Psyllid ID: psy7569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MKLILLMKSGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQAP
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHcccccccEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccccccHHHHccccccEEEccccEEccccccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MKLILLMKsgqlvksedirntvgnipmnwyddlphlgydwsgkkimkpeqsdqlDDFLskmenpnfwiqap
Flexible Loop (DISEMBL)
MKLILLMKSGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQAP
Low Complexity Region (SEG)
MKLILLMKSGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQAP
Disordered region (IsUnstruct)
***ILLMKSGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKK***************************
Disordered Region (DISOPRED)
********************TVGNIPMNWYDDLPHLGYDWSGKKIM******QL*DFLSKMENPNFWIQA*
Disordered Region (DISEMBL)
MKLILLMKSGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQAP
Disordered Region (DISPRO)
*KLILLMKSG*LVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLILLMKSGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q17LZ2	866	Ribosome biogenesis prote	N/A	N/A	0.830	0.068	0.610	2e-18
B4GIU9	785	Ribosome biogenesis prote	N/A	N/A	0.732	0.066	0.711	2e-18
B3MHX6	793	Ribosome biogenesis prote	N/A	N/A	0.732	0.065	0.711	2e-18
Q28XF0	786	Ribosome biogenesis prote	yes	N/A	0.732	0.066	0.711	2e-18
B4KQU8	792	Ribosome biogenesis prote	N/A	N/A	0.732	0.065	0.711	2e-18
B4LKS9	780	Ribosome biogenesis prote	N/A	N/A	0.732	0.066	0.711	2e-18
B4P528	784	Ribosome biogenesis prote	N/A	N/A	0.732	0.066	0.692	6e-18
B4HN85	784	Ribosome biogenesis prote	N/A	N/A	0.732	0.066	0.692	6e-18
B3NLK7	784	Ribosome biogenesis prote	N/A	N/A	0.732	0.066	0.692	6e-18
Q7K0Y1	784	Ribosome biogenesis prote	yes	N/A	0.732	0.066	0.692	6e-18

>sp|Q17LZ2|BOP1_AEDAE Ribosome biogenesis protein BOP1 homolog OS=Aedes aegypti GN=AAEL001169 PE=3 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 9   SGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           +G     EDIRNTVGNIPM+WYD+  H+GYDW G +++KP ++D +DDFL KME+PNFW
Sbjct: 232 AGDTSDEEDIRNTVGNIPMHWYDEYKHIGYDWEGNRLIKPAKTDAIDDFLKKMEDPNFW 290

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Aedes aegypti (taxid: 7159)

>sp|B4GIU9|BOP1_DROPE Ribosome biogenesis protein BOP1 homolog OS=Drosophila persimilis GN=GL17224 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP + DQ+DDFL K+E+PNFW
Sbjct: 158 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIVKPPKGDQIDDFLRKIEDPNFW 209

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila persimilis (taxid: 7234)

>sp|B3MHX6|BOP1_DROAN Ribosome biogenesis protein BOP1 homolog OS=Drosophila ananassae GN=GF11675 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP Q DQ+D+FL K+E+PNFW
Sbjct: 166 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIVKPPQGDQIDEFLRKIEDPNFW 217

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila ananassae (taxid: 7217)

>sp|Q28XF0|BOP1_DROPS Ribosome biogenesis protein BOP1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18610 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP + DQ+DDFL K+E+PNFW
Sbjct: 159 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIVKPPKGDQIDDFLRKIEDPNFW 210

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4KQU8|BOP1_DROMO Ribosome biogenesis protein BOP1 homolog OS=Drosophila mojavensis GN=GI19116 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP + DQ+DDFL K+E+PNFW
Sbjct: 165 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPKGDQIDDFLRKIEDPNFW 216

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila mojavensis (taxid: 7230)

>sp|B4LKS9|BOP1_DROVI Ribosome biogenesis protein BOP1 homolog OS=Drosophila virilis GN=GJ22246 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP + DQ+DDFL K+E+PNFW
Sbjct: 153 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIVKPPKGDQIDDFLRKIEDPNFW 204

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila virilis (taxid: 7244)

>sp|B4P528|BOP1_DROYA Ribosome biogenesis protein BOP1 homolog OS=Drosophila yakuba GN=GE11901 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP Q DQ+D+FL K+E+P+FW
Sbjct: 157 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFW 208

