Psyllid ID: psy746

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE
ccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHccccccHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccc
ccccccccccccHHHHHcccHHHcccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccHHcHHHHHHHHcccccccccHHHHHHccccccccHHHHHHHccHHHHHHHHHHHcccccccEEEccccccccccccccHHHHHHHHHHHHHHHccccEEEEcccccccccc
miaksgkaaqIDMVTWMHRPSIVQGYLDHLLegqqtqfiqpfeDWWEdfninnklktnhppfqydphgddltaigiqrqrdygmpgynefrkyaglkpvksfeelsdvigpeniHLLKLGYkhvddidlfvggylenplhdslfgptfTYVIADQfyrwkfgdrfwfsvlgkpwsfte
miaksgkaaqidmVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE
MIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE
*********QIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWS***
*******A**IDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPW*FT*
********AQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE
*I**SGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLG*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIAKSGKAAQIDMVTWMHRPSIVQGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query178 2.2.26 [Sep-21-2011]
Q01603690 Peroxidase OS=Drosophila no N/A 0.870 0.224 0.381 5e-22
Q7QH73767 Chorion peroxidase OS=Ano no N/A 0.556 0.129 0.447 7e-20
B3A0Q8294 Peroxidase-like protein 2 N/A N/A 0.578 0.350 0.440 3e-18
Q6TMK4531 Peroxinectin A OS=Dictyos yes N/A 0.561 0.188 0.421 5e-18
Q23490724 Peroxidase mlt-7 OS=Caeno no N/A 0.550 0.135 0.404 1e-17
Q1ENI8 1285 Peroxidasin homolog OS=Ca no N/A 0.550 0.076 0.414 3e-16
Q9VZZ4 1527 Peroxidasin OS=Drosophila no N/A 0.550 0.064 0.414 4e-16
P09933 926 Thyroid peroxidase OS=Sus yes N/A 0.595 0.114 0.390 5e-16
A8WQH2 1288 Peroxidasin homolog OS=Ca N/A N/A 0.550 0.076 0.404 5e-16
Q9VEG6809 Chorion peroxidase OS=Dro no N/A 0.556 0.122 0.427 8e-16
>sp|Q01603|PERO_DROME Peroxidase OS=Drosophila melanogaster GN=Pxd PE=2 SV=2 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 10/165 (6%)

Query: 16  WMHRPSIVQ--GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYD-PHGDDLT 72
           W +RP I++     D L  G  TQ   P E    D N + ++K  H  F+ + P G DL 
Sbjct: 462 WFNRPGIIEVGDNFDSLTRGHATQ---PEE--LTDINFDRQIK--HFLFRRNMPFGSDLR 514

Query: 73  AIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVG 132
           ++ IQR RD+G+  YN+ R++ GL+   S+E   D+I P  +  LK  Y   +D+DL VG
Sbjct: 515 SLDIQRNRDHGLASYNDMREFCGLRRAHSWEGYGDLISPPILEKLKSLYPSHEDVDLTVG 574

