Psyllid ID: psy7547

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGFKTSSLTKPHINRKIPSTDYKMN
Secondary Structure (PSIPRED)
cccccEEEEEEEccccccEEEEHHHHHHHHHHHHcccccEEEEEEEEEEEEEEccccccEEEEEcccccEEEccccccEEEEEEEccHHHHHHHHHHHHHHcccccccccEEccEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEcEEcccccccEEEEccccccEEcccccccccEEEEccEEEEEccccccccccccccEEEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTnrclsrrcyscaggncsykmtssypsiicppgydmcqslcyngtinvhrctniahdctsmrntvistngsgfktssltkphinrkipstdykmn
Flexible Loop (DISEMBL)
mvnkrvlkvekwfgtkkeiaaVRTVCSHisnmlkgvtkdFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNgsgfktssltkphinrkipstdykmn
Low Complexity Region (SEG)
MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGFKTSSLTKPHINRKIPSTDYKMN
Disordered region (IsUnstruct)
*****VLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVIS****************************
Disordered Region (DISOPRED)
***KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGFKTSSLTKPHINRKIPS******
Disordered Region (DISEMBL)
MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGFKTSSLTKPHINRKIPSTDYKMN
Disordered Region (DISPRO)
***KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGFKTSSLTKPHINRKIP*T*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGFKTSSLTKPHINRKIPSTDYKMN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q963B7	190	60S ribosomal protein L9	N/A	N/A	0.289	0.210	0.825	1e-13
P50882	190	60S ribosomal protein L9	yes	N/A	0.289	0.210	0.8	3e-12
O02376	141	60S ribosomal protein L9	N/A	N/A	0.282	0.276	0.717	4e-10
Q95Y90	189	60S ribosomal protein L9	yes	N/A	0.282	0.206	0.641	4e-09
Q3SYR7	192	60S ribosomal protein L9	yes	N/A	0.268	0.192	0.594	7e-08
P17077	192	60S ribosomal protein L9	yes	N/A	0.268	0.192	0.594	7e-08
P51410	192	60S ribosomal protein L9	yes	N/A	0.268	0.192	0.594	7e-08
P32969	192	60S ribosomal protein L9	yes	N/A	0.268	0.192	0.594	7e-08
Q5IFJ7	192	60S ribosomal protein L9	N/A	N/A	0.268	0.192	0.567	1e-07
Q90YW0	192	60S ribosomal protein L9	N/A	N/A	0.434	0.312	0.430	1e-07

>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVN RVLKVEKWFG+KKE+AAVRTVCSH+ NM+KGVTK F
Sbjct: 47 MVNPRVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 86

Spodoptera frugiperda (taxid: 7108)

>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          M +KR LKVEKWFGTKKE+AAVRTVCSHI NM+KGVT  F
Sbjct: 47 MPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGF 86

Drosophila melanogaster (taxid: 7227)

>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 32/39 (82%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          V K  L+V KWFG +KEIAA+RTVCSHI NM+KGVTK F
Sbjct: 48 VGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGF 86

Haemonchus contortus (taxid: 6289)

>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          + K  L+V KWFG +KE+AA+RTVCSHI NM+KGVT  F
Sbjct: 48 IGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGF 86

Caenorhabditis elegans (taxid: 6239)

>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query: 4  KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

Bos taurus (taxid: 9913)

>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query: 4  KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

Rattus norvegicus (taxid: 10116)

>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query: 4  KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

Mus musculus (taxid: 10090)

>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query: 4  KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

Homo sapiens (taxid: 9606)

>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 31/37 (83%)

Query: 4  KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          K+ L+V+KW+G +KE+A +RT+CSH+ NM+KGVT  F
Sbjct: 52 KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGF 88

Macaca fascicularis (taxid: 9541)

>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 7   LKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTS 66
           L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F     R   R  Y+    N   + T 
Sbjct: 55  LRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF-----RYKMRSVYAHFPINVVIQETG 109

Query: 67  SYPSI 71
           S   I
Sbjct: 110 SLVEI 114

Ictalurus punctatus (taxid: 7998)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
110671494	189	putative ribosomal protein L9 [Diaphorin	0.289	0.211	0.975	4e-14
339283878	193	60S ribosomal protein L9 [Laodelphax str	0.289	0.207	0.875	2e-12
332372921	190	unknown [Dendroctonus ponderosae]	0.289	0.210	0.825	5e-12
383855254	190	PREDICTED: 60S ribosomal protein L9-like	0.289	0.210	0.85	5e-12
264667321	189	ribosomal protein L9 [Chrysomela tremula	0.289	0.211	0.825	8e-12
21759393	190	RecName: Full=60S ribosomal protein L9 g	0.289	0.210	0.825	8e-12
91080965	189	PREDICTED: similar to ribosomal protein	0.289	0.211	0.825	8e-12
70909653	189	ribosomal protein L9e [Cicindela litorea	0.289	0.211	0.825	9e-12
242007986	189	60S ribosomal protein L9, putative [Pedi	0.876	0.640	0.369	1e-11
154091284	209	ribosomal protein L9 [Heliconius melpome	0.289	0.191	0.8	1e-11

>gi|110671494|gb|ABG81998.1| putative ribosomal protein L9 [Diaphorina citri]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/40 (97%), Positives = 39/40 (97%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK F
Sbjct: 47 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGF 86

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339283878|gb|AEJ38208.1| 60S ribosomal protein L9 [Laodelphax striatella]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVN R+LKVEKWFGTKKE+AAVRTVCSHI NMLKGVTK F
Sbjct: 51 MVNPRLLKVEKWFGTKKELAAVRTVCSHIENMLKGVTKGF 90

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372921|gb|AEE61602.1| unknown [Dendroctonus ponderosae]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          M+N RVLKVEKWFGTKKE+AAVRTVCSH+ NMLKGVTK +
Sbjct: 47 MINPRVLKVEKWFGTKKELAAVRTVCSHVENMLKGVTKGY 86

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855254|ref|XP_003703131.1| PREDICTED: 60S ribosomal protein L9-like [Megachile rotundata]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVN R+LKVEKWFGTKKE+AAVRTVCSHI NMLKGVTK +
Sbjct: 47 MVNPRLLKVEKWFGTKKELAAVRTVCSHIENMLKGVTKGY 86

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667321|gb|ACY71246.1| ribosomal protein L9 [Chrysomela tremula]

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVN ++LKVEKWFGTKKE+AAVRTVCSH+ NMLKGVTK F
Sbjct: 47 MVNPKLLKVEKWFGTKKELAAVRTVCSHVENMLKGVTKGF 86

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21759393|sp|Q963B7.1|RL9_SPOFR RecName: Full=60S ribosomal protein L9 gi|14994664|gb|AAK76989.1|AF391091_1 ribosomal protein L9 [Spodoptera frugiperda]

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVN RVLKVEKWFG+KKE+AAVRTVCSH+ NM+KGVTK F
Sbjct: 47 MVNPRVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 86

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080965|ref|XP_974780.1| PREDICTED: similar to ribosomal protein L9e [Tribolium castaneum] gi|270005357|gb|EFA01805.1| hypothetical protein TcasGA2_TC007406 [Tribolium castaneum]

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVN R+LKVEKWFGTKKE+AAVRTVCSH+ NMLKGVTK +
Sbjct: 47 MVNPRLLKVEKWFGTKKELAAVRTVCSHVENMLKGVTKGY 86

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909653|emb|CAJ17250.1| ribosomal protein L9e [Cicindela litorea]

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          MVN R+L+VEKWFGTKKE+AAVRTVCSHI NMLKGVTK +
Sbjct: 47 MVNPRLLRVEKWFGTKKELAAVRTVCSHIENMLKGVTKGY 86

Source: Cicindela litorea

Species: Cicindela litorea

Genus: Cicindela

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007986|ref|XP_002424794.1| 60S ribosomal protein L9, putative [Pediculus humanus corporis] gi|212508332|gb|EEB12056.1| 60S ribosomal protein L9, putative [Pediculus humanus corporis]

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 64/138 (46%), Gaps = 17/138 (12%)

Query: 1   MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF----------------TIFT 44
           MVNK ++KVEKWFGTKKE+A+VRTVCSHI NM+KGVTK F                T   
Sbjct: 47  MVNKSLIKVEKWFGTKKELASVRTVCSHIENMIKGVTKGFQYKMRAVYAHFPINCVTTEN 106

Query: 45  NRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSM 104
           NR L  R +         KM+     I  P   D    +  N   +V R   +    T++
Sbjct: 107 NRVLEIRNFLGEKFIRKVKMSKGVTVINSPKMKDEL-IIEGNSLEDVSRSAALIQQSTTV 165

Query: 105 RNTVISTNGSGFKTSSLT 122
           +N  I     G   S  T
Sbjct: 166 KNKDIRKFLDGLYVSEKT 183

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|154091284|gb|ABS57450.1| ribosomal protein L9 [Heliconius melpomene]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 37/40 (92%)

Query: 1   MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
           MVN R+LKVEKWFG+KKE+AAVRTVCSH+ NM+KGVTK F
Sbjct: 66  MVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 105

Source: Heliconius melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0015756	190	RpL9 "Ribosomal protein L9" [D	0.289	0.210	0.8	1.2e-12
WB|WBGene00004420	189	rpl-9 [Caenorhabditis elegans	0.282	0.206	0.641	3.2e-10
UNIPROTKB|E1BUZ8	187	RPL9 "Uncharacterized protein"	0.268	0.197	0.594	3.6e-09
UNIPROTKB|F1NS91	181	RPL9 "Uncharacterized protein"	0.268	0.204	0.594	3.6e-09
UNIPROTKB|G3MXR3	192	G3MXR3 "Uncharacterized protei	0.268	0.192	0.594	4.7e-09
UNIPROTKB|G3MYL1	192	Bt.105281 "Uncharacterized pro	0.268	0.192	0.594	4.7e-09
UNIPROTKB|G3N0T8	192	G3N0T8 "Uncharacterized protei	0.268	0.192	0.594	4.7e-09
UNIPROTKB|Q3SYR7	192	RPL9 "60S ribosomal protein L9	0.268	0.192	0.594	4.7e-09
UNIPROTKB|E2R149	192	RPL9 "Uncharacterized protein"	0.268	0.192	0.594	4.7e-09
UNIPROTKB|D6RAN4	182	RPL9 "60S ribosomal protein L9	0.268	0.203	0.594	4.7e-09

FB|FBgn0015756 RpL9 "Ribosomal protein L9" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query:     1 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             M +KR LKVEKWFGTKKE+AAVRTVCSHI NM+KGVT  F
Sbjct:    47 MPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGF 86

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0019843 "rRNA binding" evidence=IEA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

WB|WBGene00004420 rpl-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query:     2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             + K  L+V KWFG +KE+AA+RTVCSHI NM+KGVT  F
Sbjct:    48 IGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGF 86

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

UNIPROTKB|E1BUZ8 RPL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             +R L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    52 RRKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

UNIPROTKB|F1NS91 RPL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             +R L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    41 RRKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 77

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

UNIPROTKB|G3MXR3 G3MXR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|G3MYL1 Bt.105281 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|G3N0T8 G3N0T8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q3SYR7 RPL9 "60S ribosomal protein L9" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

GO:0005840 "ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R149 RPL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|D6RAN4 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:     4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
             K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct:    52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
PTZ00027	190	PTZ00027, PTZ00027, 60S ribosomal protein L6; Prov	2e-12
PRK05518	180	PRK05518, rpl6p, 50S ribosomal protein L6P; Review	6e-07
PTZ00179	189	PTZ00179, PTZ00179, 60S ribosomal protein L9; Prov	3e-06
TIGR03653	170	TIGR03653, arch_L6P, archaeal ribosomal protein L6	6e-06
pfam00347	76	pfam00347, Ribosomal_L6, Ribosomal protein L6	4e-04

>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 3  NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          + + +KVE WFGT   +A +RTVCSHI NM+ GVTK F
Sbjct: 50 DGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVTKKF 87

Length = 190

>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 8  KVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
           +E  F  KK  A V T  SHI NM+KGVT+ F 
Sbjct: 53 VIETEFARKKTKAMVGTFASHIKNMIKGVTEGFE 86

Length = 180

>gnl|CDD|140206 PTZ00179, PTZ00179, 60S ribosomal protein L9; Provisional

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 2  VNK--RVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRC 47
          VNK  R     +WFG+K   + + T  SH+ NM+ GVTK F  F  R 
Sbjct: 46 VNKKNRTFTAVRWFGSKIPNSTINTALSHVRNMITGVTKGFR-FKVRF 92

Length = 189

>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 9  VEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
          +E  F  KK+ A V T  SHI NM+KGVT+ F 
Sbjct: 48 IETDFARKKDKAMVGTYRSHIKNMIKGVTEGFE 80

Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 170

>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 6  VLKVEKWFGTKKE-----IAAVRTVCSHISNMLKGVTK 38
           + V    G  KE      A + T  + I NM KGV+ 
Sbjct: 38 KITVIIVSGIDKEKVGQFAALIGTYRAPIPNMGKGVSY 75

Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
PTZ00179	189	60S ribosomal protein L9; Provisional	99.41
PTZ00027	190	60S ribosomal protein L6; Provisional	99.37
PRK05498	178	rplF 50S ribosomal protein L6; Validated	99.3
PRK05518	180	rpl6p 50S ribosomal protein L6P; Reviewed	99.28
TIGR03653	170	arch_L6P archaeal ribosomal protein L6P. Members o	99.25
TIGR03654	175	L6_bact ribosomal protein L6, bacterial type.	99.24
KOG3255|consensus	179		99.24
COG0097	178	RplF Ribosomal protein L6P/L9E [Translation, ribos	99.23
CHL00140	178	rpl6 ribosomal protein L6; Validated	99.19
PF00347	77	Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0	98.46
KOG3254|consensus	211		94.7

>PTZ00179 60S ribosomal protein L9; Provisional

Probab=99.41  E-value=7.9e-14  Score=108.68  Aligned_cols=59  Identities=29%  Similarity=0.537  Sum_probs=55.1

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCcc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQ   81 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~~   81 (138)
                      +++.|.|..|.++++..|..+|++|||+||++||++||                    +|+|+.+|.||||.+.++|..
T Consensus        49 ~~~~I~v~~~~~~kk~~al~Gt~rslI~NMI~GVt~GF--------------------~k~L~ivgvgyp~ra~v~g~~  107 (189)
T PTZ00179         49 KNRTFTAVRWFGSKIPNSTINTALSHVRNMITGVTKGF--------------------RFKVRFAYAHFPISVSVENQL  107 (189)
T ss_pred             cCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcCCE--------------------EEEEEEEEeCcceEEEEcCCE
Confidence            35689999999999999999999999999999999999                    999999999999999998843

>PTZ00027 60S ribosomal protein L6; Provisional

Probab=99.37  E-value=2.7e-13  Score=105.75  Aligned_cols=55  Identities=47%  Similarity=0.839  Sum_probs=52.3

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY   77 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkv   77 (138)
                      .++.|.|+.|+++++..|..+|++|||+||++||++||                    +|+|+.+|.|||+.+++
T Consensus        50 ~~~~i~v~~~~~~~k~~a~~Gt~rslI~NmI~GVt~Gf--------------------~~~LeivGvGyra~~~v  104 (190)
T PTZ00027         50 DGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVTKKF--------------------QYKMRLVYAHFPINSNI  104 (190)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcCCE--------------------EEEEEEEEeeeeEEEEE
Confidence            46789999999999999999999999999999999999                    99999999999999776

>PRK05498 rplF 50S ribosomal protein L6; Validated

Probab=99.30  E-value=9.4e-13  Score=100.46  Aligned_cols=56  Identities=23%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC   80 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~   80 (138)
                      +++.|.|+.|+++|++.|+++|++|||+||++||++||                    +|+|+.+|.||-+  .+++.
T Consensus        46 ~~~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi~GVt~Gf--------------------~~~L~lvGvgyrv--~~~g~  101 (178)
T PRK05498         46 EDNEITVTRPDDSKKARALHGTTRALINNMVVGVTEGF--------------------EKKLEIVGVGYRA--QVKGK  101 (178)
T ss_pred             ECCEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhcCCCe--------------------EEEEEEEeEEEEE--EEeCC
Confidence            45789999999999999999999999999999999999                    9999999999944  55553

>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed

Probab=99.28  E-value=1.4e-12  Score=101.25  Aligned_cols=59  Identities=34%  Similarity=0.437  Sum_probs=55.0

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCcc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQ   81 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~~   81 (138)
                      +++.|.|..|.++|+..|+.+|++|||+||++||++||                    +|+|+.++.|||+...++|..
T Consensus        48 ~~~~i~v~~~~~~kk~ra~~gt~rslI~NmI~GVt~Gf--------------------~~~LelvGvGypira~~~g~~  106 (180)
T PRK05518         48 EDGKVVIETEFARKKTKAMVGTFASHIKNMIKGVTEGF--------------------EYKLKIVYSHFPMQVKVQGNE  106 (180)
T ss_pred             ECCEEEEEECCCCHHHHHHHHHHHHHHHhhheecccce--------------------EEEEEEEecCccEEEEEcCCE
Confidence            46789999999999999999999999999999999999                    999999999999998888743

>TIGR03653 arch_L6P archaeal ribosomal protein L6P

Probab=99.25  E-value=2.4e-12  Score=98.83  Aligned_cols=58  Identities=36%  Similarity=0.446  Sum_probs=54.2

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC   80 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~   80 (138)
                      +++.|.|+.|.+.|+..|+.+|++|||+||++|||+||                    +|+|+.++.|||+.+.++|.
T Consensus        42 ~~~~i~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~Gf--------------------~~~LeivGvGy~~ra~~~g~   99 (170)
T TIGR03653        42 EDGKVVIETDFARKKDKAMVGTYRSHIKNMIKGVTEGF--------------------EYKMKVVYSHFPMQVKVEGN   99 (170)
T ss_pred             eCCEEEEEeCCCCHHHHHHHHHHHHHHHhheeecccCe--------------------EEEEEEEeccccEEEEEcCC
Confidence            46789999999999999999999999999999999999                    99999999999998877774

Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.

>TIGR03654 L6_bact ribosomal protein L6, bacterial type

Probab=99.24  E-value=3.2e-12  Score=97.56  Aligned_cols=56  Identities=21%  Similarity=0.140  Sum_probs=50.5

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC   80 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~   80 (138)
                      +++.|.|+.|+++++..|+++|++|||+||++||++||                    +|+|+.+|.||  .+.+++.
T Consensus        45 ~~~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~GVt~Gf--------------------~~~L~lvGvgy--rv~~~g~  100 (175)
T TIGR03654        45 EDGQLTVSRPNDSKEARALHGTTRALINNMVIGVSEGF--------------------EKKLEIVGVGY--RAQLQGK  100 (175)
T ss_pred             ECCEEEEEecCCCHHHHHHHHHHHHHHHHHhheeccCc--------------------EEEEEEEEEEE--EEEEeCC
Confidence            46789999999999999999999999999999999999                    99999999999  4455553

>KOG3255|consensus

Probab=99.24  E-value=2.6e-13  Score=106.89  Aligned_cols=55  Identities=44%  Similarity=0.693  Sum_probs=51.5

Q ss_pred             EEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547           6 VLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC   80 (138)
Q Consensus         6 ~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~   80 (138)
                      .+++++|||.||+.|+++|++|||+||++||+.||                    .|||+.+|+|||++...+..
T Consensus        54 ~ik~~~~~~~Rk~va~l~t~~s~ien~i~gvt~~~--------------------i~k~~av~a~f~in~~~~~~  108 (179)
T KOG3255|consen   54 RLKIDKWWGTRKGVACLRTVVSHIENCIKGVTIGF--------------------IYKMRAVYAHFPINTVIQEN  108 (179)
T ss_pred             hhhhhhhhccchhHHHHHHHHHHHHHHHhcchHHH--------------------HHHhhhHHhhccccceecCC
Confidence            48999999999999999999999999999999999                    99999999999988766553

>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=6.8e-12  Score=98.95  Aligned_cols=54  Identities=30%  Similarity=0.260  Sum_probs=46.7

Q ss_pred             CcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCC
Q psy7547           4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDM   79 (138)
Q Consensus         4 kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg   79 (138)
                      ++.+.+..|..+++. |+++|+.|||+||++|||+||                    +|+|+.+|.|||+++ ..+
T Consensus        48 ~~~~vv~~~~~k~~~-a~~Gt~rali~Nmv~GVteGf--------------------~~kL~ivgvgyra~v-~g~  101 (178)
T COG0097          48 DNILVVRPVDGKRKR-ALHGTVRALINNMVKGVTEGF--------------------EKKLEIVGVGYRAQV-VGG  101 (178)
T ss_pred             CCEEEEeecccchhH-HHHHHHHHHHHHHheecccce--------------------EEEEEEEEecceeEE-ecc
Confidence            455667777775555 999999999999999999999                    999999999999999 555

>CHL00140 rpl6 ribosomal protein L6; Validated

Probab=99.19  E-value=9.7e-12  Score=95.32  Aligned_cols=55  Identities=24%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCC
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDM   79 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg   79 (138)
                      +++.|.|+.|+++|+..|+++|++|||+||++||++||                    +|+|+.+|.||-.  .+++
T Consensus        46 ~~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~GVt~Gf--------------------~~~L~lvGvGyr~--~~~g  100 (178)
T CHL00140         46 QDNSLFVSKKDESKKARALHGLYRTLINNMVIGVSEGF--------------------EKKLELQGVGYRA--QVQG  100 (178)
T ss_pred             eCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHhhcccCc--------------------eEEEEEEEEEEEE--EEeC
Confidence            45789999999999999999999999999999999999                    9999999999544  4455

>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.46  E-value=2.6e-08  Score=64.28  Aligned_cols=37  Identities=38%  Similarity=0.456  Sum_probs=34.5

Q ss_pred             cCcEEEEEEEcCCcceee---eehhHHHHHhhhhcccccc
Q psy7547           3 NKRVLKVEKWFGTKKEIA---AVRTVCSHISNMLKGVTKD   39 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA---~VrTvcSHIsNMiKGVTkg   39 (138)
                      +++.+.+..|.+.+|+.|   .++|+++|+.||++||++|
T Consensus        38 ~~~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~~G   77 (77)
T PF00347_consen   38 EDNKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVTEG   77 (77)
T ss_dssp             ETTSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred             CCCceEEEECcccHhHhhhHHhhccccccccCceeEECCC
Confidence            357899999999999999   9999999999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....

>KOG3254|consensus

Probab=94.70  E-value=0.012  Score=48.75  Aligned_cols=33  Identities=36%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             EEEEEcCCcceeeeehhHHHHHhhhhcccccce
Q psy7547           8 KVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF   40 (138)
Q Consensus         8 kVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF   40 (138)
                      ...+--.+||+.++.+|+.+.+.||++|||+||
T Consensus        84 ~~~k~~etkkqr~mwgt~R~l~~N~v~GVt~g~  116 (211)
T KOG3254|consen   84 ANIKKQETKKQRAMWGTFRALLANNVKGVTMGF  116 (211)
T ss_pred             eeecchhhHHHHHHHHHHHHHHhccchhhhhhh
Confidence            334445689999999999999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
2zkr_e	192	Structure Of A Mammalian Ribosomal 60s Subunit With		7e-09
2cql_A	100	Solution Structure Of The N-Terminal Domain Of Huma		2e-08
3izr_F	190	Localization Of The Large Subunit Ribosomal Protein		2e-06

>pdb|2ZKR|EE Chain e, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 192

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 4  KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88

>pdb|2CQL|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Ribosomal Protein L9 Length = 100

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 30/34 (88%)
Query: 4  KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVT 37
          K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 59 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVT 92

>pdb|3IZR|F Chain F, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 190

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 5  RVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
          R L+V+ WFGT++ +AA+RT  SH+ N++ GVTK +
Sbjct: 52 RKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGY 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	5e-13
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	9e-13
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	5e-12
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	9e-12
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	1e-11
2cql_A	100	OK/SW-CL.103, 60S ribosomal protein L9; N-terminal	3e-11

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191

 Score = 62.0 bits (151), Expect = 5e-13
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
           VN +++KV    G +K +AA+RTV S + NM+ GVTK + 
Sbjct: 47 KVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYK 87

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178

 Score = 61.0 bits (149), Expect = 9e-13
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
          V+   + +E      K ++ + T  SHI NM  GVT+ + 
Sbjct: 43 VDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWE 82

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188

 Score = 58.5 bits (142), Expect = 9e-12
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
                +K++ W  ++KE A ++++ S I NM++GVT+ + 
Sbjct: 47 KPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEGYK 87

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query: 3  NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
           K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT  F 
Sbjct: 51 KKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFR 89

>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Length = 100

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 21/39 (53%), Positives = 30/39 (76%)

Query: 3  NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
           K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT    
Sbjct: 58 KKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGSG 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	99.6
3j21_F	184	50S ribosomal protein L6P; archaea, archaeal, KINK	99.6
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	99.57
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	99.57
3r8s_G	176	50S ribosomal protein L6; protein biosynthesis, RN	99.51
3v2d_H	180	50S ribosomal protein L6; ribosome associated inhi	99.5
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	99.47
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	99.35
1rl6_A	177	Protein (ribosomal protein L6); RNA-binding protei	99.31
1nkw_E	212	50S ribosomal protein L6; ribosome, large subunit,	99.29
2zjr_E	185	50S ribosomal protein L6; ribosome, large ribosoma	99.27
3bbo_I	223	Ribosomal protein L6; large ribosomal subunit, spi	99.21
2cql_A	100	OK/SW-CL.103, 60S ribosomal protein L9; N-terminal	98.93

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H

Probab=99.60  E-value=7.1e-17  Score=124.94  Aligned_cols=56  Identities=39%  Similarity=0.564  Sum_probs=53.1

Q ss_pred             ccCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCc
Q psy7547           2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY   77 (138)
Q Consensus         2 v~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkv   77 (138)
                      ++++.|.|+.|+++||+.|+++|++|||+||++|||+||                    +|+|+++|.|||+++.+
T Consensus        48 ~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyri~a~v  103 (191)
T 3u5e_H           48 VNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGY--------------------KYKMRYVYAHFPINVNI  103 (191)
T ss_dssp             EETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEE
T ss_pred             ecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeeccCE--------------------EEEEEEEEEeeeEEEEE
Confidence            357899999999999999999999999999999999999                    99999999999988776

>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.60  E-value=7.3e-17  Score=124.27  Aligned_cols=58  Identities=31%  Similarity=0.450  Sum_probs=55.3

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC   80 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~   80 (138)
                      .++.|.|+.|+++|++.|+++|++|||+||++|||+||                    +|+|+++|.|||+.+.++|.
T Consensus        49 ~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgypira~~~g~  106 (184)
T 3j21_F           49 EDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTEGF--------------------TYKLKVVYSHFPISVKVQGD  106 (184)
T ss_dssp             ETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEEETT
T ss_pred             eCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeeccCe--------------------EEEEEEEEecccceEEEcCC
Confidence            45789999999999999999999999999999999999                    99999999999999999874

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E

Probab=99.57  E-value=2.2e-16  Score=121.90  Aligned_cols=56  Identities=25%  Similarity=0.526  Sum_probs=53.0

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcC
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYD   78 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvd   78 (138)
                      +++.|.|+.|+++|++.|+++|++|||+||++|||+||                    +|+|+++|.|||+++.++
T Consensus        49 ~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyr~~~~v~  104 (188)
T 4a17_E           49 TADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEGY--------------------KFKMKLAFAHFPIQEAVA  104 (188)
T ss_dssp             BTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCE--------------------EEEEEEECSSSCCEEEEC
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeeccCe--------------------EEEEEEEEEcccceEEEc
Confidence            57889999999999999999999999999999999999                    999999999999887664

>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...

Probab=99.51  E-value=2.6e-15  Score=114.52  Aligned_cols=53  Identities=19%  Similarity=0.144  Sum_probs=50.3

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP   75 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v   75 (138)
                      .++.|.|+.|+++|++.|+++|++|||+||++|||+||                    +|+|+++|.||+.++
T Consensus        45 ~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyra~~   97 (176)
T 3r8s_G           45 ADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGF--------------------TKKLQLVGVGYRAAV   97 (176)
T ss_dssp             ETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHHCE--------------------EECEEEESTTCEEEC
T ss_pred             eCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhcccCe--------------------EEEEEEeeeeeEEEe
Confidence            45789999999999999999999999999999999999                    999999999999765

>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...

Probab=99.50  E-value=2.4e-15  Score=115.06  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=51.4

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC   80 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~   80 (138)
                      +++.|.|+.|+++|++.|+++|++|||+||++|||+||                    +|+|+++|.||+..+  +|.
T Consensus        46 ~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyra~~--~g~  101 (180)
T 3v2d_H           46 EEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEGY--------------------SKELLIKGIGYRARL--VGR  101 (180)
T ss_dssp             ETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEESTTCEEEE--ETT
T ss_pred             ECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeecCCc--------------------EEEEEEEEEeeEEEE--CCC
Confidence            46789999999999999999999999999999999999                    999999999998743  553

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...

Probab=99.47  E-value=4.6e-15  Score=114.18  Aligned_cols=58  Identities=24%  Similarity=0.318  Sum_probs=55.3

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC   80 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~   80 (138)
                      .++.|.|+.|+++|++.|+++|++|||+||++|||+||                    +|+|+.+|.||||.+.++|.
T Consensus        44 ~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf--------------------~~~L~ivGvGypira~~~g~  101 (178)
T 1vq8_E           44 DGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGW--------------------EYGMEVFYSHFPMQVNVEGD  101 (178)
T ss_dssp             ETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEEETT
T ss_pred             ECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEccCe--------------------EEEEEEEeeCCceEEEEcCC
Confidence            46789999999999999999999999999999999999                    99999999999999999885

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.35  E-value=7.4e-14  Score=107.92  Aligned_cols=51  Identities=51%  Similarity=0.909  Sum_probs=49.5

Q ss_pred             EEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCc
Q psy7547           7 LKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY   77 (138)
Q Consensus         7 LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkv   77 (138)
                      |.|+.|+++|++.|+.+|++|||+||++|||+||                    +|+|+.+|.|||+++.+
T Consensus        55 i~v~~~~~~k~~~a~~Gt~rsli~NmI~GVt~Gf--------------------~~~L~lvGvGyra~v~~  105 (192)
T 2zkr_e           55 LRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF--------------------RYKMRSVYAHFPINVVI  105 (192)
T ss_dssp             EEEECSCCCHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEE
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHhCEEEeeccCc--------------------EEEEEEEEecceeEEEE
Confidence            9999999999999999999999999999999999                    99999999999999666

>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J

Probab=99.31  E-value=2.4e-13  Score=103.99  Aligned_cols=53  Identities=21%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP   75 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v   75 (138)
                      +++.|.|+.|+++|++.|+.+|++|||+||++|||+||                    +|+|+.+|.||+...
T Consensus        45 ~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf--------------------~~~L~lvGvGyra~~   97 (177)
T 1rl6_A           45 EGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGY--------------------EKALELVGVGYRASK   97 (177)
T ss_dssp             ETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEESTTCEEEE
T ss_pred             eCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcCCc--------------------EEEEEEEeeceEEEe
Confidence            46789999999999999999999999999999999999                    999999999998774

>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*

Probab=99.29  E-value=7.4e-13  Score=104.80  Aligned_cols=53  Identities=17%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP   75 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v   75 (138)
                      +++.|.|+.|+++|++.|+++|++|||+||++|||+||                    +|+|+++|.||+..+
T Consensus        73 e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~GVt~Gf--------------------~kkLelvGvGYra~~  125 (212)
T 1nkw_E           73 DGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGY--------------------TINLELRGVGFRAKL  125 (212)
T ss_pred             ECCEEEEEcCCCCHHHHHHHHHHHHHhhCEEEeeccCe--------------------EEEEEEeeeeeEEEc
Confidence            46889999999999999999999999999999999999                    999999999998874

>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H

Probab=99.27  E-value=2.3e-13  Score=105.03  Aligned_cols=53  Identities=17%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP   75 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v   75 (138)
                      +++.|.|+.|+++|++.|+.+|++|||+||++|||+||                    +|+|+++|.|||.++
T Consensus        46 ~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt~Gf--------------------~kkL~lvGvGYra~~   98 (185)
T 2zjr_E           46 DGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGY--------------------TINLELRGVGFRAKL   98 (185)
T ss_dssp             CSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCE--------------------EEEEECBSTTCCCCC
T ss_pred             eCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeeccCc--------------------EEEEEEeeeccEEEE
Confidence            46779999999999999999999999999999999999                    999999999999774

>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.21  E-value=7.8e-13  Score=105.18  Aligned_cols=54  Identities=20%  Similarity=0.166  Sum_probs=50.7

Q ss_pred             ccCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547           2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP   75 (138)
Q Consensus         2 v~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v   75 (138)
                      ++++.|.|+.|+++|++.|+++|++|||+||++|||+||                    +|+|+.+|.||+.++
T Consensus        88 ~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~GVt~Gf--------------------~kkLelvGvGYra~~  141 (223)
T 3bbo_I           88 EESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGF--------------------EKKLILVGVGYRATV  141 (223)
T ss_dssp             CSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHTTTCE--------------------EECEECCSTTCCEEE
T ss_pred             ecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEEeeccCc--------------------EEEEEEeeeceEEEe
Confidence            356789999999999999999999999999999999999                    999999999998774

>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1

Probab=98.93  E-value=7.7e-11  Score=83.06  Aligned_cols=35  Identities=57%  Similarity=1.072  Sum_probs=34.0

Q ss_pred             EEEEEEEcCCcceeeeehhHHHHHhhhhcccccce
Q psy7547           6 VLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF   40 (138)
Q Consensus         6 ~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF   40 (138)
                      .|.|+.|+++|++.|+.+|++|||+||++|||+||
T Consensus        61 ~i~v~~~~~~k~~ra~~Gt~RslI~NMI~GVt~Gf   95 (100)
T 2cql_A           61 RLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGS   95 (100)
T ss_dssp             EEEEECCSSSTHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             EEEEEccCCCHHHHHHHHHHHHHHHhhhEeecCCE
Confidence            49999999999999999999999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d2cqla1	87	d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Ho	1e-07
d2j01h1	71	d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus	5e-07
d2zjre2	78	d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococc	5e-06
d1vqoe1	79	d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon	5e-05
d1rl6a1	75	d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus	6e-05
d2qamg1	81	d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherich	7e-05

>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 1e-07
 Identities = 21/37 (56%), Positives = 30/37 (81%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
            K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT 
Sbjct: 50 KKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTL 86

>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

 Score = 42.5 bits (100), Expect = 5e-07
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
          V + V++VE+    ++  +      + I+N +KGV++
Sbjct: 34 VEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSE 70

>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 40.2 bits (94), Expect = 5e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 1  MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
            +   L VE+    +K  A      + ++N +KGV+ 
Sbjct: 40 RQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSD 77

>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 37.2 bits (86), Expect = 5e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
          V+   + +E      K ++ + T  SHI NM  GVT+
Sbjct: 42 VDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTE 78

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.7 bits (85), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
          V   V+ V +    K   A   T  S ++NM++GV+K
Sbjct: 38 VEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 74

>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 2  VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
               L      G     A   T  + +++M+ GVT+
Sbjct: 44 HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1vqoe1	79	Ribosomal protein L6 {Archaeon Haloarcula marismor	98.87
d2cqla1	87	Ribosomal protein L6 {Human (Homo sapiens) [TaxId:	98.78
d1rl6a1	75	Ribosomal protein L6 {Bacillus stearothermophilus	98.73
d2qamg1	81	Ribosomal protein L6 {Escherichia coli [TaxId: 562	98.73
d2j01h1	71	Ribosomal protein L6 {Thermus thermophilus [TaxId:	98.71
d2zjre2	78	Ribosomal protein L6 {Deinococcus radiodurans [Tax	98.64
d1vqoe2	93	Ribosomal protein L6 {Archaeon Haloarcula marismor	97.84

>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.87  E-value=1.3e-10  Score=76.23  Aligned_cols=37  Identities=30%  Similarity=0.409  Sum_probs=35.3

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD   39 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg   39 (138)
                      +++.|.|+.|.++|++.|+++|++|||+||++||++|
T Consensus        43 ~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G   79 (79)
T d1vqoe1          43 DGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEG   79 (79)
T ss_dssp             CSSEEEEECSCCSHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCEEEeccCcccchhhhhHHHHHHHHHHheeeeeCC
Confidence            5688999999999999999999999999999999987

>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.9e-10  Score=74.60  Aligned_cols=37  Identities=57%  Similarity=1.100  Sum_probs=34.9

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD   39 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg   39 (138)
                      +++.|.|+.|.++|++.|+++|++|||+||++||++|
T Consensus        51 ~~~~i~v~~~~~~k~~~a~~GT~rslI~Nmi~GVt~G   87 (87)
T d2cqla1          51 KKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLG   87 (87)
T ss_dssp             SSCEEEEECCSSSTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cccEEEeecCCCCHHHHHHHHHHHHHHHhheeeeeCC
Confidence            3578999999999999999999999999999999997

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.73  E-value=5.1e-10  Score=73.17  Aligned_cols=37  Identities=30%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD   39 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg   39 (138)
                      +++.|.|+.|..+|+..|+.+|++|||+||++||++|
T Consensus        39 ~~~~i~v~~~~~~k~~~al~GT~rsli~Nmi~GVt~G   75 (75)
T d1rl6a1          39 EGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKG   75 (75)
T ss_dssp             ETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eCceEEEccCCCcHHHHHHHHHHHHHHHHhceeecCC
Confidence            4688999999999999999999999999999999987

>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=8.6e-10  Score=72.94  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=35.0

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD   39 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg   39 (138)
                      +++.|.|+.|+++|+..|+.+|++|||+||++||++|
T Consensus        45 ~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G   81 (81)
T d2qamg1          45 ADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEG   81 (81)
T ss_dssp             SSSSCEEEECSSCTTTTHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCEEEEEeCCCChhHHHHHHHHHHHHHHheeeeeCC
Confidence            4678999999999999999999999999999999987

>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=2.4e-10  Score=73.74  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=34.7

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD   39 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg   39 (138)
                      +++.|.|+.|.++|++.|+.+|++|||+|||+||++|
T Consensus        35 ~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G   71 (71)
T d2j01h1          35 EEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEG   71 (71)
T ss_dssp             CSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eCCEEEEEecCCChHHHHHHHHHHHHHHHhheeecCC
Confidence            4578899999999999999999999999999999987

>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.64  E-value=5.4e-10  Score=73.18  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=34.6

Q ss_pred             cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547           3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD   39 (138)
Q Consensus         3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg   39 (138)
                      .++.|.|+.|..+|++.|+.+|++|||+||++||++|
T Consensus        42 ~~~~i~v~~~~~~k~~~a~~GT~rsli~Nmi~GVt~G   78 (78)
T d2zjre2          42 DGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDG   78 (78)
T ss_dssp             CSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEcCCCCHHHHHHHHHHHHHHHHheeeecCC
Confidence            4578899999999999999999999999999999987

>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.84  E-value=1.4e-06  Score=61.01  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=19.5

Q ss_pred             eeEEeeeeeeeeeCCCcCCcc
Q psy7547          61 SYKMTSSYPSIICPPGYDMCQ   81 (138)
Q Consensus        61 sYKMksvYaHFPi~vkvdg~~   81 (138)
                      +|||+++|+||||+++++|.+
T Consensus         2 ~Ykmk~vyaHFPi~v~v~g~~   22 (93)
T d1vqoe2           2 EYGMEVFYSHFPMQVNVEGDE   22 (93)
T ss_dssp             EEEEEEECSSSCCEEEEETTE
T ss_pred             EEEEEEEEEeCCeEEEEcCCE
Confidence            799999999999999999863