFS+WP +  R G+ N YE+RSYSLKPGTMIEWGNNWA+
Sbjct: 148 YQRLLRERGNYLRSRHLQYLLAFSFWPPLVKRKGS-NKYEIRSYSLKPGTMIEWGNNWAK 206

Query: 62  AITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPL 121
           AI +RRNNDE FAG+FSQ+GRLYNVHH WCYKDL SRKETRESAWRSPGWDECVAYTVPL
Sbjct: 207 AINYRRNNDEPFAGYFSQIGRLYNVHHIWCYKDLQSRKETRESAWRSPGWDECVAYTVPL 266

Query: 122 IREMQSRILLPTSFSPTQ 139
           IREM SRIL PTSFSPT+
Sbjct: 267 IREMHSRILSPTSFSPTK 284

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056390|ref|XP_001864008.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876105|gb|EDS39488.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 120/139 (86%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           ++  L +E+G  +RSRHLQYLLAFSYWP +  R    NIYE+RSY LKPGTMIEWGNNWA
Sbjct: 136 DYVQLTQERGTFLRSRHLQYLLAFSYWPQLALRQDK-NIYEIRSYRLKPGTMIEWGNNWA 194

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI +R+NNDEAFAGFFSQ+GRLYNVHH WCYKDL SRKETRESAWRSPGWDECVAYTVP
Sbjct: 195 RAINYRQNNDEAFAGFFSQIGRLYNVHHIWCYKDLLSRKETRESAWRSPGWDECVAYTVP 254

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LIREM +RIL PT FSPTQ
Sbjct: 255 LIREMHTRILTPTDFSPTQ 273

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969455|ref|XP_312904.3| AGAP003200-PA [Anopheles gambiae str. PEST] gi|333468531|gb|EAA44790.3| AGAP003200-PA [Anopheles gambiae str. PEST]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/135 (80%), Positives = 118/135 (87%), Gaps = 1/135 (0%)

Query: 5   LHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAIT 64
           L +E+G  +RSRHLQYLLAFSYWP ++ R G  NIYE+RSY LKPGTMIEWGNNWARAI 
Sbjct: 139 LMQERGTFLRSRHLQYLLAFSYWPQLQLREGK-NIYEIRSYRLKPGTMIEWGNNWARAIN 197

Query: 65  HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIRE 124
           HR+NN+EAFAG+FSQ+GRLYNVHH WCYKDL  RKETRESAWRSPGWDECVAYTVPLIRE
Sbjct: 198 HRQNNNEAFAGYFSQIGRLYNVHHIWCYKDLQGRKETRESAWRSPGWDECVAYTVPLIRE 257

Query: 125 MQSRILLPTSFSPTQ 139
           M  RIL PT FSPTQ
Sbjct: 258 MHCRILAPTEFSPTQ 272

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117700|ref|XP_001658894.1| nipsnap [Aedes aegypti] gi|108884561|gb|EAT48786.1| AAEL000159-PA [Aedes aegypti]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 120/139 (86%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           ++  L +E+G  +RSRHLQYLLAFSYWP +  R    NIYE+RSY LKPGTMIEWGNNWA
Sbjct: 136 DYVKLTQERGTYLRSRHLQYLLAFSYWPQLALRKDK-NIYEIRSYRLKPGTMIEWGNNWA 194

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI +R+NNDEAFAGFFSQ+GRLYNVHH WCYKDL SRKETRESAWRSPGWDECVAYTVP
Sbjct: 195 RAINYRQNNDEAFAGFFSQIGRLYNVHHIWCYKDLLSRKETRESAWRSPGWDECVAYTVP 254

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LIREM  RIL+PT FSPT+
Sbjct: 255 LIREMHCRILIPTEFSPTK 273

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790216|gb|EFZ15215.1| hypothetical protein SINV_04987 [Solenopsis invicta]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 119/135 (88%), Gaps = 1/135 (0%)

Query: 5   LHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAIT 64
           L +E+G  +RSRHLQYLLAFSYWP IE R  + N YE+RSYSLKPGTMIEWGNNWA+AI 
Sbjct: 139 LQRERGNFLRSRHLQYLLAFSYWPPIEKRKDS-NKYEIRSYSLKPGTMIEWGNNWAKAIN 197

Query: 65  HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIRE 124
           +RRNNDE FAG+FSQ+GRLYNVHH WCYK+L SRKETRESAWRSPGWDECVAYTVPLIRE
Sbjct: 198 YRRNNDEPFAGYFSQIGRLYNVHHIWCYKNLQSRKETRESAWRSPGWDECVAYTVPLIRE 257

Query: 125 MQSRILLPTSFSPTQ 139
           M  RIL PTSFSPTQ
Sbjct: 258 MHCRILNPTSFSPTQ 272

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376366|gb|AEE63323.1| unknown [Dendroctonus ponderosae]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/139 (76%), Positives = 120/139 (86%), Gaps = 1/139 (0%)

Query: 1   EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
           +++ L  EQG+ VR+RHLQYLLAFSYWP I  R    NIYE+RSY+LKPGTMIEWGNNWA
Sbjct: 132 DYEKLRVEQGKLVRARHLQYLLAFSYWPQILLRE-TKNIYEIRSYALKPGTMIEWGNNWA 190

Query: 61  RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
           RAI  R+NNDEAFAGFFSQ+GRLYNVHH WCY+DL  RKETRESAWRSPGWDECVAYTVP
Sbjct: 191 RAINFRQNNDEAFAGFFSQIGRLYNVHHIWCYEDLNKRKETRESAWRSPGWDECVAYTVP 250

Query: 121 LIREMQSRILLPTSFSPTQ 139
           LIREM  R+++PT FSPT+
Sbjct: 251 LIREMHCRVMVPTEFSPTK 269

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
FB|FBgn0030724	273	Nipsnap "Nipsnap" [Drosophila	0.992	0.505	0.741	2.5e-56
UNIPROTKB|F1MSQ7	284	NIPSNAP1 "Uncharacterized prot	0.992	0.485	0.611	1.9e-44
UNIPROTKB|E2RQ87	285	NIPSNAP1 "Uncharacterized prot	0.992	0.484	0.611	3.1e-44
UNIPROTKB|F1RFF5	284	NIPSNAP1 "Uncharacterized prot	0.992	0.485	0.611	3.1e-44
MGI|MGI:1278344	284	Nipsnap1 "4-nitrophenylphospha	0.992	0.485	0.604	8.1e-44
RGD|1310419	283	Nipsnap1 "nipsnap homolog 1 (C	0.992	0.487	0.604	8.1e-44
UNIPROTKB|G3V728	284	Nipsnap1 "Protein Nipsnap1" [R	0.992	0.485	0.604	8.1e-44
UNIPROTKB|Q9BPW8	284	NIPSNAP1 "Protein NipSnap homo	0.992	0.485	0.604	1e-43
UNIPROTKB|F1ND72	251	NIPSNAP1 "Uncharacterized prot	0.992	0.549	0.611	4.5e-43
UNIPROTKB|F1NZ68	284	GBAS "Uncharacterized protein"	0.992	0.485	0.589	1.9e-42

FB|FBgn0030724 Nipsnap "Nipsnap" [Drosophila melanogaster (taxid:7227)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 103/139 (74%), Positives = 119/139 (85%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+  L +E+ + +RSRHLQYLLAFSYWP I +R+G  NIYE+RSY L PGTMIEWGNNWA
Sbjct:   136 EYLSLMQERSKFLRSRHLQYLLAFSYWPQIASRTGK-NIYEMRSYRLTPGTMIEWGNNWA 194

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R++N+EAFAGFFSQ+GRLYNVHH WCYK L  RKETRE+AWRSPGWDECVAYTVP
Sbjct:   195 RAINYRKHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVAYTVP 254

Query:   121 LIREMQSRILLPTSFSPTQ 139
             LIREM  R+L PT FSP+Q
Sbjct:   255 LIREMHCRVLAPTEFSPSQ 273

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1MSQ7 NIPSNAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 85/139 (61%), Positives = 103/139 (74%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+  + KE+ Q + SR  Q LL FS+W   + R+G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   147 EYLEIRKERSQMLLSRRNQLLLEFSFWNEPQPRAG-PNIYELRTYKLKPGTMIEWGNNWA 205

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265

Query:   121 LIREMQSRILLPTSFSPTQ 139
             L+R M+SRI++P   SP Q
Sbjct:   266 LVRHMESRIMIPLKISPLQ 284

GO:0097060 "synaptic membrane" evidence=IEA

GO:0042165 "neurotransmitter binding" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|E2RQ87 NIPSNAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 85/139 (61%), Positives = 102/139 (73%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+    KE+ Q + SR  Q LL FS+W   + R+G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   148 EYLEFRKERSQMLLSRRNQMLLEFSFWNEPQPRAG-PNIYELRTYKLKPGTMIEWGNNWA 206

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   207 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 266

Query:   121 LIREMQSRILLPTSFSPTQ 139
             L+R M+SRI++P   SP Q
Sbjct:   267 LVRHMESRIMIPLKISPLQ 285

GO:0097060 "synaptic membrane" evidence=IEA

GO:0042165 "neurotransmitter binding" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1RFF5 NIPSNAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 85/139 (61%), Positives = 102/139 (73%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+    KE+ Q + SR  Q LL FS+W   + R+G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   147 EYLEFRKERSQMLLSRRNQMLLEFSFWNEPQPRAG-PNIYELRTYKLKPGTMIEWGNNWA 205

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265

Query:   121 LIREMQSRILLPTSFSPTQ 139
             L+R M+SRI++P   SP Q
Sbjct:   266 LVRHMESRIMIPLKISPLQ 284

GO:0097060 "synaptic membrane" evidence=IEA

GO:0042165 "neurotransmitter binding" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:1278344 Nipsnap1 "4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 84/139 (60%), Positives = 102/139 (73%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+    KE+ + + SR  Q LL FS+W   + R+G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   147 EYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPRAG-PNIYELRTYKLKPGTMIEWGNNWA 205

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265

Query:   121 LIREMQSRILLPTSFSPTQ 139
             L+R M+SRI++P   SP Q
Sbjct:   266 LVRHMESRIMIPLKISPLQ 284

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019233 "sensory perception of pain" evidence=IMP

GO:0042165 "neurotransmitter binding" evidence=IDA

GO:0097060 "synaptic membrane" evidence=IDA

RGD|1310419 Nipsnap1 "nipsnap homolog 1 (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 84/139 (60%), Positives = 102/139 (73%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+    KE+ + + SR  Q LL FS+W   + R+G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   146 EYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPRAG-PNIYELRTYKLKPGTMIEWGNNWA 204

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   205 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 264

Query:   121 LIREMQSRILLPTSFSPTQ 139
             L+R M+SRI++P   SP Q
Sbjct:   265 LVRHMESRIMIPLKISPLQ 283

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0019233 "sensory perception of pain" evidence=ISO

GO:0042165 "neurotransmitter binding" evidence=ISO

GO:0097060 "synaptic membrane" evidence=ISO

UNIPROTKB|G3V728 Nipsnap1 "Protein Nipsnap1" [Rattus norvegicus (taxid:10116)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 84/139 (60%), Positives = 102/139 (73%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+    KE+ + + SR  Q LL FS+W   + R+G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   147 EYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPRAG-PNIYELRTYKLKPGTMIEWGNNWA 205

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265

Query:   121 LIREMQSRILLPTSFSPTQ 139
             L+R M+SRI++P   SP Q
Sbjct:   266 LVRHMESRIMIPLKISPLQ 284

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0042165 "neurotransmitter binding" evidence=IEA

GO:0097060 "synaptic membrane" evidence=IEA

UNIPROTKB|Q9BPW8 NIPSNAP1 "Protein NipSnap homolog 1" [Homo sapiens (taxid:9606)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 84/139 (60%), Positives = 101/139 (72%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+    +E+ Q + SR  Q LL FS+W   + R G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   147 EYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMG-PNIYELRTYKLKPGTMIEWGNNWA 205

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265

Query:   121 LIREMQSRILLPTSFSPTQ 139
             L+R M+SRI++P   SP Q
Sbjct:   266 LVRHMESRIMIPLKISPLQ 284

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0042165 "neurotransmitter binding" evidence=IEA

GO:0097060 "synaptic membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|F1ND72 NIPSNAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 85/139 (61%), Positives = 100/139 (71%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             E+    KE+ + + SR  Q LL FS+W     R G PNIYE+R+Y LKPGTMIEWGNNWA
Sbjct:   114 EYLDFRKERSRMLLSRRNQLLLEFSFWNEPLPRKG-PNIYELRTYKLKPGTMIEWGNNWA 172

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI +R+ N EA  GFFSQ+G LY VHH W YKDL SR+ETR +AWR  GWDE V YTVP
Sbjct:   173 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 232

Query:   121 LIREMQSRILLPTSFSPTQ 139
             LIR M+SRI++P   SP Q
Sbjct:   233 LIRTMESRIMIPLKISPLQ 251

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0042165 "neurotransmitter binding" evidence=IEA

GO:0097060 "synaptic membrane" evidence=IEA

UNIPROTKB|F1NZ68 GBAS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 82/139 (58%), Positives = 101/139 (72%)

Query:     1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA 60
             EF    KE+G  + SR  Q LL FS+W     R G PNIYE+RSY L+PGTMIEWGN WA
Sbjct:   147 EFTEFRKERGNMLLSRKNQLLLEFSFWNEPVPREG-PNIYELRSYQLRPGTMIEWGNYWA 205

Query:    61 RAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVP 120
             RAI  R++++EA  GFFSQ+G+LY VHH W YKDL +R++ R +AW  PGWDE V YTVP
Sbjct:   206 RAIRFRQDSNEAVGGFFSQIGQLYMVHHLWAYKDLQTREDIRNAAWHKPGWDELVYYTVP 265

Query:   121 LIREMQSRILLPTSFSPTQ 139
             LI+EM+SRI++P   SP Q
Sbjct:   266 LIQEMESRIMIPLKISPLQ 284

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:2000984 "negative regulation of ATP citrate synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34492	YMQ1_CAEEL	No assigned EC number	0.5130	0.8057	0.2129	yes	N/A
Q9PU58	NIPS2_DANRE	No assigned EC number	0.5827	0.9928	0.4825	yes	N/A
O55125	NIPS1_MOUSE	No assigned EC number	0.6043	0.9928	0.4859	yes	N/A
Q9VXK0	NIPSN_DROME	No assigned EC number	0.7410	0.9928	0.5054	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
pfam07978	102	pfam07978, NIPSNAP, NIPSNAP	2e-31

>gnl|CDD|191913 pfam07978, NIPSNAP, NIPSNAP

 Score =  107 bits (269), Expect = 2e-31
 Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 40  YEVRSYSLKPGTMIEWGNNWARAITHR--RNNDEAFAGFFSQVGRLYNVHHFWCYKDLAS 97
           YE+R+Y+LKPG + E+   +ARA   R  ++  E    F S++G L  V+H W +  LA+
Sbjct: 1   YELRTYTLKPGKLAEFLERFARAWIPRQEKHGGELIGYFTSEIGPLNQVYHLWAFDSLAA 60

Query: 98  RKETRESAWRSPGWDECVAYTVPL--IREMQSRILLPTSFSP 137
           R+  R +    P W   V   V L  I  M+SRIL PT FSP
Sbjct: 61  REAYRAALAADPDWVAAVREAVDLDIIDSMESRILRPTPFSP 102

Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG2883|consensus	253		99.97
PF07978	102	NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of	99.97
KOG2883|consensus	253		99.83
PF03992	78	ABM: Antibiotic biosynthesis monooxygenase; InterP	97.51
PRK10486	96	autoinducer-2 (AI-2) modifying protein LsrG; Provi	96.03
COG1359	100	Uncharacterized conserved protein [Function unknow	95.55
COG3254	105	Uncharacterized conserved protein [Function unknow	92.02
COG2329	105	Uncharacterized enzyme involved in biosynthesis of	88.36
PF05336	106	DUF718: Domain of unknown function (DUF718); Inter	87.86
PF07237	103	DUF1428: Protein of unknown function (DUF1428); In	87.41
PF07045	65	DUF1330: Protein of unknown function (DUF1330); In	86.83
PRK13315	107	heme-degrading monooxygenase IsdG; Provisional	82.84
PRK13313	108	heme-degrading monooxygenase IsdI; Provisional	81.36
PRK13314	107	heme-degrading monooxygenase IsdG; Provisional	81.23

>KOG2883|consensus

Probab=99.97  E-value=1.3e-32  Score=203.69  Aligned_cols=138  Identities=64%  Similarity=1.114  Sum_probs=133.4

Q ss_pred             ChHHhHHHhcCcccccccceecccCCCCcccCCCCCCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeee
Q psy7458           1 EFQVLHKEQGQTVRSRHLQYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQV   80 (139)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~   80 (139)
                      ||+|+..+.-+|+.++.++++..|++|+.+.++.. +.|||||+|.++||++-+|.++|+++|..|.+..+.||.|++++
T Consensus       116 e~le~~~~rs~~l~sr~nq~ll~fs~W~epe~r~g-~nvYELrsy~lkPGtmieWgn~waRaI~yr~~~neavggFfsqi  194 (253)
T KOG2883|consen  116 EYLEQSIERSKALISRKNQELLYFSYWSEPEKRPG-ENVYELRSYQLKPGTMIEWGNAWARAINYRVENNEAVGGFFSQI  194 (253)
T ss_pred             HHHHHHhHHHHHHHhhhhhheeeeeccCCcCCCCC-CCceeeeeEecCCCchhHHHHHHHHHHHHHHhcchhhhhHHHhh
Confidence            68999999999999999999999999999988888 89999999999999999999999999999988889999999999