Query: 133 GYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 177
             LE  +  +L GPTF  ++ +QFYR + GDRF+F    K   FT
Sbjct: 575 ASLEAHVAGALAGPTFLCILTEQFYRTRVGDRFFFENGDKLTGFT 619
Involved in the chorion hardening process, through protein cross-linking mediated by the formation of di- and tri-tyrosine bonds.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q7QH73|PERC_ANOGA Chorion peroxidase OS=Anopheles gambiae GN=pxt PE=2 SV=3 Back     alignment and function description
>sp|B3A0Q8|PLSP2_LOTGI Peroxidase-like protein 2 (Fragment) OS=Lottia gigantea PE=1 SV=1 Back     alignment and function description
>sp|Q6TMK4|POXA_DICDI Peroxinectin A OS=Dictyostelium discoideum GN=poxA PE=2 SV=1 Back     alignment and function description
>sp|Q23490|MLT7_CAEEL Peroxidase mlt-7 OS=Caenorhabditis elegans GN=mlt-7 PE=1 SV=1 Back     alignment and function description
>sp|Q1ENI8|PXDN_CAEEL Peroxidasin homolog OS=Caenorhabditis elegans GN=pxn-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9VZZ4|PXDN_DROME Peroxidasin OS=Drosophila melanogaster GN=Pxn PE=1 SV=1 Back     alignment and function description
>sp|P09933|PERT_PIG Thyroid peroxidase OS=Sus scrofa GN=TPO PE=1 SV=1 Back     alignment and function description
>sp|A8WQH2|PXDN_CAEBR Peroxidasin homolog OS=Caenorhabditis briggsae GN=pxn-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9VEG6|PERC_DROME Chorion peroxidase OS=Drosophila melanogaster GN=Pxt PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query178
321475620 600 hypothetical protein DAPPUDRAFT_44651 [D 0.837 0.248 0.402 6e-25
1150532 818 peroxinectin [Pacifastacus leniusculus] 0.971 0.211 0.377 1e-24
383856435 799 PREDICTED: peroxidase-like [Megachile ro 0.910 0.202 0.384 1e-24
321475618 963 hypothetical protein DAPPUDRAFT_312923 [ 0.837 0.154 0.409 1e-24
321469410 717 hypothetical protein DAPPUDRAFT_318553 [ 0.831 0.206 0.428 2e-24
390352286 686 PREDICTED: lactoperoxidase-like [Strongy 0.769 0.199 0.406 4e-24
158289807 687 AGAP010734-PA [Anopheles gambiae str. PE 0.870 0.225 0.406 4e-24
321461501 564 hypothetical protein DAPPUDRAFT_308194 [ 0.820 0.258 0.403 6e-24
295293391 774 peroxinectin [Eriocheir sinensis] 0.971 0.223 0.366 9e-24
283046732 743 peroxidase precursor [Tribolium castaneu 0.853 0.204 0.403 1e-23
>gi|321475620|gb|EFX86582.1| hypothetical protein DAPPUDRAFT_44651 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 5/154 (3%)

Query: 25  GYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGM 84
           G L+  L G  TQ  Q F++++     N+  +     F     G DL ++ IQR RD+G+
Sbjct: 417 GNLEKFLIGLATQPGQDFDNYFSKEVTNHLFEEEGKGF-----GLDLVSLNIQRGRDHGL 471

Query: 85  PGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLF 144
           PGYN++R   G+   K F +L D+I P  +   +L Y  VDDIDL++GG  E+    +L 
Sbjct: 472 PGYNDYRALCGIPRAKKFSDLLDLISPAIVERFELLYDSVDDIDLYIGGVSEDKAEGALI 531

Query: 145 GPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
           GPTF  ++ADQF R K GDR+++ + G+P SFTE
Sbjct: 532 GPTFQCIVADQFLRLKRGDRYFYDLGGQPGSFTE 565

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|1150532|emb|CAA62752.1| peroxinectin [Pacifastacus leniusculus] Back     alignment and taxonomy information
>gi|383856435|ref|XP_003703714.1| PREDICTED: peroxidase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|321475618|gb|EFX86580.1| hypothetical protein DAPPUDRAFT_312923 [Daphnia pulex] Back     alignment and taxonomy information
>gi|321469410|gb|EFX80390.1| hypothetical protein DAPPUDRAFT_318553 [Daphnia pulex] Back     alignment and taxonomy information
>gi|390352286|ref|XP_785104.3| PREDICTED: lactoperoxidase-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|158289807|ref|XP_311448.4| AGAP010734-PA [Anopheles gambiae str. PEST] gi|157018505|gb|EAA07042.4| AGAP010734-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|321461501|gb|EFX72532.1| hypothetical protein DAPPUDRAFT_308194 [Daphnia pulex] Back     alignment and taxonomy information
>gi|295293391|gb|ADF87945.1| peroxinectin [Eriocheir sinensis] Back     alignment and taxonomy information
>gi|283046732|ref|NP_001164313.1| peroxidase precursor [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query178
FB|FBgn0004577690 Pxd "Peroxidase" [Drosophila m 0.870 0.224 0.387 7.8e-22
FB|FBgn0259233 1615 CG42331 [Drosophila melanogast 0.831 0.091 0.405 6.1e-21
WB|WBGene00015841729 C16C8.2 [Caenorhabditis elegan 0.550 0.134 0.505 3.6e-20
WB|WBGene00016700 1537 C46A5.4 [Caenorhabditis elegan 0.617 0.071 0.445 9.9e-19
FB|FBgn0038469623 CG4009 [Drosophila melanogaste 0.758 0.216 0.385 1.8e-18
FB|FBgn0038511753 CG5873 [Drosophila melanogaste 0.808 0.191 0.375 2e-18
DICTYBASE|DDB_G0277275531 poxA "animal heme peroxidase f 0.550 0.184 0.43 7.2e-18
WB|WBGene00009897655 F49E12.1 [Caenorhabditis elega 0.578 0.157 0.418 6.3e-17
FB|FBgn0032685 1394 CG10211 [Drosophila melanogast 0.842 0.107 0.350 7.2e-17
RGD|1311882715 Epx "eosinophil peroxidase" [R 0.578 0.144 0.396 2.8e-16
FB|FBgn0004577 Pxd "Peroxidase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 264 (98.0 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 64/165 (38%), Positives = 92/165 (55%)

