Psyllid ID: psy7609

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MKHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNAQNWQGYGYSTTGQTGTTGQTGQSTQGASKMISAADFESGGWWFESKSRYKISLVQLFVRFLGVYLKNQ
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHccccccccEEEEEEEccHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHcHcccccEEEEEEEccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHEccc
Coil and Loop (DISEMBL)
mkheyklvsinseplrdhikgsWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHRekegkddvppdnvILEMKanfklpevgelfEEVTYIELQHPEAEKIIDEYnknadgtynypqnwnaqnwqgygysttgqtgttgqtgqstqgaSKMISaadfesggwwfesksRYKISLVQLFVRFLGVYLKNQ
Flexible Loop (DISEMBL)
MKHEYKLVsinseplrdhikgswvQVVDKTTKCLNRLLelgfsrrrnyildqTNVYVSAQKRKMRSyfgfqrkaivvvpTNEDYLARLEMHrekegkddvppdNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNAQNWQGYGYSTTGQTGTTGQTGQSTQGASKMISAADFESGGWWFESKSRYKISLVQLFVRFLGVYLKNQ
Low Complexity Region (SEG)
MKHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNAQNWqgygysttgqtgttgqtgqstqgASKMISAADFESGGWWFESKSRYKISLVQLFVRFLGVYLKNQ
Disordered region (IsUnstruct)
*************PLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARL***************NVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNAQNWQGYGYST**********************AADFESGGWWFESKSRYKISLVQLFVRFLGVYL***
Disordered Region (DISOPRED)
***EYKLVS***********GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDY****************PPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID*********************************************************************SLVQLFVRFLGVYLKN*
Disordered Region (DISEMBL)
MKHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNAQNWQGYGYSTTG****************KMISAADFESGGWWFESKSRYKISLVQLFVRFLGVYLKNQ
Disordered Region (DISPRO)
*KHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYN********************************************SGGWWFESKSRYKISLVQLFVRFLGVYLKNQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNAQNWQGYGYSTTGQTGTTGQTGQSTQGASKMISAADFESGGWWFESKSRYKISLVQLFVRFLGVYLKNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q8VDM6	859	Heterogeneous nuclear rib	yes	N/A	0.539	0.142	0.540	2e-34
Q9BUJ2	856	Heterogeneous nuclear rib	yes	N/A	0.539	0.142	0.540	3e-34
Q00839	825	Heterogeneous nuclear rib	no	N/A	0.530	0.145	0.475	3e-29
Q8VEK3	800	Heterogeneous nuclear rib	no	N/A	0.530	0.15	0.475	4e-29
Q00PI9	745	Heterogeneous nuclear rib	no	N/A	0.526	0.159	0.471	3e-25
Q1KMD3	747	Heterogeneous nuclear rib	no	N/A	0.526	0.159	0.471	3e-25

>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus GN=Hnrnpul1 PE=1 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 93/124 (75%), Gaps = 2/124 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 476 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 535

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct: 536 DEDLKDRTVKRTDEEGKDV--PDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 593

Query: 141 EYNK 144
           +YN+
Sbjct: 594 QYNE 597

Acts as a basic transcriptional regulator. Represses basic transcription driven by several virus and cellular promoters. When associated with BRD7, activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Plays also a role in mRNA processing and transport. Binds avidly to poly(G) and poly(C) RNA homopolymers in vitro.
Mus musculus (taxid: 10090)

>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 93/124 (75%), Gaps = 2/124 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 475 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 534

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct: 535 DEDLKDRTIKRTDEEGKDV--PDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 592

Query: 141 EYNK 144
           +YN+
Sbjct: 593 QYNE 596

Acts as a basic transcriptional regulator. Represses basic transcription driven by several virus and cellular promoters. When associated with BRD7, activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Plays also a role in mRNA processing and transport. Binds avidly to poly(G) and poly(C) RNA homopolymers in vitro.

Homo sapiens (taxid: 9606)

>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 86/122 (70%), Gaps = 2/122 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G    ++ +  +CL + +E+   ++RN+ILDQTNV  +AQ+RKM  + GFQRKA+VV P 
Sbjct: 550 GKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPK 609

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +EDY  R +   E EGKD   P++ +L+MK NF LPEV E F+E+TY+ELQ  EA+K+++
Sbjct: 610 DEDYKQRTQKKAEVEGKD--LPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLE 667

Query: 141 EY 142
           +Y
Sbjct: 668 QY 669

Component of the CRD-mediated complex that promotes MYC mRNA stabilization. Binds to pre-mRNA. Has high affinity for scaffold-attached region (SAR) DNA. Binds to double- and single-stranded DNA and RNA.

Homo sapiens (taxid: 9606)

>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein U OS=Mus musculus GN=Hnrnpu PE=1 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 86/122 (70%), Gaps = 2/122 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G    ++ +  +CL + +E+   ++RN+ILDQTNV  +AQ+RKM  + GFQRKA+VV P 
Sbjct: 526 GKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPK 585

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +EDY  R +   E EGKD   P++ +L+MK NF LPEV E F+E+TY+ELQ  EA+K+++
Sbjct: 586 DEDYKQRTQKKAEVEGKD--LPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLE 643

Query: 141 EY 142
           +Y
Sbjct: 644 QY 645

Component of the CRD-mediated complex that promotes MYC mRNA stabilization. Binds to pre-mRNA. Has high affinity for scaffold-attached region (SAR) DNA. Binds to double- and single-stranded DNA and RNA.

Mus musculus (taxid: 10090)

>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Mus musculus GN=Hnrnpul2 PE=1 SV=2

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 26  VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYL 85
           +V + ++CL++L+++    +RN+ILDQ NVY S Q+RK+  +  F RK +VVVP  ED+ 
Sbjct: 509 LVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWK 568

Query: 86  ARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKN 145
            RLE+ +E EG DDV P++++LEMKANF LPE  +  +EVTY EL+  EA+ I+ +Y + 
Sbjct: 569 RRLELRKEVEG-DDV-PESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEE 626

Query: 146 A 146
           A
Sbjct: 627 A 627

Mus musculus (taxid: 10090)

>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo sapiens GN=HNRNPUL2 PE=1 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 26  VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYL 85
           +V + ++CL++L+++    +RN+ILDQ NVY S Q+RK+  +  F RK +VVVP  ED+ 
Sbjct: 511 LVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWK 570

Query: 86  ARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKN 145
            RLE+ +E EG DDV P++++LEMKANF LPE  +  +EVTY EL+  EA+ I+ +Y + 
Sbjct: 571 KRLELRKEVEG-DDV-PESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEE 628

Query: 146 A 146
           A
Sbjct: 629 A 629

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
242008287	1102	E1b-55kD-associated protein, putative [P	0.570	0.117	0.549	9e-35
405959264	754	Heterogeneous nuclear ribonucleoprotein	0.615	0.184	0.496	1e-34
443702657	888	hypothetical protein CAPTEDRAFT_221963 [	0.615	0.156	0.510	3e-34
260818749	947	hypothetical protein BRAFLDRAFT_79407 [B	0.561	0.134	0.542	1e-33
327276387	798	PREDICTED: heterogeneous nuclear ribonuc	0.539	0.152	0.556	4e-33
321461064	658	hypothetical protein DAPPUDRAFT_216229 [	0.597	0.205	0.518	5e-33
326668186	877	PREDICTED: heterogeneous nuclear ribonuc	0.539	0.139	0.556	6e-33
20379977	651	Hnrpul1 protein [Mus musculus]	0.539	0.187	0.540	9e-33
4884358	502	hypothetical protein [Homo sapiens]	0.539	0.243	0.540	9e-33
50927444	759	Hnrpul1 protein [Mus musculus]	0.539	0.160	0.540	1e-32

>gi|242008287|ref|XP_002424938.1| E1b-55kD-associated protein, putative [Pediculus humanus corporis] gi|212508552|gb|EEB12200.1| E1b-55kD-associated protein, putative [Pediculus humanus corporis]

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 95/131 (72%), Gaps = 2/131 (1%)

Query: 14  PLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRK 73
           P + +  G W  +++K TKCLN LLE+G  RRRNYI+DQTNVY +AQ+RKMR + GF R+
Sbjct: 631 PRKRNYSGRWEVLIEKCTKCLNTLLEMGGYRRRNYIIDQTNVYPAAQRRKMRGFEGFVRR 690

Query: 74  AIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHP 133
           A+V+VPT+E+  +R+     +EGKD   PD+ ILEMKANF LPE GE+F EV Y ELQ  
Sbjct: 691 AVVIVPTDEELKSRIAKREAEEGKD--VPDSAILEMKANFALPEKGEIFNEVVYTELQEA 748

Query: 134 EAEKIIDEYNK 144
           EA  ++ +YNK
Sbjct: 749 EARALVAQYNK 759

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405959264|gb|EKC25317.1| Heterogeneous nuclear ribonucleoprotein U-like protein 1 [Crassostrea gigas]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 101/141 (71%), Gaps = 2/141 (1%)

Query: 14  PLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRK 73
           P + +  G W  ++DK+TKCLN+LLE+   ++RNYI+DQTNVY SA++RKM+ + GFQRK
Sbjct: 507 PRKKNYAGRWDVLIDKSTKCLNKLLEIAAGKKRNYIIDQTNVYASARRRKMQPFEGFQRK 566

Query: 74  AIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHP 133
           A+V+VPT EDY  RLE+  ++EGKD   P++ ILEMKANF LPE G LF+ + Y+E +  
Sbjct: 567 AVVIVPTEEDYKTRLELQGKEEGKD--VPEHAILEMKANFSLPEEGVLFDSIEYVEQELE 624

Query: 134 EAEKIIDEYNKNADGTYNYPQ 154
             ++++++YNK        PQ
Sbjct: 625 ATKELVEKYNKEGKDNLPPPQ 645

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443702657|gb|ELU00578.1| hypothetical protein CAPTEDRAFT_221963 [Capitella teleta]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 103/141 (73%), Gaps = 2/141 (1%)

Query: 14  PLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRK 73
           P + +  G W  ++DK+TKCLNRLL++   ++RNYILDQTNVY  AQ+RKMR + GFQRK
Sbjct: 532 PRKKNYGGRWDLLIDKSTKCLNRLLDIASKKKRNYILDQTNVYPRAQRRKMRPFEGFQRK 591

Query: 74  AIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHP 133
           AIV+VP +E+++ R E   ++EGKD   PD  +LEMKANF+LP+VG+LF+ V ++EL   
Sbjct: 592 AIVIVPADEEFVRRCEEREKEEGKD--VPDGAVLEMKANFELPDVGDLFDAVEFVELDRE 649

Query: 134 EAEKIIDEYNKNADGTYNYPQ 154
           EA+K++ +YN+ A      P+
Sbjct: 650 EAQKVVSKYNEEAKAALPPPE 670

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|260818749|ref|XP_002604545.1| hypothetical protein BRAFLDRAFT_79407 [Branchiostoma floridae] gi|229289872|gb|EEN60556.1| hypothetical protein BRAFLDRAFT_79407 [Branchiostoma floridae]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 91/129 (70%), Gaps = 2/129 (1%)

Query: 14  PLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRK 73
           P + +  G W  ++   TKCLNR++E+   ++RN+ILDQTNVY SA++RKM  + GFQRK
Sbjct: 639 PRKRNYAGRWDVLIQTATKCLNRIIEIACRKKRNFILDQTNVYASARRRKMTPFEGFQRK 698

Query: 74  AIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHP 133
           AIVVVPT+E++  R E     EGK+   PD  +LEMKANF LP  G+LFE V YIELQ  
Sbjct: 699 AIVVVPTDEEFKKRCEKRTSVEGKE--VPDEAVLEMKANFTLPHTGDLFETVEYIELQEA 756

Query: 134 EAEKIIDEY 142
           EAEK++D Y
Sbjct: 757 EAEKLVDTY 765

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327276387|ref|XP_003222951.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Anolis carolinensis]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 91/124 (73%), Gaps = 2/124 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 424 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 483

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +ED   R     ++EGKD   PD+ +LEMKANF LPE G+  + V YIELQ  EAEK++ 
Sbjct: 484 DEDLKDRTIKRTDEEGKDV--PDHAVLEMKANFALPEAGDFLDSVIYIELQRDEAEKLVR 541

Query: 141 EYNK 144
           EYN+
Sbjct: 542 EYNE 545

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321461064|gb|EFX72099.1| hypothetical protein DAPPUDRAFT_216229 [Daphnia pulex]

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 95/137 (69%), Gaps = 2/137 (1%)

Query: 10  INSEPLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFG 69
           +N  P R +  G W  +++K T+CLN LLE+   RRRNYILDQTNVY +AQKRKM  + G
Sbjct: 316 VNGLPRRKNYTGRWEVLIEKCTRCLNILLEIAAKRRRNYILDQTNVYPTAQKRKMSYFSG 375

Query: 70  FQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIE 129
           F+RKA+V+VPT ED   R E   ++EGKD   PD+ ++EMKANFK+P V + F EV + E
Sbjct: 376 FKRKAVVIVPTEEDAKVRAEKRIQEEGKDV--PDSAVMEMKANFKIPSVDDTFSEVEFPE 433

Query: 130 LQHPEAEKIIDEYNKNA 146
           L   EA K+I++Y+  A
Sbjct: 434 LALEEALKVIEKYSTEA 450

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326668186|ref|XP_003198760.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Danio rerio]

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 92/124 (74%), Gaps = 2/124 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 537 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 596

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +ED   R     ++EGKD   PD+ +LEMKANF LP+VGE  +EV +IELQ  EAE +I 
Sbjct: 597 DEDLKDRTLKRTDEEGKD--VPDHAVLEMKANFVLPDVGEFLDEVRFIELQKEEAEALIK 654

Query: 141 EYNK 144
           +YN+
Sbjct: 655 QYNE 658

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|20379977|gb|AAH27844.1| Hnrpul1 protein [Mus musculus]

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 93/124 (75%), Gaps = 2/124 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 268 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 327

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct: 328 DEDLKDRTVKRTDEEGKDV--PDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 385

Query: 141 EYNK 144
           +YN+
Sbjct: 386 QYNE 389

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4884358|emb|CAB43291.1| hypothetical protein [Homo sapiens]

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 93/124 (75%), Gaps = 2/124 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 121 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 180

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct: 181 DEDLKDRTIKRTDEEGKDV--PDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 238

Query: 141 EYNK 144
           +YN+
Sbjct: 239 QYNE 242

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50927444|gb|AAH78642.1| Hnrpul1 protein [Mus musculus]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 93/124 (75%), Gaps = 2/124 (1%)

Query: 21  GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
           G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 376 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 435

Query: 81  NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
           +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct: 436 DEDLKDRTVKRTDEEGKDV--PDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 493

Query: 141 EYNK 144
           +YN+
Sbjct: 494 QYNE 497

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
UNIPROTKB|J9JHA9	756	HNRNPUL1 "Uncharacterized prot	0.539	0.161	0.540	5.4e-32
UNIPROTKB|B7Z4B8	767	HNRNPUL1 "cDNA FLJ56481, highl	0.539	0.159	0.540	5.6e-32
MGI|MGI:2443517	859	Hnrnpul1 "heterogeneous nuclea	0.539	0.142	0.540	5.8e-32
UNIPROTKB|E2RNY1	856	HNRNPUL1 "Uncharacterized prot	0.539	0.142	0.540	7.4e-32
UNIPROTKB|Q9BUJ2	856	HNRNPUL1 "Heterogeneous nuclea	0.539	0.142	0.540	7.4e-32
UNIPROTKB|A4FUC2	858	HNRNPUL1 "Uncharacterized prot	0.539	0.142	0.540	7.4e-32
RGD|1307456	859	Hnrnpul1 "heterogeneous nuclea	0.539	0.142	0.540	7.5e-32
ZFIN|ZDB-GENE-040426-2432	784	hnrnpul1 "heterogeneous nuclea	0.535	0.154	0.516	8.7e-30
UNIPROTKB|F1MFT4	701	HNRNPU "Uncharacterized protei	0.526	0.169	0.471	3.2e-27
UNIPROTKB|J9P6J3	702	HNRNPU "Uncharacterized protei	0.526	0.169	0.471	3.2e-27

UNIPROTKB|J9JHA9 HNRNPUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 5.4e-32, P = 5.4e-32
 Identities = 67/124 (54%), Positives = 93/124 (75%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct:   375 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 434

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct:   435 DEDLKDRTIKRTDEEGKD--VPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 492

Query:   141 EYNK 144
             +YN+
Sbjct:   493 QYNE 496

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|B7Z4B8 HNRNPUL1 "cDNA FLJ56481, highly similar to Heterogeneous nuclear ribonucleoprotein U-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 5.6e-32, P = 5.6e-32
 Identities = 67/124 (54%), Positives = 93/124 (75%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct:   386 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 445

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct:   446 DEDLKDRTIKRTDEEGKD--VPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 503

Query:   141 EYNK 144
             +YN+
Sbjct:   504 QYNE 507

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

MGI|MGI:2443517 Hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 5.8e-32, P = 5.8e-32
 Identities = 67/124 (54%), Positives = 93/124 (75%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct:   476 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 535

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct:   536 DEDLKDRTVKRTDEEGKD--VPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 593

Query:   141 EYNK 144
             +YN+
Sbjct:   594 QYNE 597

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2RNY1 HNRNPUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 7.4e-32, P = 7.4e-32
 Identities = 67/124 (54%), Positives = 93/124 (75%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct:   475 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 534

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct:   535 DEDLKDRTIKRTDEEGKD--VPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 592

Query:   141 EYNK 144
             +YN+
Sbjct:   593 QYNE 596

GO:0019899 "enzyme binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9BUJ2 HNRNPUL1 "Heterogeneous nuclear ribonucleoprotein U-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 7.4e-32, P = 7.4e-32
 Identities = 67/124 (54%), Positives = 93/124 (75%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct:   475 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 534

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct:   535 DEDLKDRTIKRTDEEGKD--VPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 592

Query:   141 EYNK 144
             +YN+
Sbjct:   593 QYNE 596

GO:0009615 "response to virus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006396 "RNA processing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A4FUC2 HNRNPUL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 359 (131.4 bits), Expect = 7.4e-32, P = 7.4e-32
 Identities = 67/124 (54%), Positives = 93/124 (75%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct:   476 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 535

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct:   536 DEDLKDRTIKRTDEEGKD--VPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 593

Query:   141 EYNK 144
             +YN+
Sbjct:   594 QYNE 597

GO:0019899 "enzyme binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1307456 Hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 7.5e-32, P = 7.5e-32
 Identities = 67/124 (54%), Positives = 93/124 (75%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRL+++   ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct:   476 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 535

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R     ++EGKD   PD+ +LEMKANF LP+VG+  +EV +IELQ  EA+K++ 
Sbjct:   536 DEDLKDRTIKRTDEEGKD--VPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 593

Query:   141 EYNK 144
             +YN+
Sbjct:   594 QYNE 597

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2432 hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Danio rerio (taxid:7955)]

 Score = 328 (120.5 bits), Expect = 8.7e-30, Sum P(2) = 8.7e-30
 Identities = 64/124 (51%), Positives = 86/124 (69%)

Query:    21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
             G W  ++ + T+CLNRLL++   ++RNYILDQTNVY SAQ+RKMR + GF RKA+V+ P 
Sbjct:   465 GRWDILIQQATQCLNRLLQIASHKKRNYILDQTNVYGSAQRRKMRPFEGFHRKAVVICPR 524

Query:    81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
             +ED   R    + ++GKD   PD  +LEMKANF LPE G+  +EV +IELQ  EA  +I 
Sbjct:   525 DEDLKER-RCKQAEDGKD--VPDQAVLEMKANFVLPEAGDFLDEVMFIELQRDEARDLIK 581

Query:   141 EYNK 144
              YN+
Sbjct:   582 RYNE 585

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1MFT4 HNRNPU "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 57/121 (47%), Positives = 87/121 (71%)

Query:    26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYL 85
             ++ +  +CL + +E+   ++RN+ILDQTNV  +AQ+RKM  + GFQRKA+VV P +EDY 
Sbjct:   431 LLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYK 490

Query:    86 ARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKN 145
              R +   E EGKD   P++ +L+MK NF LPEV E F+E+TY+ELQ  EA+K++++Y + 
Sbjct:   491 QRTQKKAEVEGKD--LPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLEQYKEE 548

Query:   146 A 146
             +
Sbjct:   549 S 549

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA

GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA

UNIPROTKB|J9P6J3 HNRNPU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 314 (115.6 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 57/121 (47%), Positives = 87/121 (71%)

Query:    26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYL 85
             ++ +  +CL + +E+   ++RN+ILDQTNV  +AQ+RKM  + GFQRKA+VV P +EDY 
Sbjct:   433 LLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYK 492

Query:    86 ARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKN 145
              R +   E EGKD   P++ +L+MK NF LPEV E F+E+TY+ELQ  EA+K++++Y + 
Sbjct:   493 QRTQKKAEVEGKD--LPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLEQYKEE 550

Query:   146 A 146
             +
Sbjct:   551 S 551

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BUJ2	HNRL1_HUMAN	No assigned EC number	0.5403	0.5398	0.1425	yes	N/A
Q8VDM6	HNRL1_MOUSE	No assigned EC number	0.5403	0.5398	0.1420	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
pfam13671	143	pfam13671, AAA_33, AAA domain	3e-11

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 28  DKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKR--KMRSYFGFQRKAIVVVPTNEDYL 85
            +  + L  L        R  I+D TN+    + R   +   +G   + + +    E   
Sbjct: 53  GRVYQRLLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLR 112

Query: 86  ARLEMHREKEGKDDVP-PDNVILEMKANFKLP 116
            R    RE+ G D    P+ V+  M A F+ P
Sbjct: 113 ERNA-QRERSGGDPSDVPEAVLDRMLARFEPP 143

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG2242|consensus	558		99.89
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.53
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.34
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.21
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.04
PHA02530	300	pseT polynucleotide kinase; Provisional	96.03
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	96.01
PRK12339	197	2-phosphoglycerate kinase; Provisional	94.5
COG4639	168	Predicted kinase [General function prediction only	94.06
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	93.9
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	93.62
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	92.96
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	92.2
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	87.58
PRK14737	186	gmk guanylate kinase; Provisional	86.41
PRK12337	475	2-phosphoglycerate kinase; Provisional	82.2
KOG2242|consensus	558		81.13
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	80.61

>KOG2242|consensus

Probab=99.89  E-value=4.1e-25  Score=213.98  Aligned_cols=155  Identities=35%  Similarity=0.441  Sum_probs=150.9

Q ss_pred             hhhhhhhhcCCccccccccchhHHHHHHHHHHHHHHHH-hhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCC
Q psy7609           2 KHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLE-LGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT   80 (226)
Q Consensus         2 ~h~~dkMkV~G~~R~~~y~grwd~L~~~a~kcLnrLi~-iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPt   80 (226)
                      -|...+|++.|++...++..+|..+++++..|++.++. |+.++.||||+||||+|+++++|++.+|..|+|+++|++|+
T Consensus       282 ~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~r~~~~d~~~~s~~~~~r~~~~~~~~~~~~p~~~~~  361 (558)
T KOG2242|consen  282 NTIMPKMRVVGLEEQTNDAFSRGYLIQQAGQCLNKLPRDIFLRKKRNYILDQTNLSSSAQRRKMGLFSQFSRKAPVVCPA  361 (558)
T ss_pred             ccccCCcCcccchhhhhccccccchhhccccccccchhhhhhhhhhhhhhhccccchhhceecccccccccccCCCcCCc
Confidence            36788999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHHHHHHhcccCCCCCCCCCC
Q psy7609          81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNA  158 (226)
Q Consensus        81 eEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kYn~E~r~~~p~~~k~~~  158 (226)
                      .++++.|++.|...++++ | |++++.+|+++|++|.+.++.+++.+.+++.+++..+..+|+++++.+.+|..++++
T Consensus       362 ~~d~~s~~~v~~~~~~~d-~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  437 (558)
T KOG2242|consen  362 FEDLKSRTIVRTEVEGKD-V-GETAVLEMNANFTLPGVMDYMDETGDSELLKEEAYGIGDQYSEEARKALPPQKKPND  437 (558)
T ss_pred             hhhhccccceEeeeeccc-C-CcceEEEEeeeeccCchhhhhhhccccccchhhcccccccHhHHhhhccCccccccc
Confidence            999999999999999999 9 999999999999999999999999999999999999999999999999999877766

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.53  E-value=1.8e-07  Score=71.79  Aligned_cols=90  Identities=20%  Similarity=0.320  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEEeCChHHHHHHHHHHHHhcCCC-CCCC
Q psy7609          26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVVVPTNEDYLARLEMHREKEGKD-DVPP  102 (226)
Q Consensus        26 L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVVvPteEe~k~R~~kr~~eeGK~-~V~P  102 (226)
                      +...+-+++...+..+.+...++|||.||++.+.+.+-...+.  |+...+|++-+++|++.+|+.+|....++. .+ |
T Consensus        51 ~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~-~  129 (143)
T PF13671_consen   51 AEERAYQILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEV-P  129 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS-----
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccC-c
Confidence            4456677788888888899999999999999977766666664  788889999999999999999999877651 27 9


Q ss_pred             hHHHHHHHhccccC
Q psy7609         103 DNVILEMKANFKLP  116 (226)
Q Consensus       103 e~AvleMKAnFsLP  116 (226)
                      ++++..|.+.|..|
T Consensus       130 ~~~~~~~~~~~e~p  143 (143)
T PF13671_consen  130 EEVFDRMLARFEPP  143 (143)
T ss_dssp             HHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhhccC
Confidence            99999999999887

...

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.34  E-value=5.2e-06  Score=81.13  Aligned_cols=113  Identities=17%  Similarity=0.267  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhcCC-CCCCChHHH
Q psy7609          30 TTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKEGK-DDVPPDNVI  106 (226)
Q Consensus        30 a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK-~~V~Pe~Av  106 (226)
                      ...|+. .+..|.+..++.|||-||.....|++=+..-  .|+...+|++-.+.|+.++|...|...+.. ..| |+.++
T Consensus       406 ~~~~~~-~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~v-p~~v~  483 (526)
T TIGR01663       406 TQNCLT-ACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKI-KDMVF  483 (526)
T ss_pred             HHHHHH-HHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCC-CHHHH
Confidence            445554 4566777899999999999998887766544  567788888888999999999999864333 237 89999


Q ss_pred             HHHHhccccCCCCCCCceeeeccCC----hHHHHHHHHHHHH
Q psy7609         107 LEMKANFKLPEVGELFEEVTYIELQ----HPEAEKIIDEYNK  144 (226)
Q Consensus       107 leMKAnFsLP~~~e~fdEV~fvEL~----~eeA~klV~kYn~  144 (226)
                      ..|+..|-.|+..|+|++|.-+...    .++.+++-.+|-.
T Consensus       484 ~~~~k~fE~Pt~~EGF~~I~~v~f~~~~~~~~~~~~~~~~~~  525 (526)
T TIGR01663       484 NGMKKKFEAPALAEGFIAIHEINFKPLFADEKLEKLYCMFLE  525 (526)
T ss_pred             HHHHhhCCCCCcccCceEEEEEeCccCcCCHHHHHHHHHHhc
Confidence            9999999999999999998555544    6678888877743

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.21  E-value=0.0047  Score=53.18  Aligned_cols=87  Identities=20%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609          32 KCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEM  109 (226)
Q Consensus        32 kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleM  109 (226)
                      ..+..++..+..+..+.|+|-+|.|.+.|+.-++...  |+....|.+-++.|+..+|..+|    |.. + |++.+..|
T Consensus        55 ~~~~~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R----~~~-~-~~~~i~~l  128 (249)
T TIGR03574        55 DSTLYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER----GEK-I-PNEVIKDM  128 (249)
T ss_pred             HHHHHHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC----CCC-C-CHHHHHHH
Confidence            3445577788888899999999988887665555443  44555566677888888888766    334 7 89999999


Q ss_pred             HhccccCCCCCCCce
Q psy7609         110 KANFKLPEVGELFEE  124 (226)
Q Consensus       110 KAnFsLP~~~e~fdE  124 (226)
                      ...|..|......|.
T Consensus       129 ~~r~e~p~~~~~wd~  143 (249)
T TIGR03574       129 YEKFDEPGTKYSWDL  143 (249)
T ss_pred             HHhhCCCCCCCCccC
Confidence            999999987644443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.04  E-value=0.017  Score=45.30  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             cCCCcEEEeccCCChHHHhhhhcccc-CcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCC
Q psy7609          43 SRRRNYILDQTNVYVSAQKRKMRSYF-GFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGEL  121 (226)
Q Consensus        43 rrrRNYILDQTNVy~sAqRRKM~~F~-GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~  121 (226)
                      ....+.|||.|+. ....|+.++.+. |..-..|++..+.+++++|+..|.   +.. . |.+.+..+.+.|-.|+..+ 
T Consensus        70 ~~~~~vVid~~~~-~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~---~~~-~-~~~~~~~~~~~~~~p~~~~-  142 (150)
T cd02021          70 SAGEGVVVACSAL-KRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK---GHF-M-PADLLDSQFETLEPPGEDE-  142 (150)
T ss_pred             hCCCCEEEEeccc-cHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc---cCC-C-CHHHHHHHHHHhcCCCCCC-
Confidence            5677999999985 456667777664 555567788888999999998884   444 5 8899999999999988743 


Q ss_pred             Cceeeecc
Q psy7609         122 FEEVTYIE  129 (226)
Q Consensus       122 fdEV~fvE  129 (226)
                       .+|++++
T Consensus       143 -~~~~~~~  149 (150)
T cd02021         143 -EDVIVID  149 (150)
T ss_pred             -CCeEEcc
Confidence             4555543

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.03  E-value=0.035  Score=48.43  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             HHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609          32 KCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEM  109 (226)
Q Consensus        32 kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleM  109 (226)
                      ..+..++..+.....++|||-||...+.+..-.....  ++.-..|.+.++.|++.+|..+|   .+.. + |++.|..|
T Consensus        62 ~~~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R---~~~~-~-~~~~i~~~  136 (300)
T PHA02530         62 KAQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR---GERA-V-PEDVLRSM  136 (300)
T ss_pred             HHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc---CcCC-C-CHHHHHHH
Confidence            3444555556667899999999987776654322332  45566788888999999999998   3445 8 99998866


Q ss_pred             Hhccc
Q psy7609         110 KANFK  114 (226)
Q Consensus       110 KAnFs  114 (226)
                      -.-+-
T Consensus       137 ~~~~~  141 (300)
T PHA02530        137 FKQMK  141 (300)
T ss_pred             HHHHH
Confidence            55444

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=96.01  E-value=0.024  Score=47.31  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhc------CCCC
Q psy7609          28 DKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKE------GKDD   99 (226)
Q Consensus        28 ~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~ee------GK~~   99 (226)
                      ..|.....++++.|...++|+|+|.|---++.-+.-++.|  .||+-..++|..++|.-..|..+|.+++      |-. 
T Consensus        76 ~~a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~-  154 (199)
T PF06414_consen   76 KEASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRF-  154 (199)
T ss_dssp             HHHHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT----
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcC-
Confidence            3455567889999999999999999877766666566666  6899777777777888889999999999      877 


Q ss_pred             CCChHHHH
Q psy7609         100 VPPDNVIL  107 (226)
Q Consensus       100 V~Pe~Avl  107 (226)
                      | |.+.+.
T Consensus       155 v-~~~~~~  161 (199)
T PF06414_consen  155 V-PEEKHD  161 (199)
T ss_dssp             ---HCCCH
T ss_pred             C-CHHHHH
Confidence            8 665443

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=94.50  E-value=0.44  Score=40.95  Aligned_cols=72  Identities=11%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChH
Q psy7609          28 DKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDN  104 (226)
Q Consensus        28 ~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~  104 (226)
                      +.....|..+++.+.....+.|||+++..+.-+..+...  + ..-..|.+++++++++|+..|....+.. . |.+
T Consensus        80 ~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~-~-p~~  151 (197)
T PRK12339         80 RAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTN--N-IRAFYLYIRDAELHRSRLADRINYTHKN-S-PGK  151 (197)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhc--C-eEEEEEEeCCHHHHHHHHHHHhhcccCC-C-cHH
Confidence            344455788888888999999999988887665433322  2 1234445688999999999999877777 6 766

>COG4639 Predicted kinase [General function prediction only]

Probab=94.06  E-value=0.28  Score=42.71  Aligned_cols=87  Identities=26%  Similarity=0.277  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHH
Q psy7609          30 TTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVIL  107 (226)
Q Consensus        30 a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Avl  107 (226)
                      +.+.+-+.++...++.+-.|+|-||+=.+-||+-+..=  -||.-.+||+=.+.++...|-+.+.+    . | |+++|.
T Consensus        54 ~~~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R----q-v-~~~VI~  127 (168)
T COG4639          54 VWDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER----Q-V-PEEVIP  127 (168)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch----h-C-CHHHHH
Confidence            34455666677788999999999999887766654433  67788899998999999998764443    3 8 999999


Q ss_pred             HHHhccccCCCCCCC
Q psy7609         108 EMKANFKLPEVGELF  122 (226)
Q Consensus       108 eMKAnFsLP~~~e~f  122 (226)
                      .|-----.+..+|+|
T Consensus       128 r~~r~~~~~l~~e~~  142 (168)
T COG4639         128 RMLRETIDLLEKEPF  142 (168)
T ss_pred             HHHHHHHhhccCCCe
Confidence            887763334444544

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=93.90  E-value=1.8  Score=34.39  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=55.3

Q ss_pred             cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCC
Q psy7609          43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELF  122 (226)
Q Consensus        43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~f  122 (226)
                      ....+-|||.|+... .-|..++ -.+..-..|++-++.+++.+|+.+|.   |.. + |.+.+..+...+..|...+. 
T Consensus        68 ~~~~~~Vi~~t~~~~-~~r~~~~-~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~-~-~~~~i~~~~~~~~~~~~~e~-  139 (163)
T TIGR01313        68 AKNKVGIITCSALKR-HYRDILR-EAEPNLHFIYLSGDKDVILERMKARK---GHF-M-KADMLESQFAALEEPLADET-  139 (163)
T ss_pred             hcCCCEEEEecccHH-HHHHHHH-hcCCCEEEEEEeCCHHHHHHHHHhcc---CCC-C-CHHHHHHHHHHhCCCCCCCC-
Confidence            344566999997644 3344454 23333455777788999999999885   334 6 66778888777888876652 


Q ss_pred             ceeeec--cCChHHHHHHH
Q psy7609         123 EEVTYI--ELQHPEAEKII  139 (226)
Q Consensus       123 dEV~fv--EL~~eeA~klV  139 (226)
                       .+.-+  +.+.|+..+.+
T Consensus       140 -~~~~id~~~~~~~~~~~~  157 (163)
T TIGR01313       140 -DVLRVDIDQPLEGVEEDC  157 (163)
T ss_pred             -ceEEEECCCCHHHHHHHH
Confidence             23333  34444544443

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=93.62  E-value=0.39  Score=39.12  Aligned_cols=67  Identities=15%  Similarity=-0.018  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHH
Q psy7609          26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHR   92 (226)
Q Consensus        26 L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~   92 (226)
                      +.+.+-..+...+..+.....|.|+|-|+......|..++-|.+..-.-|.|.++.+++.+|..+|.
T Consensus        66 ~~~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          66 EFRLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence            4556666666777778889999999998774455555666677655567778888999999999874

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=92.96  E-value=0.91  Score=42.67  Aligned_cols=89  Identities=18%  Similarity=0.174  Sum_probs=64.9

Q ss_pred             HHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcc--eEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHh
Q psy7609          34 LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQ--RKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKA  111 (226)
Q Consensus        34 LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFq--RKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKA  111 (226)
                      +.+++..+-.++-=.|||-||.+.+-|..=.+....+.  -..|.+-.+.|+..+|..+|.    .. | |++++..|-.
T Consensus       116 ~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~----~~-v-~devie~m~~  189 (340)
T TIGR03575       116 CHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRP----VP-L-PDETIQLMGR  189 (340)
T ss_pred             HHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCC----CC-C-CHHHHHHHHH
Confidence            46777777666667999999999998876555443332  245566677888999988874    45 8 9999999999


Q ss_pred             ccccCCC-CCCCceeeec
Q psy7609         112 NFKLPEV-GELFEEVTYI  128 (226)
Q Consensus       112 nFsLP~~-~e~fdEV~fv  128 (226)
                      .|--|.. ..-.|.-.|.
T Consensus       190 r~E~P~~~~nrWd~pl~~  207 (340)
T TIGR03575       190 KIEKPNPEKNAWEHNSLV  207 (340)
T ss_pred             HhcCCCCCCCCCCCCeEE
Confidence            9999997 3444444443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.20  E-value=0.69  Score=42.51  Aligned_cols=101  Identities=22%  Similarity=0.346  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhhcCCCcE--EEeccCCChHHHhhhhccccCcc-eEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHH
Q psy7609          32 KCLNRLLELGFSRRRNY--ILDQTNVYVSAQKRKMRSYFGFQ-RKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILE  108 (226)
Q Consensus        32 kcLnrLi~iAarrrRNY--ILDQTNVy~sAqRRKM~~F~GFq-RKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Avle  108 (226)
                      +...++|.-|-+   ||  |.|-||-|.|-||---+.=+.+. -=|||-+-+.-|.-.   ++..+-|.. + |++++.+
T Consensus        62 ks~~rlldSalk---n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~---rrN~ergep-i-p~Evl~q  133 (261)
T COG4088          62 KSVERLLDSALK---NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCL---RRNRERGEP-I-PEEVLRQ  133 (261)
T ss_pred             HHHHHHHHHHhc---ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHH---HhhccCCCC-C-CHHHHHH
Confidence            334556666666   66  67999999999998777666654 446665544444322   344567777 9 9999999


Q ss_pred             HHhccccCCCCCCCceeeeccCChHHHHHHHH
Q psy7609         109 MKANFKLPEVGELFEEVTYIELQHPEAEKIID  140 (226)
Q Consensus       109 MKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~  140 (226)
                      |--.|-=|+..-..|+-.|+-+..+.+.+-|+
T Consensus       134 ly~RfEePn~~~rWDspll~id~~d~~t~~ID  165 (261)
T COG4088         134 LYDRFEEPNPDRRWDSPLLVIDDSDVSTEVID  165 (261)
T ss_pred             HHHhhcCCCCCccccCceEEEecccccccchh
Confidence            99999999999999999999987665555443

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=87.58  E-value=1.5  Score=35.94  Aligned_cols=93  Identities=20%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccC
Q psy7609          38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLP  116 (226)
Q Consensus        38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP  116 (226)
                      |+.+....+.-|||- +.-+-.+-++.    ++.-..|-| +|+.+++++|+.++..+.-+. +  ..-+..+...|...
T Consensus        86 i~~~~~~gk~~il~~-~~~g~~~L~~~----~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~-i--~~r~~~~~~~~~~~  157 (183)
T PF00625_consen   86 IDKVLEEGKHCILDV-DPEGVKQLKKA----GFNPIVIFIKPPSPEVLKRRLRRRGDESEEE-I--EERLERAEKEFEHY  157 (183)
T ss_dssp             HHHHHHTTTEEEEEE-THHHHHHHHHC----TTTEEEEEEEESSHHHHHHHHHTTTHCHHHH-H--HHHHHHHHHHHGGG
T ss_pred             hhHhhhcCCcEEEEc-cHHHHHHHHhc----ccCceEEEEEccchHHHHHHHhccccccHHH-H--HHHHHHHHHHHhHh
Confidence            455667889999994 44443333433    555556655 688899999987654321111 1  22333444444433


Q ss_pred             CCCCCCceeeeccCChHHHHHHHHHH
Q psy7609         117 EVGELFEEVTYIELQHPEAEKIIDEY  142 (226)
Q Consensus       117 ~~~e~fdEV~fvEL~~eeA~klV~kY  142 (226)
                      ..   ||-|+--+ +.|+|.+.|.++
T Consensus       158 ~~---fd~vi~n~-~le~~~~~l~~i  179 (183)
T PF00625_consen  158 NE---FDYVIVND-DLEEAVKELKEI  179 (183)
T ss_dssp             GG---SSEEEECS-SHHHHHHHHHHH
T ss_pred             hc---CCEEEECc-CHHHHHHHHHHH
Confidence            33   88888755 788887777665

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=86.41  E-value=5  Score=33.90  Aligned_cols=91  Identities=20%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             HHhhhcCCCcEEEeccCCChHHHhhhhccccCcce-EEEEEeC-ChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhcccc
Q psy7609          38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQR-KAIVVVP-TNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKL  115 (226)
Q Consensus        38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqR-KAVVVvP-teEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsL  115 (226)
                      |+.+....++.|||- ++-+-.+-++.  |.+  . ..|-|+| +.|++.+|+.+|-    .+   +++.+.++-++- .
T Consensus        87 i~~~~~~g~~~i~d~-~~~g~~~l~~~--~~~--~~~~Ifi~pps~e~l~~RL~~R~----~~---s~e~i~~Rl~~~-~  153 (186)
T PRK14737         87 IEDAFKEGRSAIMDI-DVQGAKIIKEK--FPE--RIVTIFIEPPSEEEWEERLIHRG----TD---SEESIEKRIENG-I  153 (186)
T ss_pred             HHHHHHcCCeEEEEc-CHHHHHHHHHh--CCC--CeEEEEEECCCHHHHHHHHHhcC----CC---CHHHHHHHHHHH-H
Confidence            555667889999993 44444444443  322  2 3444544 6799999998773    33   555566655542 3


Q ss_pred             CCC--CCCCceeeeccCChHHHHHHHHHH
Q psy7609         116 PEV--GELFEEVTYIELQHPEAEKIIDEY  142 (226)
Q Consensus       116 P~~--~e~fdEV~fvEL~~eeA~klV~kY  142 (226)
                      ++.  ...||-|+--+ +.++|..-|.+.
T Consensus       154 ~e~~~~~~~D~vI~N~-dle~a~~ql~~i  181 (186)
T PRK14737        154 IELDEANEFDYKIIND-DLEDAIADLEAI  181 (186)
T ss_pred             HHHhhhccCCEEEECc-CHHHHHHHHHHH
Confidence            433  37799999888 888887666543

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=82.20  E-value=11  Score=37.46  Aligned_cols=67  Identities=13%  Similarity=0.172  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcc-eEEEEEeCChHHHHHHHHHHHHhcCCC
Q psy7609          30 TTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQ-RKAIVVVPTNEDYLARLEMHREKEGKD   98 (226)
Q Consensus        30 a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFq-RKAVVVvPteEe~k~R~~kr~~eeGK~   98 (226)
                      +...+..+|+.+.+...+.|||=.|.++.-.+.++  +.+=. .--+|+|+++|++++|...|....+..
T Consensus       344 V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~--~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~  411 (475)
T PRK12337        344 VAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPY--QAGALVVPMLVTLPDEALHRRRFELRDRETGAS  411 (475)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHH--hcCCceEEEEEEECCHHHHHHHHHHHhhhccCC
Confidence            33349999999999999999999999999876444  33322 234788999999999999999888765

>KOG2242|consensus

Probab=81.13  E-value=0.53  Score=47.12  Aligned_cols=100  Identities=11%  Similarity=0.094  Sum_probs=84.2

Q ss_pred             CcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCC-CCCce
Q psy7609          46 RNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVG-ELFEE  124 (226)
Q Consensus        46 RNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~-e~fdE  124 (226)
                      ++-++++++++.++.|  +..+..+.|.||.+-|.+-.+..|...+++..+-. + -+.++.....+++||... -++||
T Consensus        49 ~~~~~~~~~~~~~~e~--~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~-~-~~~~~~~~~~~~~L~~~~~~~~~~  124 (558)
T KOG2242|consen   49 KYRRDRSSGYALTKER--FAGPWDGARAAYSVSRGEVCFEMRINEPEEVPHFQ-P-LEPDPHDVRIGWSLDSIRTLLGDE  124 (558)
T ss_pred             hcccccccccccchhh--ccccCcccceeeeecCCcchhhcccccccccCCCC-c-cccccccccccccchhhhhccccc
Confidence            7888999999999999  66666677999999999999999999998877555 5 788888899999999976 78888


Q ss_pred             e---eeccCChHHHHHHHHHHHHhcccC
Q psy7609         125 V---TYIELQHPEAEKIIDEYNKNADGT  149 (226)
Q Consensus       125 V---~fvEL~~eeA~klV~kYn~E~r~~  149 (226)
                      .   .|.++..+...-.+++|++-....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~e~f~e~  152 (558)
T KOG2242|consen  125 PFSYGYSETGKKSCNSEVEKYGEKFPEN  152 (558)
T ss_pred             cccccccccccchhhHHHHHHHhhcccc
Confidence            8   899999888888888887765543

>smart00072 GuKc Guanylate kinase homologues

Probab=80.61  E-value=14  Score=30.49  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=49.4

Q ss_pred             HHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhc--c
Q psy7609          37 LLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILEMKAN--F  113 (226)
Q Consensus        37 Li~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAn--F  113 (226)
                      .|+-+.+..++.|||-+ +-+-.+-+++.    +.-..|-| .|+.+++++|+.+|.    .+   .++.+.++-+.  .
T Consensus        85 ~i~~~~~~~~~~ild~~-~~~~~~l~~~~----~~~~vIfi~~~s~~~l~~rl~~R~----~~---~~~~i~~rl~~a~~  152 (184)
T smart00072       85 TIRQVAEQGKHCLLDID-PQGVKQLRKAQ----LYPIVIFIAPPSSEELERRLRGRG----TE---TAERIQKRLAAAQK  152 (184)
T ss_pred             HHHHHHHcCCeEEEEEC-HHHHHHHHHhC----CCcEEEEEeCcCHHHHHHHHHhcC----CC---CHHHHHHHHHHHHH
Confidence            34555567899999965 44444444432    23334444 377778999999764    33   33333332222  1


Q ss_pred             ccCCCCCCCceeeeccCChHHHHHHHH
Q psy7609         114 KLPEVGELFEEVTYIELQHPEAEKIID  140 (226)
Q Consensus       114 sLP~~~e~fdEV~fvEL~~eeA~klV~  140 (226)
                      -+ .....||-|+--+ +.++|-+-|.
T Consensus       153 ~~-~~~~~fd~~I~n~-~l~~~~~~l~  177 (184)
T smart00072      153 EA-QEYHLFDYVIVND-DLEDAYEELK  177 (184)
T ss_pred             HH-hhhccCCEEEECc-CHHHHHHHHH
Confidence            11 1125688887776 6666544443

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	1e-08
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	2e-07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	9e-06

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 2   KHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQK 61
           K+   ++ + S+ +R+       +  +   K   RL++    +    I+D TN Y S ++
Sbjct: 30  KNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDS-ALKNYWVIVDDTNYYNSMRR 88

Query: 62  RKMRSYFGFQ-RKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGE 120
             +     +    AI+ +  + D L R  + R ++      P+ VI +M   F  P    
Sbjct: 89  DLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK-----IPNEVIKKMYEKFDEPGKKY 143

Query: 121 LFEEVTYI-----ELQHPEAEKIIDEYNKN 145
            ++E   I     ++   E  K + E +K 
Sbjct: 144 KWDEPFLIIDTTKDIDFNEIAKKLIEKSKE 173

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 31  TKCLNRLLELGFSRRRNYILDQTNVYVSAQKR--KMRSYFGFQRKAIVVVPTNEDYLARL 88
            +C++        + +  ++D TN  V ++ R  +     G   +      T E      
Sbjct: 296 QRCVSSCQAA-LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNN 354

Query: 89  EMHREKEGKDDVP-PDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDE--YNKN 145
              RE       P  D V+   +  F+ P + E F E+  I  +  E      +  Y + 
Sbjct: 355 R-FREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQF 413

Query: 146 ADG 148
           ++G
Sbjct: 414 SEG 416

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 18/127 (14%)

Query: 25  QVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKR--KMRSYFGFQRKAIVVVPTNE 82
            V          +L  G S +   I+  TN+    +         +G++ +  V      
Sbjct: 59  IVTGMQFDTAKSILYGGDSVK-GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWT 117

Query: 83  DYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEY 142
           + + R      K     VP D V+  M  + +      ++          P+A  I D  
Sbjct: 118 ELVKRNSKRGTK----AVPID-VLRSMYKSMREYLGLPVYNG----TPGKPKA-VIFD-- 165

Query: 143 NKNADGT 149
               DGT
Sbjct: 166 ---VDGT 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.59
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.22
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.42
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.33
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	91.7
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	91.23
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	90.7
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	88.57
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	87.71
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	85.16
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	83.85
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	81.57
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	80.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	80.4

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.59  E-value=1.4e-07  Score=85.61  Aligned_cols=105  Identities=17%  Similarity=0.299  Sum_probs=85.9

Q ss_pred             HHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhcCC-CCCCChHHHHHHHhccc
Q psy7609          38 LELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKEGK-DDVPPDNVILEMKANFK  114 (226)
Q Consensus        38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK-~~V~Pe~AvleMKAnFs  114 (226)
                      +..+....+++|||-||.....|..-+..+  .|+....|++-++.|++.+|+.+|....+. ..+ |++++..|.+.|-
T Consensus       302 ~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~-~~~~~~~~~~~~e  380 (416)
T 3zvl_A          302 CQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPV-SDMVMFSYRKQFE  380 (416)
T ss_dssp             HHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCC-CHHHHHHHHHHCC
T ss_pred             HHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCC-CHHHHHHHHHhcC
Confidence            334445789999999999887776665555  366677888888999999999999875443 137 9999999999999


Q ss_pred             cCCCCCCCceeeeccCCh-----HHHHHHHHHHH
Q psy7609         115 LPEVGELFEEVTYIELQH-----PEAEKIIDEYN  143 (226)
Q Consensus       115 LP~~~e~fdEV~fvEL~~-----eeA~klV~kYn  143 (226)
                      .|...|.||+|.++.+..     +++.++.+.|+
T Consensus       381 ~P~~~E~fd~v~~v~~~~~~f~~~~~~~l~~~~~  414 (416)
T 3zvl_A          381 PPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFS  414 (416)
T ss_dssp             CCCGGGTCSEEEEECCCCCTTCCHHHHHHHTSCC
T ss_pred             CCCcccCCcEEEEEecccccccCHHHHHHHHHhh
Confidence            999999999999999765     48999998887

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.22  E-value=0.008  Score=45.59  Aligned_cols=78  Identities=14%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             HHHHhhh---cCCCcEEEeccCCChHHHhhhhc-cc--cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609          36 RLLELGF---SRRRNYILDQTNVYVSAQKRKMR-SY--FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEM  109 (226)
Q Consensus        36 rLi~iAa---rrrRNYILDQTNVy~sAqRRKM~-~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleM  109 (226)
                      .++.-+.   ...+++|||-+|.... ++..+. .+  .|+.-..|.+-++.|++.+|+.+|..   .. + |++.+..|
T Consensus        66 ~~~~~~l~~~~~g~~vi~d~~~~~~~-~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~---~~-~-~~~~i~~~  139 (181)
T 1ly1_A           66 DTAKSILYGGDSVKGVIISDTNLNPE-RRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KA-V-PIDVLRSM  139 (181)
T ss_dssp             HHHHHHHTSCSSCCEEEECSCCCSHH-HHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG---GC-C-CHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEeCCCCCHH-HHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc---CC-C-CHHHHHHH
Confidence            3444444   6789999999998764 444443 22  34555677788899999999988753   34 7 99999999


Q ss_pred             HhccccCCCC
Q psy7609         110 KANFKLPEVG  119 (226)
Q Consensus       110 KAnFsLP~~~  119 (226)
                      .+.|.-|...
T Consensus       140 ~~~~~~~~~~  149 (181)
T 1ly1_A          140 YKSMREYLGL  149 (181)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHhhccCCC
Confidence            9999888543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.42  E-value=0.22  Score=41.47  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=54.4

Q ss_pred             HHHHHHhhh---cCCCcEEEeccCCChHHHhhhhccc---cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHH
Q psy7609          34 LNRLLELGF---SRRRNYILDQTNVYVSAQKRKMRSY---FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVIL  107 (226)
Q Consensus        34 LnrLi~iAa---rrrRNYILDQTNVy~sAqRRKM~~F---~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Avl  107 (226)
                      +..++..+.   ...+++|||-+|.... +|..+...   .|+.-..|.+-++.|++.+|+.+|..   .. + |++.+.
T Consensus        64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~-~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~-~-~~e~i~  137 (301)
T 1ltq_A           64 QFDTAKSILYGGDSVKGVIISDTNLNPE-RRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KA-V-PIDVLR  137 (301)
T ss_dssp             HHHHHHHHTTSCTTCCEEEECSCCCCHH-HHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG---GC-C-CHHHHH
T ss_pred             HHHHHHHHHhhccCCCEEEEeCCCCCHH-HHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC---CC-C-CHHHHH
Confidence            334455555   6788999999998754 44444422   25555677778899999999988752   45 7 899999


Q ss_pred             HHHhccccC
Q psy7609         108 EMKANFKLP  116 (226)
Q Consensus       108 eMKAnFsLP  116 (226)
                      .|-+.|.-|
T Consensus       138 ~~~~~~~~~  146 (301)
T 1ltq_A          138 SMYKSMREY  146 (301)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            988777544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.33  E-value=1.1  Score=35.02  Aligned_cols=105  Identities=10%  Similarity=0.098  Sum_probs=64.8

Q ss_pred             cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCC
Q psy7609          43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELF  122 (226)
Q Consensus        43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~f  122 (226)
                      ...+++|||.++..... +..+....+..-..|++-++.|++.+|+.+|.   +.. . +.+.+....+.+.-|...+ -
T Consensus        84 ~~~~~vivd~~~~~~~~-~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---~~~-~-~~~~~~~~~~~~~~~~~~~-~  156 (202)
T 3t61_A           84 ASREPVVVSCSALKRSY-RDKLRESAPGGLAFVFLHGSESVLAERMHHRT---GHF-M-PSSLLQTQLETLEDPRGEV-R  156 (202)
T ss_dssp             TSSSCCEEECCCCSHHH-HHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH---SSC-C-CHHHHHHHHHHCCCCTTST-T
T ss_pred             hcCCCEEEECCCCCHHH-HHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh---ccC-C-CHHHHHHHHHhcCCCCCCC-C
Confidence            56789999988765544 44444433433466777788999999999876   233 4 6777777777776553322 2


Q ss_pred             ceeeeccCChHH-HHHHHHHHHHhcccCCCCCC
Q psy7609         123 EEVTYIELQHPE-AEKIIDEYNKNADGTYNYPQ  154 (226)
Q Consensus       123 dEV~fvEL~~ee-A~klV~kYn~E~r~~~p~~~  154 (226)
                      +-++-...+.++ +.++++..++.+=..-||.+
T Consensus       157 ~~~Id~~~~~~e~~~~I~~~l~~~~~~~~~~~~  189 (202)
T 3t61_A          157 TVAVDVAQPLAEIVREALAGLARLAENLYFQSH  189 (202)
T ss_dssp             EEEEESSSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEeCCCCHHHHHHHHHHHHHHhhhcceeecc
Confidence            333444455555 55555666666655544443

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=91.70  E-value=2.8  Score=34.82  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=50.7

Q ss_pred             HHhhhcCCCcEEEeccCCChHHHhhhhccc---cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccc
Q psy7609          38 LELGFSRRRNYILDQTNVYVSAQKRKMRSY---FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFK  114 (226)
Q Consensus        38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F---~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFs  114 (226)
                      +..+... .++|||-||.+...+ ..+...   .++.-..|.+-.+.|++.+|+.+|.    .. + |++.+..|...|-
T Consensus        66 i~~~l~~-~~vIiD~~~~~~~~~-~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~----~~-~-~~~~l~~~~~~~e  137 (260)
T 3a4m_A           66 IDSALKN-YWVIVDDTNYYNSMR-RDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG----EK-I-PNEVIKKMYEKFD  137 (260)
T ss_dssp             HHHHHTT-SEEEECSCCCSHHHH-HHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT----CS-S-CHHHHHHHHHHCC
T ss_pred             HHHHhhC-CEEEEeCCcccHHHH-HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC----CC-C-CHHHHHHHHHHhc
Confidence            3334445 899999988876544 444332   2344455666678899999998763    44 7 8899999998888


Q ss_pred             cCCC
Q psy7609         115 LPEV  118 (226)
Q Consensus       115 LP~~  118 (226)
                      -|..
T Consensus       138 ~~~~  141 (260)
T 3a4m_A          138 EPGK  141 (260)
T ss_dssp             CTTS
T ss_pred             Cccc
Confidence            7764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=91.23  E-value=0.87  Score=42.73  Aligned_cols=82  Identities=10%  Similarity=-0.003  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhh-hcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEE-eCChHHHHHHHHHHHHh--cCCCCCCChH
Q psy7609          31 TKCLNRLLELG-FSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVV-VPTNEDYLARLEMHREK--EGKDDVPPDN  104 (226)
Q Consensus        31 ~kcLnrLi~iA-arrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVV-vPteEe~k~R~~kr~~e--eGK~~V~Pe~  104 (226)
                      ..++..++... ....++.|||-||.....|..-+..+.  |+.-..|.+ ||+++.+.+|+.++...  +.+. .+|++
T Consensus       104 ~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~-~d~e~  182 (520)
T 2axn_A          104 LAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKD-CNSAE  182 (520)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTT-SCHHH
T ss_pred             HHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCcccc-CCHHH
Confidence            34454444433 256789999999999887766555554  554334433 36688888999776532  3333 22788


Q ss_pred             HHHHHHhcc
Q psy7609         105 VILEMKANF  113 (226)
Q Consensus       105 AvleMKAnF  113 (226)
                      ++..|+..+
T Consensus       183 ~~~~~~~Ri  191 (520)
T 2axn_A          183 AMDDFMKRI  191 (520)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887775443

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=90.70  E-value=0.99  Score=38.64  Aligned_cols=74  Identities=11%  Similarity=0.133  Sum_probs=47.5

Q ss_pred             HHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHH----HHHHHHHHHhcC---CCCCCChH
Q psy7609          34 LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDY----LARLEMHREKEG---KDDVPPDN  104 (226)
Q Consensus        34 LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~----k~R~~kr~~eeG---K~~V~Pe~  104 (226)
                      ...+++.+....+|+|||-|+.-...+..-+..+  .||.-..+++..+.+..    .+|+.+|....|   .. + |++
T Consensus        99 ~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~-~-~~e  176 (287)
T 1gvn_B           99 TEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARA-T-PKQ  176 (287)
T ss_dssp             HHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCC-C-CHH
T ss_pred             HHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCC-C-CHH
Confidence            3455666667789999998887665322222222  36665566666666666    899998887655   45 6 655


Q ss_pred             HHHHH
Q psy7609         105 VILEM  109 (226)
Q Consensus       105 AvleM  109 (226)
                      +...+
T Consensus       177 ~~~~i  181 (287)
T 1gvn_B          177 AHDIV  181 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=88.57  E-value=1.1  Score=37.46  Aligned_cols=72  Identities=14%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             hcCCCcEEEec-cCCChHHHhhhhcc---ccCcceEEEEEeCCh-HHHHHHHHHHHHh--cCCCCCCChHHHHHHHhccc
Q psy7609          42 FSRRRNYILDQ-TNVYVSAQKRKMRS---YFGFQRKAIVVVPTN-EDYLARLEMHREK--EGKDDVPPDNVILEMKANFK  114 (226)
Q Consensus        42 arrrRNYILDQ-TNVy~sAqRRKM~~---F~GFqRKAVVVvPte-Ee~k~R~~kr~~e--eGK~~V~Pe~AvleMKAnFs  114 (226)
                      ..+.++.|||. ++.|..+   .+..   ..+|.-..|.+-++. |++.+|+.+|.++  .+.+ + +++.+.++.+.|-
T Consensus        87 ~~~g~~vIl~gg~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~-~-~~~~l~e~~~~~~  161 (253)
T 2ze6_A           87 RKSEEGLILEGGSISLLNC---MAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIRE-D-RPSLLEELAELWN  161 (253)
T ss_dssp             TTTSSEEEEEECCHHHHHH---HHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCS-S-SCCHHHHHHHHHT
T ss_pred             HhCCCCeEEeccHHHHHHH---HHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCc-c-cchHHHHHHHhcC
Confidence            34667889986 4433322   2222   145655555566665 9999999999877  4666 8 8888999999988


Q ss_pred             cCCC
Q psy7609         115 LPEV  118 (226)
Q Consensus       115 LP~~  118 (226)
                      .|..
T Consensus       162 ~p~~  165 (253)
T 2ze6_A          162 YPAA  165 (253)
T ss_dssp             STTH
T ss_pred             Ccch
Confidence            8864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=87.71  E-value=1.6  Score=32.01  Aligned_cols=95  Identities=12%  Similarity=0.092  Sum_probs=54.7

Q ss_pred             cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHh--ccccCCCCC
Q psy7609          43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKA--NFKLPEVGE  120 (226)
Q Consensus        43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKA--nFsLP~~~e  120 (226)
                      ....++|+|-.  ....++..|+...+-.-..|.+-++.|.+.+|+.+|...+... - +++....+..  .+.++....
T Consensus        76 ~~~~~vi~dg~--~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~-~-~~~~~~r~~~~~~~~~~~~~~  151 (179)
T 3lw7_A           76 SNHDLVVFDGV--RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSK-E-ISELIRRDREELKLGIGEVIA  151 (179)
T ss_dssp             CCCSCEEEECC--CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CC-C-HHHHHHHHHHHHHHTHHHHHH
T ss_pred             cCCCeEEEeCC--CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcc-h-HHHHHHHHHhhhccChHhHHH
Confidence            56789999975  6666666666554433456667788899999999885433223 2 5666655533  222333323


Q ss_pred             CCceeeeccCChHHHHHHHHH
Q psy7609         121 LFEEVTYIELQHPEAEKIIDE  141 (226)
Q Consensus       121 ~fdEV~fvEL~~eeA~klV~k  141 (226)
                      ..|-|+-..-+.++..+-|.+
T Consensus       152 ~ad~vId~~~~~~~~~~~i~~  172 (179)
T 3lw7_A          152 MADYIITNDSNYEEFKRRCEE  172 (179)
T ss_dssp             TCSEEEECCSCHHHHHHHHHH
T ss_pred             hCCEEEECCCCHHHHHHHHHH
Confidence            345555545455555444443

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=85.16  E-value=4.4  Score=30.76  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhhcCCCcEEEeccCCChHHHhhhh---ccccCcceEEEEEeCChHHHHHHHHHHHH
Q psy7609          32 KCLNRLLELGFSRRRNYILDQTNVYVSAQKRKM---RSYFGFQRKAIVVVPTNEDYLARLEMHRE   93 (226)
Q Consensus        32 kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM---~~F~GFqRKAVVVvPteEe~k~R~~kr~~   93 (226)
                      +.+..++..+.....+.|+|-+| ....+.+.+   ..-.++.-..|++-++.|++.+|+.+|..
T Consensus        64 ~~~~~~~~~~l~~g~~vi~d~~~-~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           64 MMLYHTAATILQSGQSLIMESNF-RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECC-CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCeEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            33444555555678899999998 322222333   22123334566666788999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=83.85  E-value=6  Score=32.54  Aligned_cols=64  Identities=16%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHh
Q psy7609          31 TKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREK   94 (226)
Q Consensus        31 ~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~e   94 (226)
                      .+.+..+++.+.....|+|||-++.-...++.-++.+  .|+.-..|+|..+.|+..+|..+|..+
T Consensus        95 ~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~  160 (253)
T 2p5t_B           95 GKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYEE  160 (253)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHH
Confidence            3444556666666678999998765444333222233  577777777788899999999988754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=81.57  E-value=17  Score=28.37  Aligned_cols=93  Identities=11%  Similarity=0.017  Sum_probs=53.4

Q ss_pred             hcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCC
Q psy7609          42 FSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGEL  121 (226)
Q Consensus        42 arrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~  121 (226)
                      .....+.|+|-+.... ..|..++-... .-..|.+-++.|++.+|+.+|.   +.. . +.+.+..+.+.+..|...+ 
T Consensus        98 ~~~g~~viid~~~~~~-~~~~~l~~~~~-~~~vv~l~~~~e~l~~Rl~~R~---~~~-~-~~~~l~~~~~~~~~~~~~~-  169 (200)
T 4eun_A           98 ADAGVSTIITCSALKR-TYRDVLREGPP-SVDFLHLDGPAEVIKGRMSKRE---GHF-M-PASLLQSQLATLEALEPDE-  169 (200)
T ss_dssp             HHTTCCEEEEECCCCH-HHHHHHTTSSS-CCEEEEEECCHHHHHHHHTTCS---CCS-S-CGGGHHHHHHHCCCCCTTS-
T ss_pred             HhcCCCEEEEchhhhH-HHHHHHHHhCC-ceEEEEEeCCHHHHHHHHHhcc---cCC-C-CHHHHHHHHHHhCCCCCCC-
Confidence            3456899999875553 44444443211 1245667788899999997664   233 4 5566777776665443322 


Q ss_pred             CceeeeccCChHHHHHHHHHH
Q psy7609         122 FEEVTYIELQHPEAEKIIDEY  142 (226)
Q Consensus       122 fdEV~fvEL~~eeA~klV~kY  142 (226)
                      .+-++-...+.+++.+.|.++
T Consensus       170 ~~~~Id~~~~~~e~~~~I~~~  190 (200)
T 4eun_A          170 SGIVLDLRQPPEQLIERALTW  190 (200)
T ss_dssp             CEEEEETTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCHHHHHHHHHHH
Confidence            333333455666655444443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=80.40  E-value=2.5  Score=34.58  Aligned_cols=91  Identities=18%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHH-HHh---c
Q psy7609          38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILE-MKA---N  112 (226)
Q Consensus        38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~Avle-MKA---n  112 (226)
                      ++.+....++.||| .++-+..+-++..+   +....|.| .|+.|+|++|+.+|    |.+   .++.|.. |.+   .
T Consensus        85 v~~~l~~g~~vil~-id~~g~~~~k~~~~---~~~~~Ifi~pps~e~L~~RL~~R----g~e---~~e~i~~Rl~~a~~e  153 (186)
T 1ex7_A           85 VKQVSKSGKTCILD-IDMQGVKSVKAIPE---LNARFLFIAPPSVEDLKKRLEGR----GTE---TEESINKRLSAAQAE  153 (186)
T ss_dssp             HHHHHHHTSEEEEE-CCHHHHHHHHTCGG---GCCEEEEEECSCHHHHHHHHHHH----CCS---CHHHHHHHHHHHHHH
T ss_pred             eeehhhCCCEEEec-CCHHHHHHHHHhcc---cCceEEEEeCCCHHHHHHHHHhc----CCC---CHHHHHHHHHHHHHH
Confidence            44556678899999 45666555555433   33444544 55778999999887    445   4444433 221   1


Q ss_pred             cccCCCCCCCceeeeccCChHHHHHHHHH
Q psy7609         113 FKLPEVGELFEEVTYIELQHPEAEKIIDE  141 (226)
Q Consensus       113 FsLP~~~e~fdEV~fvEL~~eeA~klV~k  141 (226)
                      +.... ...||-|+--+ +.|+|.+-|..
T Consensus       154 ~~~~~-~~~fD~vIvNd-dle~a~~~l~~  180 (186)
T 1ex7_A          154 LAYAE-TGAHDKVIVND-DLDKAYKELKD  180 (186)
T ss_dssp             HHHHT-TTCSSEEEECS-SHHHHHHHHHH
T ss_pred             Hhhcc-ccCCcEEEECc-CHHHHHHHHHH
Confidence            21111 13488776544 56676665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.33
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.36
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	89.71
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	84.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	84.05

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.6e-12  Score=103.08  Aligned_cols=108  Identities=17%  Similarity=0.278  Sum_probs=91.3

Q ss_pred             HHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhc--CCCCCCChHHHHHHH
Q psy7609          35 NRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKE--GKDDVPPDNVILEMK  110 (226)
Q Consensus        35 nrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~ee--GK~~V~Pe~AvleMK  110 (226)
                      .++++.+.+.++|+|||.||...+.|++-+..+  .|+...+|++.++.|...+|..+|....  ++. | |++++..|+
T Consensus        55 ~~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~-v-~~~~~~~~~  132 (172)
T d1yj5a2          55 VSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAP-V-SDMVMFSYR  132 (172)
T ss_dssp             HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCC-C-CHHHHHHHH
T ss_pred             HHHHHHHHHCCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCc-c-HHHHHHHHH
Confidence            346667778899999999999999998887776  5788889999999999999999998653  345 8 999999999


Q ss_pred             hccccCCCCCCCceeeeccC-----ChHHHHHHHHHHHH
Q psy7609         111 ANFKLPEVGELFEEVTYIEL-----QHPEAEKIIDEYNK  144 (226)
Q Consensus       111 AnFsLP~~~e~fdEV~fvEL-----~~eeA~klV~kYn~  144 (226)
                      ..|..|+..|.||+|..++.     ..++++++..+|++
T Consensus       133 ~~fe~P~~~Egf~~i~~i~~~~~~~~d~~~~kl~~qy~e  171 (172)
T d1yj5a2         133 KQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSE  171 (172)
T ss_dssp             HHCCCCCGGGSCSCEEEECCCCCTTSCHHHHHHHTSCCC
T ss_pred             HhCCCCCcccCCcEEEEECCccCCccCHHHHHHHHHhhc
Confidence            99999999999999987753     35678888888875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.36  E-value=0.0063  Score=43.50  Aligned_cols=66  Identities=17%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             cCCCcEEEeccCCChHHHhh--hhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhcc
Q psy7609          43 SRRRNYILDQTNVYVSAQKR--KMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANF  113 (226)
Q Consensus        43 rrrRNYILDQTNVy~sAqRR--KM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnF  113 (226)
                      ....+.|+|.||.+.+.+..  ++.-..|+....|++-++.|++.+|..+|..   .. + |++++..|-..|
T Consensus        76 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~-~-~~~~i~~~~~~~  143 (152)
T d1ly1a_          76 DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KA-V-PIDVLRSMYKSM  143 (152)
T ss_dssp             SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG---GC-C-CHHHHHHHHHHH
T ss_pred             ccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCC---CC-C-CHHHHHHHHHHH
Confidence            35568999999999876653  3334466766667777788999999888742   34 8 999988775543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=89.71  E-value=2.1  Score=29.39  Aligned_cols=116  Identities=15%  Similarity=0.139  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHh---hhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCC
Q psy7609          24 VQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQK---RKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDV  100 (226)
Q Consensus        24 d~L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqR---RKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V  100 (226)
                      +.......+.+..++..+....++.|+|-+..-...+.   ..+..+.++.-.-|++-|++|++.+|+.+|........-
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~  131 (176)
T d2bdta1          52 DELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGER  131 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHH
Confidence            33444555667777778888999999998755433332   223345566666677889999999999887532221101


Q ss_pred             CChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHHHHHHh
Q psy7609         101 PPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKN  145 (226)
Q Consensus       101 ~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kYn~E  145 (226)
                       ..+...+|..    +...+.+ -|.--.+..++..+.|+++-+.
T Consensus       132 -~~~~~~~~~~----~~~~~~~-~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         132 -CLELVEEFES----KGIDERY-FYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             -GGHHHHHHHH----TTCCTTS-EEECSSSCGGGHHHHHHHHHHC
T ss_pred             -HHHHHHHHHh----CCCCCeE-EEECCCCCHHHHHHHHHHHHhc
Confidence             2233343332    1111111 1222235667778888877654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=84.24  E-value=4.8  Score=27.72  Aligned_cols=98  Identities=11%  Similarity=-0.029  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhcccc-CcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Q psy7609          32 KCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYF-GFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMK  110 (226)
Q Consensus        32 kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~-GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMK  110 (226)
                      ..+...+...+....+.|+|.+.......+..+..+. +.....|.|-+++|++.+|...|.    .. . |+.+ ..+-
T Consensus        73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~----~~-~-~~~~-~~~~  145 (178)
T d1qhxa_          73 GAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG----DR-V-AGMA-AKQA  145 (178)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS----SS-C-TTHH-HHHT
T ss_pred             HHHHHHHHHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcC----Cc-c-hhhh-hhhh
Confidence            4556666777889999999998877777666666554 455666777888888988877652    23 3 5433 2222


Q ss_pred             hccccCCCCCCCceeeec-cCChHHHHHHH
Q psy7609         111 ANFKLPEVGELFEEVTYI-ELQHPEAEKII  139 (226)
Q Consensus       111 AnFsLP~~~e~fdEV~fv-EL~~eeA~klV  139 (226)
                      ..   .+...-+|-++-. .++.||+...|
T Consensus       146 ~~---~~~~~~~dl~IDts~~s~ee~a~~I  172 (178)
T d1qhxa_         146 YV---VHEGVEYDVEVDTTHKESIECAWAI  172 (178)
T ss_dssp             TG---GGTTCCCSEEEETTSSCHHHHHHHH
T ss_pred             hh---hhcCCCCCEEEECCCCCHHHHHHHH
Confidence            22   2222335555555 45666654444

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.05  E-value=1.4  Score=33.15  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             hhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHH----HHhcccc
Q psy7609          41 GFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILE----MKANFKL  115 (226)
Q Consensus        41 AarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~Avle----MKAnFsL  115 (226)
                      ........++|. +++...+-++.    .+.-..|++ .|+.|++++|+.+|.    .+   .++.+..    -+..+..
T Consensus        87 ~~~~g~~~~~~~-~~~~~~~l~~~----~~~~~~I~i~~~~~e~l~~RL~~R~----~~---~~e~i~~rl~~~~~~~~~  154 (190)
T d1lvga_          87 VQAMNRICVLDV-DLQGVRSIKKT----DLCPIYIFVQPPSLDVLEQRLRLRN----TE---TEESLAKRLAAARTDMES  154 (190)
T ss_dssp             HHHTTCEEEEEC-CHHHHHHHTTS----SCCCEEEEEECSCHHHHHHHHHHHT----CS---CHHHHHHHHHHHHHHTTG
T ss_pred             hhcCCCceeecc-hHhhhhhhhhc----cccceEEEEecchHHHHHHHHhhcc----cc---chHHHHHHHHHHHHHHHh
Confidence            344566788875 45555555543    233334444 456789999998874    23   4444443    3444566


Q ss_pred             CCCCCCCceeeeccCChHHHHHHHHH
Q psy7609         116 PEVGELFEEVTYIELQHPEAEKIIDE  141 (226)
Q Consensus       116 P~~~e~fdEV~fvEL~~eeA~klV~k  141 (226)
                      +....+||-|+.-+ +.|+|.+-|.+
T Consensus       155 ~~~~~~fd~iI~N~-dle~a~~~l~~  179 (190)
T d1lvga_         155 SKEPGLFDLVIIND-DLDKAYATLKQ  179 (190)
T ss_dssp             GGSTTTCSEEEECS-SHHHHHHHHHH
T ss_pred             hhhcCCCCEEEECc-CHHHHHHHHHH
Confidence            66667799877655 66777555543