Psyllid ID: psy7618
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 560 | 2.2.26 [Sep-21-2011] | |||||||
| P46871 | 742 | Kinesin-II 95 kDa subunit | yes | N/A | 0.369 | 0.278 | 0.509 | 2e-48 | |
| O15066 | 747 | Kinesin-like protein KIF3 | yes | N/A | 0.360 | 0.270 | 0.502 | 3e-47 | |
| Q61771 | 747 | Kinesin-like protein KIF3 | yes | N/A | 0.366 | 0.274 | 0.495 | 3e-47 | |
| Q9P2E2 | 1029 | Kinesin-like protein KIF1 | no | N/A | 0.357 | 0.194 | 0.483 | 2e-43 | |
| P46873 | 699 | Osmotic avoidance abnorma | yes | N/A | 0.382 | 0.306 | 0.465 | 7e-43 | |
| Q99PW8 | 1038 | Kinesin-like protein KIF1 | no | N/A | 0.357 | 0.192 | 0.474 | 2e-42 | |
| P46867 | 784 | Kinesin-like protein Klp6 | yes | N/A | 0.396 | 0.283 | 0.413 | 3e-42 | |
| Q29DY1 | 797 | Kinesin-like protein Klp6 | yes | N/A | 0.396 | 0.278 | 0.413 | 4e-42 | |
| P28741 | 701 | Kinesin-like protein KIF3 | no | N/A | 0.501 | 0.400 | 0.392 | 5e-42 | |
| P46869 | 786 | Kinesin-like protein FLA1 | N/A | N/A | 0.364 | 0.259 | 0.459 | 1e-41 |
| >sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 138/212 (65%), Gaps = 5/212 (2%)
Query: 286 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAK--LTLPCKGLRSVTCQSVEEIENCRK 343
+ +V YLE+YQ +IRDLL + D K + + K L S +SV+EIE+
Sbjct: 135 QQFLVRASYLEIYQEEIRDLLAKDQKKRLDLKERPDTGVYVKDLSSFVTKSVKEIEHVMT 194
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLK--VLNSKTGKALIHSKLNLVDLAGSECLQKS 401
G +R ST N++SSRSHAIFI+T++ L + KLNLVDLAGSE K+
Sbjct: 195 VGNNNRSVGSTNMNEHSSRSHAIFIITIECSELGVDGENHIRVGKLNLVDLAGSERQAKT 254
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKT-YIPYRDSLLTQLLQDSFGGNAKTLMIA 460
AT RLKE +INLSL A+ VIS+ V GK+ +IPYRDS LT+LLQDS GGNAKT+M+A
Sbjct: 255 GATGDRLKEATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDSLGGNAKTVMVA 314
Query: 461 NIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
N+GPA+ + ET+ TL YANRAK IKN P IN
Sbjct: 315 NMGPASYNFDETITTLRYANRAKNIKNKPKIN 346
|
Strongylocentrotus purpuratus (taxid: 7668) |
| >sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9P2E2|KIF17_HUMAN Kinesin-like protein KIF17 OS=Homo sapiens GN=KIF17 PE=2 SV=3 | Back alignment and function description |
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| >sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4 | Back alignment and function description |
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| >sp|Q99PW8|KIF17_MOUSE Kinesin-like protein KIF17 OS=Mus musculus GN=Kif17 PE=1 SV=1 | Back alignment and function description |
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| >sp|P46867|KLP68_DROME Kinesin-like protein Klp68D OS=Drosophila melanogaster GN=Klp68D PE=2 SV=2 | Back alignment and function description |
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| >sp|Q29DY1|KLP68_DROPS Kinesin-like protein Klp68D OS=Drosophila pseudoobscura pseudoobscura GN=Klp68D PE=3 SV=1 | Back alignment and function description |
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| >sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=2 | Back alignment and function description |
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| >sp|P46869|FLA10_CHLRE Kinesin-like protein FLA10 OS=Chlamydomonas reinhardtii GN=FLA10 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 560 | ||||||
| 124505007 | 1619 | kinesin-like protein, putative [Plasmodi | 0.787 | 0.272 | 0.321 | 9e-50 | |
| 307192948 | 729 | Kinesin-like protein KIF3B [Harpegnathos | 0.410 | 0.315 | 0.483 | 1e-48 | |
| 332025181 | 726 | Kinesin-like protein KIF3B [Acromyrmex e | 0.401 | 0.309 | 0.484 | 3e-48 | |
| 156383556 | 734 | predicted protein [Nematostella vectensi | 0.362 | 0.276 | 0.519 | 3e-48 | |
| 48115199 | 725 | PREDICTED: kinesin 2A [Apis mellifera] | 0.410 | 0.317 | 0.474 | 5e-48 | |
| 345481744 | 724 | PREDICTED: kinesin-like protein KIF3B is | 0.391 | 0.302 | 0.495 | 6e-48 | |
| 380021407 | 725 | PREDICTED: kinesin-like protein KIF3B is | 0.410 | 0.317 | 0.474 | 8e-48 | |
| 322785855 | 726 | hypothetical protein SINV_09599 [Solenop | 0.410 | 0.316 | 0.474 | 1e-47 | |
| 367001767 | 1232 | hypothetical protein TPHA_0E00890 [Tetra | 0.798 | 0.362 | 0.323 | 1e-47 | |
| 221055491 | 1419 | kinesin-related protein [Plasmodium know | 0.785 | 0.310 | 0.331 | 1e-47 |