Query:    16 WMHRPSIVQ-G-YLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYD-PHGDDLT 72
             W +RP I++ G   D L  G  TQ   P E    D N + ++K  H  F+ + P G DL 
Sbjct:   462 WFNRPGIIEVGDNFDSLTRGHATQ---PEE--LTDINFDRQIK--HFLFRRNMPFGSDLR 514

Query:    73 AIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVG 132
             ++ IQR RD+G+  YN+ R++ GL+   S+E   D+I P  +  LK  Y   +D+DL VG
Sbjct:   515 SLDIQRNRDHGLASYNDMREFCGLRRAHSWEGYGDLISPPILEKLKSLYPSHEDVDLTVG 574

Query:   133 GYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 177
               LE  +  +L GPTF  ++ +QFYR + GDRF+F    K   FT
Sbjct:   575 ASLEAHVAGALAGPTFLCILTEQFYRTRVGDRFFFENGDKLTGFT 619
GO:0004601 "peroxidase activity" evidence=ISS;NAS
GO:0005506 "iron ion binding" evidence=NAS
GO:0005576 "extracellular region" evidence=NAS
GO:0020037 "heme binding" evidence=IEA;NAS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0007306 "eggshell chorion assembly" evidence=NAS
GO:0042600 "chorion" evidence=IDA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0022008 "neurogenesis" evidence=IMP
FB|FBgn0259233 CG42331 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00015841 C16C8.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00016700 C46A5.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0038469 CG4009 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0038511 CG5873 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277275 poxA "animal heme peroxidase family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00009897 F49E12.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0032685 CG10211 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1311882 Epx "eosinophil peroxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.11.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query178
cd09823378 cd09823, peroxinectin_like, peroxinectin_like anim 1e-49
pfam03098521 pfam03098, An_peroxidase, Animal haem peroxidase 4e-43
cd09826440 cd09826, peroxidasin_like, Animal heme peroxidase 8e-34
cd09822420 cd09822, peroxinectin_like_bacterial, Uncharacteri 2e-32
cd09820558 cd09820, dual_peroxidase_like, Dual oxidase and re 1e-22
cd09825565 cd09825, thyroid_peroxidase, Thyroid peroxidase (T 4e-22
cd05396370 cd05396, An_peroxidase_like, Animal heme peroxidas 2e-20
cd09824411 cd09824, myeloperoxidase_like, Myeloperoxidases, e 1e-18
cd09816490 cd09816, prostaglandin_endoperoxide_synthase, Anim 6e-13
cd09818484 cd09818, PIOX_like, Animal heme oxidases similar t 2e-11
cd09817550 cd09817, linoleate_diol_synthase_like, Linoleate ( 1e-08
PLN02283633 PLN02283, PLN02283, alpha-dioxygenase 2e-05
cd09821570 cd09821, An_peroxidase_bacterial_2, Uncharacterize 5e-05
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme peroxidases Back     alignment and domain information 
 Score =  163 bits (416), Expect = 1e-49
 Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 7/170 (4%)

