Psyllid ID: psy7555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRASRTYDRSYASSENQLNRDNGVIQADINRCKTVS
ccEEEHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccc
cEEEEEEccHHHHcHHHHHHHHHHHHHHHHHHHccccEEEEcEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccEEEEEccHHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccccccccccEcccccccccccc
MTTYILDLNtsillpalcmpitlpntlpnTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVvypldplkttrnrsRLWILFLWLYGsffaslplvsskfryvpegfltscsfdylasdvwtkgFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDyhqyitplssmipalfckaascidpyiyaithPRFKRELIKMFCYnnkkdltrtqyyeqpvwrtrasrtydrsyassenqlnrdngviqadinrcktvs
MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPldplkttrnrSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYnnkkdltrtqyyeqpvwrtrasrtYDRSYassenqlnrdngviqadinrcktvs
MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRASRTYDRSYASSENQLNRDNGVIQADINRCKTVS
**TYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGM***********RNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRA*********************************
MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMI***********************LCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC*******************************************************
MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGM*********KKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRASRTYDRSYASSENQLNRDNGVIQADINRCKTVS
MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNK***************************************************
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRASRTYDRSYASSENQLNRDNGVIQADINRCKTVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query322 2.2.26 [Sep-21-2011]
P90680377 Opsin, blue-sensitive OS= yes N/A 0.655 0.559 0.388 5e-40
O15973499 Rhodopsin, GQ-coupled OS= N/A N/A 0.822 0.531 0.326 4e-39
O61303371 Opsin, ultraviolet-sensit no N/A 0.695 0.603 0.364 2e-38
P35361376 Ocellar opsin OS=Limulus N/A N/A 0.661 0.566 0.368 9e-38
P35360376 Lateral eye opsin OS=Limu N/A N/A 0.661 0.566 0.364 2e-37
P09241455 Rhodopsin OS=Enteroctopus N/A N/A 0.773 0.547 0.338 3e-37
P91657382 Opsin Rh5 OS=Drosophila m no N/A 0.652 0.549 0.378 9e-37
P28680382 Opsin Rh3 OS=Drosophila p no N/A 0.658 0.554 0.379 3e-36
O02465377 Opsin-2 OS=Manduca sexta N/A N/A 0.695 0.594 0.369 3e-36
O96107384 Opsin-3 OS=Manduca sexta N/A N/A 0.683 0.572 0.369 4e-36
>sp|P90680|OPSB_APIME Opsin, blue-sensitive OS=Apis mellifera GN=BLOP PE=1 SV=2 Back     alignment and function desciption
 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 133/224 (59%), Gaps = 13/224 (5%)

Query: 52  GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFA 111
           GC++Y   G ++G     T A+IA DRY  +  P+D  +    ++ + I F W + + F 
Sbjct: 128 GCDVYSVFGSISGMGQAMTNAAIAFDRYRTISCPIDG-RLNSKQAAVIIAFTWFWVTPFT 186

Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMI 171
            LPL+    RY  EGFLT+CSFD+L  D  TK F+   F  A+VIP   I   Y R+ + 
Sbjct: 187 VLPLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRL-LS 245

Query: 172 VIKSGMSASRHAAEQ-----------KKRNIEIRLCIVAMGVIGLWFISWTPYATIALMG 220
            I++     R  A++           K+R+ E+R+  VA  +  L+ ++WTPYAT+AL+G
Sbjct: 246 SIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLAWTPYATVALIG 305

Query: 221 IFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIK 264
           ++   + +TP+S+M+PA+F K  SCIDP+IYAI HPR+++EL K
Sbjct: 306 VYGNRELLTPVSTMLPAVFAKTVSCIDPWIYAINHPRYRQELQK 349
Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.
Apis mellifera (taxid: 7460)
>sp|O15973|OPSD1_MIZYE Rhodopsin, GQ-coupled OS=Mizuhopecten yessoensis GN=SCOP1 PE=1 SV=1 Back     alignment and function description
>sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive OS=Apis mellifera GN=UVOP PE=1 SV=1 Back     alignment and function description
>sp|P35361|OPSO_LIMPO Ocellar opsin OS=Limulus polyphemus PE=1 SV=1 Back     alignment and function description
>sp|P35360|OPSL_LIMPO Lateral eye opsin OS=Limulus polyphemus PE=1 SV=1 Back     alignment and function description
>sp|P09241|OPSD_ENTDO Rhodopsin OS=Enteroctopus dofleini GN=RHO PE=1 SV=1 Back     alignment and function description
>sp|P91657|OPS5_DROME Opsin Rh5 OS=Drosophila melanogaster GN=Rh5 PE=2 SV=1 Back     alignment and function description
>sp|P28680|OPS3_DROPS Opsin Rh3 OS=Drosophila pseudoobscura pseudoobscura GN=Rh3 PE=1 SV=3 Back     alignment and function description
>sp|O02465|OPS2_MANSE Opsin-2 OS=Manduca sexta GN=OP2 PE=2 SV=2 Back     alignment and function description
>sp|O96107|OPS3_MANSE Opsin-3 OS=Manduca sexta GN=OP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
328719619 627 PREDICTED: melanopsin-B-like [Acyrthosip 0.779 0.400 0.559 2e-76
193615573422 PREDICTED: opsin, ultraviolet-sensitive- 0.822 0.627 0.492 1e-69
157109598368 ultraviolet-sensitive opsin [Aedes aegyp 0.795 0.695 0.449 2e-59
170051159 468 ultraviolet-sensitive opsin [Culex quinq 0.776 0.534 0.455 3e-58
158285473342 AGAP007548-PA [Anopheles gambiae str. PE 0.692 0.652 0.478 8e-57
158285471 463 AGAP007548-PB [Anopheles gambiae str. PE 0.692 0.481 0.478 1e-56
194869710 487 GG13849 [Drosophila erecta] gi|190654288 0.773 0.511 0.439 3e-55
195493766 486 GE20143 [Drosophila yakuba] gi|194180655 0.782 0.518 0.446 4e-55
195125800 501 GI12900 [Drosophila mojavensis] gi|19391 0.763 0.491 0.458 7e-55
24663181 483 rhodopsin 7 [Drosophila melanogaster] gi 0.723 0.482 0.463 8e-55
>gi|328719619|ref|XP_001944926.2| PREDICTED: melanopsin-B-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/259 (55%), Positives = 189/259 (72%), Gaps = 8/259 (3%)

Query: 52  GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDP-LKTTRNRSRLWILFLWLYGSFF 110
           GC+IYGF GGLTGTVSI TLA+I+LDRYYV+V+PL+  +KTT+ R+R+WI  +W+YG  F
Sbjct: 293 GCQIYGFFGGLTGTVSIMTLAAISLDRYYVIVHPLNAAVKTTKQRARVWIGLIWIYGFLF 352

Query: 111 ASLPLVSSKF-RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRIC 169
           + +P++   + RYVPEG+LTSCSFDYL+ D   KGFIL FF AAW IPF  I++CY++I 
Sbjct: 353 SIIPVMDLGYNRYVPEGYLTSCSFDYLSDDNQEKGFILVFFTAAWCIPFTTISYCYIKIL 412

Query: 170 MIV-IKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228
             V + S M+ASR   E++KR  EIRL  V +GVI LWF+SWTPYA +AL+G+FD   YI
Sbjct: 413 RAVWMTSEMAASRFGQEEEKRKTEIRLGYVVVGVIMLWFVSWTPYAMVALLGVFDRKDYI 472

Query: 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTR 288
           TPLSSMIPA+ CKAASC+DP+IYAITHPRFK EL K+      + L R  Y  +  W  +
Sbjct: 473 TPLSSMIPAVLCKAASCMDPWIYAITHPRFKNELTKLMSRKKTRKLER-DYGMKKNWGGQ 531

Query: 289 A----SRTYDRSYASSENQ 303
           +    S    R+ +SSE++
Sbjct: 532 SYSNKSGAGLRNLSSSEDE 550

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193615573|ref|XP_001943275.1| PREDICTED: opsin, ultraviolet-sensitive-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157109598|ref|XP_001650744.1| ultraviolet-sensitive opsin [Aedes aegypti] gi|108879008|gb|EAT43233.1| AAEL005322-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170051159|ref|XP_001861638.1| ultraviolet-sensitive opsin [Culex quinquefasciatus] gi|167872515|gb|EDS35898.1| ultraviolet-sensitive opsin [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|158285473|ref|XP_001687896.1| AGAP007548-PA [Anopheles gambiae str. PEST] gi|157020009|gb|EDO64545.1| AGAP007548-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|158285471|ref|XP_308329.4| AGAP007548-PB [Anopheles gambiae str. PEST] gi|157020008|gb|EAA04473.4| AGAP007548-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|194869710|ref|XP_001972505.1| GG13849 [Drosophila erecta] gi|190654288|gb|EDV51531.1| GG13849 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195493766|ref|XP_002094554.1| GE20143 [Drosophila yakuba] gi|194180655|gb|EDW94266.1| GE20143 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195125800|ref|XP_002007363.1| GI12900 [Drosophila mojavensis] gi|193918972|gb|EDW17839.1| GI12900 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|24663181|ref|NP_524035.2| rhodopsin 7 [Drosophila melanogaster] gi|16648146|gb|AAL25338.1| GH14208p [Drosophila melanogaster] gi|23096158|gb|AAF49949.2| rhodopsin 7 [Drosophila melanogaster] gi|220947168|gb|ACL86127.1| Rh7-PA [synthetic construct] gi|220956704|gb|ACL90895.1| Rh7-PA [synthetic construct] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
FB|FBgn0036260483 Rh7 "Rhodopsin 7" [Drosophila 0.720 0.480 0.465 1.3e-54
FB|FBgn0014019382 Rh5 "Rhodopsin 5" [Drosophila 0.652 0.549 0.378 2.1e-36
UNIPROTKB|Q5XXP2469 OPN4 "Melanopsin" [Phodopus su 0.667 0.458 0.361 7.2e-36
FB|FBgn0003249383 Rh3 "Rhodopsin 3" [Drosophila 0.658 0.553 0.366 1.2e-35
MGI|MGI:1353425 521 Opn4 "opsin 4 (melanopsin)" [M 0.667 0.412 0.36 1.2e-35
RGD|621701474 Opn4 "opsin 4" [Rattus norvegi 0.667 0.453 0.366 1.5e-35
FB|FBgn0003250378 Rh4 "Rhodopsin 4" [Drosophila 0.695 0.592 0.357 1.9e-35
UNIPROTKB|E1BEK2478 OPN4 "Uncharacterized protein" 0.667 0.449 0.361 3.1e-35
UNIPROTKB|F1SEN9358 OPN4 "Uncharacterized protein" 0.667 0.600 0.352 1.3e-34
UNIPROTKB|Q5YKK9487 OPN4 "Melanopsin" [Felis catus 0.645 0.427 0.356 2.8e-34
FB|FBgn0036260 Rh7 "Rhodopsin 7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 115/247 (46%), Positives = 160/247 (64%)

Query:    53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKT-TRNRSRLWILFLWLYGSFFA 111
             C +YGF+GGL+GT +I TL +IALDRY VVV+PL PL+  +R RS L IL +W Y   FA
Sbjct:   188 CRLYGFVGGLSGTCAIGTLTAIALDRYNVVVHPLQPLRRCSRLRSYLIILLIWCYSFLFA 247

Query:   112 SLPLVSSKFR-YVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICM 170
              +P +      YVPEGFLT+CSFDYL  ++  + F+  FF AA+ IP   I + Y  I  
Sbjct:   248 VMPALDIGLSVYVPEGFLTTCSFDYLNKEMPARIFMALFFVAAYCIPLTSIVYSYFYILK 307

Query:   171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITP 230
             +V     +ASR  + + K   E +L  +   +IGLWF++W+PYA +A+MG+F   ++ITP
Sbjct:   308 VVF----TASRIQSNKDKAKTEQKLAFIVAAIIGLWFLAWSPYAIVAMMGVFGLERHITP 363

Query:   231 LSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNN----KKDLTRTQYYEQPVWR 286
             L SMIPALFCK A+C+DPY+YA THPRF+ E ++M  Y      +   TR+ Y    + R
Sbjct:   364 LGSMIPALFCKTAACVDPYLYAATHPRFRVE-VRMLFYGRGVLRRVSTTRSSY----MTR 418

Query:   287 TRASRTY 293
             +R+S T+
Sbjct:   419 SRSSFTH 425
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISS
GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS
GO:0007601 "visual perception" evidence=IEA
FB|FBgn0014019 Rh5 "Rhodopsin 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XXP2 OPN4 "Melanopsin" [Phodopus sungorus (taxid:10044)] Back     alignment and assigned GO terms
FB|FBgn0003249 Rh3 "Rhodopsin 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1353425 Opn4 "opsin 4 (melanopsin)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621701 Opn4 "opsin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEK2 OPN4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEN9 OPN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5YKK9 OPN4 "Melanopsin" [Felis catus (taxid:9685)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 4e-33
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 4e-05
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 4e-04
pfam10323283 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR 9e-04
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  122 bits (308), Expect = 4e-33
 Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 4/203 (1%)

Query: 52  GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFF 110
            C++ GF+  + G  SI  L +I++DRY  +V+PL      T  R+++ IL +W+     
Sbjct: 50  LCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLL 109

Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICM 170
           +  PL+ S  R V EG +T+C  D+   +   + + L      +V+P  +I  CY  I  
Sbjct: 110 SLPPLLFSWLRTVEEGNVTTCLIDFP-EESTKRSYTLLSTLLGFVLPLLVILVCYTLILR 168

Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQY--I 228
            + K   S +  A  ++  + E +   + + V+ ++ + W PY  + L+          +
Sbjct: 169 TLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRL 228

Query: 229 TPLSSMIPALFCKAASCIDPYIY 251
            P + +I        SC++P IY
Sbjct: 229 LPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor Srv Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 322
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
KOG4220|consensus503 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.98
KOG2087|consensus363 99.92
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.79
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.78
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.66
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.62
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.34
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.34
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.25
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 99.18
KOG4193|consensus610 98.92
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.89
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.84
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 98.76
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.56
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 98.42
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.42
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 98.33
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 98.27
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 98.15
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 98.1
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 98.02
KOG4564|consensus473 97.96
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 97.81
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 97.76
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.72
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 97.37
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 96.96
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 96.87
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 96.59
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 95.21
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 92.8
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 81.99
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-43  Score=290.02  Aligned_cols=254  Identities=17%  Similarity=0.340  Sum_probs=211.6

Q ss_pred             CceeeehhhhHhhh-hhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhh
Q psy7555           1 MTTYILDLNTSILL-PALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRY   79 (322)
Q Consensus         1 ~~~~i~nLai~Dll-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy   79 (322)
                      .|.||+|||+||++ ++++.|+...+.+               ...|.+|...|++..|+......+|++++++||+|||
T Consensus        70 tnyfL~NLAfADl~~s~Fn~~f~f~yal---------------~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy  134 (423)
T KOG4219|consen   70 TNYFLVNLAFADLSMSIFNTVFNFQYAL---------------HQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRY  134 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHH---------------HhccccccceeeeccccchhhhhHhHHHHHHHHHHHH
Confidence            47899999999998 4668888887655               4799999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccC---Cceeccccccccc----c---cccchhhhhh
Q psy7555          80 YVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE---GFLTSCSFDYLAS----D---VWTKGFILTF  149 (322)
Q Consensus        80 ~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~C~~~~~~~----~---~~~~~~~~~~  149 (322)
                      +||.||++.+ .+++.+..+++++|+.++++++|..+.......+.   .....|...+++.    +   ...+.|....
T Consensus       135 ~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl  213 (423)
T KOG4219|consen  135 MAIIHPLQPR-PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVL  213 (423)
T ss_pred             HHHhhhcccC-CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeee
Confidence            9999999988 89999999999999999999999988743333332   2244565555433    1   1123478888


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccc---c
Q psy7555         150 FCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYH---Q  226 (322)
Q Consensus       150 ~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~---~  226 (322)
                      .++.+++|++++.+.|..|.+.+|..+..+.+..+..++.+.++|+.|++++++..|.+||+||.+..++.....+   .
T Consensus       214 ~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~  293 (423)
T KOG4219|consen  214 LFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRK  293 (423)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999886555555556677888899999999999999999999999988765322   2


Q ss_pred             ccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCC
Q psy7555         227 YITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNN  270 (322)
Q Consensus       227 ~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~  270 (322)
                      .....++....|+++.|++.||+||++.|++||..+++.|+++.
T Consensus       294 k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  294 KFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            23345677789999999999999999999999999999998774

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 6e-35
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 7e-35
2x72_A349 Crystal Structure Of The Constitutively Active E113 1e-23
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 1e-23
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 1e-23
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 2e-23
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 2e-23
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 3e-23
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 6e-06
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 9e-06
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 9e-06
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 1e-05
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 2e-05
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 2e-05
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 2e-05
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-05
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 2e-05
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 3e-05
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 3e-05
2lnl_A296 Structure Of Human Cxcr1 In Phospholipid Bilayers L 8e-05
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 11/226 (4%)
Query: 51  SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDP-LKTTRNRSRLWILFLWLYGSF 109
           + C++YGFIGG+ G +SI T+A I++DRY V+  P+    K +  R+ + I+F+WL+   
Sbjct: 106 AACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL 165
Query: 110 FASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRIC 169
           +A  P+      Y  EG L +CSFDY++ D  T+  IL  F   +  P  II FCY  I 
Sbjct: 166 WAIGPIFGWG-AYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIV 224
Query: 170 MIVIK-----SGMSASRHAAEQKKR----NIEIRLCIVAMGVIGLWFISWTPYATIALMG 220
           M V       + M+   +A E +K     N E+RL  +++ ++  + +SW+PYA +AL+ 
Sbjct: 225 MSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLA 284
Query: 221 IFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMF 266
            F   +++TP ++ +P +F KA++  +P IY+++HP+F+  + + F
Sbjct: 285 QFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF 330
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-67
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 4e-66
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 5e-30
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 6e-30
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 5e-20
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-19
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-15
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 8e-15
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 1e-05
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 2e-11
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 8e-11
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 5e-04
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-10
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 1e-09
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 2e-09
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 6e-09
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 1e-08
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
 Score =  214 bits (546), Expect = 2e-67
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 52  GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFA 111
           GC + GF   L G +++ +L  +A++RY VV  P+   +   N + + + F W+     A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 169

Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYL--ASDVWTKGFILTFFCAAWVIPFFIITFCYVRIC 169
           + PLV    RY+PEG   SC  DY     +   + F++  F   ++IP  +I FCY ++ 
Sbjct: 170 APPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL- 227

Query: 170 MIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYIT 229
             V     +A++       +  E  +  + + ++  + I W PYA +A            
Sbjct: 228 --VFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG 285

Query: 230 PLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
           P+   IPA F K ++  +P IY + + +F+  ++   C
Sbjct: 286 PIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.85
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.59
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.04
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 81.67
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=5.9e-44  Score=323.36  Aligned_cols=256  Identities=19%  Similarity=0.200  Sum_probs=192.3

Q ss_pred             ceeeehhhhHhhhh-hccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555           2 TTYILDLNTSILLP-ALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY   80 (322)
Q Consensus         2 ~~~i~nLai~Dll~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~   80 (322)
                      |+||+|||++||+. ++.+|+.+...+             ...+.|.+|+.+|++..++..++..+|++++++||+|||+
T Consensus        71 n~~i~~La~aDll~~~~~~p~~~~~~~-------------~~~~~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~  137 (510)
T 4grv_A           71 HYHLGSLALSDLLILLLAMPVELYNFI-------------WVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYL  137 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT-------------TCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhCCCEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence            78999999999985 558898876533             2346799999999999999999999999999999999999


Q ss_pred             eeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccC-----Cceecccccccccccccchhhhhhhhhhh
Q psy7555          81 VVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE-----GFLTSCSFDYLASDVWTKGFILTFFCAAW  154 (322)
Q Consensus        81 ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~-----~~~~~C~~~~~~~~~~~~~~~~~~~~~~~  154 (322)
                      ||++|++|+. .+++++..+++++|++++++++|+++. +......     .....|...++  ......|..+..++.+
T Consensus       138 ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~-~~~~~~~~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~~~f  214 (510)
T 4grv_A          138 AICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFT-MGLQNRSADGTHPGGLVCTPIVD--TATVKVVIQVNTFMSF  214 (510)
T ss_dssp             HHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHH-EEEEECSSSSCCGGGEEEEECSC--HHHHHHHHHHHHHHHT
T ss_pred             EEeccccccccccccccceeehHHHHHHHHHHHHHHHh-hcccccccCCCCCCccccccccc--cchhhhhhhhhhhHHH
Confidence            9999999977 899999999999999999999998877 3222221     12334654432  2234456677778889


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhcccccc-----------------------------------------------------
Q psy7555         155 VIPFFIITFCYVRICMIVIKSGMSASR-----------------------------------------------------  181 (322)
Q Consensus       155 ~~p~~i~~~~y~~i~~~~~~~~~~~~~-----------------------------------------------------  181 (322)
                      ++|+++++++|.+|+++++++.+....                                                     
T Consensus       215 ~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (510)
T 4grv_A          215 LFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVIT  294 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECCCSSSHHHHHHSCCC---CCCTTBCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCCCCCCccccccCcCCCCCCCCccc
Confidence            999999999999999999864320000                                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy7555         182 --------------------------------------------------------------------------------  181 (322)
Q Consensus       182 --------------------------------------------------------------------------------  181 (322)
                                                                                                      
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (510)
T 4grv_A          295 KDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLNNKRWDEAAVNLAKSRWY  374 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCHHHHHHHHHSSCSC
T ss_pred             CCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCCCccccccccCCCccccccccccccc
Confidence                                                                                            


Q ss_pred             -------------------chHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccccc-------hhhhHH
Q psy7555         182 -------------------HAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYIT-------PLSSMI  235 (322)
Q Consensus       182 -------------------~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~-------~~~~~i  235 (322)
                                         .....+..++|+|++|++++++++|++||+||++..++..+.......       .++..+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~  454 (510)
T 4grv_A          375 NQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYML  454 (510)
T ss_dssp             CSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHH
T ss_pred             ccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHH
Confidence                               000011235678999999999999999999999999988774433222       245567


Q ss_pred             HHHHHHhhcchhhhhhhccChhHHHHHHHhhccCCCCC
Q psy7555         236 PALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKD  273 (322)
Q Consensus       236 ~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~~~  273 (322)
                      ..+++++||++||+||+++|++||++++++++|++++.
T Consensus       455 ~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~~~  492 (510)
T 4grv_A          455 TNALAYASSAINPILYNLVSANFRQVFLSTLACLCPGW  492 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCCC------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCC
Confidence            88999999999999999999999999999998765443
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 322
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 4e-16
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.8 bits (185), Expect = 4e-16
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 64  GTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYV 123
           G +++ +L  +A++RY VV  P+   +   N + + + F W   +   + P +    RY+
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTW-VMALACAAPPLVGWSRYI 179

Query: 124 PEGFLTSCSFDY--LASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASR 181
           PEG   SC  DY     +   + F++  F   ++IP  +I FCY ++   V ++      
Sbjct: 180 PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE 239

Query: 182 HAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCK 241
            A  QK      R+ I+   ++  + I W PYA +A            P+   IPA F K
Sbjct: 240 SATTQKAEKEVTRMVII---MVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAK 296

Query: 242 AASCIDPYIYAITHPRFKRELIKMFC 267
            ++  +P IY + + +F+  ++   C
Sbjct: 297 TSAVYNPVIYIMMNKQFRNCMVTTLC 322

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-36  Score=261.08  Aligned_cols=253  Identities=25%  Similarity=0.513  Sum_probs=204.5

Q ss_pred             ceeeehhhhHhhhhhc-cccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555           2 TTYILDLNTSILLPAL-CMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY   80 (322)
Q Consensus         2 ~~~i~nLai~Dll~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~   80 (322)
                      |++++|||++|++.++ ..|..+...+               .+.|..+...|+...++...+..+++++++++++|||.
T Consensus        73 ~~~l~nLaiaDll~~~~~~~~~~~~~~---------------~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~  137 (348)
T d1u19a_          73 NYILLNLAVADLFMVFGGFTTTLYTSL---------------HGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYV  137 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHH---------------HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhc---------------cCccccCchhhhhhhhccccceeeecchhhhhhcccce
Confidence            6789999999998644 6777665433               35688889999999999999999999999999999999


Q ss_pred             eeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccc--cccccchhhhhhhhhhhhhhh
Q psy7555          81 VVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLA--SDVWTKGFILTFFCAAWVIPF  158 (322)
Q Consensus        81 ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~~~~~~~~~p~  158 (322)
                      +|++|++|+..++++....++.+|.+++++..++.+. ......+.....|......  .......+......+.+++|+
T Consensus       138 ~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~  216 (348)
T d1u19a_         138 VVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPL  216 (348)
T ss_dssp             HHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTT-SSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHH
T ss_pred             eeeccccccccccccccccceeeehhhhheecccccc-cceeccCCcccccccccccccccccchhhHHHHHHHHHHHHH
Confidence            9999999977788888888899999999999988777 4444443333344433322  223345566777788889999


Q ss_pred             hhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccccchhhhHHHHH
Q psy7555         159 FIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPAL  238 (322)
Q Consensus       159 ~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~  238 (322)
                      +++.++|.++.++++++.++.++.   .++.++++|+++++++++++|++||+|+.+..++...............+..+
T Consensus       217 ~i~~~~y~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~  293 (348)
T d1u19a_         217 IVIFFCYGQLVFTVKEAAAQQQES---ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF  293 (348)
T ss_dssp             HHHHHHHTTTTTSSCSCCCSSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccccccchh---hhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHH
Confidence            999999999998887766544332   34456788999999999999999999999998887776666666677788899


Q ss_pred             HHHhhcchhhhhhhccChhHHHHHHHhhccCCCCC
Q psy7555         239 FCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKD  273 (322)
Q Consensus       239 l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~~~  273 (322)
                      +..+|+++||+||++++++||+++++++||++++.
T Consensus       294 l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~~~  328 (348)
T d1u19a_         294 FAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL  328 (348)
T ss_dssp             HGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCCT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999998776544