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila yakuba (taxid: 7245)

>sp|B4HN85|BOP1_DROSE Ribosome biogenesis protein BOP1 homolog OS=Drosophila sechellia GN=GM21825 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP Q DQ+D+FL K+E+P+FW
Sbjct: 157 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFW 208

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila sechellia (taxid: 7238)

>sp|B3NLK7|BOP1_DROER Ribosome biogenesis protein BOP1 homolog OS=Drosophila erecta GN=GG21824 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP Q DQ+D+FL K+E+P+FW
Sbjct: 157 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFW 208

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila erecta (taxid: 7220)

>sp|Q7K0Y1|BOP1_DROME Ribosome biogenesis protein BOP1 homolog OS=Drosophila melanogaster GN=CG5033 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP Q DQ+D+FL K+E+P+FW
Sbjct: 157 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFW 208

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
242004496	707	Ribosome biogenesis protein BOP1, putati	0.732	0.073	0.826	1e-19
193591676	663	PREDICTED: ribosome biogenesis protein B	0.732	0.078	0.769	8e-19
307206661	829	Ribosome biogenesis protein BOP1 [Harpeg	0.732	0.062	0.730	1e-17
291239761	391	PREDICTED: block of proliferation 1-like	0.746	0.135	0.716	5e-17
157115331	866	ribosome biogenesis protein bop1 (block	0.830	0.068	0.610	7e-17
350400370	869	PREDICTED: ribosome biogenesis protein B	0.732	0.059	0.711	8e-17
195153359	785	GL17224 [Drosophila persimilis] gi|22962	0.732	0.066	0.711	8e-17
194755739	793	GF11675 [Drosophila ananassae] gi|229621	0.732	0.065	0.711	8e-17
125811205	786	GA18610 [Drosophila pseudoobscura pseudo	0.732	0.066	0.711	8e-17
340717959	826	PREDICTED: ribosome biogenesis protein B	0.732	0.062	0.711	8e-17

>gi|242004496|ref|XP_002423119.1| Ribosome biogenesis protein BOP1, putative [Pediculus humanus corporis] gi|212506065|gb|EEB10381.1| Ribosome biogenesis protein BOP1, putative [Pediculus humanus corporis]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 47/52 (90%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPMNWYDD PHLGYDW GKKI KPE  DQL++FLSKME+PN+W
Sbjct: 78  EDIRNTVGNIPMNWYDDYPHLGYDWDGKKIFKPENRDQLEEFLSKMEDPNYW 129

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193591676|ref|XP_001952114.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
          EDIRNTVGNIPMNWYD+ PH+GYDW G KI+KPE+ DQLD+F+ KMENP+FW
Sbjct: 35 EDIRNTVGNIPMNWYDEYPHVGYDWDGNKIIKPERGDQLDNFMEKMENPDFW 86

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206661|gb|EFN84633.1| Ribosome biogenesis protein BOP1 [Harpegnathos saltator]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 46/52 (88%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIP+ WYDD  H+GYDW GKKI+KPE+ D+LD+FL +ME+PNFW
Sbjct: 201 EDIRNTVGNIPLKWYDDYDHVGYDWEGKKILKPEKGDELDNFLKRMEDPNFW 252

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291239761|ref|XP_002739790.1| PREDICTED: block of proliferation 1-like [Saccoglossus kowalevskii]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWI 68
           EDIRNTVGNIPM WY+D PH+GYD  GK+I KP Q D+LD+FL+KMENP++WI
Sbjct: 150 EDIRNTVGNIPMQWYNDYPHIGYDLDGKRISKPAQGDELDEFLNKMENPDYWI 202

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|157115331|ref|XP_001658204.1| ribosome biogenesis protein bop1 (block of proliferation 1 protein) [Aedes aegypti] gi|122107046|sp|Q17LZ2.1|BOP1_AEDAE RecName: Full=Ribosome biogenesis protein BOP1 homolog gi|108883527|gb|EAT47752.1| AAEL001169-PA [Aedes aegypti]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 9   SGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           +G     EDIRNTVGNIPM+WYD+  H+GYDW G +++KP ++D +DDFL KME+PNFW
Sbjct: 232 AGDTSDEEDIRNTVGNIPMHWYDEYKHIGYDWEGNRLIKPAKTDAIDDFLKKMEDPNFW 290