Query: 11  IDMVTWMHRPSIV--QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHG 68
           +++      P  +  +G LD LL G  TQ  Q  + ++ D    +       PF     G
Sbjct: 196 VNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQKVDRFFTDELTTHFFFRGGNPF-----G 250

Query: 69  DDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDID 128
            DL A+ IQR RD+G+PGYN++R++ GL    +F++L  ++ PE I  L+  YK VDDID
Sbjct: 251 LDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIMSPETIQKLRRLYKSVDDID 310

Query: 129 LFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
           L+VGG  E P+   L GPTF  +I +QF R + GDRFW+   G+P SFT 
Sbjct: 311 LYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYENGGQPSSFTP 360

Peroxinectin is an arthropod protein that plays a role in invertebrate immunity mechanisms. Specifically, peroxinectins are secreted as cell-adhesive and opsonic peroxidases. The immunity mechanism appears to involve an interaction between peroxinectin and a transmembrane receptor of the integrin family. Human myeloperoxidase, which is included in this wider family, has also been reported to interact with integrins. Length = 378
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase Back     alignment and domain information
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of peroxidasin and related proteins Back     alignment and domain information
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of heme peroxidases, mostly bacterial Back     alignment and domain information
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme peroxidases Back     alignment and domain information
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO) Back     alignment and domain information
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related proteins Back     alignment and domain information
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil peroxidases, and lactoperoxidases Back     alignment and domain information
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin endoperoxide synthase and related bacterial proteins Back     alignment and domain information
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant pathogen-inducible oxygenases Back     alignment and domain information
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase and related enzymes Back     alignment and domain information
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase Back     alignment and domain information
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial family of heme peroxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 178
KOG2408|consensus719 100.0
PF03098530 An_peroxidase: Animal haem peroxidase; InterPro: I 100.0
PLN02283633 alpha-dioxygenase 100.0
>KOG2408|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.4e-52  Score=388.10  Aligned_cols=171  Identities=40%  Similarity=0.635  Sum_probs=159.8

Q ss_pred             CCCCCC-Cc---ccchhhhccChhhhh--hhHHHHHHHHhhccccCc-CCCccchhhhhhhhcCCCCCCCCCCCchHHHH
Q psy746            2 IAKSGK-AA---QIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQPF-EDWWEDFNINNKLKTNHPPFQYDPHGDDLTAI   74 (178)
Q Consensus         2 ~~~~~~-~~---~~~L~d~~~~p~~l~--~~~d~llrGl~~q~~~~~-d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~al   74 (178)
                      .+++++ .+   .+++++.|++|..+.  +|+|+++|||.++++++. |..+ +.+|++++|....    ....+||+||
T Consensus       484 l~~~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~d~~~-~~~i~~~lf~~~~----~~~~~DL~ai  558 (719)
T KOG2408|consen  484 LDENFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPDDQLL-NGEITERLFVKTD----EDGELDLAAL  558 (719)
T ss_pred             hcccCcccccccCchhhhhhcchhhhhhccChhHHHHHHHhchhhcccchhc-CHHHHHHHhhhcC----cccccchhhh
Confidence            355666 33   688899999999887  999999999999999999 8999 9999999998877    4233999999


Q ss_pred             HHHHHHhcCCccHHHHHHHhCCCCCCCcccccCCCCHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHH
Q psy746           75 GIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIAD  154 (178)
Q Consensus        75 nIqRgRDhGlp~Yn~~R~~cgl~~~~~f~dl~~~~~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~  154 (178)
                      |||||||||||+||+||++|||+++.+|+||+.+|.++++++|+++|++|||||||||+++|++++|+++|||++|||++
T Consensus       559 nIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~kl~~lY~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~  638 (719)
T KOG2408|consen  559 NIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIINKLRTLYGTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAE  638 (719)
T ss_pred             hhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHHHHHHhcCCchhhcccccccccccCCCceecccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcceeecCCCCCCCCC
Q psy746          155 QFYRWKFGDRFWFSVLGKPWSFTE  178 (178)
Q Consensus       155 qF~rl~~gDRf~ye~~~~p~~Ft~  178 (178)
                      ||.|+|+|||||||| .+|+.||+
T Consensus       639 Qf~r~r~gDRf~yen-~~~~~Ft~  661 (719)
T KOG2408|consen  639 QFLRLRDGDRFWYEN-FNPGVFTP  661 (719)
T ss_pred             HHHHHhccCceeecC-CCCCccCH
Confidence            999999999999999 88999985

>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02283 alpha-dioxygenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query178
2r5l_A595 Crystal Structure Of Lactoperoxidase At 2.4a Resolu 1e-15
2e9e_A595 Crystal Structure Of The Complex Of Goat Lactoperox 1e-15
2ikc_A595 Crystal Structure Of Sheep Lactoperoxidase At 3.25 1e-15
3r5q_A595 Crystal Structure Of Sheep Lactoperoxidase In Compl 1e-15
2z5z_A595 Crystal Structure Of The Complex Of Buffalo Lactope 2e-15
2o86_A595 Crystal Structure Of A Ternary Complex Of Buffalo L 2e-15
2pt3_A595 Crystal Structure Of Bovine Lactoperoxidase At 2.34 2e-15
2ips_A595 Crystal Structure Of A Ternary Complex Of Bovine La 2e-15
3erh_A595 First Structural Evidence Of Substrate Specificity 2e-15
2gj1_A583 Crystal Structure Of Bovine Lactoperoxidase At 2.3a 2e-15
2gjm_A583 Crystal Structure Of Buffalo Lactoperoxidase At 2.7 2e-15
1cxp_C466 Cryogenic Crystal Structure Of Human Myeloperoxidas 9e-13
1myp_C466 X-Ray Crystal Structure Of Canine Myeloperoxidase A 9e-13
3f9p_C467 Crystal Structure Of Myeloperoxidase From Human Leu 9e-13
4hhr_A652 Crystal Structure Of Fatty Acid Alpha-dioxygenase ( 1e-06
3krk_A591 X-Ray Crystal Structure Of Arachidonic Acid Bound I 4e-05
3tzi_A593 X-Ray Crystal Structure Of Arachidonic Acid Bound I 7e-05
3nt1_A587 High Resolution Structure Of Naproxen:cox-2 Complex 8e-05
3qh0_A610 X-Ray Crystal Structure Of Palmitic Acid Bound To T 8e-05
3mdl_A587 X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol 8e-05
1pxx_A604 Crystal Structure Of Diclofenac Bound To The Cycloo 8e-05
3hs5_A591 X-Ray Crystal Structure Of Arachidonic Acid Bound T 9e-05
3pgh_A587 Cyclooxygenase-2 (Prostaglandin Synthase-2) Complex 9e-05
3rr3_A560 Structure Of (R)-Flurbiprofen Bound To Mcox-2 Lengt 9e-05
1cvu_A552 Crystal Structure Of Arachidonic Acid Bound To The 1e-04
1ddx_A552 Crystal Structure Of A Mixture Of Arachidonic Acid 1e-04
3olt_A592 X-Ray Crystal Structure Of Arachidonic Acid Bound T 1e-04
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution Length = 595 Back     alignment and structure 
Iteration: 1

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 67  HGDDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENI--HLLKLGYKHV 124
           HG DL AI +QR RD+GMPGYN +R + GL   K+ + L  V+  + +   LL L YK  
Sbjct: 429 HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDL-YKTP 487
Query: 125 DDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFTE 178
           D+ID+++GG  E  +     GP    ++  QF + + GDRFW+     P  FTE
Sbjct: 488 DNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTE 538
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase With Nitrate At 3.25 A Resolution Length = 595 Back     alignment and structure
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A Resolution Reveals The Binding Sites For Formate Length = 595 Back     alignment and structure
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With Tetrahydrofuran At 2.7 A Resolution Length = 595 Back     alignment and structure
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase With Fluoride Ion At 3.5a Resolution Length = 595 Back     alignment and structure
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo Lactoperoxidase With Nitrate And Iodide At 2.8 A Resolution Length = 595 Back     alignment and structure
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A Resolution Reveals Multiple Anion Binding Sites Length = 595 Back     alignment and structure
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine Lactoperoxidase With Thiocyanate And Iodide At 3.1 A Resolution Length = 595 Back     alignment and structure
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In Mammalian Peroxidases: Crystal Structures Of Substrate Complexes With Lactoperoxidases From Two Different Species Length = 595 Back     alignment and structure
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a Resolution Length = 583 Back     alignment and structure
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a Resolution Length = 583 Back     alignment and structure
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase Isoform C Length = 466 Back     alignment and structure
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3 Angstroms Resolution Length = 466 Back     alignment and structure
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes Length = 467 Back     alignment and structure
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase (arabidopsis Thaliana) Length = 652 Back     alignment and structure
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The Cyclooxygenase Channel Of L531f Murine Cox-2 Length = 591 Back     alignment and structure
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The Cyclooxygenase Channel Of G533v Murine Cox-2 Length = 593 Back     alignment and structure
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex. Length = 587 Back     alignment and structure
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The Cyclooxygenase Channel Of Cyclooxygenase-2 Length = 610 Back     alignment and structure
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound To The Cyclooxygenase Channel Of Cyclooxygenase-2 Length = 587 Back     alignment and structure
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The Cyclooxygenase Active Site Of Cox-2 Length = 604 Back     alignment and structure
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The Cyclooxygenase Channel Of Cyclooxygenase-2 Length = 591 Back     alignment and structure
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A Non- Selective Inhibitor, Flurbiprofen Length = 587 Back     alignment and structure
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2 Length = 560 Back     alignment and structure
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The Cyclooxygenase Active Site Of Cox-2 Length = 552 Back     alignment and structure
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And Prostaglandin Bound To The Cyclooxygenase Active Site Of Cox-2: Prostaglandin Structure Length = 552 Back     alignment and structure
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The Cyclooxygenase Channel Of R513h Murine Cox-2 Length = 592 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query178
3nt1_A587 Prostaglandin-endoperoxide synthase 2; prostagland 3e-37
1q4g_A553 Prostaglandin G/H synthase 1; cyclooxygenase, non- 2e-35
1d2v_C466 Myeloperoxidase; heme-protein, oxidoreductase, per 3e-34
3q9k_A595 Lactoperoxidase, LPO; bovine lactoperoxidase, oxid 8e-32
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587 Back     alignment and structure
 Score =  133 bits (336), Expect = 3e-37
 Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 19/169 (11%)

Query: 10  QIDMVTWMHRPSIV-QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHG 68
           +     +++  SI+ +  L   +E    Q                               
Sbjct: 370 EYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRV----------------AGGRNVPIAV 413

Query: 69  DDLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDID 128
             +    I + R+      NE+RK   LKP  SFEEL+     E    LK  Y  +D ++
Sbjct: 414 QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGE--KEMAAELKALYSDIDVME 471

Query: 129 LFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 177
           L+    +E P  D++FG T   + A    +   G+        KP +F 
Sbjct: 472 LYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFG 520
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553 Back     alignment and structure
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Length = 466 Back     alignment and structure
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Length = 595 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query178
3q9k_A595 Lactoperoxidase, LPO; bovine lactoperoxidase, oxid 100.0
1d2v_C466 Myeloperoxidase; heme-protein, oxidoreductase, per 100.0
3nt1_A587 Prostaglandin-endoperoxide synthase 2; prostagland 100.0
1q4g_A553 Prostaglandin G/H synthase 1; cyclooxygenase, non- 100.0
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Back     alignment and structure
Probab=100.00  E-value=4e-52  Score=382.20  Aligned_cols=162  Identities=32%  Similarity=0.495  Sum_probs=151.4

Q ss_pred             cccchhhhccChhhhh--hhHHHHHHHHhhcccc--CcCCCccchhhhhhhhcCCCCCCCCCCCchHHHHHHHHHHhcCC
Q psy746            9 AQIDMVTWMHRPSIVQ--GYLDHLLEGQQTQFIQ--PFEDWWEDFNINNKLKTNHPPFQYDPHGDDLTAIGIQRQRDYGM   84 (178)
Q Consensus         9 ~~~~L~d~~~~p~~l~--~~~d~llrGl~~q~~~--~~d~~~~~~~l~~~lf~~~~~~~~~~~g~DL~alnIqRgRDhGl   84 (178)
                      +.++|.+.||+|..+.  +|+|+++|||++|+++  +.|.++ +++|+++||+...    ...|+||+|+||||||||||
T Consensus       372 ~~~~L~~~ff~~~~~~~~~gid~llrGl~~q~a~~~~~d~~~-~~~l~~~Lf~~~~----~~~g~DL~alnIqRgRdhGl  446 (595)
T 3q9k_A          372 AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMV-TSELRNKLFQPTH----KIHGFDLAAINLQRCRDHGM  446 (595)
T ss_dssp             CEEEGGGGBTCCHHHHTTTCSHHHHHHHHHSEEECCCTTSCS-CHHHHTCEECTTS----CSEEECHHHHHHHHHHHTTC
T ss_pred             CceeHHHHhcChHHhhhccchHHHHHHHhhCcccccCCCccC-CHHHHHHhccCCC----ccccccHHHHHHHHHHHhCC
Confidence            5799999999999776  8999999999999999  889999 9999999998665    42499999999999999999


Q ss_pred             ccHHHHHHHhCCCCCCCcccccCCC-CHHHHHHHHHhccCCCcccccccccCCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q psy746           85 PGYNEFRKYAGLKPVKSFEELSDVI-GPENIHLLKLGYKHVDDIDLFVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGD  163 (178)
Q Consensus        85 p~Yn~~R~~cgl~~~~~f~dl~~~~-~~~~~~~L~~lY~~vddVDL~vG~l~E~~~~gs~~Gpt~~cii~~qF~rl~~gD  163 (178)
                      |+||+||++|||+++++|+||+..| +++++++|+++|++|||||||||+++|++++|+.+||||+|||++||.|||+||
T Consensus       447 p~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~~l~~lY~~~d~iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gD  526 (595)
T 3q9k_A          447 PGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGD  526 (595)
T ss_dssp             CCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCCCCCCHHHHhhhcCcHHHHHHHHHHhCCccccceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999655 688889999999999999999999999999999999999999999999999999


Q ss_pred             cceeecCCCCCCCCC
Q psy746          164 RFWFSVLGKPWSFTE  178 (178)
Q Consensus       164 Rf~ye~~~~p~~Ft~  178 (178)
                      ||||||+   ++||+
T Consensus       527 Rf~yen~---~~ft~  538 (595)
T 3q9k_A          527 RFWWENP---GVFTE  538 (595)
T ss_dssp             TTCTTSB---TTBCH
T ss_pred             CCeecCC---CcCCH
Confidence            9999974   58984
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Back     alignment and structure
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... Back     alignment and structure
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 178
d1cvua1511 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mou 2e-37
g1cxp.1570 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapi 4e-37
d1q4ga1511 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {She 1e-36
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Length = 511 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  132 bits (334), Expect = 2e-37
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 19/168 (11%)

Query: 11  IDMVTWMHRPSIV-QGYLDHLLEGQQTQFIQPFEDWWEDFNINNKLKTNHPPFQYDPHGD 69
                +++  SI+ +  L   +E    Q               N                
Sbjct: 330 YSFKQFLYNNSILLEHGLTQFVESFTRQIAGRV------AGGRN----------VPIAVQ 373

Query: 70  DLTAIGIQRQRDYGMPGYNEFRKYAGLKPVKSFEELSDVIGPENIHLLKLGYKHVDDIDL 129
            +    I + R+      NE+RK   LKP  SFEEL+     E    LK  Y  +D ++L
Sbjct: 374 AVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMEL 431

Query: 130 FVGGYLENPLHDSLFGPTFTYVIADQFYRWKFGDRFWFSVLGKPWSFT 177
           +    +E P  D++FG T   + A    +   G+        KP +F 
Sbjct: 432 YPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFG 479
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Length = 511 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query178
g1cxp.1570 Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606 100.0
d1cvua1511 Prostaglandin H2 synthase {Mouse (Mus musculus) [T 100.0
d1q4ga1511 Prostaglandin H2 synthase {Sheep (Ovis aries) [Tax 100.0
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure