Psyllid ID: psy7620

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
ccEEEEEEEEEEccccEEEEEccEEEEEcccEEEEEEcccccEEEEEEccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEccEEEEEccccEEEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEccHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEccc
ccEEEEEEEEEccccEEEEEEEEEEEEEccccEEEEEccEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEccccEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEccHHHHHHHHHHHHHccccccccccccccEEEEEEccEEEEccc
mrqivsnqtvkiprglQCFVKArtvtvkgprgtlkrdFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYahfpincvtsenNTLLEIRNFLGEKYIRrvkmapgvkvsnskqkdeliiegndienvsRSAALIQQSTTVKNKDIRKFLDGlyvsekttvvtdas
mrqivsnqtvkiprglqcfvkartvtvkgprgtlkrdfkhlaidihmvnkrVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRvkmapgvkvsnskqkdeliiegndienvsrsAALIqqsttvknkdirkfldglyvsekttvvtdas
MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
********TVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVK*********LIIEGNDIENV**SAALIQQSTTVKNKDIRKFLDGLYVSEK********
MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK*TV*****
********TVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVT***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
Q963B7190 60S ribosomal protein L9 N/A N/A 0.989 0.984 0.808 5e-86
P50882190 60S ribosomal protein L9 yes N/A 0.978 0.973 0.806 2e-83
P32969192 60S ribosomal protein L9 yes N/A 0.973 0.958 0.668 3e-69
Q5IFJ7192 60S ribosomal protein L9 N/A N/A 0.973 0.958 0.663 4e-69
Q3SYR7192 60S ribosomal protein L9 yes N/A 0.973 0.958 0.668 4e-69
P51410192 60S ribosomal protein L9 yes N/A 0.973 0.958 0.663 2e-68
P17077192 60S ribosomal protein L9 yes N/A 0.973 0.958 0.663 4e-68
Q5R9Q7192 60S ribosomal protein L9 yes N/A 0.973 0.958 0.657 5e-68
Q90YW0192 60S ribosomal protein L9 N/A N/A 1.0 0.984 0.625 9e-67
Q95Y90189 60S ribosomal protein L9 yes N/A 0.978 0.978 0.591 4e-61
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1 Back     alignment and function desciption
 Score =  316 bits (810), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 152/188 (80%), Positives = 168/188 (89%), Gaps = 1/188 (0%)

Query: 1   MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG 60
           M+QIV+NQ VKIP GL   VK+R VTVKGPRG LKR+FKHLA+DI MVN RVLKVEKWFG
Sbjct: 1   MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRVLKVEKWFG 60

Query: 61  TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKY 120
           +KKE+AAVRTVCSH+ NM+KGVTKGF YKMR+ YAHFPINCVT+E N+++EIRNFLGEKY
Sbjct: 61  SKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKY 120

Query: 121 IRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVS 179
           IRRVKMAPGV V NS KQKDELIIEGN +E+VS SAALIQQSTTVKNKDIRKFLDGLYVS
Sbjct: 121 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 180

Query: 180 EKTTVVTD 187
           EKTTV  D
Sbjct: 181 EKTTVEVD 188

Spodoptera frugiperda (taxid: 7108)
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2 Back     alignment and function description
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1 Back     alignment and function description
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2 Back     alignment and function description
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1 Back     alignment and function description
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1 Back     alignment and function description
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
110671494189 putative ribosomal protein L9 [Diaphorin 1.0 1.0 1.0 1e-106
383855254190 PREDICTED: 60S ribosomal protein L9-like 0.989 0.984 0.845 3e-88
307187142190 60S ribosomal protein L9 [Camponotus flo 0.989 0.984 0.835 8e-88
332021672219 60S ribosomal protein L9 [Acromyrmex ech 0.989 0.853 0.840 1e-87
307208757190 60S ribosomal protein L9 [Harpegnathos s 0.989 0.984 0.840 2e-87
340715649190 PREDICTED: 60S ribosomal protein L9-like 0.989 0.984 0.835 4e-87
339283878193 60S ribosomal protein L9 [Laodelphax str 0.989 0.968 0.824 5e-87
66565444190 PREDICTED: 60S ribosomal protein L9 [Api 0.989 0.984 0.835 5e-87
70909653189 ribosomal protein L9e [Cicindela litorea 0.989 0.989 0.819 2e-86
264667321189 ribosomal protein L9 [Chrysomela tremula 0.989 0.989 0.813 2e-86
>gi|110671494|gb|ABG81998.1| putative ribosomal protein L9 [Diaphorina citri] Back     alignment and taxonomy information
 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG 60
           MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG
Sbjct: 1   MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG 60

Query: 61  TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKY 120
           TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKY
Sbjct: 61  TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKY 120

Query: 121 IRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSE 180
           IRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSE
Sbjct: 121 IRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSE 180

Query: 181 KTTVVTDAS 189
           KTTVVTDAS
Sbjct: 181 KTTVVTDAS 189

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855254|ref|XP_003703131.1| PREDICTED: 60S ribosomal protein L9-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307187142|gb|EFN72386.1| 60S ribosomal protein L9 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332021672|gb|EGI62031.1| 60S ribosomal protein L9 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307208757|gb|EFN86034.1| 60S ribosomal protein L9 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340715649|ref|XP_003396322.1| PREDICTED: 60S ribosomal protein L9-like [Bombus terrestris] gi|350417930|ref|XP_003491650.1| PREDICTED: 60S ribosomal protein L9-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|339283878|gb|AEJ38208.1| 60S ribosomal protein L9 [Laodelphax striatella] Back     alignment and taxonomy information
>gi|66565444|ref|XP_623506.1| PREDICTED: 60S ribosomal protein L9 [Apis mellifera] Back     alignment and taxonomy information
>gi|70909653|emb|CAJ17250.1| ribosomal protein L9e [Cicindela litorea] Back     alignment and taxonomy information
>gi|264667321|gb|ACY71246.1| ribosomal protein L9 [Chrysomela tremula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
FB|FBgn0015756190 RpL9 "Ribosomal protein L9" [D 0.978 0.973 0.806 2.7e-75
UNIPROTKB|E2R149192 RPL9 "Uncharacterized protein" 0.973 0.958 0.668 2e-63
UNIPROTKB|P32969192 RPL9 "60S ribosomal protein L9 0.973 0.958 0.668 2e-63
UNIPROTKB|I3LP78192 RPL9 "Uncharacterized protein" 0.973 0.958 0.668 2e-63
UNIPROTKB|Q3SYR7192 RPL9 "60S ribosomal protein L9 0.973 0.958 0.668 2.6e-63
MGI|MGI:1298373192 Rpl9 "ribosomal protein L9" [M 0.973 0.958 0.663 8.8e-63
RGD|62049192 Rpl9 "ribosomal protein L9" [R 0.973 0.958 0.663 1.4e-62
UNIPROTKB|G3N2H8191 G3N2H8 "Uncharacterized protei 0.973 0.963 0.661 4.8e-62
UNIPROTKB|G3MYL1192 Bt.105281 "Uncharacterized pro 0.973 0.958 0.652 6.2e-62
UNIPROTKB|G3N0T8192 G3N0T8 "Uncharacterized protei 0.973 0.958 0.657 1e-61
FB|FBgn0015756 RpL9 "Ribosomal protein L9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 150/186 (80%), Positives = 165/186 (88%)

Query:     1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG 60
             MR I SNQ VKIP+ ++  VKAR VT+ G RGTLKR FKHLA+D++M +KR LKVEKWFG
Sbjct:     1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60

Query:    61 TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKY 120
             TKKE+AAVRTVCSHI NM+KGVT GF YKMRA YAHFPINCVTSENNT++EIRNFLGEKY
Sbjct:    61 TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120

Query:   121 IRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVS 179
             IRRV+MAPGV V NS  QKDELI+EGNDIE+VS SAALIQQSTTVKNKDIRKFLDGLYVS
Sbjct:   121 IRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVS 180

Query:   180 EKTTVV 185
             EKTTVV
Sbjct:   181 EKTTVV 186
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS
GO:0006412 "translation" evidence=ISS
GO:0005840 "ribosome" evidence=IDA;NAS
GO:0019843 "rRNA binding" evidence=IEA
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
UNIPROTKB|E2R149 RPL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P32969 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP78 RPL9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYR7 RPL9 "60S ribosomal protein L9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1298373 Rpl9 "ribosomal protein L9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|62049 Rpl9 "ribosomal protein L9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2H8 G3N2H8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3MYL1 Bt.105281 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3N0T8 G3N0T8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UX91RL6_SULSONo assigned EC number0.29720.94700.9889yesN/A
Q2NFX3RL6_METSTNo assigned EC number0.38500.89940.9239yesN/A
C5A269RL6_THEGJNo assigned EC number0.42850.89940.9239yesN/A
A3DNC3RL6_STAMFNo assigned EC number0.39080.90470.9243yesN/A
Q975J6RL6_SULTONo assigned EC number0.35260.97350.9892yesN/A
P14030RL6_METVANo assigned EC number0.43100.89410.9285yesN/A
O26127RL6_METTHNo assigned EC number0.37930.88880.9491yesN/A
P49209RL91_ARATHNo assigned EC number0.51290.98940.9639noN/A
Q5IFJ7RL9_MACFANo assigned EC number0.66310.97350.9583N/AN/A
P05738RL9A_YEASTNo assigned EC number0.46840.98940.9790yesN/A
Q95Y90RL9_CAEELNo assigned EC number0.59130.97880.9788yesN/A
P51410RL9_MOUSENo assigned EC number0.66310.97350.9583yesN/A
O74905RL9B_SCHPONo assigned EC number0.53260.96290.9629noN/A
Q9SZX9RL92_ARATHNo assigned EC number0.53880.98940.9639yesN/A
B6YSN0RL6_THEONNo assigned EC number0.41800.88880.9130yesN/A
P54042RL6_METJANo assigned EC number0.38850.89940.9340yesN/A
Q9YF91RL6_AERPENo assigned EC number0.40440.91000.9450yesN/A
A0B9V4RL6_METTPNo assigned EC number0.38820.87300.9375yesN/A
A6VH01RL6_METM7No assigned EC number0.42520.89410.9285yesN/A
A4FWA5RL6_METM5No assigned EC number0.41370.89410.9285yesN/A
B8D5V4RL6_DESK1No assigned EC number0.41370.91000.9347yesN/A
Q8PV34RL6_METMANo assigned EC number0.38280.89940.9659yesN/A
Q74MR6RL6_NANEQNo assigned EC number0.33330.92590.9114yesN/A
Q6LXD7RL6_METMPNo assigned EC number0.40220.89410.9285yesN/A
A2BMD5RL6_HYPBUNo assigned EC number0.44130.89410.9086yesN/A
Q2FSG5RL6_METHJNo assigned EC number0.39320.86240.9261yesN/A
A5UL72RL6_METS3No assigned EC number0.37930.89410.9494yesN/A
P50882RL9_DROMENo assigned EC number0.80640.97880.9736yesN/A
P49210RL9_ORYSJNo assigned EC number0.56310.99470.9894yesN/A
Q54XI5RL9_DICDINo assigned EC number0.48100.97350.9787yesN/A
Q963B7RL9_SPOFRNo assigned EC number0.80850.98940.9842N/AN/A
A9A9P8RL6_METM6No assigned EC number0.42520.89410.9285yesN/A
P30707RL9_PEANo assigned EC number0.52600.98940.9689N/AN/A
Q5R9Q7RL9_PONABNo assigned EC number0.65770.97350.9583yesN/A
A6UQ60RL6_METVSNo assigned EC number0.43100.89410.9285yesN/A
Q3SYR7RL9_BOVINNo assigned EC number0.66840.97350.9583yesN/A
P17077RL9_RATNo assigned EC number0.66310.97350.9583yesN/A
A8AC04RL6_IGNH4No assigned EC number0.44930.79360.8064yesN/A
O59433RL6_PYRHONo assigned EC number0.40.89940.9239yesN/A
Q8U015RL6_PYRFUNo assigned EC number0.42280.89940.9239yesN/A
Q9V1V1RL6_PYRABNo assigned EC number0.41710.89940.9239yesN/A
Q5JJG4RL6_PYRKONo assigned EC number0.41800.88880.9130yesN/A
O05637RL6_SULACNo assigned EC number0.31690.93650.9365yesN/A
P32969RL9_HUMANNo assigned EC number0.66840.97350.9583yesN/A
P51401RL9B_YEASTNo assigned EC number0.47890.98940.9790yesN/A
Q90YW0RL9_ICTPUNo assigned EC number0.6251.00.9843N/AN/A
Q10232RL9A_SCHPONo assigned EC number0.54050.95760.9526yesN/A
Q0W1X2RL6_UNCMANo assigned EC number0.34880.88880.9491yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
PTZ00027190 PTZ00027, PTZ00027, 60S ribosomal protein L6; Prov 1e-85
PTZ00179189 PTZ00179, PTZ00179, 60S ribosomal protein L9; Prov 5e-59
PRK05518180 PRK05518, rpl6p, 50S ribosomal protein L6P; Review 2e-53
TIGR03653170 TIGR03653, arch_L6P, archaeal ribosomal protein L6 1e-49
COG0097178 COG0097, RplF, Ribosomal protein L6P/L9E [Translat 7e-39
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 8e-13
TIGR03654175 TIGR03654, L6_bact, ribosomal protein L6, bacteria 2e-10
PRK05498178 PRK05498, rplF, 50S ribosomal protein L6; Validate 6e-10
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 2e-07
CHL00140178 CHL00140, rpl6, ribosomal protein L6; Validated 2e-06
>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional Back     alignment and domain information 
 Score =  250 bits (639), Expect = 1e-85
 Identities = 110/190 (57%), Positives = 136/190 (71%), Gaps = 2/190 (1%)