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400370|ref|XP_003485813.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Bombus impatiens]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 46/52 (88%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM WYD+  H+GYDW GKKI+KP++ DQLD+FL +ME+P+FW
Sbjct: 242 EDIRNTVGNIPMKWYDEYDHIGYDWDGKKIIKPQKGDQLDNFLKRMEDPDFW 293

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153359|ref|XP_002017595.1| GL17224 [Drosophila persimilis] gi|229621675|sp|B4GIU9.1|BOP1_DROPE RecName: Full=Ribosome biogenesis protein BOP1 homolog gi|194113391|gb|EDW35434.1| GL17224 [Drosophila persimilis]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP + DQ+DDFL K+E+PNFW
Sbjct: 158 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIVKPPKGDQIDDFLRKIEDPNFW 209

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755739|ref|XP_001960141.1| GF11675 [Drosophila ananassae] gi|229621671|sp|B3MHX6.1|BOP1_DROAN RecName: Full=Ribosome biogenesis protein BOP1 homolog gi|190621439|gb|EDV36963.1| GF11675 [Drosophila ananassae]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP Q DQ+D+FL K+E+PNFW
Sbjct: 166 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIVKPPQGDQIDEFLRKIEDPNFW 217

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125811205|ref|XP_001361787.1| GA18610 [Drosophila pseudoobscura pseudoobscura] gi|121987837|sp|Q28XF0.1|BOP1_DROPS RecName: Full=Ribosome biogenesis protein BOP1 homolog gi|54636963|gb|EAL26366.1| GA18610 [Drosophila pseudoobscura pseudoobscura]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP + DQ+DDFL K+E+PNFW
Sbjct: 159 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIVKPPKGDQIDDFLRKIEDPNFW 210

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717959|ref|XP_003397441.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Bombus terrestris]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 46/52 (88%)

Query: 16  EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
           EDIRNTVGNIPM WYD+  H+GYDW GKKI+KP++ DQLD+FL +ME+P+FW
Sbjct: 198 EDIRNTVGNIPMKWYDEYDHIGYDWDGKKIIKPQKGDQLDNFLKRMEDPDFW 249

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
FB|FBgn0028744	784	CG5033 [Drosophila melanogaste	0.732	0.066	0.692	1.2e-17
UNIPROTKB|Q7T0W1	728	bop1-a "Ribosome biogenesis pr	0.732	0.071	0.716	7.6e-17
UNIPROTKB|Q7ZXX9	728	bop1-b "Ribosome biogenesis pr	0.732	0.071	0.716	7.6e-17
ZFIN|ZDB-GENE-030219-109	785	bop1 "block of proliferation 1	0.732	0.066	0.698	1.8e-16
UNIPROTKB|A4IHS2	729	bop1 "Ribosome biogenesis prot	0.732	0.071	0.698	2.6e-16
UNIPROTKB|E9PIF8	312	BOP1 "Ribosome biogenesis prot	0.788	0.179	0.576	3.3e-16
UNIPROTKB|J9P261	432	BOP1 "Uncharacterized protein"	0.732	0.120	0.603	2.3e-15
RGD|1310589	731	Bop1 "block of proliferation 1	0.732	0.071	0.641	2.4e-15
UNIPROTKB|Q96Q25	634	KM-PA-2 "Uncharacterized prote	0.788	0.088	0.576	3.1e-15
UNIPROTKB|Q14137	746	BOP1 "Ribosome biogenesis prot	0.788	0.075	0.576	4.1e-15

FB|FBgn0028744 CG5033 [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
             EDIRNTVGNIPM+WYD+  H+GYDW  KKI+KP Q DQ+D+FL K+E+P+FW
Sbjct:   157 EDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFW 208

GO:0005730 "nucleolus" evidence=ISS

GO:0043021 "ribonucleoprotein complex binding" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q7T0W1 bop1-a "Ribosome biogenesis protein bop1-A" [Xenopus laevis (taxid:8355)]

 Score = 218 (81.8 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 38/53 (71%), Positives = 45/53 (84%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW 67
             EDIRNTVGNIPM WY DLPH+GYD  G+KI KP +S DQL++FL KMENP++W
Sbjct:   112 EDIRNTVGNIPMEWYKDLPHIGYDLDGRKIFKPLRSKDQLEEFLDKMENPDYW 164

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

UNIPROTKB|Q7ZXX9 bop1-b "Ribosome biogenesis protein bop1-B" [Xenopus laevis (taxid:8355)]

 Score = 218 (81.8 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 38/53 (71%), Positives = 45/53 (84%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW 67
             EDIRNTVGNIPM WY DLPH+GYD  G+KI KP +S DQL++FL KMENP++W
Sbjct:   112 EDIRNTVGNIPMEWYKDLPHIGYDLDGRKIFKPLRSKDQLEEFLDKMENPDYW 164

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

ZFIN|ZDB-GENE-030219-109 bop1 "block of proliferation 1" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 37/53 (69%), Positives = 42/53 (79%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKP-EQSDQLDDFLSKMENPNFW 67
             EDIRNTVGNIPM WY D PH+GYD  GKKI KP    D+LD+FL KMENP++W
Sbjct:   168 EDIRNTVGNIPMEWYKDYPHIGYDLDGKKIFKPIRNKDELDEFLDKMENPDYW 220

GO:0006364 "rRNA processing" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|A4IHS2 bop1 "Ribosome biogenesis protein bop1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 213 (80.0 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 37/53 (69%), Positives = 43/53 (81%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW 67
             EDIRNTVGNIPM WY D PH+GYD  G+KI KP +S DQL+ FL KMENP++W
Sbjct:   113 EDIRNTVGNIPMEWYQDFPHIGYDLDGRKIFKPLRSKDQLEQFLDKMENPDYW 165

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

UNIPROTKB|E9PIF8 BOP1 "Ribosome biogenesis protein BOP1" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW--IQAP 71
             EDIRNTVGN+P+ WYDD PH+GYD  G++I KP ++ D+LD FL KM++P++W  +Q P
Sbjct:    60 EDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQDP 118

GO:0006364 "rRNA processing" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

UNIPROTKB|J9P261 BOP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 32/53 (60%), Positives = 44/53 (83%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW 67
             EDIRNTVGN+P+ WYD+ PH+GYD  G++I KP ++ D+LD FL KM+NP++W
Sbjct:   166 EDIRNTVGNVPLEWYDNFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDNPDYW 218

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

RGD|1310589 Bop1 "block of proliferation 1" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 34/53 (64%), Positives = 44/53 (83%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW 67
             EDIRNTVGN+P+ WYDD PH+GYD  GK+I KP ++ D+LD FL KM++P+FW
Sbjct:   115 EDIRNTVGNVPLAWYDDFPHVGYDLDGKRIYKPLRTRDELDQFLDKMDDPDFW 167

GO:0000448 "cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA;ISO

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA;ISO

GO:0051726 "regulation of cell cycle" evidence=IEA;ISO;ISS

GO:0070545 "PeBoW complex" evidence=ISO;ISS

UNIPROTKB|Q96Q25 KM-PA-2 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW--IQAP 71
             EDIRNTVGN+P+ WYDD PH+GYD  G++I KP ++ D+LD FL KM++P++W  +Q P
Sbjct:    18 EDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQDP 76

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q14137 BOP1 "Ribosome biogenesis protein BOP1" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query:    16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQS-DQLDDFLSKMENPNFW--IQAP 71
             EDIRNTVGN+P+ WYDD PH+GYD  G++I KP ++ D+LD FL KM++P++W  +Q P
Sbjct:   130 EDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQDP 188

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0070545 "PeBoW complex" evidence=IDA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0008283 "cell proliferation" evidence=NAS

GO:0042254 "ribosome biogenesis" evidence=IC;NAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS34	ERB1_CRYNJ	No assigned EC number	0.5737	0.8591	0.0734	yes	N/A
A0JMQ0	BOP1_DANRE	No assigned EC number	0.6981	0.7323	0.0669	yes	N/A
Q9U2A9	BOP1_CAEEL	No assigned EC number	0.5576	0.7323	0.0771	yes	N/A
P97452	BOP1_MOUSE	No assigned EC number	0.6078	0.7042	0.0683	yes	N/A
Q14137	BOP1_HUMAN	No assigned EC number	0.5762	0.7887	0.0750	yes	N/A
B2AY28	ERB1_PODAN	No assigned EC number	0.5208	0.6760	0.0612	yes	N/A
Q28XF0	BOP1_DROPS	No assigned EC number	0.7115	0.7323	0.0661	yes	N/A
Q4WTI3	ERB1_ASPFU	No assigned EC number	0.5208	0.6760	0.0603	yes	N/A
A4IHS2	BOP1_XENTR	No assigned EC number	0.6981	0.7323	0.0713	yes	N/A
Q7K0Y1	BOP1_DROME	No assigned EC number	0.6923	0.7323	0.0663	yes	N/A
Q7PTC5	BOP1_ANOGA	No assigned EC number	0.6101	0.8309	0.0682	yes	N/A
Q562C2	BOP1_RAT	No assigned EC number	0.6274	0.7042	0.0683	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
pfam08145	259	pfam08145, BOP1NT, BOP1NT (NUC169) domain	1e-17
smart01035	264	smart01035, BOP1NT, BOP1NT (NUC169) domain	2e-16

>gnl|CDD|219727 pfam08145, BOP1NT, BOP1NT (NUC169) domain

 Score = 73.0 bits (180), Expect = 1e-17
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 30 YDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
          YDD PH+GYD  GKKIMKP   D LDDFL K+++PN W
Sbjct: 1  YDDYPHIGYDIDGKKIMKPATGDALDDFLDKIDDPNAW 38

This N terminal domain is found in BOP1-like WD40 proteins. Length = 259

>gnl|CDD|214986 smart01035, BOP1NT, BOP1NT (NUC169) domain

 Score = 70.0 bits (172), Expect = 2e-16
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query: 30 YDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
          YDD PH+GYD  GKKIMKP + D LD FL  +++PNFW
Sbjct: 1  YDDYPHIGYDIDGKKIMKPAKGDALDKFLDSIDDPNFW 38

This N terminal domain is found in BOP1-like WD40 proteins. Length = 264

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG0650|consensus	733		99.95
PF08145	260	BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR01295	99.79

>KOG0650|consensus

Probab=99.95  E-value=1.4e-28  Score=200.55  Aligned_cols=62  Identities=53%  Similarity=1.057  Sum_probs=59.6

Q ss_pred             CCCCcccccccCcccccccccccCCCcccccCCCCeeccCCCccHHHHHHHhCCCCCCCeeC
Q psy7569           9 SGQLVKSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQA   70 (71)
Q Consensus         9 ~~DssdeE~~~NtiGnVPl~WYdd~~HIGYDidGkkI~K~~~~d~lD~fL~~~ddp~~WrtV   70 (71)
                      ++||||||+++||||||||+|||+++|||||++||||+||+++++||+||++||+|++||+|
T Consensus       110 ~~~sSde~d~rntvgnipl~wYdd~~hIgYD~~gkkI~kp~k~~~ld~fl~~iedp~~Wr~v  171 (733)
T KOG0650|consen  110 EEDSSDEEDTRNTVGNIPLKWYDDEKHIGYDIDGKKITKPAKGDELDSFLAKIEDPDYWRKV  171 (733)
T ss_pred             cccCcchhhhhcccCCcccccccccccccccccccEecCCCccchHHHHHHhhcCcchhccc
Confidence            35788899999999999999999999999999999999999999999999999999999997

>PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.79  E-value=3.6e-20  Score=138.24  Aligned_cols=42  Identities=57%  Similarity=1.151  Sum_probs=40.9

Q ss_pred             ccCCCcccccCCCCeeccCCCccHHHHHHHhCCCCCCCeeCC
Q psy7569          30 YDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQAP   71 (71)
Q Consensus        30 Ydd~~HIGYDidGkkI~K~~~~d~lD~fL~~~ddp~~WrtV~   71 (71)
                      |++|+|||||++||||+|++++|+||+||+++|||++||||.
T Consensus         1 Ydd~~HIGYDi~GkkI~K~~~~d~LD~fL~~~ddp~~Wrtv~   42 (260)
T PF08145_consen    1 YDDYPHIGYDIDGKKIMKPAKGDALDKFLDSMDDPNYWRTVY   42 (260)
T ss_pred             CCCCCccCcCCCCCEecCCCchhHHHHHHHhccCccCCceeE
Confidence            899999999999999999999999999999999999999983

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00