Psyllid ID: psy7461

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV
cccccEEEEcccccccHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHcccccEEEEEcccccccccccccccHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHccccEEEEEcccHHHHHcccHHHHHHHHHHcc
ccccEEEEEEccEcccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHccccEEEEEccccccccEcccccccHHHHHHccccEEEEccHHHHHcccccHHHHHHHHHHHHHcccEEEEEEcccHHHHHcccHHHHHHHHHHHH
msrkfwvggnwkmngnkkEIEGIVDFLkkgpldpkvevvVGVPAIYLEYAkcllpsnvapaaqncykvpkgaftgelspamLVDVGIDWVILghserrnvfgepdSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV
msrkfwvggnwkmngnkkEIEGIVDFLkkgpldpkVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLeereagqteavvykQICCV
MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV
****FWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC*
*SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV
MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV
**RKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query149 2.2.26 [Sep-21-2011]
P82204248 Triosephosphate isomerase N/A N/A 0.979 0.588 0.719 3e-59
P29613247 Triosephosphate isomerase yes N/A 0.993 0.599 0.662 2e-52
O77458247 Triosephosphate isomerase N/A N/A 0.993 0.599 0.662 2e-52
Q7JNS1247 Triosephosphate isomerase N/A N/A 0.993 0.599 0.662 2e-52
Q90XG0248 Triosephosphate isomerase yes N/A 0.959 0.576 0.671 6e-52
P30741247 Triosephosphate isomerase N/A N/A 0.973 0.587 0.675 7e-52
P55275215 Triosephosphate isomerase N/A N/A 0.892 0.618 0.691 1e-51
Q10657247 Triosephosphate isomerase yes N/A 1.0 0.603 0.637 3e-51
Q1MTI4248 Triosephosphate isomerase no N/A 0.966 0.580 0.645 6e-51
Q589R5248 Triosephosphate isomerase N/A N/A 0.959 0.576 0.636 2e-50
>sp|P82204|TPIS_BOMMO Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2 Back     alignment and function desciption
 Score =  226 bits (577), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 125/146 (85%)

Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
           M RKF VGGNWKMNG+K +I  IV+ LKKGPLDP VEV+VGVPAIYL Y K ++P NV  
Sbjct: 1   MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 60

Query: 61  AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
           AAQNC+K PKGAFTGE+SPAM+ DVG++WVILGHSERR +FGE D L+AEKVAHALE+GL
Sbjct: 61  AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 120

Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
            V+ACIGE LEERE+G+TE VV++Q+
Sbjct: 121 KVIACIGETLEERESGKTEEVVFRQL 146

Bombyx mori (taxid: 7091)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 1
>sp|P29613|TPIS_DROME Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3 Back     alignment and function description
>sp|O77458|TPIS_DROYA Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1 Back     alignment and function description
>sp|Q7JNS1|TPIS_DROSI Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1 Back     alignment and function description
>sp|Q90XG0|TPISB_DANRE Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1 Back     alignment and function description
>sp|P30741|TPIS_CULTA Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2 Back     alignment and function description
>sp|P55275|TPIS_HELVI Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1 Back     alignment and function description
>sp|Q10657|TPIS_CAEEL Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2 Back     alignment and function description
>sp|Q1MTI4|TPISA_DANRE Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1 Back     alignment and function description
>sp|Q589R5|TPIS_ORYLA Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
114319091247 triosephosphate isomerase [Blattella ger 1.0 0.603 0.778 1e-62
156541964247 PREDICTED: triosephosphate isomerase-lik 1.0 0.603 0.785 2e-62
380014259247 PREDICTED: triosephosphate isomerase-lik 1.0 0.603 0.744 9e-60
307199049247 Triosephosphate isomerase [Harpegnathos 1.0 0.603 0.751 1e-59
307177170247 Triosephosphate isomerase [Camponotus fl 1.0 0.603 0.751 4e-59
148224276247 triosephosphate isomerase [Apis mellifer 1.0 0.603 0.738 4e-59
242011117247 triosephosphate isomerase, putative [Ped 1.0 0.603 0.744 5e-59
332024520247 Triosephosphate isomerase [Acromyrmex ec 1.0 0.603 0.744 7e-59
340722482 298 PREDICTED: triosephosphate isomerase-lik 1.0 0.5 0.738 1e-58
383849822247 PREDICTED: triosephosphate isomerase-lik 1.0 0.603 0.758 2e-58
>gi|114319091|gb|ABI63547.1| triosephosphate isomerase [Blattella germanica] Back     alignment and taxonomy information
 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 129/149 (86%)

Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
           M RKFWVGGNWKMNG+KK IE IV FL  GPLDP VEVVVG+PAIYLE  K +LPSNVA 
Sbjct: 1   MGRKFWVGGNWKMNGDKKGIEEIVKFLAAGPLDPNVEVVVGIPAIYLESTKNILPSNVAA 60

Query: 61  AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
           AAQNCYKVPKGAFTGE+SPAML D+GI+WVILGHSERRNVFGE D LI++KV HALE+GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMLNDIGINWVILGHSERRNVFGEKDDLISDKVVHALESGL 120

Query: 121 NVVACIGEKLEEREAGQTEAVVYKQICCV 149
           NVVACIGEKLEERE G+TE VV++Q   +
Sbjct: 121 NVVACIGEKLEEREGGKTEEVVFQQTKAI 149

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156541964|ref|XP_001600119.1| PREDICTED: triosephosphate isomerase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380014259|ref|XP_003691157.1| PREDICTED: triosephosphate isomerase-like [Apis florea] Back     alignment and taxonomy information
>gi|307199049|gb|EFN79773.1| Triosephosphate isomerase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307177170|gb|EFN66403.1| Triosephosphate isomerase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|148224276|ref|NP_001090623.1| triosephosphate isomerase [Apis mellifera] gi|145386848|gb|ABP65286.1| triosephoshpate isomerase [Apis mellifera] gi|190887259|gb|ACE95726.1| triosephoshpate isomerase [Apis mellifera] Back     alignment and taxonomy information
>gi|242011117|ref|XP_002426302.1| triosephosphate isomerase, putative [Pediculus humanus corporis] gi|212510370|gb|EEB13564.1| triosephosphate isomerase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332024520|gb|EGI64718.1| Triosephosphate isomerase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340722482|ref|XP_003399634.1| PREDICTED: triosephosphate isomerase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383849822|ref|XP_003700534.1| PREDICTED: triosephosphate isomerase-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
UNIPROTKB|P82204248 Tpi "Triosephosphate isomerase 0.979 0.588 0.719 1.1e-55
ZFIN|ZDB-GENE-020416-4248 tpi1b "triosephosphate isomera 0.959 0.576 0.671 1.1e-48
FB|FBgn0086355247 Tpi "Triose phosphate isomeras 0.986 0.595 0.666 1.8e-48
UNIPROTKB|O77458247 Tpi "Triosephosphate isomerase 0.986 0.595 0.666 1.8e-48
UNIPROTKB|Q7JNS1247 Tpi "Triosephosphate isomerase 0.986 0.595 0.666 1.8e-48
WB|WBGene00006601247 tpi-1 [Caenorhabditis elegans 0.979 0.591 0.650 1.2e-47
ZFIN|ZDB-GENE-020416-3248 tpi1a "triosephosphate isomera 0.966 0.580 0.645 1.2e-47
UNIPROTKB|P00940248 TPI1 "Triosephosphate isomeras 0.959 0.576 0.636 3.8e-46
UNIPROTKB|P54714249 TPI1 "Triosephosphate isomeras 0.966 0.578 0.590 1.2e-42
UNIPROTKB|Q5E956249 TPI1 "Triosephosphate isomeras 0.966 0.578 0.583 2.5e-42
UNIPROTKB|P82204 Tpi "Triosephosphate isomerase" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms
 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 105/146 (71%), Positives = 125/146 (85%)

Query:     1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
             M RKF VGGNWKMNG+K +I  IV+ LKKGPLDP VEV+VGVPAIYL Y K ++P NV  
Sbjct:     1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 60

Query:    61 AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
             AAQNC+K PKGAFTGE+SPAM+ DVG++WVILGHSERR +FGE D L+AEKVAHALE+GL
Sbjct:    61 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 120

Query:   121 NVVACIGEKLEEREAGQTEAVVYKQI 146
              V+ACIGE LEERE+G+TE VV++Q+
Sbjct:   121 KVIACIGETLEERESGKTEEVVFRQL 146
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-020416-4 tpi1b "triosephosphate isomerase 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0086355 Tpi "Triose phosphate isomerase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O77458 Tpi "Triosephosphate isomerase" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
UNIPROTKB|Q7JNS1 Tpi "Triosephosphate isomerase" [Drosophila simulans (taxid:7240)] Back     alignment and assigned GO terms
WB|WBGene00006601 tpi-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020416-3 tpi1a "triosephosphate isomerase 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P00940 TPI1 "Triosephosphate isomerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P54714 TPI1 "Triosephosphate isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E956 TPI1 "Triosephosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48500TPIS_RAT5, ., 3, ., 1, ., 10.58330.96640.5783yesN/A
Q6FRI3TPIS_CANGA5, ., 3, ., 1, ., 10.51331.00.6008yesN/A
Q29371TPIS_PIG5, ., 3, ., 1, ., 10.57630.96640.5806yesN/A
P00940TPIS_CHICK5, ., 3, ., 1, ., 10.61900.98650.5927yesN/A
P60174TPIS_HUMAN5, ., 3, ., 1, ., 10.58330.96640.5034yesN/A
P60175TPIS_PANTR5, ., 3, ., 1, ., 10.58330.96640.5783yesN/A
B0BM40TPIS_XENTR5, ., 3, ., 1, ., 10.60410.96640.5806yesN/A
Q5E956TPIS_BOVIN5, ., 3, ., 1, ., 10.58330.96640.5783yesN/A
Q5R928TPIS_PONAB5, ., 3, ., 1, ., 10.58330.96640.5783yesN/A
P29613TPIS_DROME5, ., 3, ., 1, ., 10.66210.99320.5991yesN/A
Q750Y8TPIS_ASHGO5, ., 3, ., 1, ., 10.51.00.6008yesN/A
Q6CJG5TPIS_KLULA5, ., 3, ., 1, ., 10.48661.00.6008yesN/A
P54714TPIS_CANFA5, ., 3, ., 1, ., 10.59020.96640.5783yesN/A
P15426TPIS_MACMU5, ., 3, ., 1, ., 10.58330.96640.5783yesN/A
P04828TPIS_EMENI5, ., 3, ., 1, ., 10.51360.97980.5863yesN/A
Q90XG0TPISB_DANRE5, ., 3, ., 1, ., 10.67130.95970.5766yesN/A
P00939TPIS_RABIT5, ., 3, ., 1, ., 10.59020.96640.5806yesN/A
Q10657TPIS_CAEEL5, ., 3, ., 1, ., 10.63751.00.6032yesN/A
P17751TPIS_MOUSE5, ., 3, ., 1, ., 10.57630.96640.4816yesN/A
P48491TPIS_ARATH5, ., 3, ., 1, ., 10.52380.97310.5708yesN/A
Q6C2T9TPIS_YARLI5, ., 3, ., 1, ., 10.51020.97980.5910yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1.10.914
3rd Layer5.3.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
PTZ00333 255 PTZ00333, PTZ00333, triosephosphate isomerase; Pro 7e-64
cd00311242 cd00311, TIM, Triosephosphate isomerase (TIM) is a 2e-63
PRK00042 250 PRK00042, tpiA, triosephosphate isomerase; Provisi 9e-62
pfam00121242 pfam00121, TIM, Triosephosphate isomerase 6e-58
PLN02561 253 PLN02561, PLN02561, triosephosphate isomerase 1e-52
COG0149251 COG0149, TpiA, Triosephosphate isomerase [Carbohyd 5e-51
PRK13962 645 PRK13962, PRK13962, bifunctional phosphoglycerate 7e-42
PLN02429 315 PLN02429, PLN02429, triosephosphate isomerase 5e-36
PRK14566 260 PRK14566, PRK14566, triosephosphate isomerase; Pro 2e-32
PRK14565237 PRK14565, PRK14565, triosephosphate isomerase; Pro 4e-31
PRK14567 253 PRK14567, PRK14567, triosephosphate isomerase; Pro 3e-28
TIGR00419205 TIGR00419, tim, triosephosphate isomerase 1e-18
PRK14905 355 PRK14905, PRK14905, triosephosphate isomerase/PTS 1e-18
PRK15492 260 PRK15492, PRK15492, triosephosphate isomerase; Pro 1e-18
PRK04302223 PRK04302, PRK04302, triosephosphate isomerase; Pro 2e-06
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional Back     alignment and domain information 
 Score =  195 bits (498), Expect = 7e-64
 Identities = 75/148 (50%), Positives = 98/148 (66%), Gaps = 2/148 (1%)

Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDP-KVEVVVGVPAIYLEYAK-CLLPSNV 58
           M RK +VGGNWK NG K  I+ ++D   K   DP  V+VVV  P++++   +  L   N 
Sbjct: 2   MKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNF 61