Q ss_pred             CCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhcccccceeeeeeeeeecCCCCCC
Q psy7458          81 GRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ  139 (139)
Q Consensus        81 G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~~~~i~~~~s~ll~p~~fsp~~  139 (139)
                      |.++.|+|||.|+|++.|++.|++...+|.|-+.+....|+|.+|+|.||.|+.|||++
T Consensus       195 GeLy~VhhlWay~slqsR~~tR~aaw~kpgwda~V~yTVpli~~mqsriliP~k~Splq  253 (253)
T KOG2883|consen  195 GELYVVHHLWAYKSLQSRADTRHAAWRKPGWDAAVAYTVPLIREMQSRILIPTKFSPLQ  253 (253)
T ss_pred             hheeEEEEEEecCccchhhhhhhhhhcCCchhHHHHHhhHHHHHhhhheecccccCCCC
Confidence            99999999999999999999999999999999999989999999999999999999985

>PF07978 NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of this family include many hypothetical proteins

Probab=99.97  E-value=1.9e-30  Score=173.75  Aligned_cols=98  Identities=42%  Similarity=0.782  Sum_probs=84.1

Q ss_pred             EEEEEEEecCCCHHHHHHHHHH-HhHhhh-hcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhc
Q psy7458          40 YEVRSYSLKPGTMIEWGNNWAR-AITHRR-NNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAY  117 (139)
Q Consensus        40 yElRtY~lkpg~~~~~~~~~~~-~l~~~~-~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~  117 (139)
                      ||||+|+++||++++|++.|++ .++... .++++||+|.+++|++|+|+|||.|+|+++|++.++++++||+|++....
T Consensus         1 yElr~Y~l~pg~~~~~~~~~~~~~~~~~~~~g~~lvG~~~~~~G~~~~~~~l~~y~~~~~r~~~~~a~~~d~~w~~~~~~   80 (102)
T PF07978_consen    1 YELRTYTLKPGKMDEFLELFEEALIPRQKKHGGKLVGYWVTEVGPLNQVVHLWSYDDLAAREEAREALYADPEWKAYVAE   80 (102)
T ss_dssp             EEEEEEEESTT-HHHHHHHHHHCCHHHHHHHH-EEEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHHHhCCceeEEEEeccCCCceEEEEEEcCCHHHHHHHHHHHHcCchHHHHHHh
Confidence            8999999999999999999998 455544 45799999999999999999999999999999999999999999887766


Q ss_pred             cccc--ceeeeeeeeeecCCCC
Q psy7458         118 TVPL--IREMQSRILLPTSFSP  137 (139)
Q Consensus       118 ~~~~--i~~~~s~ll~p~~fsp  137 (139)
                      ..++  +.++++++|.|++|||
T Consensus        81 ~~~~~~i~~~~~~~l~p~~~sp  102 (102)
T PF07978_consen   81 ARPLPLIRSQESRLLRPTPFSP  102 (102)
T ss_dssp             CCTT--EEEEEEEEEEE-TT-S
T ss_pred             ccccCcEEEEEEEEeEECCCCC
Confidence            6566  9999999999999998

It also includes members of the NIPSNAP family, which have putative roles in vesicular transport []. This domain is often found in duplicate.; PDB: 1VQY_D 2AP6_H.

>KOG2883|consensus

Probab=99.83  E-value=1.2e-20  Score=140.16  Aligned_cols=108  Identities=21%  Similarity=0.286  Sum_probs=95.8

Q ss_pred             ccCCCCCCceEEEEEEEecCCCHHHHHHHHHHHhHhhh--hc-CceeEEEEeeeC-CcceEEEEEEcCC-HHHHHHHHHH
Q psy7458          30 IETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRR--NN-DEAFAGFFSQVG-RLYNVHHFWCYKD-LASRKETRES  104 (139)
Q Consensus        30 ~~~~~~~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~--~~-~~lvG~w~te~G-~~n~v~~lw~y~~-~~~r~~~r~~  104 (139)
                      +.+.+.++-+||+|||.+||+.+++|++.+++.++...  +. ++|||.|++++| +.||++|||+|++ ++++++++++
T Consensus        31 lls~ke~~~~Ye~~thnvkP~~m~Ay~~~~kk~~~~~~~~~~~ceLVgsWt~~yG~~~dqa~HlWry~ggy~~~~e~~~~  110 (253)
T KOG2883|consen   31 LLSRKEDGTFYEFRTHNVKPSNMDAYLENLKKNIHLINEKNYSCELVGSWTVEYGGRTDQAFHLWRYDGGYEHRDEVRKA  110 (253)
T ss_pred             hcccccccceeeeeecccChhhHHHHHHHHHHHHHhhhccCCCceeEEEEEEeeccccceeEEEEeecCCcchHHHHHHH
Confidence            34444457899999999999999999999999877653  33 699999999999 6999999999997 9999999999


Q ss_pred             hccCCChhhhhhcccccceeeeeeeeeecCCCC
Q psy7458         105 AWRSPGWDECVAYTVPLIREMQSRILLPTSFSP  137 (139)
Q Consensus       105 ~~~~~~w~~~~~~~~~~i~~~~s~ll~p~~fsp  137 (139)
                      +.+|++|.++......++.+.+++++..++||+
T Consensus       111 l~n~ke~le~~~~rs~~l~sr~nq~ll~fs~W~  143 (253)
T KOG2883|consen  111 LANDKEYLEQSIERSKALISRKNQELLYFSYWS  143 (253)
T ss_pred             HhcCHHHHHHHhHHHHHHHhhhhhheeeeeccC
Confidence            999999999887777888899999999999876

>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen

Probab=97.51  E-value=0.0024  Score=39.41  Aligned_cols=74  Identities=11%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhH-hhhhcCceeEEEEee-eCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAIT-HRRNNDEAFAGFFSQ-VGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~-~~~~~~~lvG~w~te-~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      ||.-+.+++++||+.++|++.+.+... ...+....+++.... .++.+.++.+-.|+|.++..+.    .++|.++++.
T Consensus         1 Mi~v~~~~~v~~~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~W~s~~a~~~~----~~s~~~~~~~   76 (78)
T PF03992_consen    1 MITVIVKFKVKPGKEEEFLAAFQELAEATLRKEPGCLSYELYRSLDDPNRYVIVERWESEEAFQAH----FKSPEFKAFQ   76 (78)
T ss_dssp             EEEEEEEEEEETTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSSTTEEEEEEEESSHHHHHHH----HTSHHHHHHH
T ss_pred             CEEEEEEEEeCcchHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCEEEEEEEECCHHHHHHH----HcCHHHHHHH
Confidence            678889999999999999999999665 423444555555444 5667899999999998776555    4666666643

The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....

>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional

Probab=96.03  E-value=0.096  Score=34.40  Aligned_cols=80  Identities=14%  Similarity=0.130  Sum_probs=58.3

Q ss_pred             EEEEEEecCCCHHHHHHHHHHHhH-hhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhccc
Q psy7458          41 EVRSYSLKPGTMIEWGNNWARAIT-HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTV  119 (139)
Q Consensus        41 ElRtY~lkpg~~~~~~~~~~~~l~-~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~~  119 (139)
                      -+-..++|||+.++|.+...+.+. .+..-|.+.-.......+.|.++-+=.|.|.++.++.    .+.|-.+++.....
T Consensus         4 ~ia~~~~kpg~~~~~~~~l~~~~~~sr~EpGcl~y~~~~~~~~p~~~~~~E~w~d~~Al~~H----~~tph~k~f~~~~~   79 (96)
T PRK10486          4 TLVEINVKEDKVDEFIEVFRQNHLGSIQEPGNLRFDVLQDPEVPTRFYIYEAYKDEAAVAFH----KTTPHYKTCVEKLE   79 (96)
T ss_pred             EEEEEEECcchHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCEEEEEEEeCCHHHHHHH----hcCHHHHHHHHHHH
Confidence            345678999999999999988554 4443444443334444557889988899999998877    58888888887766


Q ss_pred             cccee
Q psy7458         120 PLIRE  124 (139)
Q Consensus       120 ~~i~~  124 (139)
                      +++.+
T Consensus        80 ~ll~~   84 (96)
T PRK10486         80 PLMTG   84 (96)
T ss_pred             HHHhC
Confidence            66554

>COG1359 Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.39  Score=31.69  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHh-HhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAI-THRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l-~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      +|.-+-+...+||+.++|.+.+...+ +.+..-|-+.--++...+..+.++-+=.|.|.++.+..    .+.|..+++.+
T Consensus         3 ~i~~~~~~~~~~~~~~~~~~~~~~lv~~sr~EeGcl~Y~l~~d~~~~~~~~~~E~w~d~~A~~~H----~~s~h~~~~~~   78 (100)
T COG1359           3 MVIVLARFKPKPGHREEFLDLLAELVEASRAEEGCLSYELHRDPDNPGRFVLIEVWEDEAALDAH----LQSPHFQAFVA   78 (100)
T ss_pred             EEEEEEEEEeCcchHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCCEEEEEEEECCHHHHHHH----hCCHHHHHHHH
Confidence            45555667788888999999999854 45654455555555555567888888889999888887    48899999888


Q ss_pred             ccccccee-eeeeeeee
Q psy7458         117 YTVPLIRE-MQSRILLP  132 (139)
Q Consensus       117 ~~~~~i~~-~~s~ll~p  132 (139)
                      +..+++.. .....+.+
T Consensus        79 ~~~~l~~~~~~i~~~~~   95 (100)
T COG1359          79 ALPPLLAGPPEIRVLEP   95 (100)
T ss_pred             hChHhhcCCcEEEEEee
Confidence            88887766 44444444

>COG3254 Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=0.76  Score=30.95  Aligned_cols=71  Identities=15%  Similarity=0.270  Sum_probs=46.4

Q ss_pred             EEEecCCCHHHHHHHHHH----HhHhhhhcC-ceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          44 SYSLKPGTMIEWGNNWAR----AITHRRNND-EAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        44 tY~lkpg~~~~~~~~~~~----~l~~~~~~~-~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      +-.|+||+.++|.++-.+    .+...+..| +.-..|  ..|+.|.+.-.|.|.|.++.-+..++--.+..|.++..
T Consensus         7 ~m~l~p~~~eEYk~rH~~vWPE~~a~lk~agi~nYSIf--Lde~~n~lFgy~E~~d~~a~m~~~a~~ev~qkWw~~m~   82 (105)
T COG3254           7 VMKLKPGKHEEYKRRHDAVWPELLALLKEAGIRNYSIF--LDEEENLLFGYWEYEDFEADMAKMAETEVCQKWWKYMA   82 (105)
T ss_pred             EEEeCcchHHHHHHhhccccHHHHHHHHHcCCceeEEE--ecCCcccEEEEEEEcChHHHHHHHhCCHHHHHHHHHhh
Confidence            457899999999987655    344333333 554444  45667999999999976665544443333447777653

>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]

Probab=88.36  E-value=5.7  Score=26.51  Aligned_cols=64  Identities=8%  Similarity=-0.093  Sum_probs=44.9

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeee---CCcceEEEEEEcCCHHHHHHH
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQV---GRLYNVHHFWCYKDLASRKET  101 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~---G~~n~v~~lw~y~~~~~r~~~  101 (139)
                      |++.+-.+.+++|.-++|.+.|.+..+.-...-..+|.-....   -+.++++-+-.++|.++-.+=
T Consensus         2 ~~v~~~~~~v~~g~~~~fe~~f~~~~~~~~~~~Gf~~~~llr~~~~~~~~~~~vvt~WeS~eaf~~W   68 (105)
T COG2329           2 MAVVFNRLAVKEGAEEEFEERFANRAGLLEEMPGFIGFELLRPKTVEDPDEYVVVTRWESEEAFKAW   68 (105)
T ss_pred             eEEEEEEEecCCCcHHHHHHHHHHHHhhhhcCCCceEEEEeecCccCCCceEEEEEEECCHHHHHhH
Confidence            6888999999999999999999986544322224444443322   235788889999998765543

>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism

Probab=87.86  E-value=3.8  Score=27.44  Aligned_cols=68  Identities=19%  Similarity=0.316  Sum_probs=43.7

Q ss_pred             EEEecCCCHHHHHHHHH----HHhHhhhhcC-ceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCC---Chhhhh
Q psy7458          44 SYSLKPGTMIEWGNNWA----RAITHRRNND-EAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSP---GWDECV  115 (139)
Q Consensus        44 tY~lkpg~~~~~~~~~~----~~l~~~~~~~-~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~---~w~~~~  115 (139)
                      +..|+||+..+|.+.-.    +.+..-+..| .---.|..  |+.++++++..++|++   +..+++.++|   +|.+..
T Consensus         6 ~~~L~p~~~~eY~~~H~~vWPEv~~~l~~~Gi~~ysIf~~--g~~~~LF~~~E~~~~~---~~~~~l~~~p~~~~W~~~m   80 (106)
T PF05336_consen    6 TLKLKPGLIEEYKRRHAEVWPEVLAALREAGIRNYSIFRD--GDTGRLFMYMETDDFD---ADMAALAADPVVQRWWAYM   80 (106)
T ss_dssp             EEEB-TTGHHHHHHCCCT--HHHHHHHHHCTEEEEEEEEE--TTTTEEEEEEEECT-C---HHHHHGGGSHHHHHHHHHH
T ss_pred             EEEecHHHHHHHHHHHhccCHHHHHHHHHCCCeEEEEEEe--CCCCEEEEEEEecChh---hHHHHccCChHHHHHHHHH
Confidence            45678999999988543    3333322333 55555544  7778999999999933   4445667776   677765


Q ss_pred             h
Q psy7458         116 A  116 (139)
Q Consensus       116 ~  116 (139)
                      .
T Consensus        81 ~   81 (106)
T PF05336_consen   81 A   81 (106)
T ss_dssp             C
T ss_pred             H
Confidence            4

Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.

>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length

Probab=87.41  E-value=6.8  Score=26.35  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             EEecCCCHHHHHHHHHHHhHhhhhcC--ceeEEEEeee--CCc------------ce-EEEEEEcCCHHHHHHHHHHhcc
Q psy7458          45 YSLKPGTMIEWGNNWARAITHRRNND--EAFAGFFSQV--GRL------------YN-VHHFWCYKDLASRKETRESAWR  107 (139)
Q Consensus        45 Y~lkpg~~~~~~~~~~~~l~~~~~~~--~lvG~w~te~--G~~------------n~-v~~lw~y~~~~~r~~~r~~~~~  107 (139)
                      --+...+.++|.+.-+.+-+..+.||  +.+-+|-.++  |..            .+ |+--..|+|-++|++.+++.++
T Consensus         8 ~~VP~~nk~aY~~~A~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m~   87 (103)
T PF07237_consen    8 LPVPTANKDAYRAMAEKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMMA   87 (103)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHHC
T ss_pred             EECcHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhhc
Confidence            34556678889888777777666665  8888887754  321            23 4455689999999999999999


Q ss_pred             CCChhhh
Q psy7458         108 SPGWDEC  114 (139)
Q Consensus       108 ~~~w~~~  114 (139)
                      ||.++..
T Consensus        88 DPrm~~~   94 (103)
T PF07237_consen   88 DPRMQEM   94 (103)
T ss_dssp             SHHHHHT
T ss_pred             CcCcCCC
Confidence            9998873

The function of this family is unknown.; PDB: 2OKQ_A.

>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length

Probab=86.83  E-value=3.2  Score=25.05  Aligned_cols=57  Identities=11%  Similarity=0.076  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhHhhhhcCceeEE---EEeeeC-CcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          52 MIEWGNNWARAITHRRNNDEAFAG---FFSQVG-RLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        52 ~~~~~~~~~~~l~~~~~~~~lvG~---w~te~G-~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      +.+|.+.....+.  +..|++|..   ..+..| .....+.|.+|+|.++-.+-    ++||+.++.
T Consensus         4 ~~~Y~~~~~~~l~--~~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~aa~~~----~~speYq~~   64 (65)
T PF07045_consen    4 YQEYREAVPPILE--KYGGRVLARGGEPEVLEGDWDPDRVVIIEFPSMEAAKAW----YNSPEYQAL   64 (65)
T ss_dssp             HHHHHHHHHHHHH--HTT-EEEEECEEEEEEEST-SSSEEEEEEESSHHHHHHH----HCSHHHHHH
T ss_pred             HHHHHHHHHHHHH--HcCCEEEEECCceeEEecCCCCCeEEEEECCCHHHHHHH----HCCHhHHhh
Confidence            4455554444332  234576644   233457 46688899999999887655    577777653

The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.