Query: 1   MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMV-NKRVLKVEKWF 59
           M+ I S++ ++IP G+   VK+R VTV G  G L R F+HL +DI +  + + +KVE WF
Sbjct: 1   MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKDGKYIKVEMWF 60

Query: 60  GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 119
           GT   +A +RTVCSHI NM+ GVTK F YKMR  YAHFPIN   ++N   +EIRNFLGEK
Sbjct: 61  GTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEK 120

Query: 120 YIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYV 178
            +R VKM PGV V  S+  KDE+I+ G D+E VSRSAALI QST V+NKDIRKFLDG+YV
Sbjct: 121 RVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLVRNKDIRKFLDGIYV 180

Query: 179 SEKTTVVTDA 188
           SEK TV  D 
Sbjct: 181 SEKGTVDKDE 190

Length = 190
>gnl|CDD|140206 PTZ00179, PTZ00179, 60S ribosomal protein L9; Provisional Back     alignment and domain information
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P Back     alignment and domain information
>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|213843 TIGR03654, L6_bact, ribosomal protein L6, bacterial type Back     alignment and domain information
>gnl|CDD|235495 PRK05498, rplF, 50S ribosomal protein L6; Validated Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
PTZ00027190 60S ribosomal protein L6; Provisional 100.0
PRK05518180 rpl6p 50S ribosomal protein L6P; Reviewed 100.0
PTZ00179189 60S ribosomal protein L9; Provisional 100.0
TIGR03653170 arch_L6P archaeal ribosomal protein L6P. Members o 100.0
COG0097178 RplF Ribosomal protein L6P/L9E [Translation, ribos 100.0
CHL00140178 rpl6 ribosomal protein L6; Validated 100.0
TIGR03654175 L6_bact ribosomal protein L6, bacterial type. 100.0
PRK05498178 rplF 50S ribosomal protein L6; Validated 100.0
KOG3254|consensus211 100.0
KOG3255|consensus179 99.94
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 99.79
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 98.02
>PTZ00027 60S ribosomal protein L6; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7e-65  Score=415.39  Aligned_cols=185  Identities=58%  Similarity=0.919  Sum_probs=172.4

Q ss_pred             CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccc--cEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhh
Q psy7620           1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHL--AIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNM   78 (189)
Q Consensus         1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~--~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~Nm   78 (189)
                      |+.++...||+||+||+|+++++.|+|+||+|+|+++|++.  .+.+..++ +.+.+++|.++++.+|+|||+||||+||
T Consensus         1 ~~~~~~~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~~-~~i~v~~~~~~~k~~a~~Gt~rslI~Nm   79 (190)
T PTZ00027          1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKDG-KYIKVEMWFGTPSHLACIRTVCSHIKNM   79 (190)
T ss_pred             CcccccCCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeCC-CEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999973  45555577 8999999999999999999999999999