| >gi|124505007|ref|XP_001351245.1| kinesin-like protein, putative [Plasmodium falciparum 3D7] gi|3758853|emb|CAB11138.1| kinesin-like protein, putative [Plasmodium falciparum 3D7] | Back alignment and taxonomy information |
|---|
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 255/498 (51%), Gaps = 57/498 (11%)
Query: 31 NIKVVVRCRPMNVPERK-AHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 89
NIKV+VRCRP+N E+ + E V++I+ + L+I + + + ++++FD
Sbjct: 15 NIKVIVRCRPLNEKEKNDINNEEVVRINNNEVILTINRNNEIYE-------KKYSFDYAC 67
Query: 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQI 149
Q ++ N + +V+ +L G+N T+F YGQTGTGKT+TMEG +E +Q
Sbjct: 68 DKDVDQKTLFNNYIYQIVDEVLQGFNCTLFCYGQTGTGKTYTMEGKILEH------LKQ- 120
Query: 150 FDFKQKEKRHKCI---VECCYLELYQGKIRDLLNVSRPTLFDT-----KAKLNIYHGRQS 201
+D +K ++ I + CY EL + + L+ +FD + K+ + G+++
Sbjct: 121 YDNNKKVDLNESINSDISYCY-ELCENEDTGLIFRVTKRIFDILNKRKEEKIRHFKGKKN 179
Query: 202 NGTQIFDFKQKEKRHKCIVE--------CCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP 253
IFD +K+ H ++ Y + + +N+ + +++ P
Sbjct: 180 ----IFD--EKDNEHINVINKETNGNNNNIINNNYNNLLCNKINIDKNDIYNNLKINKEP 233
Query: 254 CKGL-----RSVTCQSVEE--IENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLL 306
L R +TC V++ ++ R K + ++ YLE+Y ++ DLL
Sbjct: 234 NNLLVNEKSRDITCDVVQKCSVDKNRNNDMYQTFDDKNMYDFNIKISYLEIYNEELCDLL 293
Query: 307 NVSRPTL-------FDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDY 359
+ + + + K+K L L + S EEI K R+TA T +N
Sbjct: 294 SSTNENMKLRIYEDSNNKSK-GLNVDKLEEKSINSFEEIYYIICSAIKKRRTAETAYNKK 352
Query: 360 SSRSHAIFIVTLKVLN-SKTGKALIH-SKLNLVDLAGSECLQKSN--ATDIRLKECCEIN 415
SSRSH+IF +TL + + + G+++ KLNLVDLAGSE KS+ + IR +E C IN
Sbjct: 353 SSRSHSIFTITLIIKDINNVGESITKIGKLNLVDLAGSENALKSSYGSLKIRQQESCNIN 412
Query: 416 LSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVT 475
SLL + +VI+S + +YIPYRDS LT+LLQDS GG KT ++A I P++ ETL T
Sbjct: 413 QSLLTLGRVINSLIENSSYIPYRDSKLTRLLQDSLGGKTKTFIVATISPSSLCIDETLST 472
Query: 476 LEYANRAKKIKNAPNINF 493
L+Y RAK IKN P IN
Sbjct: 473 LDYVFRAKNIKNRPEINI 490
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Source: Plasmodium falciparum 3D7 Species: Plasmodium falciparum Genus: Plasmodium Family: Order: Haemosporida Class: Aconoidasida Phylum: Apicomplexa Superkingdom: Eukaryota |
| >gi|307192948|gb|EFN75964.1| Kinesin-like protein KIF3B [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|332025181|gb|EGI65361.1| Kinesin-like protein KIF3B [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|156383556|ref|XP_001632899.1| predicted protein [Nematostella vectensis] gi|156219962|gb|EDO40836.1| predicted protein [Nematostella vectensis] | Back alignment and taxonomy information |
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| >gi|48115199|ref|XP_393174.1| PREDICTED: kinesin 2A [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|345481744|ref|XP_003424442.1| PREDICTED: kinesin-like protein KIF3B isoform 1 [Nasonia vitripennis] gi|345481746|ref|XP_003424443.1| PREDICTED: kinesin-like protein KIF3B isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|380021407|ref|XP_003694557.1| PREDICTED: kinesin-like protein KIF3B isoform 1 [Apis florea] gi|380021409|ref|XP_003694558.1| PREDICTED: kinesin-like protein KIF3B isoform 2 [Apis florea] | Back alignment and taxonomy information |
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| >gi|322785855|gb|EFZ12474.1| hypothetical protein SINV_09599 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|367001767|ref|XP_003685618.1| hypothetical protein TPHA_0E00890 [Tetrapisispora phaffii CBS 4417] gi|357523917|emb|CCE63184.1| hypothetical protein TPHA_0E00890 [Tetrapisispora phaffii CBS 4417] | Back alignment and taxonomy information |
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| >gi|221055491|ref|XP_002258884.1| kinesin-related protein [Plasmodium knowlesi strain H] gi|193808954|emb|CAQ39657.1| kinesin-related protein, putative [Plasmodium knowlesi strain H] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 560 | ||||||
| UNIPROTKB|Q5F423 | 739 | KIF3B "Uncharacterized protein | 0.364 | 0.276 | 0.511 | 6.6e-80 | |
| UNIPROTKB|F1N020 | 743 | KIF3B "Uncharacterized protein | 0.364 | 0.274 | 0.507 | 4.2e-76 | |
| UNIPROTKB|E2QUS2 | 747 | KIF3B "Uncharacterized protein | 0.364 | 0.273 | 0.507 | 4.5e-76 | |
| MGI|MGI:107688 | 747 | Kif3b "kinesin family member 3 | 0.364 | 0.273 | 0.507 | 4.5e-76 | |
| UNIPROTKB|O15066 | 747 | KIF3B "Kinesin-like protein KI | 0.364 | 0.273 | 0.507 | 5.7e-76 | |
| UNIPROTKB|F1S519 | 757 | KIF3B "Uncharacterized protein | 0.364 | 0.269 | 0.507 | 6.8e-76 | |
| ZFIN|ZDB-GENE-050119-3 | 775 | kif3b "kinesin family member 3 | 0.410 | 0.296 | 0.469 | 1.5e-75 | |
| UNIPROTKB|F1NIP3 | 707 | KIF3A "Uncharacterized protein | 0.403 | 0.319 | 0.440 | 1.5e-74 | |
| UNIPROTKB|P46872 | 699 | KRP85 "Kinesin-II 85 kDa subun | 0.403 | 0.323 | 0.444 | 4e-74 | |
| UNIPROTKB|F1PQE6 | 451 | KIF3A "Uncharacterized protein | 0.403 | 0.501 | 0.440 | 3.2e-73 |
| UNIPROTKB|Q5F423 KIF3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 470 (170.5 bits), Expect = 6.6e-80, Sum P(3) = 6.6e-80
Identities = 107/209 (51%), Positives = 139/209 (66%)
Query: 289 IVECCYLELYQGKIRDLLNVSRPTLFDTKAK--LTLPCKGLRSVTCQSVEEIENCRKKGY 346
+V YLE+YQ +IRDLL+ + + K + + K L S +SV+EIE+ G
Sbjct: 139 LVRASYLEIYQEEIRDLLSKDQSKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGN 198
Query: 347 KSRKTASTYFNDYSSRSHAIFIVTLKVLN-SKTGKALIH-SKLNLVDLAGSECLQKSNAT 404
++R +T N++SSRSHAIF++T++ G+ I KLNLVDLAGSE K+ A
Sbjct: 199 QNRSVGATNMNEHSSRSHAIFVITIECSELGLDGENHIRVGKLNLVDLAGSERQAKTGAQ 258
Query: 405 DIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIG 463
RLKE +INLSL A+ VIS+ V GK T+IPYRDS LT+LLQDS GGNAKT+M+ANIG
Sbjct: 259 GERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANIG 318
Query: 464 PAASTYKETLVTLEYANRAKKIKNAPNIN 492
PA+ +ETL TL YANRAK IKN P +N
Sbjct: 319 PASYNVEETLTTLRYANRAKNIKNKPRVN 347
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| UNIPROTKB|F1N020 KIF3B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QUS2 KIF3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:107688 Kif3b "kinesin family member 3B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O15066 KIF3B "Kinesin-like protein KIF3B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S519 KIF3B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050119-3 kif3b "kinesin family member 3B" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NIP3 KIF3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P46872 KRP85 "Kinesin-II 85 kDa subunit" [Strongylocentrotus purpuratus (taxid:7668)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PQE6 KIF3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 560 | |||
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 9e-73 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-71 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 8e-66 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 2e-61 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 7e-61 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 9e-61 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 2e-60 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 4e-59 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-52 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 2e-51 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 2e-48 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-47 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 1e-46 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 2e-44 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 5e-43 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 3e-41 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 5e-41 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 9e-41 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 4e-39 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 2e-38 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 5e-36 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 2e-35 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 2e-34 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 6e-34 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-33 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 6e-33 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 2e-32 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 8e-32 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 5e-31 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 8e-30 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 1e-29 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 6e-26 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 5e-25 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 8e-24 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 2e-22 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 3e-21 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 7e-18 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 1e-13 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 2e-04 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 9e-73
Identities = 99/216 (45%), Positives = 131/216 (60%), Gaps = 9/216 (4%)
Query: 277 KSRKTAKKRHKCIVECCYLELYQGKIRDLLNV--SRPTLF---DTKAKLTLPCKGLRSVT 331
+ + +++ V YLE+Y KI DLL+ + L D K + + KGL V
Sbjct: 113 RIEERKERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLRIREDPKKGVYV--KGLTEVE 170
Query: 332 CQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVD 391
S EE+ + G K+R AST N+ SSRSHAIF +T++ N T ++ KLNLVD
Sbjct: 171 VTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRDTDGSVKTGKLNLVD 230
Query: 392 LAGSECLQKSN-ATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDS 449
LAGSE K+ A RLKE IN SL A+ VI++ + ++IPYRDS LT+LLQDS
Sbjct: 231 LAGSERASKTGAAGGRRLKEAANINKSLSALGNVINALAENQSSHIPYRDSKLTRLLQDS 290
Query: 450 FGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485
GGN+KTLMIANI P+ S Y+ETL TL +A+RAK I
Sbjct: 291 LGGNSKTLMIANISPSDSNYEETLSTLRFASRAKNI 326
|
Length = 326 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 560 | |||
| KOG0243|consensus | 1041 | 100.0 | ||
| KOG4280|consensus | 574 | 100.0 | ||
| KOG0245|consensus | 1221 | 100.0 | ||
| KOG0241|consensus | 1714 | 100.0 | ||
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0242|consensus | 675 | 100.0 | ||
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| KOG0240|consensus | 607 | 100.0 | ||
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| KOG0239|consensus | 670 | 100.0 | ||
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| KOG0247|consensus | 809 | 100.0 | ||
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246|consensus | 676 | 100.0 | ||
| KOG0244|consensus | 913 | 100.0 | ||
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 98.2 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 94.62 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 94.03 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 92.66 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 92.45 | |
| PRK06620 | 214 | hypothetical protein; Validated | 92.16 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 92.0 | |
| PRK12377 | 248 | putative replication protein; Provisional | 91.77 | |
| PRK08116 | 268 | hypothetical protein; Validated | 90.03 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.0 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 89.86 | |
| PRK09087 | 226 | hypothetical protein; Validated | 89.85 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 89.62 | |
| PRK06526 | 254 | transposase; Provisional | 89.13 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 89.08 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 89.01 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 88.98 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 88.16 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 87.85 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 87.8 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 87.74 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 86.93 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 86.86 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 86.7 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 86.65 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 86.31 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 85.96 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 85.94 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 85.72 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 85.14 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 84.97 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 84.97 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 84.82 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 84.55 | |
| PRK08727 | 233 | hypothetical protein; Validated | 84.48 | |
| PRK08181 | 269 | transposase; Validated | 84.2 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 84.11 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 84.07 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 83.72 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 83.67 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 83.56 | |
| KOG0243|consensus | 1041 | 83.52 | ||
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 83.42 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 83.18 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 82.81 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 82.39 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 82.34 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 81.95 | |
| PF01935 | 229 | DUF87: Domain of unknown function DUF87; InterPro: | 80.89 | |
| KOG0239|consensus | 670 | 80.7 | ||
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 80.29 |
| >KOG0243|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-91 Score=771.31 Aligned_cols=369 Identities=41% Similarity=0.627 Sum_probs=318.1
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
.+...||+|+|||||++..|....+..+|.+++....|.+...-. ...-.++|+||+||+|++.|++||+.+|.|
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~-----sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p 119 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIA-----SKQIDKTFTFDKVFGPESQQEDLYDQAVSP 119 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccc-----cccccceeecceeeCcchhHHHHHHHHHHH
Confidence 345679999999999999999999999999988766677754311 111468899999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc--------CCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhh
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG--------SQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRD 177 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G--------~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~d 177 (560)
+|+.|+.|||||||||||||+||||||.| .+.++|||||++.+||+.+.... ..|.|+
T Consensus 120 ~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvK------------- 185 (1041)
T KOG0243|consen 120 IIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVK------------- 185 (1041)
T ss_pred HHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEE-------------
Confidence 99999999999999999999999999999 56789999999999999887754 566666
Q ss_pred ccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCC
Q psy7618 178 LLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGL 257 (560)
Q Consensus 178 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~ 257 (560)
|||+|+|||+++|||++..... ..
T Consensus 186 --------------------------------------------VSfLELYNEEl~DLLa~~~~~~----~~-------- 209 (1041)
T KOG0243|consen 186 --------------------------------------------VSFLELYNEELTDLLASEDTSD----KK-------- 209 (1041)
T ss_pred --------------------------------------------EEehhhhhHHHHHhcCCccccc----cc--------
Confidence 7777778888888887664210 00
Q ss_pred cccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHH
Q psy7618 258 RSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEE 337 (560)
Q Consensus 258 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee 337 (560)
+++.. .++.. +.++|++|+||.++.|+++.|
T Consensus 210 -------------------------------------~~~k~----------~~~~~--~~kggV~vkGlEEi~V~~A~e 240 (1041)
T KOG0243|consen 210 -------------------------------------LRIKD----------DSTIV--DGKGGVIVKGLEEIIVTNADE 240 (1041)
T ss_pred -------------------------------------ccccc----------CCccc--CCcCcEEEecceeeeecchhH
Confidence 11111 11111 567899999999999999999
Q ss_pred HHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEe--CCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhh
Q psy7618 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLN--SKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEIN 415 (560)
Q Consensus 338 ~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~--~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN 415 (560)
++.+|.+|...|++|+|.||+.|||||+||+|+|.... ..+.+.++.|+|+||||||||.++++|+.+.|.+|++.||
T Consensus 241 i~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~IN 320 (1041)
T KOG0243|consen 241 IYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEIN 320 (1041)
T ss_pred HHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhh
Confidence 99999999999999999999999999999999997763 3344567889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccc-
Q psy7618 416 LSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFY- 494 (560)
Q Consensus 416 ~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~- 494 (560)
+||++||+||+||..+..|||||+|||||||||||||.+||+|||||||+..+++||++||.||.|||+|+|+|.+|..
T Consensus 321 qSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl 400 (1041)
T KOG0243|consen 321 QSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKL 400 (1041)
T ss_pred HHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cchhhhcHHH-HHHHHHHHHHHHHh
Q psy7618 495 REDRCHNEEK-MREKYKKALEDLAQ 518 (560)
Q Consensus 495 ~~~~~~~~~~-~~~~l~~~l~~l~~ 518 (560)
.++.+++.+- +|++||..|...+.
T Consensus 401 ~K~~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 401 MKKTLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3455555555 99999998866533
|
|
| >KOG4280|consensus | Back alignment and domain information |
|---|
| >KOG0245|consensus | Back alignment and domain information |
|---|
| >KOG0241|consensus | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0242|consensus | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >KOG0240|consensus | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >KOG0239|consensus | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >KOG0247|consensus | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246|consensus | Back alignment and domain information |
|---|
| >KOG0244|consensus | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0243|consensus | Back alignment and domain information |
|---|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
| >PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown | Back alignment and domain information |
|---|
| >KOG0239|consensus | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 560 | ||||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-47 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 1e-43 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 9e-40 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-39 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 2e-39 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 2e-39 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 2e-39 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 2e-39 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 2e-39 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 2e-39 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 2e-39 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 3e-38 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 3e-37 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 5e-36 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 4e-35 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 7e-34 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 8e-34 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 2e-33 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 2e-33 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 4e-33 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-32 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 2e-32 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-32 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-32 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 4e-32 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 6e-32 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 1e-30 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 4e-30 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 1e-29 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-29 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 2e-29 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 1e-27 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 1e-27 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 9e-27 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 1e-26 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-26 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 7e-26 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 9e-26 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 9e-26 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 1e-25 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-25 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 1e-25 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 5e-25 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 8e-25 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 3e-24 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 6e-24 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 1e-23 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 2e-20 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 6e-20 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 1e-18 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 1e-18 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 1e-18 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 1e-18 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 8e-18 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-17 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-15 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-13 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 1e-11 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 4e-11 |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
|
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 1e-86
Identities = 90/244 (36%), Positives = 136/244 (55%), Gaps = 10/244 (4%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVTCQSVEE 337
+ + ++ Y E+Y KIRDLL+VS+ L + K ++ KG S E+
Sbjct: 127 YAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPY-VKGATERFVSSPED 185
Query: 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSEC 397
+ ++G +R A T N++SSRSH++F++ +K N + K + KL LVDLAGSE
Sbjct: 186 VFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQK-KLSGKLYLVDLAGSEK 244
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKT 456
+ K+ A L E IN SL A+ VIS+ G T+IPYRDS LT++LQ+S GGNA+T
Sbjct: 245 VSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNART 304
Query: 457 LMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALEDL 516
++ PA+ ET TL++ RAK +KN +N E+ E+ + +Y+K E
Sbjct: 305 TIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVN---EE--LTAEEWKRRYEKEKEKN 359
Query: 517 AQCK 520
A+ K
Sbjct: 360 ARLK 363
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 560 | |||
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.97 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.96 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.92 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.61 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.35 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.76 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 91.67 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 86.45 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 86.11 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 85.06 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 84.62 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 84.62 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 83.99 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 82.28 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 82.1 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 81.66 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 81.41 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 81.38 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 80.54 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 80.04 |
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-92 Score=726.16 Aligned_cols=343 Identities=44% Similarity=0.668 Sum_probs=272.6
Q ss_pred CCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCC-CCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLK-PRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~-~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
.++|+|+|||||++..|...+...++.+++....+.+..+..... .......+.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 578999999999999998888888888887777777765543111 1123457899999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCCcc
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRPTL 186 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~~~ 186 (560)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++... ...|.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~------------------------ 138 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFL------------------------ 138 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEE------------------------
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEE------------------------
Confidence 99999999999999999999999999999999999999999999887432 33444
Q ss_pred cchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhH
Q psy7618 187 FDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVE 266 (560)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 266 (560)
|.+||+|||||+|+|||++.. .
T Consensus 139 ---------------------------------v~vS~~EIYnE~i~DLL~~~~--------~----------------- 160 (350)
T 2vvg_A 139 ---------------------------------VIGSYLELYNEEIRDLIKNNT--------K----------------- 160 (350)
T ss_dssp ---------------------------------EEEEEEEEETTEEEETTTTEE--------E-----------------
T ss_pred ---------------------------------EEEEEEEEeCCEEEEcccCCc--------C-----------------
Confidence 448899999999999986221 0
Q ss_pred HHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHH
Q psy7618 267 EIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGY 346 (560)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~ 346 (560)
++|.+ +..++++|.||+++.|.|++|++.+|..|.
T Consensus 161 ----------------------------l~i~e-----------------~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~ 195 (350)
T 2vvg_A 161 ----------------------------LPLKE-----------------DKTRGIYVDGLSMHRVTTAAELSALMDKGF 195 (350)
T ss_dssp ----------------------------ECEEE-----------------ETTTEEEETTCCCEEESSHHHHHHHHHHHH
T ss_pred ----------------------------ceeeE-----------------cCCCCEEecCCEEEEcCCHHHHHHHHHHHH
Confidence 33433 344589999999999999999999999999
Q ss_pred hhcccccccCCCCCCCcEEEEEEEEEEEeCCCC-ceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHH
Q psy7618 347 KSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTG-KALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVI 425 (560)
Q Consensus 347 ~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~-~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI 425 (560)
++|++++|.+|+.|||||+||+|+++......+ .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||
T Consensus 196 ~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI 275 (350)
T 2vvg_A 196 ANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVI 275 (350)
T ss_dssp HHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHH
T ss_pred hccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999988754433 3456899999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchh
Q psy7618 426 SSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDR 498 (560)
Q Consensus 426 ~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~ 498 (560)
.+|..++.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|+|+|.+|+++.+.
T Consensus 276 ~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 276 SKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp HHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred HHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 560 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 6e-44 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 2e-25 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-43 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-24 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 1e-42 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 7e-28 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 5e-42 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 1e-27 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 6e-42 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 3e-24 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 1e-40 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 1e-25 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 3e-39 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 2e-22 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 3e-36 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-24 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 8e-35 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 3e-21 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 156 bits (396), Expect = 6e-44
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 283 KKRHKCIVECCYLELYQGKIRDLLNVSRPTL-FDTKAKLTLPCKGLRSVTCQSVEEIENC 341
+ + ++ Y E+Y KIRDLL+VS+ L KG S +E+ +
Sbjct: 121 DENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDT 180
Query: 342 RKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKS 401
+G +R A T N++SSRSH+IF++ +K N++T + L KL LVDLAGSE + K+
Sbjct: 181 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLYLVDLAGSEKVSKT 239
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A L E IN SL A+ VIS+ G TY+PYRDS +T++LQDS GGN +T ++
Sbjct: 240 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 299
Query: 462 IGPAASTYKETLVTLEYANRAKKI 485
P++ ET TL + RAK I
Sbjct: 300 CSPSSYNESETKSTLLFGQRAKTI 323
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 560 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.8 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.77 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.42 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.03 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 87.59 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.43 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.26 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.05 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 82.27 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 82.02 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 80.51 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=7e-83 Score=666.69 Aligned_cols=344 Identities=36% Similarity=0.544 Sum_probs=287.9
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 110 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~ 110 (560)
+|+|+|||||+.+.|...+...++.+.+... +.... .....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~--------~~~~~~~f~FD~vf~~~~~q~~vy~~-v~~lv~~~ 70 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFT-VEHLW--------KDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSA 70 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTE-EEEEC--------SSSSEEEEECSEEECTTCCHHHHHHT-TTHHHHHH
T ss_pred CeEEEEEcCCCChhhcccCCCCeEEeCCCCe-EEecC--------CCCCceEEECCeecCCCCCHHHHHHH-HHHHHHHH
Confidence 4899999999999998777777776654433 32221 12356899999999999999999997 58999999
Q ss_pred hcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCCcccch
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRPTLFDT 189 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~~ 189 (560)
++|+|+||||||||||||||||+|+..++||+||++++||+.+.... ...|.
T Consensus 71 l~G~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~--------------------------- 123 (364)
T d1sdma_ 71 VDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFS--------------------------- 123 (364)
T ss_dssp HTTCEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEE---------------------------
T ss_pred hcCCceeeeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccce---------------------------
Confidence 99999999999999999999999999999999999999999887654 23333
Q ss_pred hhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHHHH
Q psy7618 190 KAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 269 (560)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 269 (560)
|.+||+|||+|.++|||.+...... .
T Consensus 124 ------------------------------v~~S~~EIyne~i~DLL~~~~~~~~----~-------------------- 149 (364)
T d1sdma_ 124 ------------------------------LKAYMVELYQDTLVDLLLPKQAKRL----K-------------------- 149 (364)
T ss_dssp ------------------------------EEEEEEEESSSCEEETTSCTTSCCC----C--------------------
T ss_pred ------------------------------EEEEEEEEeccccccccCccccccc----c--------------------
Confidence 4489999999999999976532100 0
Q ss_pred HhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHhhc
Q psy7618 270 NCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349 (560)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~R 349 (560)
+++ ..+...+++|+|++++.|.|++|++.++..|.++|
T Consensus 150 -------------------------l~~-----------------~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R 187 (364)
T d1sdma_ 150 -------------------------LDI-----------------KKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQR 187 (364)
T ss_dssp -------------------------CEE-----------------EECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHH
T ss_pred -------------------------cce-----------------eecccCccccccceeeeeCCHHHHHHHhhccceee
Confidence 222 23445689999999999999999999999999999
Q ss_pred ccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHHhhh
Q psy7618 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTV 429 (560)
Q Consensus 350 ~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~al~ 429 (560)
.+++|.+|..|||||+||+|++.+...... ....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+
T Consensus 188 ~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~-~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~ 266 (364)
T d1sdma_ 188 HTTGTLMNEQSSRSHLIVSVIIESTNLQTQ-AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALS 266 (364)
T ss_dssp CCCSSCTTCHHHHSEEEEEEEEEEEETTTC-CEEEEEEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccceEEEEEEEEeccCcc-eeeeEEEEeechhhccccccccccCceeeeccccccchhhHHHHHHHHH
Confidence 999999999999999999999998876654 4568999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchhhhcHHHHHHHH
Q psy7618 430 AGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKY 509 (560)
Q Consensus 430 ~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~~~~~~~~~~~l 509 (560)
.++.||||||||||+||+|+|||||+|+|||||||+..+++||++||+||++|++|+|.|.+|.... ++.+|
T Consensus 267 ~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~~--------~~~~l 338 (364)
T d1sdma_ 267 SGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSK--------EVARL 338 (364)
T ss_dssp HTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEECH--------HHHHH
T ss_pred cCCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcccCCHH--------HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997543 34455
Q ss_pred HHHHHHH
Q psy7618 510 KKALEDL 516 (560)
Q Consensus 510 ~~~l~~l 516 (560)
++++..|
T Consensus 339 ~~~i~~l 345 (364)
T d1sdma_ 339 KKLVSYW 345 (364)
T ss_dssp HTTTTCC
T ss_pred HHHHHHH
Confidence 5554444
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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