>PRK13315 heme-degrading monooxygenase IsdG; Provisional

Probab=82.84  E-value=6.3  Score=26.61  Aligned_cols=60  Identities=5%  Similarity=0.029  Sum_probs=38.1

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHH--HhHhhhhcCceeEE--EEeeeCC-cceEEEEEEcCCHHHHHH
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWAR--AITHRRNNDEAFAG--FFSQVGR-LYNVHHFWCYKDLASRKE  100 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~--~l~~~~~~~~lvG~--w~te~G~-~n~v~~lw~y~~~~~r~~  100 (139)
                      |++-+..++++||.-++|.+.|.+  .+...   -..+++  +...-++ .+.++.+-.++|.++-++
T Consensus         1 M~Vv~Nr~~V~~g~~~~fe~rf~r~~~le~~---pGFv~~~lLr~~~~~~~~~~~v~T~Wes~eaF~a   65 (107)
T PRK13315          1 MIVVTNRITVKKGFAAKMAPRFTKGGPLEEL---EGFHKVEVWLIDNDDEYDEMYVNMWWETEEDFEA   65 (107)
T ss_pred             CEEEEEEEEeCCCcHHHHHHHHccCCcccCC---CCeEEEEEeccCCCCCCceEEEEEEECCHHHHHH
Confidence            688899999999999999999865  23211   133332  2222222 345656778888777644

>PRK13313 heme-degrading monooxygenase IsdI; Provisional

Probab=81.36  E-value=8.2  Score=26.15  Aligned_cols=61  Identities=10%  Similarity=-0.080  Sum_probs=39.5

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHH--HhHhhhhcCceeEE--EEeee-CCcceEEEEEEcCCHHHHHHH
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWAR--AITHRRNNDEAFAG--FFSQV-GRLYNVHHFWCYKDLASRKET  101 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~--~l~~~~~~~~lvG~--w~te~-G~~n~v~~lw~y~~~~~r~~~  101 (139)
                      |++.+...+++||.-+++.+.|.+  .|...+   ..+++  +.... .+.+.++.+-.++|.++-++=
T Consensus         1 M~v~~Nri~V~~G~~~~~~~rF~~r~~ie~~p---GF~~~~vLr~~~~~~~~~~~V~T~Wesee~F~~W   66 (108)
T PRK13313          1 MFMAENRLQLQKGSAEETIERFYNRQGIETIE---GFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNW   66 (108)
T ss_pred             CEEEEEEEEeCCCcHHHHHHHHcccCCcccCC---CeEEEEEecCCCCCCceEEEEEEEECCHHHHHHH
Confidence            688899999999999999999965  332221   22222  12221 234567778888877766543

>PRK13314 heme-degrading monooxygenase IsdG; Provisional

Probab=81.23  E-value=7.7  Score=26.20  Aligned_cols=61  Identities=7%  Similarity=-0.074  Sum_probs=39.9

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHH--HhHhhhhcCceeEEE--Eeee-CCcceEEEEEEcCCHHHHHHH
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWAR--AITHRRNNDEAFAGF--FSQV-GRLYNVHHFWCYKDLASRKET  101 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~--~l~~~~~~~~lvG~w--~te~-G~~n~v~~lw~y~~~~~r~~~  101 (139)
                      |++.+...++++|.-+++.+.|.+  .+...   -..+++-  .... .+.+.++.+-.++|.++-++=
T Consensus         1 M~vv~Nri~V~~G~~~~~~erF~r~~~ie~~---pGF~~~~vLr~~~~~~~~~y~v~T~Wes~eaF~aW   66 (107)
T PRK13314          1 MIIVTNTAKITKGNGHKLIDRFNKVGKVETM---PGFLGLEVLLTQNTVDYDEVTISTRWNAKEDFQGW   66 (107)
T ss_pred             CEEEEEEEEeCCCchHHHHHHhccCCccccC---CCcEEEEEecCCCCCCCceEEEEEEECCHHHHHHH
Confidence            688899999999999999999954  23222   1333322  1211 134677778888887776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
1vqy_A	116	Crystal Structure Of A Nipsnap Family Protein (Atu5		2e-05
2ap6_A	112	X-Ray Crystal Structure Of Protein Atu4242 From Agr		7e-04
1vqs_A	116	Crystal Structure Of A Nipsnap Family Protein With		8e-04

>pdb|1VQY|A Chain A, Crystal Structure Of A Nipsnap Family Protein (Atu5224) From Agrobacterium Tumefaciens Str. C58 At 2.40 A Resolution Length = 116

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 76  FFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSF 135
           F + +G L  V H W Y  L  R E R        W   +     LI   ++RILLPT F
Sbjct: 53  FVTDIGPLSQVIHXWGYASLDDRAERRGKLAEDQRWQAFIPRLSVLIESSENRILLPTDF 112
Query: 136 SPTQ 139
           SP +
Sbjct: 113 SPLR 116

>pdb|2AP6|A Chain A, X-Ray Crystal Structure Of Protein Atu4242 From Agrobacterium Tumefaciens. Northeast Strucutral Genomics Consortium Target Atr43. Length = 112

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 40  YEVRSYSLKPGTMIEWGNNWA-RAITHRRNNDEAFAG-FFSQVGRLYNVHHFWCYKDLAS 97
           YE+R+Y LK G +  +        I  ++++     G FFS++G +  + H W +  L  
Sbjct: 3   YEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDD 62
Query: 98  RKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
           R E R      P W   +     LI   +++I  P  FSP
Sbjct: 63  RAERRARLXADPRWLSFLPKIRDLIEVAENKIXKPARFSP 102

>pdb|1VQS|A Chain A, Crystal Structure Of A Nipsnap Family Protein With Unknown Function (Atu4242) From Agrobacterium Tumefaciens Str. C58 At 1.50 A Resolution Length = 116

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 40  YEVRSYSLKPGTMIEWGNNWA-RAITHRRNNDEAFAG-FFSQVGRLYNVHHFWCYKDLAS 97
           YE+R+Y LK G +  +        I  ++++     G FFS++G +  + H W +  L  
Sbjct: 15  YEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDD 74
Query: 98  RKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
           R E R      P W   +     LI   +++I  P  FSP
Sbjct: 75  RAERRARLXADPRWLSFLPKIRDLIEVAENKIXKPARFSP 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
1vqy_A	116	Hypothetical protein AGR_PAT_315; structural genom	3e-35
1vqs_A	116	Hypothetical protein AGR_L_1239; ferredoxin-like f	1e-34

>1vqy_A Hypothetical protein AGR_PAT_315; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.40A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 Length = 116

 Score =  116 bits (293), Expect = 3e-35
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 39  IYEVRSYSLKPGTMIEWGNNWARAITH--RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLA 96
           I E R Y ++ G M E+                      F + +G L  V H W Y  L 
Sbjct: 14  IVEERIYRIRGGKMQEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIHMWGYASLD 73

Query: 97  SRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ 139
            R E R        W   +     LI   ++RILLPT FSP +
Sbjct: 74  DRAERRGKLAEDQRWQAFIPRLSVLIESSENRILLPTDFSPLR 116

>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A Length = 116

 Score =  115 bits (290), Expect = 1e-34
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 33  RSGAPNIYEVRSYSLKPGTMIEWGNNWARAITH--RRNNDEAFAGFFSQVGRLYNVHHFW 90
                  YE+R+Y LK G +  +            + +  E    FFS++G +  + H W
Sbjct: 8   HHHHHMFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIW 67

Query: 91  CYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
            +  L  R E R      P W   +     LI   +++I+ P  FSP
Sbjct: 68  AFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSP 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
1vqy_A	116	Hypothetical protein AGR_PAT_315; structural genom	100.0
1vqs_A	116	Hypothetical protein AGR_L_1239; ferredoxin-like f	100.0
3kkf_A	105	Putative antibiotic biosynthesis monooxygenase; st	98.19
1x7v_A	99	PA3566 protein, APC5058; structural genomics, prot	97.82
1y0h_A	102	Hypothetical protein RV0793; ferredoxin-like fold,	97.8
3f44_A	220	Putative monooxygenase; YP_193413.1, structural ge	97.7
3e8o_A	119	Uncharacterized protein with erredoxin-like fold;	97.67
1tuv_A	114	Protein YGIN; menadione oxidase, monooxygenase, CO	97.63
2bbe_A	108	Hypothetical protein SO0527; MCSG, structural geno	97.6
1q8b_A	105	Protein YJCS; structural genomics, PSI, protein st	97.53
3mcs_A	219	Putative monooxygenase; structural genomics, joint	97.49
2pd1_A	104	Hypothetical protein; unknown function, NE2512 pro	97.49
2gff_A	106	LSRG protein; dimeric alpha+beta barrel ferredoxin	97.48
2omo_A	124	DUF176; structural genomics, APC6266, PSI-2, prote	97.47
2fb0_A	94	Conserved hypothetical protein; SAD, bacteroides t	97.43
3gz7_A	115	Putative antibiotic biosynthesis monooxygenase; NP	97.4
3bm7_A	115	Protein of unknown function with ferredoxin-like;	97.4
4dpo_A	119	Conserved protein; structural genomics, PSI-biolog	97.39
1iuj_A	106	Hypothetical protein TT1380; structural genomics,	97.24
4hl9_A	118	Antibiotic biosynthesis monooxygenase; nysgrc, PSI	97.19
4dn9_A	122	Antibiotic biosynthesis monooxygenase; structural	97.11
3kg0_A	128	Snoab; polyketide, anthracycline, oxygenase, cofac	96.91
3f44_A	220	Putative monooxygenase; YP_193413.1, structural ge	96.25
3mcs_A	219	Putative monooxygenase; structural genomics, joint	95.93
2ril_A	99	Antibiotic biosynthesis monooxygenase; YP_00109527	95.92
3hx9_A	124	Protein RV3592; DI-heme, beta barrel, dimer, oxido	95.65
1lq9_A	112	Actva-ORF6 monooxygenase; aromatic polyketides, ac	95.14
1tz0_A	114	Hypothetical protein; structural genomics, protein	95.07
3tvz_A	172	Putative uncharacterized protein YHGC; putative mo	94.76
1sqe_A	109	Hypothetical protein PG130; structural genomics, P	94.59
2zdo_A	109	Heme-degrading monooxygenase ISDG; ruffling, prote	94.53
3fgv_A	106	Uncharacterized protein with ferredoxin-like fold;	91.9
3fj2_A	186	Monooxygenase-like protein; structural genomics, j	87.9
1tuw_A	109	Tetracenomycin polyketide synthesis protein TCMI;	85.18
2fiu_A	99	Conserved hypothetical protein; alpha-beta, dimeri	83.52
2okq_A	141	Hypothetical protein YBAA; YBAA protein, structura	82.45
1x8d_A	104	Hypothetical protein YIIL; mutarotase, L-rhamnose,	81.87

>1vqy_A Hypothetical protein AGR_PAT_315; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.40A {Agrobacterium tumefaciens str} SCOP: d.58.4.13

Probab=100.00  E-value=1.1e-34  Score=198.92  Aligned_cols=104  Identities=30%  Similarity=0.470  Sum_probs=99.0

Q ss_pred             CCceEEEEEEEecCCCHHHHHHHHHH-HhHhhhhc-CceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          36 APNIYEVRSYSLKPGTMIEWGNNWAR-AITHRRNN-DEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        36 ~~~iyElRtY~lkpg~~~~~~~~~~~-~l~~~~~~-~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      .-||||+|+|+++||++++|++.|++ +++.+.++ +++||+|++++|++|+|+|||+|+|+++|++.|+++++||+|++
T Consensus        11 ~~~~yElRtY~i~Pg~~~~f~~~~~~~~i~~~~k~g~~~vG~~~~~~G~ln~v~~Lw~y~sl~~r~~~r~a~~~dp~W~~   90 (116)
T 1vqy_A           11 HHMIVEERIYRIRGGKMQEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIHMWGYASLDDRAERRGKLAEDQRWQA   90 (116)
T ss_dssp             -CCEEEEEEEEECTTCHHHHHHHHHHTHHHHHHHHHCCEEEEEEEEESBSSEEEEEEEESCHHHHHHHHHHHHTCHHHHH
T ss_pred             ceeEEEEEEEEEcCCCHHHHHHHHHHhhhHHHHHhCCceEEEEEcccCCCcEEEEEEecCCHHHHHHHHHHHhcCCchHH
Confidence            36999999999999999999999999 99998766 79999999999999999999999999999999999999999999


Q ss_pred             hhhcccccceeeeeeeeeecCCCCCC
Q psy7458         114 CVAYTVPLIREMQSRILLPTSFSPTQ  139 (139)
Q Consensus       114 ~~~~~~~~i~~~~s~ll~p~~fsp~~  139 (139)
                      ++....++|.+++|++|.|++|||++
T Consensus        91 ~~~~~~~lI~~~es~il~P~~fSpl~  116 (116)
T 1vqy_A           91 FIPRLSVLIESSENRILLPTDFSPLR  116 (116)
T ss_dssp             HHHHHHTTEEEEEEEEEEECTTCSCC
T ss_pred             HHHHhhcceeeEEEEEEEECCCCCCC
Confidence            88888899999999999999999986

>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A

Probab=100.00  E-value=1.1e-33  Score=194.04  Aligned_cols=103  Identities=27%  Similarity=0.536  Sum_probs=98.7

Q ss_pred             CCceEEEEEEEecCCCHHHHHHHHHH-HhHhhhhc-CceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          36 APNIYEVRSYSLKPGTMIEWGNNWAR-AITHRRNN-DEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        36 ~~~iyElRtY~lkpg~~~~~~~~~~~-~l~~~~~~-~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      .-|+||+|+|+++||++++|++.|++ +++.+.++ +++||+|++++|++|+|+|||+|+|+++|++.|+++++||+|++
T Consensus        11 ~~~~yElR~Y~i~Pg~~~~~~~~~~~~~i~~~~~~g~~~vG~~~~~~G~ln~v~~Lw~y~sl~~r~~~r~a~~~dp~W~~   90 (116)
T 1vqs_A           11 HHMFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLS   90 (116)
T ss_dssp             SCCEEEEEEEEESTTCHHHHHHHHHHTHHHHHHHHHCCEEEEEEEEESSSSEEEEEEEESCHHHHHHHHHHHHHCHHHHH
T ss_pred             ceeEEEEEEEEEcCCCHHHHHHHHHHhhhHHHHHhCCceEEEEEcccCCCcEEEEEEecCCHHHHHHHHHHHhcCCchHH
Confidence            46999999999999999999999999 99998766 79999999999999999999999999999999999999999999


Q ss_pred             hhhcccccceeeeeeeeeecCCCCC
Q psy7458         114 CVAYTVPLIREMQSRILLPTSFSPT  138 (139)
Q Consensus       114 ~~~~~~~~i~~~~s~ll~p~~fsp~  138 (139)
                      +....+++|.+++|++|.|++|||+
T Consensus        91 ~~~~~~~lI~~~es~il~P~~fSpl  115 (116)
T 1vqs_A           91 FLPKIRDLIEVAENKIMKPARFSPL  115 (116)
T ss_dssp             HTHHHHTTEEEEEEEEEEECTTCSC
T ss_pred             HHHHhhhheeeeEEEEEEECCCCcC
Confidence            8888889999999999999999997

>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=2.8e-05  Score=50.91  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=77.5

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhH-h-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAIT-H-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~-~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      .||+.+-+.+++||+.++|.+.+.+.+. . +..-|-+--.+....++.++++.+=.|+|.++.++.    .+.|.++++
T Consensus         4 ~mi~via~~~vkpg~~~~f~~~l~~~~~~s~r~EpGcl~y~~~~~~~~p~~~~~~E~w~d~~a~~~H----~~s~~~~~~   79 (105)
T 3kkf_A            4 NNMVRLSRIIIDPERLEEYNAYLKEEIEVSMRLEPGVLVLYAVAEKERPNHVTILEIYADEAAYKSH----IATPHFKKY   79 (105)
T ss_dssp             GCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHH----HTSHHHHHH
T ss_pred             CCEEEEEEEEECcCcHHHHHHHHHHHHHHHHhCCCCcEEEEEEEeCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHH
Confidence            6899999999999999999999998764 3 434444433344455567899999999999987665    589999999


Q ss_pred             hhcccccceeeeeeeeeec-CCCCC
Q psy7458         115 VAYTVPLIREMQSRILLPT-SFSPT  138 (139)
Q Consensus       115 ~~~~~~~i~~~~s~ll~p~-~fsp~  138 (139)
                      .....+++.+.+-..|.|. +.+++
T Consensus        80 ~~~~~~~l~~~~~~~l~pi~~~~~~  104 (105)
T 3kkf_A           80 KEGTLDMVQMLELIDATPLIPGLKM  104 (105)
T ss_dssp             HHHHGGGEEEEEEEEECCSSTTCCC
T ss_pred             HHHHHHHhhCcceEEEeecCccccc
Confidence            8889999999998888885 44544

>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11

Probab=97.82  E-value=0.0007  Score=43.13  Aligned_cols=92  Identities=8%  Similarity=0.010  Sum_probs=67.4

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEE-eeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFF-SQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~-te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      .||.-+-+++++||+.++|.+.+.+.+..-...-..+++-. ...++.++++.+=.|+|.++.++.    .++|.++++.
T Consensus         5 ~mi~v~~~~~vkpg~~~~~~~~~~~~~~~~~~epG~l~~~~~~~~~~p~~~~~~e~w~~~~a~~~h----~~s~~~~~~~   80 (99)
T 1x7v_A            5 TPLTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYMIEQWRDDAALERH----QNTEHFLRFS   80 (99)
T ss_dssp             SCEEEEEEEEECTTCHHHHHHHHHHHHHHHHHSTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHH----HTSHHHHHHH
T ss_pred             CcEEEEEEEEECCCCHHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHHH
Confidence            47999999999999999999999986544223333444443 344557899999999999887765    4788888888


Q ss_pred             hcccccceeeeeeeeee
Q psy7458         116 AYTVPLIREMQSRILLP  132 (139)
Q Consensus       116 ~~~~~~i~~~~s~ll~p  132 (139)
                      ....+++...+-..+.+
T Consensus        81 ~~~~~~~~~~~v~~~~~   97 (99)
T 1x7v_A           81 RGNEALLQNVKIDQLYR   97 (99)
T ss_dssp             TTCGGGEEEEEEEEEEC
T ss_pred             HHHHHhcCCceEEEEEe
Confidence            77777755555555544

>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11

Probab=97.80  E-value=0.00039  Score=44.63  Aligned_cols=94  Identities=14%  Similarity=0.120  Sum_probs=69.3

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHh-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITH-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      .||.-+-+++++||+.++|.+.+.+.+.. +..-|-+-..+... ++.++++.+=.|+|.++.++.    .++|.++++.
T Consensus         4 ~mi~v~~~~~vkpg~~~~~~~~~~~~~~~~~~epG~l~~~~~~~-~~~~~~~~~e~w~~~~a~~~h----~~s~~~~~~~   78 (102)
T 1y0h_A            4 SPVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYES-ADGGELVLFERYRSRIALDEH----RGSPHYLNYR   78 (102)
T ss_dssp             SCEEEEEEECBCGGGHHHHHHHHHHHHHHHHHSTTEEEEEEEEE-TTSSCEEEEEEESSHHHHHHH----HTSHHHHHHH
T ss_pred             ceEEEEEEEEECCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEe-CCCCEEEEEEEECCHHHHHHH----hcChHHHHHH
Confidence            47999999999999999999999986544 33334333333334 667899999999999987765    4788888888


Q ss_pred             hccccccee-eeeeeeeecCC
Q psy7458         116 AYTVPLIRE-MQSRILLPTSF  135 (139)
Q Consensus       116 ~~~~~~i~~-~~s~ll~p~~f  135 (139)
                      ....+++.+ .+-..+.+..-
T Consensus        79 ~~~~~~l~~~~~i~~~~~~~~   99 (102)
T 1y0h_A           79 AQVGELLTRPVAVTVLAPLDE   99 (102)
T ss_dssp             TTSGGGBSSCCEEEEEEEEEC
T ss_pred             HHHHHHhcCCcEEEEEEEcCC
Confidence            777777765 45555655443

>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}

Probab=97.70  E-value=0.00037  Score=51.64  Aligned_cols=128  Identities=6%  Similarity=0.011  Sum_probs=86.2

Q ss_pred             hHHhHHHhcCcccccccceecc-c--CCCCcccCCCCCCceEEEEEEEecCCCHHHHHHHHH-HHhHh-hhhcCceeEEE
Q psy7458           2 FQVLHKEQGQTVRSRHLQYLLA-F--SYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWA-RAITH-RRNNDEAFAGF   76 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~iyElRtY~lkpg~~~~~~~~~~-~~l~~-~~~~~~lvG~w   76 (139)
                      ++.|......++.......+.+ +  .--++......+.||+.+-+.+++||+.++|.+.+. ..... +..-|-+.-.+
T Consensus        77 ~~~~~~~~~~~l~~~~~~~l~p~~l~~k~~~~~~~~~~~mI~~ia~~~vkpg~~~~f~~~l~~~~~~~~r~EpGcl~y~~  156 (220)
T 3f44_A           77 ADDFVETVNKIATKQKVIDLHPEVITTKAQRALNSYADNFVMRLIKVEVKDADAEKFSHAVKKEMTTSMASEPGMEIMMS  156 (220)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEEEECCC-------CCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             HHHHHHHHHHHhhCCceeeeeeEEeecchhhhhhcCCCceEEEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            4567777777777654322221 1  111233344446899999999999999999999995 55544 43334443333


Q ss_pred             EeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhcccccceeeeeeeeeec
Q psy7458          77 FSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPT  133 (139)
Q Consensus        77 ~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~~~~i~~~~s~ll~p~  133 (139)
                      ....++.|+++.+=.|+|.++.++.    .+.|.++++.....+++.+.+...|.|-
T Consensus       157 ~~d~~~p~~f~~~E~w~d~~Al~aH----~~s~hf~~~~~~~~~ll~~~~v~~l~p~  209 (220)
T 3f44_A          157 GTNIDNPNEWYFIEVYANDEAYDIH----VKTPHYKEYIEETDGMVKSRDVKTLVRD  209 (220)
T ss_dssp             EEETTEEEEEEEEEEESSHHHHHHH----TTSHHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred             EEcCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHHHHHHHHHhcCCceEEeech
Confidence            3445557889888899999887665    6899999998888999998888877763

>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}

Probab=97.67  E-value=0.00039  Score=46.48  Aligned_cols=95  Identities=6%  Similarity=0.005  Sum_probs=69.6

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHh-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITH-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      .||.-+-+++++||+.++|.+.+.+.+.. +..-|-+--.+....++.++++-+=.|+|.++.++.    .+.|.++++.
T Consensus        18 ~mi~via~~~vkpg~~~~~~~~l~~~~~~~r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH----~~s~~~~~~~   93 (119)
T 3e8o_A           18 TMVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTH----LALPGVTQAI   93 (119)
T ss_dssp             CCEEEEEEEECCTTTHHHHHHHHHHHHHHHTTSTTEEEEEEEEETTSTTEEEEEEEESSHHHHHHH----HTCHHHHHHH
T ss_pred             ceEEEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHH----HcCHHHHHHH
Confidence            79999999999999999999999986654 433343333333344567899999999999988765    4889888888


Q ss_pred             hccccc-ceeeeeeeeeecCC
Q psy7458         116 AYTVPL-IREMQSRILLPTSF  135 (139)
Q Consensus       116 ~~~~~~-i~~~~s~ll~p~~f  135 (139)
                      ....++ ....+-.++.+...
T Consensus        94 ~~~~~ll~~~~~i~~~~~~~~  114 (119)
T 3e8o_A           94 DALKHLNVTDLKITAYEAGEA  114 (119)
T ss_dssp             HHHHHTTCCCCEEEEEEBCSC
T ss_pred             HHHHHHhcCCCEEEEEecccc
Confidence            777676 34555555555443

>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A

Probab=97.63  E-value=0.00094  Score=44.26  Aligned_cols=93  Identities=12%  Similarity=0.079  Sum_probs=69.2

Q ss_pred             ceEEEEEEEecCC--CHHHHHHHHHHHhHhhhhcCceeEEEEe-e--------eCCcceEEEEEEcCCHHHHHHHHHHhc
Q psy7458          38 NIYEVRSYSLKPG--TMIEWGNNWARAITHRRNNDEAFAGFFS-Q--------VGRLYNVHHFWCYKDLASRKETRESAW  106 (139)
Q Consensus        38 ~iyElRtY~lkpg--~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e--------~G~~n~v~~lw~y~~~~~r~~~r~~~~  106 (139)
                      ||.-+-+.+++||  +.++|.+.+.+.+..-...-..+++-.. .        .++.|+++-+=.|+|.++.++.    .
T Consensus         1 Mi~via~~~vkpg~~~~~~f~~~l~~~~~~~r~EpGcl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH----~   76 (114)
T 1tuv_A            1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAH----L   76 (114)
T ss_dssp             CEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHH----H
T ss_pred             CEEEEEEEEECCCcchHHHHHHHHHHHHHHHccCCCcEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHH----h
Confidence            6788889999999  9999999999866542233344445443 3        3567899999999999887765    4


Q ss_pred             cCCChhhhhhcccccceeeeeeeeeecC
Q psy7458         107 RSPGWDECVAYTVPLIREMQSRILLPTS  134 (139)
Q Consensus       107 ~~~~w~~~~~~~~~~i~~~~s~ll~p~~  134 (139)
                      +.|.++++.+...+++...+-.++.+.+
T Consensus        77 ~s~h~~~~~~~~~~l~~~~~i~~~~~~~  104 (114)
T 1tuv_A           77 QTPHMKAYSEAVKGDVLEMNIRILQPGI  104 (114)
T ss_dssp             TSHHHHHHHHHHTTTEEEEEEEEECCC-
T ss_pred             cCHHHHHHHHHHHHhccCCEEEEEEEcc
Confidence            7888888888788888877666666554

>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}

Probab=97.60  E-value=0.00059  Score=44.55  Aligned_cols=92  Identities=14%  Similarity=0.034  Sum_probs=67.5

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEE-EeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhh-h
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF-FSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDE-C  114 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w-~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~-~  114 (139)
                      .||.-+-+++++||+.++|.+.+.+.+..-...-..+++- ....++.++++.+=.|+|.++.++.    .++|.+++ +
T Consensus        12 ~mi~v~~~~~vkpg~~~~f~~~~~~~~~~~~~epGcl~~~~~~~~~~p~~~~~~E~w~~~~a~~~H----~~s~~~~~~~   87 (108)
T 2bbe_A           12 QQIVCVASFLSKEGKTEALIAALASLIPDTRREAGCIRYELNVSRDEPRRVTFVEKFVDIAAFDEH----CAKDAIQHYF   87 (108)
T ss_dssp             SSEEEEEEEEECTTCHHHHHHHHHTTHHHHHTSTTEEEEEEEECSSSTTEEEEEEEESSHHHHHHH----HTSHHHHHHH
T ss_pred             cEEEEEEEEEECCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCEEEEEEEECCHHHHHHH----hcChHHHHHH
Confidence            3699999999999999999999988554322333444443 3344567899999999999987765    47888888 8


Q ss_pred             hhcccccceeeeeeeeee
Q psy7458         115 VAYTVPLIREMQSRILLP  132 (139)
Q Consensus       115 ~~~~~~~i~~~~s~ll~p  132 (139)
                      .....+++.+.+-..+.+
T Consensus        88 ~~~~~~~l~~~~v~~~~~  105 (108)
T 2bbe_A           88 HQVMPELVESFHVETYHQ  105 (108)
T ss_dssp             HHTHHHHEEEEEEEEECC
T ss_pred             HHHHHHhccccEEEEEEE
Confidence            877777877755554444

>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6

Probab=97.53  E-value=0.0012  Score=42.91  Aligned_cols=88  Identities=3%  Similarity=-0.047  Sum_probs=68.0

Q ss_pred             CceEEEEEEEecCCC-HHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          37 PNIYEVRSYSLKPGT-MIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        37 ~~iyElRtY~lkpg~-~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      .||.-+-+++++||+ .++|.+.+.+.+..-...-..+++-.. ..++.++++.+=.|+|.++.++.    .+.|.++++
T Consensus        12 ~mi~vi~~~~vkpg~d~~~f~~~l~~~~~~~r~epGcl~~~~~~~~~~p~~~~~~E~w~d~~a~~~H----~~s~~~~~~   87 (105)
T 1q8b_A           12 SMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIH----FTKKHTIDV   87 (105)
T ss_dssp             CEEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTTEEEEEEEECCGGGCEEEEEEEESSHHHHHHH----TTSHHHHHH
T ss_pred             eEEEEEEEEEECCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHH
Confidence            479999999999999 999999999866542233344455444 44567899999999999987766    578999999


Q ss_pred             hhcccccceeeeee
Q psy7458         115 VAYTVPLIREMQSR  128 (139)
Q Consensus       115 ~~~~~~~i~~~~s~  128 (139)
                      .....+++.+.+..
T Consensus        88 ~~~~~~~l~~~e~~  101 (105)
T 1q8b_A           88 QKQELTEVEWLMKS  101 (105)
T ss_dssp             HTTTCEEEEEEEEE
T ss_pred             HHHHHHHhhChhhh
Confidence            88888888877654

>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}

Probab=97.49  E-value=0.00088  Score=49.73  Aligned_cols=125  Identities=10%  Similarity=0.022  Sum_probs=91.7

Q ss_pred             hHHhHHHhcCccccccc--ceecccCCCCcccCCCCCCceEEEEEEEecCCCHHHHHHHHHHHh-HhhhhcCceeEEEEe
Q psy7458           2 FQVLHKEQGQTVRSRHL--QYLLAFSYWPAIETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAI-THRRNNDEAFAGFFS   78 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iyElRtY~lkpg~~~~~~~~~~~~l-~~~~~~~~lvG~w~t   78 (139)
                      ++.|......++.++..  ++-..+. -.+..... +.++.-+-+.++|||+.++|.+...+.+ +.|..-|-+.-.+..
T Consensus        77 f~~f~~~~~~~l~~~~~~~~~~~~~~-~~k~~~~~-~~~~~via~~~vkp~~~e~~~~~~~~~~~~sr~E~Gcl~y~~~~  154 (219)
T 3mcs_A           77 SKDFKAVIPQIAEGNLNSAEIDVQIA-KDKKIEQN-DNTFAVYTVIDVKPENDKEFAEIIKNIVETTFNEEGTLLVYLGT  154 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEEE-EECCCCCC-TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCcccceeeEEec-ccccccCC-CCcEEEEEEEEECcCcHHHHHHHHHHHHHHHcCCCCeEEEEEEe
Confidence            56788888888887654  2222221 11111222 3577789999999999999999998855 456444555555566


Q ss_pred             eeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhcccccceeeeeeeeee
Q psy7458          79 QVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYTVPLIREMQSRILLP  132 (139)
Q Consensus        79 e~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~~~~i~~~~s~ll~p  132 (139)
                      ..++.|+++-+=.|.|.++.++.    .+.|-++++.....+++.+.....|.|
T Consensus       155 ~~~~p~~f~~~E~w~d~~A~~aH----~~s~Hf~~~~~~~~~~l~~~~~~~l~~  204 (219)
T 3mcs_A          155 DRRNFNKWCLFEVYKDIDSYLNH----RSAKYFKDYITQTKDMIAGKKRAELQV  204 (219)
T ss_dssp             ETTEEEEEEEEEEESSHHHHHHH----HTSHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHHHHHHHHHHhCCceeeccc
Confidence            66668899999999999998877    489999999988889999888887776

>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11

Probab=97.49  E-value=0.0016  Score=41.96  Aligned_cols=82  Identities=16%  Similarity=0.102  Sum_probs=61.0

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhc
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAY  117 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~  117 (139)
                      ||.-+-+++++||+.++|.+.+.+.+..-...-..+++-.... +.++++.+=.|+|.++.++.    .+.|.++++...
T Consensus         5 ~i~v~~~~~vkpg~~~~~~~~l~~~~~~~~~epG~l~~~~~~~-~p~~~~~~E~w~~~~a~~~H----~~s~~~~~~~~~   79 (104)
T 2pd1_A            5 KLALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALKF-GPSTFGVFDAFADEAGRQAH----LNGQIAAALMAN   79 (104)
T ss_dssp             CEEEEEEEEBCTTCHHHHHHHHHHTHHHHHTCTTEEEEEEEEC-SSSEEEEEEEESSHHHHHHH----HTSHHHHHHHHH
T ss_pred             EEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCCCCcEEEEEEec-CCCEEEEEEEECCHHHHHHH----hCCHHHHHHHHH
Confidence            6888999999999999999999986543223334445544444 66899999999999987765    478888887766


Q ss_pred             cccccee
Q psy7458         118 TVPLIRE  124 (139)
Q Consensus       118 ~~~~i~~  124 (139)
                      ..+++.+
T Consensus        80 ~~~ll~~   86 (104)
T 2pd1_A           80 AATLLSS   86 (104)
T ss_dssp             HHHHBSS
T ss_pred             HHHHhcC
Confidence            6666554

>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A

Probab=97.48  E-value=0.0014  Score=42.44  Aligned_cols=91  Identities=10%  Similarity=0.067  Sum_probs=65.9

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEE-EeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF-FSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w-~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      ||.-+-+++++||+.++|.+.+.+.+..-...-..+++- ....++.|+++.+=.|+|.++.++.    .+.|.++++.+
T Consensus         1 Mi~vi~~~~vkpg~~~~~~~~~~~~~~~~r~epG~l~~~~~~~~~~p~~~~~~E~w~d~~a~~~h----~~s~~~~~~~~   76 (106)
T 2gff_A            1 MHVTLVEINVKEDKVDQFIEVFRANHLGSIREAGNLRFDVLRDEHIPTRFYIYEAYTDEAAVAIH----KTTPHYLQCVE   76 (106)
T ss_dssp             CEEEEEEEEBCGGGHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHH----TTSHHHHHHHH
T ss_pred             CEEEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHHHH
Confidence            678888999999999999999998664323333344444 3344567899999999999887654    68888888887


Q ss_pred             ccccccee-eeeeeeee
Q psy7458         117 YTVPLIRE-MQSRILLP  132 (139)
Q Consensus       117 ~~~~~i~~-~~s~ll~p  132 (139)
                      ...+++.+ .+-.++.+
T Consensus        77 ~~~~~l~~~~~i~~~~~   93 (106)
T 2gff_A           77 QLAPLMTGPRKKTVFIG   93 (106)
T ss_dssp             HHGGGBSSCCEEEEEEE
T ss_pred             HHHHHhcCCcEEEEEee
Confidence            77777654 44455544

>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11

Probab=97.47  E-value=0.0019  Score=43.43  Aligned_cols=93  Identities=6%  Similarity=-0.091  Sum_probs=67.7

Q ss_pred             CCCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          35 GAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        35 ~~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      ...||.-+-+++++||+.++|.+.+.+.+..-...-..+++-.. ...+.++++.+=.|+|.++.++.    .+.|.+++
T Consensus        20 ~~~mi~vi~~~~vkpg~~~~f~~~l~~~~~~sr~EpGcl~y~l~~~~~dp~~f~~~E~W~d~eal~aH----~~s~~~~~   95 (124)
T 2omo_A           20 QGHMYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAH----KETAHYLT   95 (124)
T ss_dssp             CCSSEEEEEEEEBCGGGHHHHHHHHHHHHHHHTTSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHH----TTSHHHHH
T ss_pred             CCceEEEEEEEEECcCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHH----hCCHHHHH
Confidence            33689999999999999999999999866442233344444433 44567899999999999887654    68888888


Q ss_pred             hhhccccccee-eeeeeee
Q psy7458         114 CVAYTVPLIRE-MQSRILL  131 (139)
Q Consensus       114 ~~~~~~~~i~~-~~s~ll~  131 (139)
                      +.....+++.. .+-.++.
T Consensus        96 ~~~~~~~ll~~~~~v~~~~  114 (124)
T 2omo_A           96 WRDTVADWMAEPRKGVIYG  114 (124)
T ss_dssp             HHHHHGGGBSSCCEEEEEE
T ss_pred             HHHHHHHHhcCCcEEEEEE
Confidence            88777777665 3334443

>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.0013  Score=41.54  Aligned_cols=84  Identities=7%  Similarity=-0.106  Sum_probs=62.4

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEE-EeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF-FSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w-~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      .||.-+-+++++||+.++|.+.+.+.+..-...-..+++- ....++.++++.+=.|+|.++.++.    .++|.++++.
T Consensus         3 ~mi~v~~~~~vkpg~~~~~~~~~~~~~~~~~~epG~l~~~~~~~~~~p~~~~~~e~w~~~~a~~~h----~~s~~~~~~~   78 (94)
T 2fb0_A            3 SMIRLNVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDTFESSTRRDVFMICETWQNAEVLAAH----EKTAHFAQYV   78 (94)
T ss_dssp             CCEEEEEEEECCTTTHHHHHHHHHHHHHHHTTSTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHH----TTSHHHHHHH
T ss_pred             cEEEEEEEEEECcccHHHHHHHHHHHHHHHhcCCCceEEEEEEcCCCCCEEEEEEEECCHHHHHHH----hCCHHHHHHH
Confidence            5799999999999999999999998664322333444444 3344567899999999999887754    6788888887


Q ss_pred             hccccccee
Q psy7458         116 AYTVPLIRE  124 (139)
Q Consensus       116 ~~~~~~i~~  124 (139)
                      ....+++.+
T Consensus        79 ~~~~~~l~~   87 (94)
T 2fb0_A           79 GIIQELAEM   87 (94)
T ss_dssp             HHHHHHSEE
T ss_pred             HHHHHHhcC
Confidence            766666654

>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}

Probab=97.40  E-value=0.00094  Score=44.59  Aligned_cols=85  Identities=12%  Similarity=0.043  Sum_probs=63.7

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEE-EeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF-FSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w-~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      +||+.+-+.+++||+.++|.+.+.+.+..-...-..+++- .....+.++++-+=.|+|.++.++.   +.++|.++++.
T Consensus        19 ~~i~via~~~vkpg~~~~f~~~~~~~~~~~r~epGcl~y~l~r~~~~p~~f~~~E~W~s~eal~~h---f~~S~hf~~~~   95 (115)
T 3gz7_A           19 GMIQEIASILVQPGREADFEAGVAQARPLFMRARGCHGVALHRSIEAPQRYTLVVDWETVDNHMVD---FRQSADFQEWR   95 (115)
T ss_dssp             SCEEEEEEEEBCTTCHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSSTTEEEEEEEESSHHHHHTT---TTTSHHHHHHH
T ss_pred             eEEEEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCCCEEEEEEEECCHHHHHHH---HhcCHHHHHHH
Confidence            7999999999999999999999999665433333444444 3345567899999999998877644   35788888887


Q ss_pred             hccccccee
Q psy7458         116 AYTVPLIRE  124 (139)
Q Consensus       116 ~~~~~~i~~  124 (139)
                      +...+++..
T Consensus        96 ~~~~~ll~~  104 (115)
T 3gz7_A           96 KLVGECFAE  104 (115)
T ss_dssp             HHHGGGBSS
T ss_pred             HHHHHHhcC
Confidence            777776654

>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}

Probab=97.40  E-value=0.0025  Score=42.17  Aligned_cols=91  Identities=10%  Similarity=-0.028  Sum_probs=67.0

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHh-Hh-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAI-TH-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l-~~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      .||.-+-+.+++||+.++|.+.+.+.+ .. +..-|-+-..+....++.++++.+=.|+|.++.++.    .+.|.++++
T Consensus        19 ~~i~vi~~~~vkpg~~~~f~~~l~~~~~~~~r~EpGcl~y~l~~~~~~p~~f~~~E~W~d~ea~~aH----~~s~~~~~~   94 (115)
T 3bm7_A           19 GMIGVVATLKVQPAKAAEFEKVFLDLAAKVKANEPGCLVYQLTRSKTEEGVYKVLELYASMDALKHH----GGTDYFKAA   94 (115)
T ss_dssp             SCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCTTEEEEEEEECSSSTTEEEEEEEESSHHHHHHH----HHCHHHHHH
T ss_pred             ccEEEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHH----hCCHHHHHH
Confidence            679999999999999999999999977 43 433344433333344556899999999999987765    478888888


Q ss_pred             hhcccccceee-eeeeee
Q psy7458         115 VAYTVPLIREM-QSRILL  131 (139)
Q Consensus       115 ~~~~~~~i~~~-~s~ll~  131 (139)
                      .+...+++.+. +-..+.
T Consensus        95 ~~~~~~ll~~~~~i~~~~  112 (115)
T 3bm7_A           95 GAAMGPTMAGAPVIEYLD  112 (115)
T ss_dssp             HHHHGGGEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCcEEEEEE
Confidence            87777777653 333333

>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}

Probab=97.39  E-value=0.0017  Score=43.39  Aligned_cols=91  Identities=16%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      .||.-+-+++++||+.++|.+.+.+.+..-...-..+++-.. ...+.++++.+=.|+|.++.++.    .+.|.++++.
T Consensus        24 ~MI~via~~~vkpg~~~~f~~~l~~~~~~~r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH----~~s~~f~~~~   99 (119)
T 4dpo_A           24 LAIRVVAKNQVKPEKVQEFMNLCKSLIEETLKEEGCIDYGVYQELENPEILTMLEEWKDEGSLDQH----IRSDHFKEIF   99 (119)
T ss_dssp             HCEEEEEEEEBCTTTHHHHHHHHHHHHHHHHTSTTEEEEEEEEETTEEEEEEEEEEESSHHHHHHH----HTSHHHHHHH
T ss_pred             ceEEEEEEEEECCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHH----HcCHHHHHHH
Confidence            589999999999999999999999866542333344444433 44557899999999999987665    5889988888


Q ss_pred             hcccccce-eeeeeeee
Q psy7458         116 AYTVPLIR-EMQSRILL  131 (139)
Q Consensus       116 ~~~~~~i~-~~~s~ll~  131 (139)
                      +...+++. ..+-+++.
T Consensus       100 ~~~~~ll~~~~~i~~~~  116 (119)
T 4dpo_A          100 PLLSECLDKETEINIYR  116 (119)
T ss_dssp             HHHHHTBSSCCEEEEEE
T ss_pred             HHHHHHhcCCCEEEEEe
Confidence            77777766 34444443

>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5

Probab=97.24  E-value=0.0037  Score=40.06  Aligned_cols=78  Identities=6%  Similarity=-0.012  Sum_probs=58.2

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEE-eeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFF-SQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~-te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      ||..+-+++++||+.++|.+.+.+....-...-..+|+-. ...++.++++.+-.|+|.++.++.    .++|.++++..
T Consensus         1 Mi~vi~~~~v~~g~~~~f~~~~~~~~~~~~~~pG~l~~~l~~~~~~~~~~~~~~~W~s~~a~~a~----~~s~~~~~~~~   76 (106)
T 1iuj_A            1 MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAW----TESPAFKEGHA   76 (106)
T ss_dssp             CEEEEEEECBCGGGHHHHHHHHHHHGGGGTTSTTEEEEEEEEESSTTSCEEEEEEESCHHHHHHH----HTSHHHHHHTT
T ss_pred             CEEEEEEEEeCcchHHHHHHHHHHHHHHhccCCCceEEEEEecCCCCCeEEEEEEECCHHHHHHH----hcCHHHHHHHh
Confidence            6888999999999999999999986654333334444443 344456899999999999998754    57888887765


Q ss_pred             ccc
Q psy7458         117 YTV  119 (139)
Q Consensus       117 ~~~  119 (139)
                      ...
T Consensus        77 ~~~   79 (106)
T 1iuj_A           77 RSG   79 (106)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            554

>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}

Probab=97.19  E-value=0.0032  Score=42.20  Aligned_cols=94  Identities=9%  Similarity=-0.039  Sum_probs=67.4

Q ss_pred             CCceEEEEEEEecCCCHHHHHHHHHHHhH-hhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          36 APNIYEVRSYSLKPGTMIEWGNNWARAIT-HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        36 ~~~iyElRtY~lkpg~~~~~~~~~~~~l~-~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      ..||.-+=+.++|||+.++|.+.+++.+. .|..-|-+--.+.....+.|+++-+=.|+|.++.++..    +.|.++++
T Consensus        21 ~sMi~viA~~~vkP~~~d~~~~~~~~l~~~tr~EpGcl~y~l~~d~~dp~~f~~~E~w~d~~al~~H~----~s~h~~~~   96 (118)
T 4hl9_A           21 QSMLKVIAQDFIKPEAIDIVLPLYRELVEKTRQEPLCLAYDLFVDQKDPGHFVFIEEWPDRAALDIHC----ATEHFTRL   96 (118)
T ss_dssp             --CEEEEEEEEECGGGHHHHHHHHHHHHHHHHTSTTCCEEEEEEETTEEEEEEEEEEESSHHHHHHHH----HSHHHHHH
T ss_pred             heeeEEEEEEEECchhHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEeCCHHHHHHHH----CCHHHHHH
Confidence            37999999999999999999999999665 35444444333444455578888888999988887764    67888888


Q ss_pred             hhcccccce-eeeeeeeeec
Q psy7458         115 VAYTVPLIR-EMQSRILLPT  133 (139)
Q Consensus       115 ~~~~~~~i~-~~~s~ll~p~  133 (139)
                      .+...+++. ..+-.++.+.
T Consensus        97 ~~~l~~~l~~~~~i~~l~~V  116 (118)
T 4hl9_A           97 VPLINAHQRQDGTVVLMDAV  116 (118)
T ss_dssp             HHHHHTTEEEEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCEEEEEeec
Confidence            877777655 3444555444

>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}

Probab=97.11  E-value=0.0046  Score=41.52  Aligned_cols=90  Identities=10%  Similarity=0.013  Sum_probs=63.3

Q ss_pred             ccCCCCCCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcceEEEEEEcCCHHHHHHHHHHhccC
Q psy7458          30 IETRSGAPNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLYNVHHFWCYKDLASRKETRESAWRS  108 (139)
Q Consensus        30 ~~~~~~~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n~v~~lw~y~~~~~r~~~r~~~~~~  108 (139)
                      .++... +||..+-+++++||+.++|.+.+.+.  .+..- ..+.+-.. ...+.++++.+=.|+|.++.++.    .+.
T Consensus        16 ~n~~~~-~Mi~via~~~vkpg~~~ef~~~l~~~--~r~Ep-Gcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH----~~s   87 (122)
T 4dn9_A           16 ENLYFQ-SMYGLIGKMRATPGQRDALIAILVEG--ASSMP-GCLSYVVAQDPKDPDAIWITEVWDSPESHKAS----LSL   87 (122)
T ss_dssp             -------CCEEEEEEEEESTTCHHHHHHHHHHH--TTTCT-TEEEEEEEEETTEEEEEEEEEEESCHHHHHHG----GGS
T ss_pred             cCccCC-CcEEEEEEEEECCCCHHHHHHHHHHH--HhCCC-CCEEEEEEecCCCCCEEEEEEEECCHHHHHHH----HcC
Confidence            344555 89999999999999999999987543  23222 44444433 44557889888889999886554    589


Q ss_pred             CChhhhhhcccccceeeee
Q psy7458         109 PGWDECVAYTVPLIREMQS  127 (139)
Q Consensus       109 ~~w~~~~~~~~~~i~~~~s  127 (139)
                      |.++++.+...+++.+...
T Consensus        88 ~~f~~~~~~~~~ll~~~p~  106 (122)
T 4dn9_A           88 PSVQDAIACGRPLIAALDE  106 (122)
T ss_dssp             HHHHHHHHHHGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCe
Confidence            9999998888888876543

>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A

Probab=96.91  E-value=0.028  Score=38.02  Aligned_cols=90  Identities=10%  Similarity=0.100  Sum_probs=65.2

Q ss_pred             CCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          36 APNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        36 ~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      ..||..+-+++++|| .++|.+.|.+....-...-..+++-.- ..++.++++-+-.|+|.++.++-.    ++|++++.
T Consensus        21 ~~mi~via~~~V~pg-~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~~p~~yv~~~~W~s~ea~~a~~----~S~~f~a~   95 (128)
T 3kg0_A           21 ADEVTFVNRFTVHGA-PAEFESVFARTAAFFARQPGFVRHTLLRERDKDNSYVNIAVWTDHDAFRRAL----AQPGFLPH   95 (128)
T ss_dssp             CCCEEEEEEEEECSC-HHHHHHHHHHHHHHHHTSTTEEEEEEEECTTCSSEEEEEEEESSHHHHHHHH----HCGGGHHH
T ss_pred             CCcEEEEEEEEeCCC-HHHHHHHHHHHHHHHhcCCCccEEEEEEcCCCCCEEEEEEEECCHHHHHHHH----cCHHHHHH
Confidence            479999999999999 999999999966543333345554433 233458999999999999988875    58888887


Q ss_pred             hhcccccceeeeeeeee
Q psy7458         115 VAYTVPLIREMQSRILL  131 (139)
Q Consensus       115 ~~~~~~~i~~~~s~ll~  131 (139)
                      .+...+++.. +..++.
T Consensus        96 ~~~l~~~~~~-~p~lye  111 (128)
T 3kg0_A           96 ATALRALSTS-EHGLFT  111 (128)
T ss_dssp             HHHHHHHEEE-EEEEEC
T ss_pred             HHhhhhhccC-CCeeEE
Confidence            7666555543 344433

>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}

Probab=96.25  E-value=0.029  Score=41.29  Aligned_cols=92  Identities=8%  Similarity=0.060  Sum_probs=69.5

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHh-Hh-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAI-TH-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l-~~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      ..|+-+-..+++||+.++|.+.+.+.+ +. +..-|.+.-.+..+.++.|+++.+=.|.|.++.++..    +.|-++++
T Consensus         5 ~pi~~i~~~~vkp~~~~~f~~~~~~~~~~s~~~E~G~l~y~~~~~~~~p~~~~~~E~y~d~~A~~~H~----~s~h~~~~   80 (220)
T 3f44_A            5 TPIFKIKKLTIAENDRSEYIRYAEKNMHDSIPAEEGTLLIGSGHDDAHGEDNYEIEVFRNKGAEDLHI----AGSHADDF   80 (220)
T ss_dssp             CCEEEEEEEEECGGGHHHHHHHHHHHHHHHTTTSTTEEEEEEEEETTEEEEEEEEEEESSHHHHHHHH----TSHHHHHH
T ss_pred             CcEEEEEEEEECcchHHHHHHHHHHHhhhhhccCCCeEEEEEEecCCCCcEEEEEEEECCHHHHHHHh----cCHHHHHH
Confidence            468888899999999999999999854 44 4455666545555666678999999999999988884    78888888


Q ss_pred             hhcccccceeeeeeeeee
Q psy7458         115 VAYTVPLIREMQSRILLP  132 (139)
Q Consensus       115 ~~~~~~~i~~~~s~ll~p  132 (139)
                      .....+++.+.....+.|
T Consensus        81 ~~~~~~~l~~~~~~~l~p   98 (220)
T 3f44_A           81 VETVNKIATKQKVIDLHP   98 (220)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhhCCceeeeee
Confidence            877667666555444444

>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}

Probab=95.93  E-value=0.049  Score=40.20  Aligned_cols=87  Identities=7%  Similarity=-0.051  Sum_probs=69.6

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHh-Hh-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAI-TH-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l-~~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      ..|+-+-..+++||+.++|.+...+.+ +. |..-|.+.-.+..+.++.|+++-+=.|.|.++.++..    +.|-++++
T Consensus         5 ~pi~~ia~~~vkp~~~~~f~~~~~~~~~~s~r~EpG~l~y~~~~~~~~p~~fv~~E~y~d~~A~~~H~----~s~Hf~~f   80 (219)
T 3mcs_A            5 VPILNVYDFEVKKDKETSYKSATEDYVNKTMGVEQGVLGLFAATDERDKTTSYIVEIYNDYLAFSNHT----KNQASKDF   80 (219)
T ss_dssp             CCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECSSSCEEEEEEEESSHHHHHHHH----HSHHHHHH
T ss_pred             ccEEEEEEEEECcCcHHHHHHHHHHHhhhhhhcCCCeEEEEEEeeCCCCCEEEEEEEECCHHHHHHHh----CCHHHHHH
Confidence            568889999999999999999999854 44 5555666656666777789999999999999988874    78888888


Q ss_pred             hhcccccceeeee
Q psy7458         115 VAYTVPLIREMQS  127 (139)
Q Consensus       115 ~~~~~~~i~~~~s  127 (139)
                      .....+++.+...
T Consensus        81 ~~~~~~~l~~~~~   93 (219)
T 3mcs_A           81 KAVIPQIAEGNLN   93 (219)
T ss_dssp             HHHHHHHEEEEEE
T ss_pred             HHHHHHHHhCCcc
Confidence            8777777776443

>2ril_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, putative monooxygenase, antibiotic biosynthe monooxygenase, structural genomics; HET: MSE; 1.26A {Shewanella loihica}

Probab=95.92  E-value=0.1  Score=33.05  Aligned_cols=66  Identities=3%  Similarity=0.011  Sum_probs=46.7

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEE-EeeeCCcce--EEEEEEcCCHHHHHHHH
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF-FSQVGRLYN--VHHFWCYKDLASRKETR  102 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w-~te~G~~n~--v~~lw~y~~~~~r~~~r  102 (139)
                      .||..+-+++++||+.++|.+.+.+.+..-...-..+++= ....++.++  ++-+-.|+|.++.++..
T Consensus         4 ~mi~~i~~~~v~pg~~~~f~~~~~~~~~~~~~~pG~i~~~l~~~~~~~~~~~~~~~~~W~s~ea~~a~~   72 (99)
T 2ril_A            4 APVTLINPFKVPADKLEAAIEYWEAHRDFMAQQPGYLSTQLHQSIDEGATYQLINVAIWQSEADFYQAA   72 (99)
T ss_dssp             CCEEEEEEEBCCTTCHHHHHHHHHHHHHHHTTSTTEEEEEEEECSSTTSSCSEEEEEEESCHHHHHHHH
T ss_pred             ceEEEEEEEEECCccHHHHHHHHHHHHHHHhcCCCeeeEEEeecCCCCCeEEEEEEEEECCHHHHHHHH
Confidence            5899999999999999999999998665322222333332 222233454  58999999999998843

>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}

Probab=95.65  E-value=0.1  Score=35.07  Aligned_cols=65  Identities=8%  Similarity=-0.022  Sum_probs=47.3

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcceEEEEEEcCCHHHHHHHH
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLYNVHHFWCYKDLASRKETR  102 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n~v~~lw~y~~~~~r~~~r  102 (139)
                      ||..+-+++++||+.++|.+.|.+....-...-..+|+-.- ...+.++++-+-.|+|.++.++-+
T Consensus         2 mivvi~~~~V~pg~~~efe~~~~~~~~~~~~~pGfl~~~L~r~~~~p~~yv~~~~WeS~ea~~aw~   67 (124)
T 3hx9_A            2 PVVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEAFQAWA   67 (124)
T ss_dssp             CEEEEEEECCCTTCHHHHHHHHHHTTTTTTTCTTEEEEEEEEEEESCCSEEEEEEESCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCEEEEEEEECCHHHHHHHH
Confidence            68899999999999999999999865432232244444322 233458899999999999887654

>1lq9_A Actva-ORF6 monooxygenase; aromatic polyketides, actinorhodin, dihydroka streptomyces coelicolor, oxidoreductase; HET: PG4; 1.30A {Streptomyces coelicolor} SCOP: d.58.4.3 PDB: 1n5q_A* 1n5s_A* 1n5t_A* 1n5v_A*

Probab=95.14  E-value=0.1  Score=34.39  Aligned_cols=95  Identities=11%  Similarity=0.030  Sum_probs=64.1

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhH--hhhhcCceeEE-EEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAIT--HRRNNDEAFAG-FFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~--~~~~~~~lvG~-w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      +.+.=.++..++||+.++|.+.+.+.+.  .+..-| .+++ .....++ ++++.+=.|+|.++.++.-.+=.++|.+++
T Consensus         9 ~~v~iva~~~~~pg~~~~~~~~l~~~~~~~~r~epG-~i~y~Lh~~~d~-~~~v~~e~W~s~ea~~ah~~~~~~s~~f~~   86 (112)
T 1lq9_A            9 GFVAVVTFPVDGPATQHKLVELATGGVQEWIREVPG-FLSATYHASTDG-TAVVNYAQWESEQAYRVNFGADPRSAELRE   86 (112)
T ss_dssp             CEEEEEEEEBSSHHHHHHHHHHHTTTTTGGGGGSTT-EEEEEEEEETTS-SEEEEEEEESCHHHHHHHTTTSHHHHHHHH
T ss_pred             CEEEEEEEEecCcchHHHHHHHHHHHHHHHhhcCCC-eEEEEEEEcCCC-CeEEEEEEECCHHHHHHHHhcccCCHHHHH
Confidence            5566667777899999999999998764  343323 3333 2222322 455888889999888776111035677888


Q ss_pred             hhhcccccceeeeeeeeeec
Q psy7458         114 CVAYTVPLIREMQSRILLPT  133 (139)
Q Consensus       114 ~~~~~~~~i~~~~s~ll~p~  133 (139)
                      +......++.+.....|.|.
T Consensus        87 ~~~~~~~l~~~~~~~~~~~~  106 (112)
T 1lq9_A           87 ALSSLPGLMGPPKAVFMTPR  106 (112)
T ss_dssp             HHHTSTTBCSCCEEEEEEEE
T ss_pred             HHHHhHHHhcCccceEEEEc
Confidence            87778888887777777764

>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5

Probab=95.07  E-value=0.18  Score=33.11  Aligned_cols=74  Identities=11%  Similarity=-0.043  Sum_probs=52.6

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEE--EEeeeC-CcceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAG--FFSQVG-RLYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~--w~te~G-~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      .||.++-.++++||+.++|.+.|.+. ..-...-..+|+  +.+... +.+.++-+-.|+|.++..+    ..+++++++
T Consensus         6 ~Mi~vi~~~~V~~g~~~~fe~~~~~~-~~l~~~pGFi~~~llr~~~~~~~~~y~~~~~W~s~eaf~a----w~~S~~f~~   80 (114)
T 1tz0_A            6 YMFIETKTFTVKEGTSNIVVERFTGE-GIIEKFEGFIDLSVLVKKVRRGDEEVVVMIRWESEEAWKN----WETSEEHLA   80 (114)
T ss_dssp             CCEEEEEEEEECTTCHHHHHHHTCSC-CSGGGBTTEEEEEEEECCCSSSSEEEEEEEEESCHHHHHH----HHTCSCCCG
T ss_pred             ceEEEEEEEEECCCcHHHHHHHHhcc-chhhcCCCeeEEEEEEcCCCCCCcEEEEEEEECCHHHHHH----HHcCHHHHH
Confidence            39999999999999999999999886 433333344443  333331 3578999999999998653    346666655


Q ss_pred             hh
Q psy7458         114 CV  115 (139)
Q Consensus       114 ~~  115 (139)
                      ..
T Consensus        81 ~~   82 (114)
T 1tz0_A           81 GH   82 (114)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}

Probab=94.76  E-value=0.15  Score=36.03  Aligned_cols=75  Identities=8%  Similarity=-0.048  Sum_probs=48.2

Q ss_pred             CCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEE--EeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          36 APNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF--FSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        36 ~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w--~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      ..||+.+-..+++||+.++|.+.|.+....-...-..+|+-  .+.. + ++++-+-.|+|.++.++    ..+++++++
T Consensus        69 ~~m~~vin~~~V~pg~~~~Fe~~~~~~~~~l~~~pGfi~~~llr~~~-~-~~y~~~t~Wes~eaf~a----w~~S~~f~~  142 (172)
T 3tvz_A           69 HPGFAVLNNIAVTQEGRPLFENKFKNRAGKVENEPGFEAIRVLRPLD-S-DTYVILTLWETERAFQD----WQQSDSYKE  142 (172)
T ss_dssp             CCSEEEEEEEECCGGGHHHHHHHHTSSHHHHTTSTTEEEEEEEEESS-S-SEEEEEEEESCHHHHHH----HTCC-----
T ss_pred             CCcEEEEEEEEcCCCcHHHHHHHHHHhHHHHhcCCCceEEEEEecCC-C-CEEEEEEEECCHHHHHH----HHcCHHHHH
Confidence            37999999999999999999999987443322222444433  3333 3 78999999999997554    357787777


Q ss_pred             hhh
Q psy7458         114 CVA  116 (139)
Q Consensus       114 ~~~  116 (139)
                      .-+
T Consensus       143 ah~  145 (172)
T 3tvz_A          143 AHK  145 (172)
T ss_dssp             ---
T ss_pred             HHH
Confidence            543

>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*

Probab=94.59  E-value=0.14  Score=32.87  Aligned_cols=72  Identities=11%  Similarity=0.010  Sum_probs=51.0

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCc--ceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRL--YNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~--n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      .||..+-+++++||+.++|.+.|.+. ..-...-..+|+-.. ...+.  ++++-+-.|+|.++.++-    .++|.+++
T Consensus         1 ~Mi~vi~~~~v~pg~~~~f~~~~~~~-~~~~~~pG~l~~~l~r~~~~~~~~~~~~~~~W~s~ea~~a~----~~s~~f~~   75 (109)
T 1sqe_A            1 HMFMAENRLQLQKGSAEETIERFYNR-QGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNW----LNSDVFKE   75 (109)
T ss_dssp             CCEEEEEEEEECTTCHHHHGGGGGCC-TTGGGSTTEEEEEEEEETTCSSSEEEEEEEEESCHHHHHHH----HTSHHHHH
T ss_pred             CEEEEEEEEEECCCcHHHHHHHHhcc-cccccCCCeEEEEEEEcCCCCCCcEEEEEEEECCHHHHHHH----HcCHHHHH
Confidence            38999999999999999999988876 433333344444333 23334  899999999999987755    35555544

>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A

Probab=94.53  E-value=0.21  Score=32.15  Aligned_cols=73  Identities=10%  Similarity=0.032  Sum_probs=51.5

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcc--eEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLY--NVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n--~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      ||..+-+++++||+.++|.+.|.+. ..-...-..+|+-.- ...+.+  .++-+-.|+|.++.++-    .+++.+++.
T Consensus         4 Mi~vi~~~~v~pg~~~~f~~~~~~~-~~~~~~pG~i~~~l~r~~~~~~~~~~~~~~~W~s~ea~~a~----~~s~~f~~~   78 (109)
T 2zdo_A            4 KFMAEARLTLTKGTAKDIIERFYTR-HGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDW----LKSDVFKAA   78 (109)
T ss_dssp             CEEEEEEEEEETTCHHHHHHHTTSC-CSGGGCTTEEEEEEEEETTCSSEEEEEEEEEESCHHHHHHH----HTSHHHHHH
T ss_pred             EEEEEEEEEeCCCCHHHHHHHHhcc-cccccCCCeEEEEEEecCCCCCceEEEEEEEECCHHHHHHH----HcCHHHHHH
Confidence            7999999999999999999998886 433233344444332 223333  89999999999987654    356666664


Q ss_pred             h
Q psy7458         115 V  115 (139)
Q Consensus       115 ~  115 (139)
                      .
T Consensus        79 ~   79 (109)
T 2zdo_A           79 H   79 (109)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3fgv_A Uncharacterized protein with ferredoxin-like fold; phosphoserine aminotransferase SERC, structural genomics; HET: MSE; 1.30A {Silicibacter pomeroyi dss-3}

Probab=91.90  E-value=1.7  Score=28.15  Aligned_cols=82  Identities=2%  Similarity=-0.050  Sum_probs=50.7

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhc
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAY  117 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~  117 (139)
                      ++.-+=+-+++||+.++|.+.+.+.++.-+..-..+++-+...-+.+.-..+=.|+|.++.++.+    +.+..+.+.++
T Consensus        14 ~~~Via~l~~kp~~~~~~~~~~~~lv~~tr~e~Gci~~~y~L~qd~~~p~~fE~W~s~eal~~h~----~~~~~~~~~~~   89 (106)
T 3fgv_A           14 REVVIVKSTPQRGKFNAFAELVGKLVSETRDFPGCLGAYLMLAPERNEQVVMHIWETPDALEAYL----TWRADRGDFLE   89 (106)
T ss_dssp             CEEEEEEECBCTTCHHHHHHHHHHHHHHHHTSTTEEEEEEEEEGGGTEEEEEEEESSHHHHHHHH----HHHTTCHHHHH
T ss_pred             eEEEEEEEEECCCCHHHHHHHHHHHHHHHhCCCCCCcceEEEecCCCCCCEEEEECCHHHHHHHH----cCHHHHHHHHH
Confidence            36677788999999999999999977653343445553222222222222226778888887654    34444455555


Q ss_pred             ccccce
Q psy7458         118 TVPLIR  123 (139)
Q Consensus       118 ~~~~i~  123 (139)
                      .++++.
T Consensus        90 l~~lla   95 (106)
T 3fgv_A           90 INEYLE   95 (106)
T ss_dssp             GGGGBS
T ss_pred             HHHHhc
Confidence            666655

>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*

Probab=87.90  E-value=5.8  Score=28.34  Aligned_cols=75  Identities=9%  Similarity=-0.010  Sum_probs=53.3

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      .+++-+-.++++||..++|.+.|.+....-...-..+++..-..=+.++++-+-.++|.++..+=+    +++++++.-
T Consensus        84 ~gfvv~n~~~V~~g~~~~Fe~~f~~~~~~l~~~pGFis~eLLr~~~~~~yv~lT~WeseeaF~aW~----~S~afr~ah  158 (186)
T 3fj2_A           84 FGIVVFEYIQLRDEEIPIFLQMYQHASLHFSETPGLQSTKLTKAMNTNQFLIVSFWDSEVFFQEWK----KTPLHKEIT  158 (186)
T ss_dssp             CSEEEEEEEECCGGGHHHHHHHHHHHHTTGGGSTTEEEEEEEEETTSSEEEEEEEESSHHHHHHHT----TSHHHHHHH
T ss_pred             CCEEEEEEEEcCcccHHHHHHHHHHhHHhhhcCCCceEEEEEecCCCCEEEEEEEECCHHHHHHHH----cCHHHHHHH
Confidence            679999999999999999999998754432233355554433211257999999999998887653    666666644

>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ??? ferredoxin-like fold tetracenomycin C biosynthes unknown function; 1.90A {Streptomyces glaucescens} SCOP: d.58.4.8

Probab=85.18  E-value=3.9  Score=26.85  Aligned_cols=79  Identities=9%  Similarity=0.006  Sum_probs=52.3

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHH----hHhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARA----ITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~----l~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      |-.-|-++.++||..++.-++|.+.    ++...  | ..+-..=..++  -++||-.+++.....  -.+...+|++++
T Consensus         2 M~r~lIVaRm~pg~~~~VA~iFae~D~telP~~~--G-v~rR~LF~~~d--lY~HLie~d~d~~~~--i~~~r~~P~f~~   74 (109)
T 1tuw_A            2 AYRALMVLRMDPADAEHVAAAFAEHDTTELPLEI--G-VRRRVLFRFHD--LYMHLIEADDDIMER--LYQARSHPLFQE   74 (109)
T ss_dssp             CEEEEEEEEECGGGHHHHHHHHHHHTTSSHHHHH--T-CCEEEEEEETT--EEEEEEEESSCCHHH--HHHTTSCGGGHH
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHhcCCCcCchhc--C-ceeeEEEEeCC--EEEEEEeccCCchHH--HHHHhcCcHHHH
Confidence            3456889999999999999999883    33221  1 12221113344  899999999432222  356679999999


Q ss_pred             hhhcccccce
Q psy7458         114 CVAYTVPLIR  123 (139)
Q Consensus       114 ~~~~~~~~i~  123 (139)
                      ....+.++|.
T Consensus        75 i~~~L~~yi~   84 (109)
T 1tuw_A           75 VNERVGQYLT   84 (109)
T ss_dssp             HHHHHHTTEE
T ss_pred             HHHHHHHhcC
Confidence            8776666654

>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16

Probab=83.52  E-value=4.5  Score=25.69  Aligned_cols=70  Identities=10%  Similarity=0.142  Sum_probs=42.1

Q ss_pred             EEEEEEEec-CCCHHHHHHHHHHHhHhhhhcCceeEE---EEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          40 YEVRSYSLK-PGTMIEWGNNWARAITHRRNNDEAFAG---FFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        40 yElRtY~lk-pg~~~~~~~~~~~~l~~~~~~~~lvG~---w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      |=+-.+++. +....+|.+.....+.  +..|+++..   -....|+...-+.|.+|+|+++-.+-    +++|++++..
T Consensus         7 Y~I~~~~v~d~e~y~~Y~~~~~~~~~--~~gGr~l~~g~~~~~~eG~~~~~~viieFpS~~aa~~~----~~s~~Yq~a~   80 (99)
T 2fiu_A            7 YWIAQVDVRDSERYKDYVSTAKPAFE--RFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDC----YNSPEYQAAA   80 (99)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHHHH--HTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHH----HHSHHHHHHH
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHHHHH--HcCcEEEEECCCceEEecCCcCeEEEEECCCHHHHHHH----HcCHHHHHHH
Confidence            444444443 3334444444333332  234577633   33456775558889999999887655    6899999865

>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18

Probab=82.45  E-value=6.2  Score=27.00  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             eEEEEEEEecCCCHHHHHHHHHHHhHhhhhcC--ceeEEEEeee--CCc------------ceE-EEEEEcCCHHHHHHH
Q psy7458          39 IYEVRSYSLKPGTMIEWGNNWARAITHRRNND--EAFAGFFSQV--GRL------------YNV-HHFWCYKDLASRKET  101 (139)
Q Consensus        39 iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~--~lvG~w~te~--G~~------------n~v-~~lw~y~~~~~r~~~  101 (139)
                      .++-=.--+.-.+.++|.+.-+.+-+..+.+|  +.+=+|-.++  |..            .+| .--..|+|-++|++.
T Consensus        27 YVDGFv~pVP~ankeaY~~~A~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~  106 (141)
T 2okq_A           27 YVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAA  106 (141)
T ss_dssp             EEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHH
T ss_pred             eEEEEEEECcHHHHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHH
Confidence            44444445566778999998887777767665  8888887764  221            234 444579999999999


Q ss_pred             HHHhccCCChhhh
Q psy7458         102 RESAWRSPGWDEC  114 (139)
Q Consensus       102 r~~~~~~~~w~~~  114 (139)
                      +++.++||.++..
T Consensus       107 ~~kvm~DPRm~~~  119 (141)
T 2okq_A          107 NQKMMSDPRMKEF  119 (141)
T ss_dssp             HHHHHTCHHHHHT
T ss_pred             HHHhhcCcccccc
Confidence            9999999998774

>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21

Probab=81.87  E-value=5  Score=25.89  Aligned_cols=68  Identities=7%  Similarity=0.079  Sum_probs=45.1

Q ss_pred             EEEecCCCHHHHHHHHHH----HhHhhhhcC-ceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCC---Chhhhh
Q psy7458          44 SYSLKPGTMIEWGNNWAR----AITHRRNND-EAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSP---GWDECV  115 (139)
Q Consensus        44 tY~lkpg~~~~~~~~~~~----~l~~~~~~~-~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~---~w~~~~  115 (139)
                      +-.|+||+.++|.+.-.+    .+..-+..| +--..|.  .|+.|.++.+..++|    +..++++.++|   +|.++.
T Consensus         7 ~~~L~p~~~~eY~~~H~~vWPEv~~~L~~aGi~~ysIfl--~~~~~~LF~~~E~~d----~~~~~~~a~~p~~q~W~~~M   80 (104)
T 1x8d_A            7 VMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYL--DKARNLLFAMVEIES----EERWNAVASTDVCQRWWKYM   80 (104)
T ss_dssp             EEECCTTCHHHHHHTTTTCCHHHHHHHHHTTEEEEEEEE--ETTTTEEEEEEEESC----HHHHHHGGGSHHHHHHHHHH
T ss_pred             EEEcChhHHHHHHHHHHhcCHHHHHHHHHcCCeEEEEEE--ECCCCeEEEEEEEcC----HHhHHhccCChHHHHHHHHH
Confidence            346799999999886544    233222333 5555553  466678999999998    24456777887   587766


Q ss_pred             hc
Q psy7458         116 AY  117 (139)
Q Consensus       116 ~~  117 (139)
                      ..
T Consensus        81 ~~   82 (104)
T 1x8d_A           81 TD   82 (104)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1vqsa_	110	d.58.4.13 (A:) Hypothetical protein Atu4242 {Agrob	6e-32
d1vqya1	104	d.58.4.13 (A:1-104) Hypothetical protein Atu5224 {	9e-31

>d1vqsa_ d.58.4.13 (A:) Hypothetical protein Atu4242 {Agrobacterium tumefaciens [TaxId: 358]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: NIPSNAP
domain: Hypothetical protein Atu4242
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  107 bits (268), Expect = 6e-32
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 39  IYEVRSYSLKPGTMIEWGNNWARAITH--RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLA 96
            YE+R+Y LK G +  +            + +  E    FFS++G +  + H W +  L 
Sbjct: 8   FYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLD 67

Query: 97  SRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSP 137
            R E R      P W   +     LI   +++I+ P  FSP
Sbjct: 68  DRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSP 108

>d1vqya1 d.58.4.13 (A:1-104) Hypothetical protein Atu5224 {Agrobacterium tumefaciens [TaxId: 358]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: NIPSNAP
domain: Hypothetical protein Atu5224
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  104 bits (260), Expect = 9e-31
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 39  IYEVRSYSLKPGTMIEWGNNWARAIT--HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLA 96
           I E R Y ++ G M E+                      F + +G L  V H W Y  L 
Sbjct: 2   IVEERIYRIRGGKMQEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIHMWGYASLD 61

Query: 97  SRKETRESAWRSPGWDECVAYTVPLIREMQSRILLPTSFSPTQ 139
            R E R        W   +     LI   ++RILLPT FSP +
Sbjct: 62  DRAERRGKLAEDQRWQAFIPRLSVLIESSENRILLPTDFSPLR 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1vqya1	104	Hypothetical protein Atu5224 {Agrobacterium tumefa	100.0
d1vqsa_	110	Hypothetical protein Atu4242 {Agrobacterium tumefa	100.0
d2pgca1	206	Uncharacterized protein GOS_2596953 {environmental	97.98
d1x7va_	98	Hypothetical protein PA3566 {Pseudomonas aeruginos	97.76
d1y0ha_	101	Hypothetical protein Rv0793 {Mycobacterium tubercu	97.46
d2omoa1	98	Hypothetical protein NE0621 {Nitrosomonas europaea	97.33
d1iuja_	102	Hypothetical protein TT1380 {Thermus thermophilus	97.05
d1tuva_	103	Hypothetical protein YgiN {Escherichia coli [TaxId	96.76
d2pd1a1	100	Hypothetical protein NE2512 {Nitrosomonas europaea	96.17
d1q8ba_	93	Hypothetical protein YjcS {Bacillus subtilis [TaxI	95.98
d2pgca1	206	Uncharacterized protein GOS_2596953 {environmental	91.47
d1lq9a_	112	Actinorhodin biosynthesis monooxygenase ActVa-Orf6	85.07
d2zdpa1	109	Hypothetical protein PG130 (SAV0165) {Staphylococc	84.22
d2fiua1	95	Hypothetical protein Atu0297 {Agrobacterium tumefa	81.66
d2ftra1	103	Hypothetical protein BH0200 {Bacillus halodurans [	81.55
d2okqa1	117	Hypothetical protein YbaA {Shigella flexneri [TaxI	80.87

>d1vqya1 d.58.4.13 (A:1-104) Hypothetical protein Atu5224 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: NIPSNAP
domain: Hypothetical protein Atu5224
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=6.3e-36  Score=199.19  Aligned_cols=102  Identities=30%  Similarity=0.485  Sum_probs=96.4

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHH-HhHhhhh-cCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWAR-AITHRRN-NDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~-~l~~~~~-~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      ||||||||+++||++++|++.|++ +++.... .+++||+|++++|++|+|+|||+|+|+++|++.|+++.+|++|+++.
T Consensus         1 miyElRtY~l~pg~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~G~~n~~~~lw~y~d~~~r~~~r~~~~~d~~W~~~~   80 (104)
T d1vqya1           1 MIVEERIYRIRGGKMQEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIHMWGYASLDDRAERRGKLAEDQRWQAFI   80 (104)
T ss_dssp             CEEEEEEEEECTTCHHHHHHHHHHTHHHHHHHHHCCEEEEEEEEESBSSEEEEEEEESCHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHHHhhhhhhhhcCceEEEEecccCCCceEEEEEECCCHHHHHHHHHHHHcCCcHHHHH
Confidence            799999999999999999999999 5676654 47999999999999999999999999999999999999999999998


Q ss_pred             hcccccceeeeeeeeeecCCCCCC
Q psy7458         116 AYTVPLIREMQSRILLPTSFSPTQ  139 (139)
Q Consensus       116 ~~~~~~i~~~~s~ll~p~~fsp~~  139 (139)
                      +..+++|.+++|.+|.|+||||+|
T Consensus        81 ~~~~~li~~~es~ll~p~~fSPlk  104 (104)
T d1vqya1          81 PRLSVLIESSENRILLPTDFSPLR  104 (104)
T ss_dssp             HHHHTTEEEEEEEEEEECTTCSCC
T ss_pred             HHHHHHHHHHheeEEeeCCCCCCC
Confidence            889999999999999999999996

>d1vqsa_ d.58.4.13 (A:) Hypothetical protein Atu4242 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: NIPSNAP
domain: Hypothetical protein Atu4242
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.2e-35  Score=200.04  Aligned_cols=104  Identities=27%  Similarity=0.513  Sum_probs=97.5

Q ss_pred             CCCceEEEEEEEecCCCHHHHHHHHHH-HhHhhhh-cCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChh
Q psy7458          35 GAPNIYEVRSYSLKPGTMIEWGNNWAR-AITHRRN-NDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWD  112 (139)
Q Consensus        35 ~~~~iyElRtY~lkpg~~~~~~~~~~~-~l~~~~~-~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~  112 (139)
                      ...||||||+|+++||++++|++.|++ .++.+.+ .+++||+|++++|++|+|+|||+|+|+++|++.|+++.+||+|+
T Consensus         4 ~~~miyElRtY~l~pg~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~G~~n~vvhlw~y~d~~~r~~~r~~~~~d~~W~   83 (110)
T d1vqsa_           4 HHHMFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWL   83 (110)
T ss_dssp             SSCCEEEEEEEEESTTCHHHHHHHHHHTHHHHHHHHHCCEEEEEEEEESSSSEEEEEEEESCHHHHHHHHHHHHHCHHHH
T ss_pred             cCCcEEEEEEEEecCCCHHHHHHHHHHHhHHHHHhhCCceEEEeccccCCCCeEEEEEeCCCHHHHHHHHHHHhcCccHH
Confidence            358999999999999999999999999 5666554 47999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccceeeeeeeeeecCCCCC
Q psy7458         113 ECVAYTVPLIREMQSRILLPTSFSPT  138 (139)
Q Consensus       113 ~~~~~~~~~i~~~~s~ll~p~~fsp~  138 (139)
                      ++.++..++|.+++|++|.|++|||+
T Consensus        84 ~~~~~~~~li~~~es~ll~P~~fSPl  109 (110)
T d1vqsa_          84 SFLPKIRDLIEVAENKIMKPARFSPL  109 (110)
T ss_dssp             HHTHHHHTTEEEEEEEEEEECTTCSC
T ss_pred             HHHHHHHHHHHHHheeEEEeCCCCCC
Confidence            98888899999999999999999997

>d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953 {environmental samples}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Marine metagenome family DABB3
domain: Uncharacterized protein GOS 2596953
species: environmental samples

Probab=97.98  E-value=4e-05  Score=54.02  Aligned_cols=84  Identities=10%  Similarity=0.010  Sum_probs=65.4

Q ss_pred             CCceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcC-ceeEEEEeeeCC-cceEEEEEEcCCHHHHHHHHHHhccCCChhh
Q psy7458          36 APNIYEVRSYSLKPGTMIEWGNNWARAITHRRNND-EAFAGFFSQVGR-LYNVHHFWCYKDLASRKETRESAWRSPGWDE  113 (139)
Q Consensus        36 ~~~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~-~lvG~w~te~G~-~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~  113 (139)
                      +..++-++.|.+.++...+|+++|.+........+ ..+++...-.|+ ..+.+....|+|+++..+..+++..||+|++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~G~~~~th~v~~~~~Sm~~l~~~~d~~~~s~~f~~  190 (206)
T d2pgca1         111 HPKYIVLTRAEAAMSDKDKFLNCINDTASCFKDNGALTLRFGNLLTGSNVGNYLLGVGYPSMEAIEKTYDELLAHSSYKE  190 (206)
T ss_dssp             CCSEEEEEEEECCGGGHHHHHHHHHHTHHHHHHTTCCEEEEEEBCSBTTTTCEEEEEEESCHHHHHHHHHHHHTCHHHHH
T ss_pred             CCceEEEEEEEcCCCCHHHHHHHHHHHHHHHhccCCceEEEEeeecCCCcceEEEEEeCCCHHHHHHHHHHhhCCHHHHH
Confidence            35688899999999999999999988665554444 344444444565 3456667789999999999999999999999


Q ss_pred             hhhccc
Q psy7458         114 CVAYTV  119 (139)
Q Consensus       114 ~~~~~~  119 (139)
                      ++....
T Consensus       191 f~~~~~  196 (206)
T d2pgca1         191 LMTFAK  196 (206)
T ss_dssp             HTTTCE
T ss_pred             HHHHcc
Confidence            986544

>d1x7va_ d.58.4.11 (A:) Hypothetical protein PA3566 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein PA3566
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.76  E-value=0.00047  Score=42.85  Aligned_cols=92  Identities=8%  Similarity=0.001  Sum_probs=68.9

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhH-hhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAIT-HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~-~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      +|+-+-..++|||+.++|.+.+.+... .+..-|-+.-.+....++.|.++.+=.|.|.++.+..    .+.|.++++.+
T Consensus         5 ~i~via~~~~kpg~~~~~~~~l~~~~~~t~~epGcl~~~~~~~~~~~~~~~~~E~w~d~~a~~~H----~~s~~~~~~~~   80 (98)
T d1x7va_           5 PLTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYMIEQWRDDAALERH----QNTEHFLRFSR   80 (98)
T ss_dssp             CEEEEEEEEECTTCHHHHHHHHHHHHHHHHHSTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHH----HTSHHHHHHHT
T ss_pred             CEEEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCceEEEEEEcCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHHHH
Confidence            577788899999999999999998554 3433343332233444556888888888998887766    48888888888


Q ss_pred             cccccceeeeeeeeeec
Q psy7458         117 YTVPLIREMQSRILLPT  133 (139)
Q Consensus       117 ~~~~~i~~~~s~ll~p~  133 (139)
                      ...+++...+-..|.+.
T Consensus        81 ~~~~ll~~~~i~~~~~i   97 (98)
T d1x7va_          81 GNEALLQNVKIDQLYRL   97 (98)
T ss_dssp             TCGGGEEEEEEEEEECC
T ss_pred             HHHHhccCcEEEEEEec
Confidence            88889988888877764

>d1y0ha_ d.58.4.11 (A:) Hypothetical protein Rv0793 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein Rv0793
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=0.00089  Score=41.58  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=67.5

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHh-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITH-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      .|+-+-+.++|||+.++|.+.+.+.+.. +..-|- +.+-....++.|+++.+=.|+|.++.++.    .+.|.++++..
T Consensus         5 ~i~v~~~~~~kpg~~~~~~~~l~~~~~~~r~E~Gc-l~y~~~~~~d~~~~~~~E~w~~~~a~~~H----~~s~~~~~~~~   79 (101)
T d1y0ha_           5 PVAVIARFMPRPDARSALRALLDAMITPTRAEDGC-RSYDLYESADGGELVLFERYRSRIALDEH----RGSPHYLNYRA   79 (101)
T ss_dssp             CEEEEEEECBCGGGHHHHHHHHHHHHHHHHHSTTE-EEEEEEEETTSSCEEEEEEESSHHHHHHH----HTSHHHHHHHT
T ss_pred             cEEEEEEEEECCchHHHHHHHHHHHHHHHhhCCCc-eEEEEEEcCCCCEEEEEEEECCHHHHHHH----hCCHHHHHHHH
Confidence            4777889999999999999999986654 433343 33333455666788777679999887766    57788888888


Q ss_pred             ccccccee-eeeeeeeecC
Q psy7458         117 YTVPLIRE-MQSRILLPTS  134 (139)
Q Consensus       117 ~~~~~i~~-~~s~ll~p~~  134 (139)
                      ...+++.+ .+-.++.|.+
T Consensus        80 ~~~~~l~~~~~i~~~~~l~   98 (101)
T d1y0ha_          80 QVGELLTRPVAVTVLAPLD   98 (101)
T ss_dssp             TSGGGBSSCCEEEEEEEEE
T ss_pred             HHHHHhcCCCEEEEEeccc
Confidence            78888775 5677776654

>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein NE0621
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.33  E-value=0.0013  Score=40.50  Aligned_cols=91  Identities=8%  Similarity=-0.047  Sum_probs=64.9

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHh-hhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITH-RRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~-~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      ||..+-..+++||+.++|.+++++.... +..-|-+--.+....++.|.++.+=.|+|.++.+..    .++|.++++..
T Consensus         1 M~~~i~~~~vkp~~~~~f~~~~~~~~~~~~~epG~l~~~~~~~~~~p~~~~~~E~w~s~~a~~~H----~~s~~~~~~~~   76 (98)
T d2omoa1           1 MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAH----KETAHYLTWRD   76 (98)
T ss_dssp             SEEEEEEEEBCGGGHHHHHHHHHHHHHHHTTSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHH----TTSHHHHHHHH
T ss_pred             CEEEEEEEEECcCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHH----HhCHHHHHHHH
Confidence            6788899999999999999999996654 333343333334445667888888889998887654    57888888887


Q ss_pred             cccccceee-eeeeeee
Q psy7458         117 YTVPLIREM-QSRILLP  132 (139)
Q Consensus       117 ~~~~~i~~~-~s~ll~p  132 (139)
                      ...+++... +...+.+
T Consensus        77 ~~~~ll~~p~~~~~~~~   93 (98)
T d2omoa1          77 TVADWMAEPRKGVIYGG   93 (98)
T ss_dssp             HHGGGBSSCCEEEEEEE
T ss_pred             HHHHHhcCCCEEEEEEE
Confidence            777776543 4444433

>d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein TT1380
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.0025  Score=39.73  Aligned_cols=73  Identities=5%  Similarity=0.008  Sum_probs=53.4

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEe-eeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFS-QVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~t-e~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      ||+-+-.++++||+.++|.+.|++....-...-..+++-.- ..++.|+++.+=.|+|.++.++-+    ++|++++.
T Consensus         1 M~vv~~~~~vkpg~~~~f~~~~~~~~~~~~~~pG~~~~~l~r~~~~~~~~~~~~~W~s~ea~~a~~----~s~~f~~a   74 (102)
T d1iuja_           1 MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWT----ESPAFKEG   74 (102)
T ss_dssp             CEEEEEEECBCGGGHHHHHHHHHHHGGGGTTSTTEEEEEEEEESSTTSCEEEEEEESCHHHHHHHH----TSHHHHHH
T ss_pred             CEEEEEEEEECCCcHHHHHHHHHHHHHHHhcCcCceEEEEEcCCCCCceEEEEEEECCHHHHHHHh----cCHHHHHH
Confidence            78889999999999999999998866543333345555433 334468888889999988877664    66666653

>d1tuva_ d.58.4.11 (A:) Hypothetical protein YgiN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein YgiN
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.013  Score=36.46  Aligned_cols=92  Identities=13%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             ceEEEEEEEecCCC--HHHHHHHHHHHh-HhhhhcCceeEEEEeee--------CCcceEEEEEEcCCHHHHHHHHHHhc
Q psy7458          38 NIYEVRSYSLKPGT--MIEWGNNWARAI-THRRNNDEAFAGFFSQV--------GRLYNVHHFWCYKDLASRKETRESAW  106 (139)
Q Consensus        38 ~iyElRtY~lkpg~--~~~~~~~~~~~l-~~~~~~~~lvG~w~te~--------G~~n~v~~lw~y~~~~~r~~~r~~~~  106 (139)
                      ||.=+-+.+++||+  .+++.+.+...+ ..|..-|-+.=-+..+.        .+.|+++.+=.|.|.++.+..    .
T Consensus         1 Mi~via~i~~kpg~e~~e~~~~~l~~~~~~tr~E~Gcl~Y~~~~d~~~~~~~~~~dp~~~~~~E~w~s~~a~~~H----~   76 (103)
T d1tuva_           1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAH----L   76 (103)
T ss_dssp             CEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHH----H
T ss_pred             CeEEEEEEEECCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEEeccccccccCCCCCCEEEEEEEECCHHHHHHH----h
Confidence            66777889999998  679999998855 44544443332233221        245788888889999888766    5


Q ss_pred             cCCChhhhhhcccccceeeeeeeeeec
Q psy7458         107 RSPGWDECVAYTVPLIREMQSRILLPT  133 (139)
Q Consensus       107 ~~~~w~~~~~~~~~~i~~~~s~ll~p~  133 (139)
                      +.|..+++.++..+++.+.+-++|.|.
T Consensus        77 ~t~h~~~f~~~~~~lv~~~~i~vl~p~  103 (103)
T d1tuva_          77 QTPHMKAYSEAVKGDVLEMNIRILQPG  103 (103)
T ss_dssp             TSHHHHHHHHHHTTTEEEEEEEEECCC
T ss_pred             CCHHHHHHHHHHHhhhccCEEEEecCC
Confidence            888889988888889999988888773

>d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein NE2512
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.17  E-value=0.027  Score=34.58  Aligned_cols=81  Identities=16%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             eEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhhcc
Q psy7458          39 IYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVAYT  118 (139)
Q Consensus        39 iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~~~  118 (139)
                      +.=+-+.++|||+.++|.+.+.+.+..-...-..+.++... .+.|+++.+=.|+|.++.+..    .+.+.++.+....
T Consensus         4 ~~~~v~~~~kpg~~~~~~~~l~~~~~~~~~E~Gcl~y~~~~-~~p~~~~~~E~w~d~~a~~aH----~~s~~~~~~~~~~   78 (100)
T d2pd1a1           4 LALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALK-FGPSTFGVFDAFADEAGRQAH----LNGQIAAALMANA   78 (100)
T ss_dssp             EEEEEEEEBCTTCHHHHHHHHHHTHHHHHTCTTEEEEEEEE-CSSSEEEEEEEESSHHHHHHH----HTSHHHHHHHHHH
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHHHHhhcCCCeeEEEEec-CCCcEEEEEEEeCChHHHHHH----HcCHHHHHHHHHh
Confidence            44567889999999999999988554322222344555444 356888888889998888877    4788888877666


Q ss_pred             ccccee
Q psy7458         119 VPLIRE  124 (139)
Q Consensus       119 ~~~i~~  124 (139)
                      .+++.+
T Consensus        79 ~~ll~~   84 (100)
T d2pd1a1          79 ATLLSS   84 (100)
T ss_dssp             HHHBSS
T ss_pred             HHHhcC
Confidence            666554

>d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Hypothetical protein YjcS
domain: Hypothetical protein YjcS
species: Bacillus subtilis [TaxId: 1423]

Probab=95.98  E-value=0.07  Score=32.40  Aligned_cols=89  Identities=3%  Similarity=-0.052  Sum_probs=65.2

Q ss_pred             CceEEEEEEEecCCC-HHHHHHHHHHHhH-hhhhcCceeEEEEeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhh
Q psy7458          37 PNIYEVRSYSLKPGT-MIEWGNNWARAIT-HRRNNDEAFAGFFSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDEC  114 (139)
Q Consensus        37 ~~iyElRtY~lkpg~-~~~~~~~~~~~l~-~~~~~~~lvG~w~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~  114 (139)
                      .||+=.-+..++|++ ++++.+.+++... .+..-|-+.-.+.....+.|+++.+=.|.|.++.+..    .+.|-++++
T Consensus         1 ~M~~v~a~~~v~~d~~~~~~~~~l~~l~~~tr~E~Gcl~y~~~~d~~~p~~~~~~E~w~d~~a~~~H----~~~~h~k~f   76 (93)
T d1q8ba_           1 SMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIH----FTKKHTIDV   76 (93)
T ss_dssp             CEEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTTEEEEEEEECCGGGCEEEEEEEESSHHHHHHH----TTSHHHHHH
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHhCCCCcEEEEEEecCCCCCEEEEEEEECCHHHHHHH----hcCHHHHHH
Confidence            478888899999999 8999999988554 4544444433334444556888888888999887666    688889998


Q ss_pred             hhcccccceeeeeee
Q psy7458         115 VAYTVPLIREMQSRI  129 (139)
Q Consensus       115 ~~~~~~~i~~~~s~l  129 (139)
                      .++..+.|...+...
T Consensus        77 ~a~~~~~ve~~e~~~   91 (93)
T d1q8ba_          77 QKQELTEVEWLMKSN   91 (93)
T ss_dssp             HTTTCEEEEEEEEEE
T ss_pred             HHhccchhheeeecc
Confidence            877777777666543

>d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953 {environmental samples}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Marine metagenome family DABB3
domain: Uncharacterized protein GOS 2596953
species: environmental samples

Probab=91.47  E-value=0.62  Score=31.44  Aligned_cols=79  Identities=13%  Similarity=-0.014  Sum_probs=54.5

Q ss_pred             eEEEEEEEecCCCHHHHHHHHHHHhH-hhhhcCceeEEEE-eeeCC-cceEEEEEEcCCHHHHHHHHHHhccCCChhhhh
Q psy7458          39 IYEVRSYSLKPGTMIEWGNNWARAIT-HRRNNDEAFAGFF-SQVGR-LYNVHHFWCYKDLASRKETRESAWRSPGWDECV  115 (139)
Q Consensus        39 iyElRtY~lkpg~~~~~~~~~~~~l~-~~~~~~~lvG~w~-te~G~-~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~  115 (139)
                      ..=++.=++..++.++.++...+... ...+.|-....|. ...|+ ..+...+..|+|+++.++.++.+.+||+|++++
T Consensus         6 ~~~~t~a~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~v~~G~~~gt~~i~~~y~s~~~~~~~~~~~~~~~~~~~l~   85 (206)
T d2pgca1           6 YVILTVASVDFSYRETMARLMSSYSKDLIDNAGAKGTRFGSIGTGDHAGSLIFIQFYDDLTGYQKALEIQSKSSVFKEIM   85 (206)
T ss_dssp             EEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTCCCCEEEEEECSBTTTTCEEEEEEESSHHHHHHHHHHHHHCHHHHHHH
T ss_pred             EEEEEEecCCCCcHHHHHHHHHHHHHHHHHhcCCeEEEEEEEecCCCcCcEEEEEEcCCHHHHHHHHHHhcCCHHHHHHH
Confidence            34455666777777788887766433 2333442222232 23354 468889999999999999999999999999987


Q ss_pred             hc
Q psy7458         116 AY  117 (139)
Q Consensus       116 ~~  117 (139)
                      ..
T Consensus        86 ~~   87 (206)
T d2pgca1          86 DS   87 (206)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d1lq9a_ d.58.4.3 (A:) Actinorhodin biosynthesis monooxygenase ActVa-Orf6 {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Actinorhodin biosynthesis monooxygenase ActVa-Orf6
domain: Actinorhodin biosynthesis monooxygenase ActVa-Orf6
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.07  E-value=1.7  Score=27.11  Aligned_cols=91  Identities=10%  Similarity=0.056  Sum_probs=56.7

Q ss_pred             CceEEEEEEEe-cCCCHHHHHHHHHHHhHhhh-hcCceeEEE--EeeeCCcceEEEEEEcCCHHHHHHHHHHhccC---C
Q psy7458          37 PNIYEVRSYSL-KPGTMIEWGNNWARAITHRR-NNDEAFAGF--FSQVGRLYNVHHFWCYKDLASRKETRESAWRS---P  109 (139)
Q Consensus        37 ~~iyElRtY~l-kpg~~~~~~~~~~~~l~~~~-~~~~lvG~w--~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~---~  109 (139)
                      .+++-+-++.+ .|++..++++.+.++..... ..-..|+.-  .+..|  .+|+++=.++|.++.++.   +.++   +
T Consensus         8 ~G~~tvi~~~~~~P~~Q~~lvdal~~~~~~~~~~qPGfis~~lh~s~dg--~rv~NyAqW~S~e~~~Aa---~~~~~r~~   82 (112)
T d1lq9a_           8 VGFVAVVTFPVDGPATQHKLVELATGGVQEWIREVPGFLSATYHASTDG--TAVVNYAQWESEQAYRVN---FGADPRSA   82 (112)
T ss_dssp             CCEEEEEEEEBSSHHHHHHHHHHHTTTTTGGGGGSTTEEEEEEEEETTS--SEEEEEEEESCHHHHHHH---TTTSHHHH
T ss_pred             CCcEEEEEEEccChHHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEecCC--CeEEEEEEeCCHHHHHHH---HhCCccCH
Confidence            46677777766 69999999998877554321 222333222  23334  589999999999988764   2222   2


Q ss_pred             Chhhhhhcccccceeeeeeeeee
Q psy7458         110 GWDECVAYTVPLIREMQSRILLP  132 (139)
Q Consensus       110 ~w~~~~~~~~~~i~~~~s~ll~p  132 (139)
                      +.++.+.+...+....+..++.|
T Consensus        83 e~~~~~~~~pgl~~~~~~v~~~p  105 (112)
T d1lq9a_          83 ELREALSSLPGLMGPPKAVFMTP  105 (112)
T ss_dssp             HHHHHHHTSTTBCSCCEEEEEEE
T ss_pred             HHHHHHhcCCcccCCChhheecc
Confidence            45554555555666666666665

>d2zdpa1 d.58.4.5 (A:0-108) Hypothetical protein PG130 (SAV0165) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein PG130 (SAV0165)
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.22  E-value=1.5  Score=26.88  Aligned_cols=64  Identities=9%  Similarity=-0.078  Sum_probs=44.2

Q ss_pred             ceEEEEEEEecCCCHHHHHHHHHHHhHhhhhcCceeEEE--EeeeC-CcceEEEEEEcCCHHHHHHHH
Q psy7458          38 NIYEVRSYSLKPGTMIEWGNNWARAITHRRNNDEAFAGF--FSQVG-RLYNVHHFWCYKDLASRKETR  102 (139)
Q Consensus        38 ~iyElRtY~lkpg~~~~~~~~~~~~l~~~~~~~~lvG~w--~te~G-~~n~v~~lw~y~~~~~r~~~r  102 (139)
                      ||.-+-.++++||..++|.+.|.+.-.+ ...-..+++-  .+..+ +.+.++-+-.++|.++-++=+
T Consensus         2 M~vv~n~~~V~~g~~~~fe~~f~~~~~l-~~~pGF~~~~llr~~~~~d~~~y~v~t~Weseeaf~aW~   68 (109)
T d2zdpa1           2 MFMAENRLQLQKGSAEETIERFYNRQGI-ETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWL   68 (109)
T ss_dssp             CEEEEEEEEECTTCHHHHHHTTSSCCSG-GGSTTEEEEEEEEECSCCSSEEEEEEEEESCHHHHHHHH
T ss_pred             EEEEEEEEEeCCCcHHHHHHHHhcccch-hcCCCcceEEEEecCCCCCCeEEEEEEEECCHHHHHHHH
Confidence            7888999999999999999999652111 1222334433  33333 345788889999988887764

>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Atu0297-like
domain: Hypothetical protein Atu0297
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.66  E-value=2.8  Score=24.84  Aligned_cols=66  Identities=9%  Similarity=0.090  Sum_probs=39.7

Q ss_pred             EEec-CCCHHHHHHHHHHHhHhhhhcCceeEEE---EeeeCCcceEEEEEEcCCHHHHHHHHHHhccCCChhhhhh
Q psy7458          45 YSLK-PGTMIEWGNNWARAITHRRNNDEAFAGF---FSQVGRLYNVHHFWCYKDLASRKETRESAWRSPGWDECVA  116 (139)
Q Consensus        45 Y~lk-pg~~~~~~~~~~~~l~~~~~~~~lvG~w---~te~G~~n~v~~lw~y~~~~~r~~~r~~~~~~~~w~~~~~  116 (139)
                      .+++ |.++.+|.+.....+.  +..|+.+..-   .+..|+....+.|..|+|+++..+-    ++||+.++...
T Consensus        10 ~~i~d~e~~~~Y~~~~~~~~~--~~GG~~l~rg~~~~~~EG~~~~~~viieFps~e~A~~~----~~SpeYq~~~~   79 (95)
T d2fiua1          10 VDVRDSERYKDYVSTAKPAFE--RFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDC----YNSPEYQAAAK   79 (95)
T ss_dssp             EEESCHHHHHHHHHHHHHHHH--HTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHH----HHSHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHHHH--HcCCEEEEECCceEEecCCCCceEEEEEcCCHHHHHHH----HCCHHHHHHHH
Confidence            3444 5556666666555543  2234555221   2234654444557899999887765    59999998653

>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: EthD-like
domain: Hypothetical protein BH0200
species: Bacillus halodurans [TaxId: 86665]

Probab=81.55  E-value=3.7  Score=24.47  Aligned_cols=76  Identities=9%  Similarity=0.051  Sum_probs=47.4

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHH-HhHhhhhcCceeEEEEe-----eeCC-cceEEEEEEcCCHHHHHHHHHHhccCC
Q psy7458          37 PNIYEVRSYSLKPGTMIEWGNNWAR-AITHRRNNDEAFAGFFS-----QVGR-LYNVHHFWCYKDLASRKETRESAWRSP  109 (139)
Q Consensus        37 ~~iyElRtY~lkpg~~~~~~~~~~~-~l~~~~~~~~lvG~w~t-----e~G~-~n~v~~lw~y~~~~~r~~~r~~~~~~~  109 (139)
                      +|.+.+..-.-+|+..++|.+.|.+ ++++-+..-.+.++..+     ..|+ .--.+-...|+|.++..+.    .++|
T Consensus         2 ~mm~k~~vly~~~~d~e~F~~yy~~~H~pl~~~~pg~~~y~~~~~~~~~~~~~~~~~vae~~F~d~e~l~~a----~~s~   77 (103)
T d2ftra1           2 NMMVKLIALYEQPEDKQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQA----MRTD   77 (103)
T ss_dssp             CEEEEEEEEEECCSCHHHHHHHHHHTHHHHHTTSTTCCEEEEEEEEEBTTBCCSEEEEEEEEESSHHHHHHH----HHSH
T ss_pred             CccEEEEEEEcCCCCHHHHHHHHHHhhHHHHHhcCCccEEEEEeeccCCCCCCCeeEEEEEEECCHHHHHHH----HcCc
Confidence            4556666555578888999999987 66664433234455433     1233 1224555678999988765    4677


Q ss_pred             Chhhhhh
Q psy7458         110 GWDECVA  116 (139)
Q Consensus       110 ~w~~~~~  116 (139)
                      ++++..+
T Consensus        78 ~~~~v~~   84 (103)
T d2ftra1          78 EGKASGK   84 (103)
T ss_dssp             HHHHHHH
T ss_pred             chHHHHh
Confidence            7776543

>d2okqa1 d.58.4.18 (A:1-117) Hypothetical protein YbaA {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: YbaA-like
domain: Hypothetical protein YbaA
species: Shigella flexneri [TaxId: 623]

Probab=80.87  E-value=4.3  Score=25.37  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             ecCCCHHHHHHHHHHHhHhhhhcC--ceeEEEEeee--CCc------------ceEE-EEEEcCCHHHHHHHHHHhccCC
Q psy7458          47 LKPGTMIEWGNNWARAITHRRNND--EAFAGFFSQV--GRL------------YNVH-HFWCYKDLASRKETRESAWRSP  109 (139)
Q Consensus        47 lkpg~~~~~~~~~~~~l~~~~~~~--~lvG~w~te~--G~~------------n~v~-~lw~y~~~~~r~~~r~~~~~~~  109 (139)
                      +.-++.++|.++-+.+-...+.||  +.+=+|-.++  |..            .+|+ .-..|+|-++|++..++.++||
T Consensus        11 VP~~n~~aY~~~A~~a~~v~~e~GAl~~vEcwgdDvp~gk~t~F~~av~ak~~EtVvFSwi~wpska~RD~~~~kvm~Dp   90 (117)
T d2okqa1          11 VPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDP   90 (117)
T ss_dssp             EEGGGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHHHTCH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEeCCHHHHHHHHHHHhhCc
Confidence            445678889888777777666665  7788887654  221            2344 4457999999999999999999


Q ss_pred             Chhhh
Q psy7458         110 GWDEC  114 (139)
Q Consensus       110 ~w~~~  114 (139)
                      .++..
T Consensus        91 rm~~~   95 (117)
T d2okqa1          91 RMKEF   95 (117)
T ss_dssp             HHHHT
T ss_pred             ccccc
Confidence            98774