Q ss_pred             eeeeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecC-CCCEEEEEEccHhHHHHHHHH
Q psy7620          79 LKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAAL  157 (189)
Q Consensus        79 I~GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~-~~t~i~i~G~DKq~Vgq~AA~  157 (189)
                      |+||++||+++|+++|+|||+.++++.+|+.|.|+||||||||+.++||+|+++++++ .+|+|+|+|+|||+||||||+
T Consensus        80 I~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~AA~  159 (190)
T PTZ00027         80 MTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAAL  159 (190)
T ss_pred             hhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHHHHH
Confidence            9999999999999999999988666668999999999999999999999999999983 248999999999999999999


Q ss_pred             HhhhccccCcceeeeeCcEEEeeeeeeee
Q psy7620         158 IQQSTTVKNKDIRKFLDGLYVSEKTTVVT  186 (189)
Q Consensus       158 Ir~~~~yKgKgir~f~dgiyv~~K~~~~~  186 (189)
                      ||+.|..|+||+|+|+||||+++|++..+
T Consensus       160 I~~~~~~~~~d~r~f~dgiy~~~k~~~~~  188 (190)
T PTZ00027        160 IHQSTLVRNKDIRKFLDGIYVSEKGTVDK  188 (190)
T ss_pred             HHHHhcccCCCccEeecCEEEEEeeeecc
Confidence            99999999999999999999999996544

>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>PTZ00179 60S ribosomal protein L9; Provisional Back     alignment and domain information
>TIGR03653 arch_L6P archaeal ribosomal protein L6P Back     alignment and domain information
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00140 rpl6 ribosomal protein L6; Validated Back     alignment and domain information
>TIGR03654 L6_bact ribosomal protein L6, bacterial type Back     alignment and domain information
>PRK05498 rplF 50S ribosomal protein L6; Validated Back     alignment and domain information
>KOG3254|consensus Back     alignment and domain information
>KOG3255|consensus Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
2zkr_e192 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-70
3izr_F190 Localization Of The Large Subunit Ribosomal Protein 4e-59
3zf7_y189 High-resolution Cryo-electron Microscopy Structure 4e-45
1s1i_H191 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-44
4a17_E188 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-43
3jyw_H179 Structure Of The 60s Proteins For Eukaryotic Riboso 2e-43
3j21_F184 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-33
2cql_A100 Solution Structure Of The N-Terminal Domain Of Huma 7e-24
3g4s_E172 Co-Crystal Structure Of Tiamulin Bound To The Large 9e-23
1s72_E178 Refined Crystal Structure Of The Haloarcula Marismo 9e-23
1ffk_1177 Crystal Structure Of The Large Ribosomal Subunit Fr 9e-23
1eg0_J171 Fitting Of Components With Known Structure Into An 4e-06
1rl6_A177 Ribosomal Protein L6 Length = 177 4e-06
487d_J164 Seven Ribosomal Proteins Fitted To A Cryo-Electron 1e-05
>pdb|2ZKR|EE Chain e, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 192 Back     alignment and structure 
Iteration: 1

 Score =  261 bits (666), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 153/187 (81%), Gaps = 3/187 (1%)
Query: 1   MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRV--LKVEKW 58
           M+ I+SNQTV IP  +   +K RTV VKGPRGTL+RDF H+ +++ ++ K+   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 59  FGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGE 118
           +G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V  EN +L+EIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 119 KYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLY 177
           KYIRRV+M PGV  S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 178 VSEKTTV 184
           VSEK TV
Sbjct: 181 VSEKGTV 187
>pdb|3IZR|F Chain F, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 190 Back     alignment and structure
>pdb|3ZF7|YY Chain y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 189 Back     alignment and structure
>pdb|1S1I|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 191 Back     alignment and structure
>pdb|4A17|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 188 Back     alignment and structure
>pdb|3JYW|H Chain H, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 179 Back     alignment and structure
>pdb|3J21|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 184 Back     alignment and structure
>pdb|2CQL|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Ribosomal Protein L9 Length = 100 Back     alignment and structure
>pdb|3G4S|E Chain E, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 172 Back     alignment and structure
>pdb|1S72|E Chain E, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 178 Back     alignment and structure
>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|1RL6|A Chain A, Ribosomal Protein L6 Length = 177 Back     alignment and structure
>pdb|487D|J Chain J, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 164 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 1e-86
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 3e-85
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 1e-83
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 3e-82
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 3e-75
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 4e-33
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 1e-09
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 3e-09
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 1e-08
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 3e-08
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 4e-08
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191 Back     alignment and structure
 Score =  251 bits (644), Expect = 1e-86
 Identities = 89/190 (46%), Positives = 126/190 (66%), Gaps = 3/190 (1%)

