Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ T+K LD+E Y L + +NMAG +V+I+D NDN P F + + G++SE
Sbjct: 1710 GLISTQKRLDHEKVSSYQLKIRGSNMAGVFTEVVALVYIIDENDNAPAFLKSTFVGHISE 1769
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
AAP+ +L+L + PLVIRA D D E N+LL
Sbjct: 1770 AAPLHSLILGEDNSPLVIRASDSDQEANSLL 1800
Plays a role in the migration of epidermal cells (By similarity). May modulate the extracellular space surronding parallel fibers of cerebellar during development.
Required for the planar polarity of actin filament orientation at the basal side of ovarian follicle cells. Required for proper egg chamber shape; elongation of the egg chamber during oogenesis.
Score = 56.6 bits (137), Expect = 7e-12
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHIL 59
+ LF+I P G + T KPLD E Y L+VTAT+ G + +V + +L
Sbjct: 39 GNEDGLFSI-----DPSTGEITTAKPLDREEQSSYTLTVTATDGGGPPLSSTATVTITVL 93
Query: 60 DRNDN 64
D NDN
Sbjct: 94 DVNDN 98
Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98
Score = 55.8 bits (135), Expect = 1e-11
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTP 66
G + T KPLD E Y L+V AT+ G + +V + +LD NDN P
Sbjct: 33 GEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81
Cadherin_pro: Cadherin prodomain like; InterPro: I
81.74
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]
Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]
Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]
Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins
Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria
They have two conserved sequence motifs: AGN and GMT.
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion
They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 49 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 103
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 104 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 142
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 48 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 102
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 103 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 141
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 49 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 103
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 104 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 142
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 49 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 103
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 104 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 142
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 46 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 100
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 101 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 139
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDR 61
PV +F I + G L +PLD EA Y L A + G +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD E Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V E A G V+ + A D D + N
Sbjct: 102 NDNKPEFTQEVFKGSVMEGALPGTSVME-------VTATDADDDVN 140
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
G + K LD E +Y L A N + V I+ I D NDN P FT+ YT
Sbjct: 55 GDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTAT 114
Query: 77 VSEAAPIGALVLTNTS 92
V E A +G V+ T+
Sbjct: 115 VPEMADVGTFVVQVTA 130
Score = 87.7 bits (218), Expect = 2e-22
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 15 LHPPYGVLLTKKP-LDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFT 69
+ P ++ T P +D EA Y + + A +M G ++ V + D NDN P F
Sbjct: 157 IEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFA 216
Query: 70 QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Q Y V E +G + ++A D+D NA
Sbjct: 217 QSLYHFSVPEDVVLGTAIGR-------VKANDQDIGENAQS 250
Score = 82.7 bits (205), Expect = 2e-20
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRN 62
+F I + G + K LD E Y L+ A + K + I+ + D N
Sbjct: 46 TIFQI-----NDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDIN 100
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
DN P F Y V E + +G V + A D D
Sbjct: 101 DNAPEFLNGPYHATVPEMSILGTSVTN-------VTATDADDPVY 138
Score = 84.7 bits (210), Expect = 6e-22
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDR 61
P F I + G + + LD E Y L V T+ +G + V ++D+
Sbjct: 47 PKGTFRI-----NENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET--NALL 110
NDN P F + Y G+V E +P G V+ + A D D NALL
Sbjct: 102 NDNRPIFREGPYIGHVMEGSPTGTTVMR-------MTAFDADDPATDNALL 145
Score = 77.0 bits (190), Expect = 5e-18
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--L 59
P +F I +P G L KPLD E ++L A ++ G + + + I +
Sbjct: 45 QPPTGIFII-----NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVI 99
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET--NALL 110
D NDN P F + G V E + G V+T + A D D N +L
Sbjct: 100 DMNDNRPEFLHQVWNGSVPEGSKPGTYVMT-------VTAIDADDPNALNGML 145
Score = 63.5 bits (155), Expect = 3e-13
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 22/111 (19%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRI----YNLSVTAT--NMAGAKAVCSVIVH 57
P I P G + T LD E+ + YN + A+ + ++ ++
Sbjct: 381 PANWLKI-----DPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIY 435
Query: 58 ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+LD NDN P E + I A D D + NA
Sbjct: 436 LLDINDNAPQVLP--QEAETCETPEPN---------SINITALDYDIDPNA 475
Score = 79.7 bits (197), Expect = 7e-19
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 6 QLFAILKPALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
+F + + GV+ LD E+ Y L V A ++ G ++ + D N
Sbjct: 161 NMFTV-----NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDIN 215
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
DN P F Y G V E A + T ++ D D+
Sbjct: 216 DNAPVFNPSTYQGQVPENEV-NARIAT-------LKVTDDDAPNTP 253
Score = 77.0 bits (190), Expect = 5e-18
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHIL 59
PV +F I G L +PLD EA Y L A + G +++ +
Sbjct: 45 KPPVGVFII-----ERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVT 99
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
D+NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 100 DQNDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVNTY 142
Score = 83.9 bits (208), Expect = 1e-21
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDR 61
PV +F I G L +PLD EA Y L A + G + +++ + D+
Sbjct: 47 PVGVFII-----ERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 84.0 bits (208), Expect = 1e-21
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDR 61
P +F I +P G L KPLD E ++L A ++ G + ++++++D
Sbjct: 47 PTGIFII-----NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET--NALL 110
NDN P F + G V E + G V+T + A D D N +L
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMT-------VTAIDADDPNALNGML 145
Score = 77.0 bits (190), Expect = 5e-18
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 6 QLFAILKPALHPPYGVL-LTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
LF I + GV+ L LD E Y L+V AT++ GA I+ I D N
Sbjct: 167 NLFTI-----NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 221
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
DN P F YT V E G V + D D
Sbjct: 222 DNAPIFDPKTYTALVPENEI-GFEVQR-------LSVTDLDMPGTP 259
Score = 76.2 bits (188), Expect = 1e-17
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHIL 59
+ P +F I G +L +PLD E Y LS A + G+ + ++++
Sbjct: 51 NPPQGVFRI-----EWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVI 105
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
D+NDN P FTQ + G V E G V+ + A D+D ++L
Sbjct: 106 DQNDNRPKFTQDVFRGSVREGVQPGTQVMA-------VSATDEDDNIDSL 148
Score = 78.4 bits (193), Expect = 2e-18
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 6 QLFAILKPALHPPYGVL-LTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
LF I + GV+ L LD E Y L+V AT++ GA I+ I D N
Sbjct: 316 NLFTI-----NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 370
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
DN P F YT V E G V + D D
Sbjct: 371 DNAPIFDPKTYTALVPENEI-GFEVQR-------LSVTDLDMPGTP 408
Score = 78.0 bits (192), Expect = 2e-18
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHIL 59
+ P +F I G +L +PLD E Y LS A + G+ + ++++
Sbjct: 200 NPPQGVFRI-----EWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVI 254
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
D+NDN P FTQ + G V E G V+ + A D+D +
Sbjct: 255 DQNDNRPKFTQDVFRGSVREGVQPGTQVMA-------VSATDEDDNID 295
Score = 82.0 bits (203), Expect = 6e-21
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRN 62
LF I + G + K LD E +Y L A N + V I+ I D N
Sbjct: 46 DLFII-----NENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDIN 100
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
DN P FT+ YT V E A +G V+ + A D D T
Sbjct: 101 DNEPIFTKDVYTATVPEMADVGTFVVQ-------VTATDADDPTY 138
Score = 81.6 bits (202), Expect = 1e-20
Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRN 62
+F I G + K LD E Y L A + + + IV + D N
Sbjct: 47 TIFVI-----DDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDIN 101
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
DN P F Y V E + +G V+ + A D D T
Sbjct: 102 DNPPEFLHEIYHANVPERSNVGTSVIQ-------VTASDADDPTY 139
Score = 68.9 bits (169), Expect = 3e-15
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 21/104 (20%)
Query: 17 PPYGVLLTKKPLDYE------ATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTP 66
G + KK DYE + + + A VI+ + D ND P
Sbjct: 52 ETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGH--NAGIKYTDNQRVIILVKDVNDEPP 109
Query: 67 YFTQ--LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
YF L V AP V T ++A D D++ N
Sbjct: 110 YFINRPLPMQAVVQLNAPPNTPVFT-------LQARDPDTDHNI 146
Score = 63.0 bits (153), Expect = 2e-13
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYF 68
P + T+ LD E Y L T AGA + V + D +D+ P F
Sbjct: 187 RSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114
Score = 40.4 bits (95), Expect = 7e-06
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
P +F I + G + K LD EA Y L V T+ G + + ++
Sbjct: 44 QEPKGIFKI-----NENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVI 98
Query: 60 D 60
D
Sbjct: 99 D 99
Score = 40.1 bits (94), Expect = 1e-05
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
+ PV +F I G L +PLD E Y L A + G +++ +
Sbjct: 49 TPPVGVFII-----ERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 103
Query: 60 D 60
D
Sbjct: 104 D 104
Score = 40.0 bits (94), Expect = 1e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
P F I + G + + LD E Y L V T+ +G + + V ++
Sbjct: 45 QDPKGTFRI-----NENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVI 99
Query: 60 D 60
D
Sbjct: 100 D 100
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