Query: 59  APAAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALET 118
             ++QN      GAFTGE+S  ML D+GI+W ILGHSERR  FGE + ++A+KV +ALE 
Sbjct: 62  KISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALEN 121

Query: 119 GLNVVACIGEKLEEREAGQTEAVVYKQI 146
           GL V+ CIGE LEEREAGQT  V+ KQ+
Sbjct: 122 GLKVILCIGETLEEREAGQTSDVLSKQL 149

Length = 255
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate Back     alignment and domain information
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase Back     alignment and domain information
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase Back     alignment and domain information
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase Back     alignment and domain information
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase Back     alignment and domain information
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional Back     alignment and domain information
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 149
PLN02561 253 triosephosphate isomerase 100.0
PTZ00333 255 triosephosphate isomerase; Provisional 100.0
PRK14567 253 triosephosphate isomerase; Provisional 100.0
PRK15492 260 triosephosphate isomerase; Provisional 100.0
PRK00042 250 tpiA triosephosphate isomerase; Provisional 100.0
PRK14566 260 triosephosphate isomerase; Provisional 100.0
COG0149251 TpiA Triosephosphate isomerase [Carbohydrate trans 100.0
PLN02429 315 triosephosphate isomerase 100.0
cd00311242 TIM Triosephosphate isomerase (TIM) is a glycolyti 100.0
PRK14565237 triosephosphate isomerase; Provisional 100.0
PF00121244 TIM: Triosephosphate isomerase; InterPro: IPR00065 100.0
KOG1643|consensus247 100.0
PRK14905 355 triosephosphate isomerase/PTS system glucose/sucro 100.0
PRK13962 645 bifunctional phosphoglycerate kinase/triosephospha 100.0
TIGR00419205 tim triosephosphate isomerase. Triosephosphate iso 100.0
PRK04302223 triosephosphate isomerase; Provisional 100.0
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 94.15
PLN02591250 tryptophan synthase 87.86
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 87.39
PRK08057248 cobalt-precorrin-6x reductase; Reviewed 86.93
>PLN02561 triosephosphate isomerase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-58  Score=377.80  Aligned_cols=148  Identities=51%  Similarity=0.851  Sum_probs=138.8

Q ss_pred             CCCccEEEEecccCCCHHHHHHHHHHhhcC-CC-CCCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccC
Q psy7461           1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKG-PL-DPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELS   78 (149)
Q Consensus         1 m~rk~~i~~NwKmn~~~~~~~~~~~~~~~~-~~-~~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS   78 (149)
                      |.|||+|+||||||++.+++.+|++.+... .. ..+++|++||||++|..+.+.++++|.+|||||++.++||||||||
T Consensus         1 ~~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS   80 (253)
T PLN02561          1 MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEIS   80 (253)
T ss_pred             CCCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCC
Confidence            789999999999999999999999998653 22 2469999999999999998876557999999999999999999999


Q ss_pred             HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461          79 PAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC  148 (149)
Q Consensus        79 ~~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~  148 (149)
                      ++||+|+||+||||||||||++|+|||+.|++|+++|+++||+|||||||++++|++|+|.+++.+|++.
T Consensus        81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~  150 (253)
T PLN02561         81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKA  150 (253)
T ss_pred             HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864

>PTZ00333 triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK14567 triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK15492 triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK00042 tpiA triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK14566 triosephosphate isomerase; Provisional Back     alignment and domain information
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02429 triosephosphate isomerase Back     alignment and domain information
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate Back     alignment and domain information
>PRK14565 triosephosphate isomerase; Provisional Back     alignment and domain information
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5 Back     alignment and domain information
>KOG1643|consensus Back     alignment and domain information
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional Back     alignment and domain information
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>TIGR00419 tim triosephosphate isomerase Back     alignment and domain information
>PRK04302 triosephosphate isomerase; Provisional Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PRK08057 cobalt-precorrin-6x reductase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
2i9e_A 259 Structure Of Triosephosphate Isomerase Of Tenebrio 1e-58
1mo0_A 275 Structural Genomics Of Caenorhabditis Elegans: Trio 1e-51
3th6_A249 Crystal Structure Of Triosephosphate Isomerase From 2e-50
1tpb_1247 Offset Of A Catalytic Lesion By A Bound Water Solub 4e-50
1sw7_A248 Triosephosphate Isomerase From Gallus Gallus, Loop 5e-50
1tph_1247 1.8 Angstroms Crystal Structure Of Wild Type Chicke 5e-50
1spq_A247 Understanding Protein Lids: Structural Analysis Of 5e-50
1sw3_A248 Triosephosphate Isomerase From Gallus Gallus, Loop 5e-50
1ssd_A247 Understanding Protein Lids: Structural Analysis Of 5e-50
1sw0_A248 Triosephosphate Isomerase From Gallus Gallus, Loop 6e-50
1sq7_A247 Understanding Protein Lids: Structural Analysis Of 7e-50
1su5_A247 Understanding Protein Lids: Structural Analysis Of 8e-50
1tpw_A247 Triosephosphate Isomerase Drinks Water To Keep Heal 3e-49
1tpc_1247 Offset Of A Catalytic Lesion By A Bound Water Solub 3e-49
1tpu_A247 S96p Change Is A Second-Site Suppressor For H95n Sl 4e-49
1tim_A247 Structure Of Triose Phosphate Isomerase From Chicke 4e-49
1tpv_A247 S96p Change Is A Second-Site Suppressor For H95n Sl 3e-48
1r2r_A248 Crystal Structure Of Rabbit Muscle Triosephosphate 3e-45
1hti_A248 Crystal Structure Of Recombinant Human Triosephosph 9e-45
1wyi_A250 Human Triosephosphate Isomerase Of New Crystal Form 1e-44
2vom_A250 Structural Basis Of Human Triosephosphate Isomerase 2e-44
1i45_A248 Yeast Triosephosphate Isomerase (Mutant) Length = 2 2e-33
1ypi_A247 Structure Of Yeast Triosephosphate Isomerase At 1.9 3e-33
4ff7_A248 Structure Of C126s Mutant Of Saccharomyces Cerevisi 5e-33
1nf0_A247 Triosephosphate Isomerase In Complex With Dhap Leng 1e-32
3ypi_A247 Electrophilic Catalysis In Triosephosphase Isomeras 3e-32
3qst_A 255 Crystal Structure Of Trichomonas Vaginalis Trioseph 2e-28
3qsr_A 255 Crystal Structure Of Trichomonas Vaginalis Trioseph 2e-28
2vfd_A248 Crystal Structure Of The F96s Mutant Of Plasmodium 4e-27
1m6j_A 261 Crystal Structure Of Triosephosphate Isomerase From 6e-27
1b9b_A 255 Triosephosphate Isomerase Of Thermotoga Maritima Le 6e-27
2vff_A248 Crystal Structure Of The F96h Mutant Of Plasmodium 1e-26
1vga_A248 Structures Of Unligated And Inhibitor Complexes Of 2e-26
1ydv_A248 Triosephosphate Isomerase (Tim) Length = 248 2e-26
2btm_A 252 Does The His12-Lys13 Pair Play A Role In The Adapta 4e-26
2oma_A250 Crystallographic Analysis Of A Chemically Modified 4e-26
2vfh_A248 Crystal Structure Of The F96w Mutant Of Plasmodium 5e-26
3psw_A248 Structure Of E97q Mutant Of Tim From Plasmodium Fal 5e-26
3psv_A248 Structure Of E97d Mutant Of Tim From Plasmodium Fal 5e-26
1ci1_A251 Crystal Structure Of Triosephosphate Isomerase From 6e-26
1tcd_A249 Trypanosoma Cruzi Triosephosphate Isomerase Length 7e-26
3krs_A271 Structure Of Triosephosphate Isomerase From Cryptos 7e-26
1qds_A251 Superstable E65q Mutant Of Leishmania Mexicana Trio 1e-25
1amk_A251 Leishmania Mexicana Triose Phosphate Isomerase Leng 2e-25
3pvf_A248 Structure Of C126s Mutant Of Plasmodium Falciparum 3e-25
3pwa_A248 Structure Of C126a Mutant Of Plasmodium Falciparum 3e-25
1btm_A 252 Triosephosphate Isomerase (Tim) Complexed With 2- P 1e-24
3uwu_A 261 Crystal Structure Of Staphylococcus Aureus Trioseph 1e-23
3m9y_A 254 Crystal Structure Of Triosephosphate Isomerase From 1e-23
3q37_A251 Identification Of Amino Acids That Account For Long 2e-23
1tre_A 255 The Structure Of Triosephosphate Isomerase From Esc 4e-23
1tmh_A 254 Modular Mutagenesis Of A Tim-barrel Enzyme: The Cry 5e-23
4iot_A 255 High-resolution Structure Of Triosephosphate Isomer 5e-23
3pf3_A 257 Crystal Structure Of A Mutant (C202a) Of Triosephos 6e-23
2j24_A250 The Functional Role Of The Conserved Active Site Pr 8e-23
2yc6_A 257 Crystal Structure Of A Triple Mutant (A198v, C202a 9e-23
2dp3_A 257 Crystal Structure Of A Double Mutant (C202aA198V) O 1e-22
2yc7_A 257 Crystal Structure Of A Mutant (C202a) Of Triosephos 1e-22
4tim_A250 Crystallographic And Molecular Modeling Studies On 1e-22
2v0t_A250 The A178l Mutation In The C-Terminal Hinge Of The F 1e-22
2yc8_A 255 Crystal Structure Of A Double Mutant (C202a And C22 1e-22
1kv5_A250 Structure Of Trypanosoma Brucei Brucei Tim With The 1e-22
3tim_A250 The Crystal Structure Of The "open" And The "closed 1e-22
1aw1_A 256 Triosephosphate Isomerase Of Vibrio Marinus Complex 1e-22
2v5b_A244 The Monomerization Of Triosephosphate Isomerase Fro 6e-21
1yya_A 250 Crystal Structure Of Tt0473, Putative Triosephospha 9e-20
3kxq_A275 Crystal Structure Of Triosephosphate Isomerase From 2e-19
1tri_A243 The Crystal Structure Of An Engineered Monomeric Tr 7e-18
4g1k_A272 Crystal Structure Of Triosephosphate Isomerase From 9e-18
1mss_A243 Large Scale Structural Rearrangements Of The Front 9e-18
1tti_A243 Three New Crystal Structures Of Point Mutation Vari 2e-17
2wsq_A242 Monotim Mutant Rmm0-1, Dimeric Form. Length = 242 2e-17
2wsr_A242 Monotim Mutant Rmm0-1, Monomeric Form Length = 242 1e-16
2y6z_A256 Crystallographic Structure Of Gm23 An Example Of Ca 2e-16
1ml1_A243 Protein Engineering With Monomeric Triosephosphate 3e-16
2y70_A245 Crystallographic Structure Of Gm23, Mutant G89d, An 3e-16
3ta6_A 267 Structure Of Mycobacterium Tuberculosis Triosephosp 1e-15
1dkw_A238 Crystal Structure Of Triose-Phosphate Isomerase Wit 4e-15
2v2d_A242 The A178l Mutation In The C-Terminal Hinge Of The F 4e-15
2vek_A238 Structure-Based Enzyme Engineering Efforts With An 4e-15
2vei_A238 Structure-Based Enzyme Engineering Efforts With An 4e-15
3gvg_A 283 Crystal Structure Of Triosephosphate Isomerase From 5e-15
3s6d_A 310 Crystal Structure Of A Putative Triosephosphate Iso 6e-11
2jgq_A233 Kinetics And Structural Properties Of Triosephospha 1e-10
>pdb|2I9E|A Chain A, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor Length = 259 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (563), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 122/145 (84%)
Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
           M+RKF VGGNWKMNG+KK+I  I+ FLK GPL+   EVVVGVPAIYLE  +  +P+++  
Sbjct: 1   MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDTEVVVGVPAIYLELVRTCVPASIGV 60
Query: 61  AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
           AAQNCYKVPKGAFTGE+SPAM+ DVG DWVILGHSERR +FGE D LIAEKV HALE+GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGL 120
Query: 121 NVVACIGEKLEEREAGQTEAVVYKQ 145
            V+ACIGE LEEREAG+TE VV++Q
Sbjct: 121 KVIACIGETLEEREAGKTEEVVFRQ 145
>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose Phosphate Isomerase Length = 275 Back     alignment and structure
>pdb|3TH6|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Rhipicephalus (Boophilus) Microplus. Length = 249 Back     alignment and structure
>pdb|1TPB|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble Length = 247 Back     alignment and structure
>pdb|1SW7|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Mutant K174n, T175s, A176s Length = 248 Back     alignment and structure
>pdb|1TPH|1 Chain 1, 1.8 Angstroms Crystal Structure Of Wild Type Chicken Triosephosphate Isomerase-Phosphoglycolohydroxamate Complex Length = 247 Back     alignment and structure
>pdb|1SPQ|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1SW3|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Mutant T175v Length = 248 Back     alignment and structure
>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1SW0|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Hinge Mutant K174l, T175w Length = 248 Back     alignment and structure
>pdb|1SQ7|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1SU5|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1TPW|A Chain A, Triosephosphate Isomerase Drinks Water To Keep Healthy Length = 247 Back     alignment and structure
>pdb|1TPC|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble Length = 247 Back     alignment and structure
>pdb|1TPU|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish Mutant Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1TIM|A Chain A, Structure Of Triose Phosphate Isomerase From Chicken Muscle Length = 247 Back     alignment and structure
>pdb|1TPV|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish Mutant Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1R2R|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|1HTI|A Chain A, Crystal Structure Of Recombinant Human Triosephosphate Isomerase At 2.8 Angstroms Resolution. Triosephosphate Isomerase Related Human Genetic Disorders And Comparison With The Trypanosomal Enzyme Length = 248 Back     alignment and structure
>pdb|1WYI|A Chain A, Human Triosephosphate Isomerase Of New Crystal Form Length = 250 Back     alignment and structure
>pdb|2VOM|A Chain A, Structural Basis Of Human Triosephosphate Isomerase Deficiency. Mutation E104d And Correlation To Solvent Perturbation. Length = 250 Back     alignment and structure
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant) Length = 248 Back     alignment and structure
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9- Angstroms Resolution Length = 247 Back     alignment and structure
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap Length = 247 Back     alignment and structure
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The Role Of Histidine-95 Length = 247 Back     alignment and structure
>pdb|3QST|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate Isomerase Tvag_096350 Gene (Val-45 Variant) Length = 255 Back     alignment and structure
>pdb|3QSR|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate Isomerase Tvag_497370 Gene (Ile-45 Variant) Length = 255 Back     alignment and structure
>pdb|2VFD|A Chain A, Crystal Structure Of The F96s Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Entamoeba Histolytica Length = 261 Back     alignment and structure
>pdb|1B9B|A Chain A, Triosephosphate Isomerase Of Thermotoga Maritima Length = 255 Back     alignment and structure
>pdb|2VFF|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|1VGA|A Chain A, Structures Of Unligated And Inhibitor Complexes Of W168f Mutant Of Triosephosphate Isomerase From Plasmodium Falciparum Length = 248 Back     alignment and structure
>pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim) Length = 248 Back     alignment and structure
>pdb|2BTM|A Chain A, Does The His12-Lys13 Pair Play A Role In The Adaptation Of Thermophilic Tims To High Temperatures? Length = 252 Back     alignment and structure
>pdb|2OMA|A Chain A, Crystallographic Analysis Of A Chemically Modified Triosephosphate Isomerase From Trypanosoma Cruzi With Dithiobenzylamine (dtba) Length = 250 Back     alignment and structure
>pdb|2VFH|A Chain A, Crystal Structure Of The F96w Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Complexed With 3- Phosphoglycerate Length = 248 Back     alignment and structure
>pdb|3PSW|A Chain A, Structure Of E97q Mutant Of Tim From Plasmodium Falciparum Length = 248 Back     alignment and structure
>pdb|3PSV|A Chain A, Structure Of E97d Mutant Of Tim From Plasmodium Falciparum Length = 248 Back     alignment and structure
>pdb|1CI1|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Trypanosoma Cruzi In Hexane Length = 251 Back     alignment and structure
>pdb|1TCD|A Chain A, Trypanosoma Cruzi Triosephosphate Isomerase Length = 249 Back     alignment and structure
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From Cryptosporidium Parvum At 1.55a Resolution Length = 271 Back     alignment and structure
>pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania Mexicana Triosephosphate Isomerase (Tim) Length = 251 Back     alignment and structure
>pdb|1AMK|A Chain A, Leishmania Mexicana Triose Phosphate Isomerase Length = 251 Back     alignment and structure
>pdb|3PVF|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Complexed With Pga Length = 248 Back     alignment and structure
>pdb|3PWA|A Chain A, Structure Of C126a Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|1BTM|A Chain A, Triosephosphate Isomerase (Tim) Complexed With 2- Phosphoglycolic Acid Length = 252 Back     alignment and structure
>pdb|3UWU|A Chain A, Crystal Structure Of Staphylococcus Aureus Triosephosphate Isomerase Complexed With Glycerol-3-Phosphate Length = 261 Back     alignment and structure
>pdb|3M9Y|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Methicillin Resistant Staphylococcus Aureus At 1.9 Angstrom Resolution Length = 254 Back     alignment and structure
>pdb|3Q37|A Chain A, Identification Of Amino Acids That Account For Long-Range Interactions In Proteins Using Two Triosephosphate Isomerases From Pathogenic Trypanosomes. Length = 251 Back     alignment and structure
>pdb|1TRE|A Chain A, The Structure Of Triosephosphate Isomerase From Escherichia Coli Determined At 2.6 Angstrom Resolution Length = 255 Back     alignment and structure
>pdb|1TMH|A Chain A, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal Structure Of A Chimeric E. Coli Tim Having The Eighth (beta-alpha)-unit Replaced By The Equivalent Unit Of Chicken Tim Length = 254 Back     alignment and structure
>pdb|4IOT|A Chain A, High-resolution Structure Of Triosephosphate Isomerase From E. Coli Length = 255 Back     alignment and structure
>pdb|3PF3|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate Isomerase From Giardia Lamblia Derivatized With Mmts Length = 257 Back     alignment and structure
>pdb|2J24|A Chain A, The Functional Role Of The Conserved Active Site Proline Of Triosephosphate Isomerase Length = 250 Back     alignment and structure
>pdb|2YC6|A Chain A, Crystal Structure Of A Triple Mutant (A198v, C202a And C222n) Of Triosephosphate Isomerase From Giardia Lamblia Complexed With 2-Phosphoglycolic Acid Length = 257 Back     alignment and structure
>pdb|2DP3|A Chain A, Crystal Structure Of A Double Mutant (C202aA198V) OF TRIOSEPHOSPHATE Isomerase From Giardia Lamblia Length = 257 Back     alignment and structure
>pdb|2YC7|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate Isomerase From Giardia Lamblia Complexed With 2-Phosphoglycolic Acid Length = 257 Back     alignment and structure
>pdb|4TIM|A Chain A, Crystallographic And Molecular Modeling Studies On Trypanosomal Triosephosphate Isomerase: A Critical Assessment Of The Predicted And Observed Structures Of The Complex With 2-Phosphoglycerate Length = 250 Back     alignment and structure
>pdb|2V0T|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More Closed Conformation Of This Hinge Region In Dimeric And Monomeric Tim Length = 250 Back     alignment and structure
>pdb|2YC8|A Chain A, Crystal Structure Of A Double Mutant (C202a And C222n) Of Triosephosphate Isomerase From Giardia Lamblia. Length = 255 Back     alignment and structure
>pdb|1KV5|A Chain A, Structure Of Trypanosoma Brucei Brucei Tim With The Salt-Bridge- Forming Residue Arg191 Mutated To Ser Length = 250 Back     alignment and structure
>pdb|3TIM|A Chain A, The Crystal Structure Of The "open" And The "closed" Conformation Of The Flexible Loop Of Trypanosomal Triosephosphate Isomerase Length = 250 Back     alignment and structure
>pdb|1AW1|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus Complexed With 2-Phosphoglycolate Length = 256 Back     alignment and structure
>pdb|2V5B|A Chain A, The Monomerization Of Triosephosphate Isomerase From Trypanosoma Cruzi Length = 244 Back     alignment and structure
>pdb|1YYA|A Chain A, Crystal Structure Of Tt0473, Putative Triosephosphate Isomerase From Thermus Thermophilus Hb8 Length = 250 Back     alignment and structure
>pdb|3KXQ|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Bartonella Henselae At 1.6a Resolution Length = 275 Back     alignment and structure
>pdb|1TRI|A Chain A, The Crystal Structure Of An Engineered Monomeric Triosephosphate Isomerase, Monotim: The Correct Modelling Of An Eight-Residue Loop Length = 243 Back     alignment and structure
>pdb|4G1K|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Burkholderia Thailandensis Length = 272 Back     alignment and structure
>pdb|1MSS|A Chain A, Large Scale Structural Rearrangements Of The Front Loops In Monomerised Triosephosphate Isomerase, As Deduced From The Comparison Of The Structural Properties Of Monotim And Its Point Mutation Variant Monoss Length = 243 Back     alignment and structure
>pdb|1TTI|A Chain A, Three New Crystal Structures Of Point Mutation Variants Of Monotim: Conformational Flexibility Of Loop-1,Loop-4 And Loop-8 Length = 243 Back     alignment and structure
>pdb|2WSQ|A Chain A, Monotim Mutant Rmm0-1, Dimeric Form. Length = 242 Back     alignment and structure
>pdb|2WSR|A Chain A, Monotim Mutant Rmm0-1, Monomeric Form Length = 242 Back     alignment and structure
>pdb|2Y6Z|A Chain A, Crystallographic Structure Of Gm23 An Example Of Catalytic Migration From Tim To Thiamin Phosphate Synthase Length = 256 Back     alignment and structure
>pdb|1ML1|A Chain A, Protein Engineering With Monomeric Triosephosphate Isomerase: The Modelling And Structure Verification Of A Seven Residue Loop Length = 243 Back     alignment and structure
>pdb|2Y70|A Chain A, Crystallographic Structure Of Gm23, Mutant G89d, An Example Of Catalytic Migration From Tim To Thiamin Phosphate Synthase. Length = 245 Back     alignment and structure
>pdb|3TA6|A Chain A, Structure Of Mycobacterium Tuberculosis Triosephosphate Isomerase Length = 267 Back     alignment and structure
>pdb|1DKW|A Chain A, Crystal Structure Of Triose-Phosphate Isomerase With Modified Substrate Binding Site Length = 238 Back     alignment and structure
>pdb|2V2D|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More Closed Conformation Of This Hinge Region In Dimeric And Monomeric Tim Length = 242 Back     alignment and structure
>pdb|2VEK|A Chain A, Structure-Based Enzyme Engineering Efforts With An Inactive Monomeric Tim Variant: The Importance Of A Single Point Mutation For Generating An Active Site With Suitable Binding Properties Length = 238 Back     alignment and structure
>pdb|2VEI|A Chain A, Structure-Based Enzyme Engineering Efforts With An Inactive Monomeric Tim Variant: The Importance Of A Single Point Mutation For Generating An Active Site With Suitable Binding Properties Length = 238 Back     alignment and structure
>pdb|3GVG|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Mycobacterium Tuberculosis Length = 283 Back     alignment and structure
>pdb|3S6D|A Chain A, Crystal Structure Of A Putative Triosephosphate Isomerase From Coccidioides Immitis Length = 310 Back     alignment and structure
>pdb|2JGQ|A Chain A, Kinetics And Structural Properties Of Triosephosphate Isomerase From Helicobacter Pylori Length = 233 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
2i9e_A 259 Triosephosphate isomerase; 2.00A {Tenebrio molitor 2e-86
1mo0_A 275 TIM, triosephosphate isomerase; structural genomic 3e-85
1r2r_A248 TIM, triosephosphate isomerase; closed loop confor 2e-84
3th6_A249 Triosephosphate isomerase; alpha/beta barrel, embr 2e-84
1o5x_A248 TIM, triosephosphate isomerase; 2- phosphoglycerat 2e-82
1ney_A247 TIM, triosephosphate isomerase; yeast, DHAP, dihyd 5e-82
2yc6_A 257 Triosephosphate isomerase; glycolysis; HET: PGA; 1 2e-81
3qst_A 255 Triosephosphate isomerase, putative; TIM barrel; 1 2e-80
2vxn_A251 Triosephosphate isomerase; fatty acid biosynthesis 2e-80
3krs_A271 Triosephosphate isomerase; ssgcid, SBRI, emerald b 2e-79
2j27_A250 Triosephosphate isomerase glycosomal; TIM, 2PG, LO 1e-78
1m6j_A 261 TIM, TPI, triosephosphate isomerase; asymmetry, mo 8e-76
1tre_A 255 Triosephosphate isomerase; intramolecular oxidored 7e-73
1b9b_A 255 TIM, protein (triosephosphate isomerase); thermoph 1e-72
2v5b_A244 Triosephosphate isomerase; TIM, unfolding, monotct 8e-72
3m9y_A 254 Triosephosphate isomerase; TIM barrel, glycolysis, 1e-70
1aw2_A 256 Triosephosphate isomerase; psychrophilic, vibrio m 9e-68
3kxq_A275 Triosephosphate isomerase; ssgcid, NIH, niaid, SBR 7e-66
1yya_A 250 Triosephosphate isomerase; riken structural genomi 3e-64
2jgq_A233 Triosephosphate isomerase; glycolysis, pentose shu 3e-64
3ta6_A 267 Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba 1e-63
2btm_A 252 TIM, protein (triosephosphate isomerase); thermoph 1e-63
4g1k_A272 Triosephosphate isomerase; structural genomics, se 1e-62
3s6d_A 310 Putative triosephosphate isomerase; seattle struct 2e-57
1w0m_A226 TIM, triosephosphate isomerase; glycolysis, glucon 1e-51
2h6r_A219 Triosephosphate isomerase; beta-alpha barrel; 2.30 2e-45
1hg3_A225 Triosephosphate isomerase; thermostability, tetram 1e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} Length = 259 Back     alignment and structure
 Score =  252 bits (645), Expect = 2e-86
 Identities = 104/146 (71%), Positives = 122/146 (83%)

Query: 1   MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAP 60
           M+RKF VGGNWKMNG+KK+I  I+ FLK GPL+   EVVVGVPAIYLE  +  +P+++  
Sbjct: 1   MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDTEVVVGVPAIYLELVRTCVPASIGV 60

Query: 61  AAQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGL 120
           AAQNCYKVPKGAFTGE+SPAM+ DVG DWVILGHSERR +FGE D LIAEKV HALE+GL
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGL 120

Query: 121 NVVACIGEKLEEREAGQTEAVVYKQI 146
            V+ACIGE LEEREAG+TE VV++Q 
Sbjct: 121 KVIACIGETLEEREAGKTEEVVFRQT 146
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 Length = 275 Back     alignment and structure
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... Length = 248 Back     alignment and structure
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} Length = 249 Back     alignment and structure
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* Length = 248 Back     alignment and structure
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* Length = 247 Back     alignment and structure
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A Length = 257 Back     alignment and structure
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A Length = 255 Back     alignment and structure
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* Length = 251 Back     alignment and structure
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} Length = 271 Back     alignment and structure
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... Length = 250 Back     alignment and structure
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 Length = 261 Back     alignment and structure
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A Length = 255 Back     alignment and structure
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 Length = 255 Back     alignment and structure
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} Length = 244 Back     alignment and structure
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} Length = 254 Back     alignment and structure
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A Length = 256 Back     alignment and structure
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} Length = 275 Back     alignment and structure
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} Length = 250 Back     alignment and structure
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} Length = 233 Back     alignment and structure
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} PDB: 3tao_A* 3gvg_A Length = 267 Back     alignment and structure
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Length = 252 Back     alignment and structure
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} Length = 272 Back     alignment and structure
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS} Length = 310 Back     alignment and structure
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Length = 226 Back     alignment and structure
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} Length = 219 Back     alignment and structure
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Length = 225 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
1o5x_A248 TIM, triosephosphate isomerase; 2- phosphoglycerat 100.0
3th6_A249 Triosephosphate isomerase; alpha/beta barrel, embr 100.0
1r2r_A248 TIM, triosephosphate isomerase; closed loop confor 100.0
2i9e_A 259 Triosephosphate isomerase; 2.00A {Tenebrio molitor 100.0
3qst_A 255 Triosephosphate isomerase, putative; TIM barrel; 1 100.0
1b9b_A 255 TIM, protein (triosephosphate isomerase); thermoph 100.0
4g1k_A272 Triosephosphate isomerase; structural genomics, se 100.0
3ta6_A 267 Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba 100.0
3krs_A271 Triosephosphate isomerase; ssgcid, SBRI, emerald b 100.0
1ney_A247 TIM, triosephosphate isomerase; yeast, DHAP, dihyd 100.0
2vxn_A251 Triosephosphate isomerase; fatty acid biosynthesis 100.0
2yc6_A 257 Triosephosphate isomerase; glycolysis; HET: PGA; 1 100.0
3kxq_A275 Triosephosphate isomerase; ssgcid, NIH, niaid, SBR 100.0
2j27_A250 Triosephosphate isomerase glycosomal; TIM, 2PG, LO 100.0
3m9y_A 254 Triosephosphate isomerase; TIM barrel, glycolysis, 100.0
1mo0_A 275 TIM, triosephosphate isomerase; structural genomic 100.0
1tre_A 255 Triosephosphate isomerase; intramolecular oxidored 100.0
1yya_A 250 Triosephosphate isomerase; riken structural genomi 100.0
1aw2_A 256 Triosephosphate isomerase; psychrophilic, vibrio m 100.0
1m6j_A 261 TIM, TPI, triosephosphate isomerase; asymmetry, mo 100.0
2btm_A 252 TIM, protein (triosephosphate isomerase); thermoph 100.0
2jgq_A233 Triosephosphate isomerase; glycolysis, pentose shu 100.0
3s6d_A 310 Putative triosephosphate isomerase; seattle struct 100.0
2v5b_A244 Triosephosphate isomerase; TIM, unfolding, monotct 100.0
1hg3_A225 Triosephosphate isomerase; thermostability, tetram 100.0
1w0m_A226 TIM, triosephosphate isomerase; glycolysis, glucon 100.0
2h6r_A219 Triosephosphate isomerase; beta-alpha barrel; 2.30 100.0
2p10_A286 MLL9387 protein; putative phosphonopyruvate hydrol 98.2
1i4n_A251 Indole-3-glycerol phosphate synthase; thermostable 95.59
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 89.68
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 85.75
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 82.15
1geq_A248 Tryptophan synthase alpha-subunit; hyperthermophIl 80.17
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* Back     alignment and structure
Probab=100.00  E-value=5.3e-62  Score=395.56  Aligned_cols=148  Identities=36%  Similarity=0.609  Sum_probs=138.7

Q ss_pred             CCCccEEEEecccCCCHHHHHHHHHHhhcCCCC-CCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCH
Q psy7461           1 MSRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLD-PKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSP   79 (149)
Q Consensus         1 m~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~-~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~   79 (149)
                      |||||+|++|||||++.+++.+|++.+...... .+++|+|||||++|..+.+.+.+++.+||||||+.++|||||||||
T Consensus         1 mmr~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~~~~vev~v~Pp~~~L~~v~~~~~~~i~vgAQn~~~~~~GA~TGEiS~   80 (248)
T 1o5x_A            1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSA   80 (248)
T ss_dssp             --CCEEEEEECCBCCCHHHHHHHHHHHHTSCCCTTTEEEEEECCGGGHHHHHHHSCTTSEEEESCCCSSCSBSCTTCCCH
T ss_pred             CCCCCEEEEecCcccCHHHHHHHHHHHHhhcccccCceEEEeCcHHHHHHHHHHhccCCeEEeccCCCCCCCCcCCcCCH
Confidence            899999999999999999999999999763333 4699999999999999988876679999999999999999999999


Q ss_pred             HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461          80 AMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC  148 (149)
Q Consensus        80 ~mLkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~  148 (149)
                      +||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+||.+||+.
T Consensus        81 ~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~  149 (248)
T 1o5x_A           81 EIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKA  149 (248)
T ss_dssp             HHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHcCCCEEEeCChhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCChHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999975
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} Back     alignment and structure
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... Back     alignment and structure
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} Back     alignment and structure
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A Back     alignment and structure
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 Back     alignment and structure
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A Back     alignment and structure
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* Back     alignment and structure
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* Back     alignment and structure
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A Back     alignment and structure
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} Back     alignment and structure
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... Back     alignment and structure
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A* Back     alignment and structure
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 Back     alignment and structure
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A Back     alignment and structure
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} Back     alignment and structure
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A Back     alignment and structure
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 Back     alignment and structure
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Back     alignment and structure
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} Back     alignment and structure
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS} Back     alignment and structure
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Back     alignment and structure
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Back     alignment and structure
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 Back     alignment and structure
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 149
d1r2ra_246 c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Or 5e-37
d1mo0a_257 c.1.1.1 (A:) Triosephosphate isomerase {Nematode ( 1e-34
d1b9ba_ 252 c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga 2e-33
d1neya_247 c.1.1.1 (A:) Triosephosphate isomerase {Baker's ye 6e-31
d1m6ja_ 260 c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba 3e-28
d1trea_ 255 c.1.1.1 (A:) Triosephosphate isomerase {Escherichi 3e-28
d1o5xa_246 c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium 4e-28
d1n55a_249 c.1.1.1 (A:) Triosephosphate isomerase {Leishmania 1e-27
d1aw1a_ 255 c.1.1.1 (A:) Triosephosphate isomerase {Vibrio mar 2e-26
d1kv5a_249 c.1.1.1 (A:) Triosephosphate isomerase {Trypanosom 3e-26
d2btma_ 251 c.1.1.1 (A:) Triosephosphate isomerase {Bacillus s 4e-26
d1w0ma_226 c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot 3e-16
d1hg3a_224 c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P 4e-14
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 246 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  124 bits (313), Expect = 5e-37
 Identities = 85/148 (57%), Positives = 105/148 (70%)

Query: 2   SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPA 61
           SRKF+VGGNWKMNG KK +  ++  L    +    EVV   P  Y+++A+  L   +A A
Sbjct: 1   SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 60

Query: 62  AQNCYKVPKGAFTGELSPAMLVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLN 121
           AQNCYKV  GAFTGE+SP M+ D G  WV+LGHSERR+VFGE D LI +KVAHAL  GL 
Sbjct: 61  AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 120

Query: 122 VVACIGEKLEEREAGQTEAVVYKQICCV 149
           V+ACIGEKL+EREAG TE VV++Q   +
Sbjct: 121 VIACIGEKLDEREAGITEKVVFEQTKVI 148
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 257 Back     information, alignment and structure
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} Length = 252 Back     information, alignment and structure
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 247 Back     information, alignment and structure
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} Length = 260 Back     information, alignment and structure
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} Length = 255 Back     information, alignment and structure
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} Length = 246 Back     information, alignment and structure
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} Length = 249 Back     information, alignment and structure
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} Length = 255 Back     information, alignment and structure
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} Length = 249 Back     information, alignment and structure
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} Length = 251 Back     information, alignment and structure
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226 Back     information, alignment and structure
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
d1r2ra_246 Triosephosphate isomerase {Rabbit (Oryctolagus cun 100.0
d1neya_247 Triosephosphate isomerase {Baker's yeast (Saccharo 100.0
d1mo0a_257 Triosephosphate isomerase {Nematode (Caenorhabditi 100.0
d1b9ba_ 252 Triosephosphate isomerase {Thermotoga maritima [Ta 100.0
d1trea_ 255 Triosephosphate isomerase {Escherichia coli [TaxId 100.0
d1aw1a_ 255 Triosephosphate isomerase {Vibrio marinus [TaxId: 100.0
d1o5xa_246 Triosephosphate isomerase {Plasmodium falciparum [ 100.0
d2btma_ 251 Triosephosphate isomerase {Bacillus stearothermoph 100.0
d1n55a_249 Triosephosphate isomerase {Leishmania mexicana [Ta 100.0
d1kv5a_249 Triosephosphate isomerase {Trypanosoma brucei [Tax 100.0
d1m6ja_ 260 Triosephosphate isomerase {Entamoeba histolytica [ 100.0
d1hg3a_224 Triosephosphate isomerase {Archaeon Pyrococcus woe 100.0
d1w0ma_226 Triosephosphate isomerase {Thermoproteus tenax [Ta 100.0
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=4.5e-60  Score=382.05  Aligned_cols=147  Identities=58%  Similarity=0.986  Sum_probs=139.3

Q ss_pred             CCccEEEEecccCCCHHHHHHHHHHhhcCCCCCCeEEEEecchhhHHHHhhhCCCCeeeeecccccCCCCCcccccCHHH
Q psy7461           2 SRKFWVGGNWKMNGNKKEIEGIVDFLKKGPLDPKVEVVVGVPAIYLEYAKCLLPSNVAPAAQNCYKVPKGAFTGELSPAM   81 (149)
Q Consensus         2 ~rk~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~~v~i~P~~~~L~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~m   81 (149)
                      +|||+|+||||||++..++.+|++.+.....+.+++|++|||+++|..+.....+++.+||||||+.+.||||||||+.|
T Consensus         1 SrK~~IagNWKMN~~~~~~~~~~~~l~~~~~~~~~~vii~Pp~~~l~~~~~~~~s~I~iGAQn~~~~~~GA~TGeiSa~m   80 (246)
T d1r2ra_           1 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGM   80 (246)
T ss_dssp             CCCEEEEEECCBCCCHHHHHHHHHHHHHSCCCTTEEEEEECCGGGHHHHHHHSCTTSEEEESCCCSSSSBSCTTCCCHHH
T ss_pred             CCCeEEEEecccCCCHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHHHHHhccCCcceeceeeeeeccccccccccHHH
Confidence            59999999999999999999999999776555679999999999999887776778999999999999999999999999


Q ss_pred             HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHhhhc
Q psy7461          82 LVDVGIDWVILGHSERRNVFGEPDSLIAEKVAHALETGLNVVACIGEKLEEREAGQTEAVVYKQICC  148 (149)
Q Consensus        82 Lkd~G~~~viiGHSERR~~~~Etd~~i~~Kv~~al~~gl~pIlCiGE~~e~r~~g~~~~v~~~Ql~~  148 (149)
                      |+|+||+||||||||||++|+|||+.|++|+++|+++||+|||||||++++|++|+|.+++.+||+.
T Consensus        81 L~d~G~~~viiGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEt~~er~~g~t~~~l~~Ql~~  147 (246)
T d1r2ra_          81 IKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKV  147 (246)
T ss_dssp             HHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhcchhhhhhcCCCHHHHHHHHHHhhccCceEEEEecCccccccccchhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999863
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} Back     information, alignment and structure
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} Back     information, alignment and structure
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Back     information, alignment and structure