Query: 1   MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG 60
           M+ I + Q +++P G+   +K+R V V GPRGTL ++ KH+ +    VN +++KV    G
Sbjct: 1   MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG 60

Query: 61  TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSEN--NTLLEIRNFLGE 118
            +K +AA+RTV S + NM+ GVTKG+ YKMR  YAHFPIN    E      +E+RNFLG+
Sbjct: 61  GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD 120

Query: 119 KYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLY 177
           K IR V +  GV +  S   KDE+++ GN +E+VS++AA +QQ   V+NKDIRKFLDG+Y
Sbjct: 121 KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY 180

Query: 178 VSEKTTVVTD 187
           VS K  +  D
Sbjct: 181 VSHKGFITED 190
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188 Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192 Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178 Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Length = 100 Back     alignment and structure
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 223 Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Length = 176 Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Length = 177 Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Length = 212 Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Length = 180 Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Length = 185 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 100.0
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 100.0
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 100.0
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 100.0
3j21_F184 50S ribosomal protein L6P; archaea, archaeal, KINK 100.0
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 100.0
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 100.0
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 100.0
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 100.0
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 100.0
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 100.0
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 100.0
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 99.96
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 84.13
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H Back     alignment and structure
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Back     alignment and structure
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 189
d1vqoe293 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeo 6e-47
d2cqla187 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Ho 5e-25
d1vqoe179 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon 2e-16
d2zjre278 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococc 2e-15
d2j01h171 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus 5e-15
d2qamg181 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherich 4e-14
d1rl6a175 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus 8e-14
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 93 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  146 bits (371), Expect = 6e-47
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 86  FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG 145
           + Y M   Y+HFP+      +   + I NFLGEK  RR  +     V      +EL + G
Sbjct: 1   WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSG 56

Query: 146 NDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 181
            DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 57  PDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 92
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79 Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78 Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71 Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d1vqoe293 Ribosomal protein L6 {Archaeon Haloarcula marismor 100.0
d1rl6a289 Ribosomal protein L6 {Bacillus stearothermophilus 99.97
d2j01h289 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.97
d2zjre190 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.97
d2qamg295 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.97
d2cqla187 Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 99.94
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 99.93
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 99.93
d2qamg181 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.92
d2zjre278 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.91
d2j01h171 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.88
d2cqla187 Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 80.19
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.4e-35  Score=212.36  Aligned_cols=93  Identities=39%  Similarity=0.638  Sum_probs=89.1

Q ss_pred             eeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhhcccc
Q psy7620          86 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVK  165 (189)
Q Consensus        86 f~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~~~yK  165 (189)
                      |+|+|+++++||||++.++  |+.+.++||||+++|+.++||+|++|++.  +++|+|+|+|+|+|||+||+|+|.|..|
T Consensus         1 f~Ykmk~vyaHFPi~v~v~--g~~v~I~NFlGEK~~R~~~i~~gv~v~v~--~deiiv~G~d~E~V~qtAA~Ieq~t~vk   76 (93)
T d1vqoe2           1 WEYGMEVFYSHFPMQVNVE--GDEVVIENFLGEKAPRRTTIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRIN   76 (93)
T ss_dssp             EEEEEEEECSSSCCEEEEE--TTEEEEESGGGCSSCEEEECCTTCEEEEE--TTEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             CEEEEEEEEEeCCeEEEEc--CCEEEEEeccCCceeEEEEecCCCeeEEc--CCEEEEEcCCHHHHHHHHHHHHHhhccC
Confidence            8999999999999997764  89999999999999999999999999994  6899999999999999999999999999


Q ss_pred             CcceeeeeCcEEEeeee
Q psy7620         166 NKDIRKFLDGLYVSEKT  182 (189)
Q Consensus       166 gKgir~f~dgiyv~~K~  182 (189)
                      +||+|+||||||++||+
T Consensus        77 ~kD~R~FlDGIYv~eKp   93 (93)
T d1vqoe2          77 DKDVRVFQDGVYITRKP   93 (93)
T ss_dssp             SSCTTTCCCEEEEEECC
T ss_pred             CCCccEeecCEEEEecC
Confidence            99999999999999995
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure