Psyllid ID: psy7654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
Protein Sequence
MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPAP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccHHHHcHHHHcccccccccccEEEccccHHHHHHHHHHHccccccccccccEEccccEEEEEEcccccEEEEEccccEEEccEEEEEccccccccccEEccccccHHHHHHHHHcccccccEEEEEccccccccccccccEEcccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEcccccccccccccccccccccEEEEEcEEEccccccEEEEccccHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccHHHHccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccHHHcccccccccEccccccEEEcccccHHHHHHHHHHHcccccccccccEEEEccEEEEEEEccccEEEEEEccccEEEEcEEEEcccHHHHcccccEEEccccHHHHHHHHHcEEEcEEEEEEEcccccccccEEEEccEEEEccccEEEcccccHHHHHHHHHcccccEcEEEEEEcccccccccccEEEEEcccccccccccccccccccHHHHHHcccccccccccEEEEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccEEEEEcccccccccHHHccccccccccccEEEEEccccccccccHHHHHHHcHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mdflgkaqnsldasdsWFETSAKRYNSFvthegcedtvwkkggYGNVLKLLLKqmpgqtpidlgkklllnkevtkinwedangvlvtcadgsqysadKVLITVSLGvfksdlitfvpplppqkkniieslflgTVDKVFVrfpqkwwpddirgynffwthddkknplfkdtavvdgapwisLFLGTVDKVFVrfpqkwwpddvrgynffwthddeknplfkdtavvdgapwIVDLYGfylttedpltflgwISGASARFMETLSDEQIKTESMKAFRFFlganytipepsrvfhsswgtnkhfkgsYSIYTLTTdkmnasrhdleaplsngqgkQVLLFAgeasnehqygtvngavETGWREAdrilksdpap
Flexible Loop (DISEMBL)
mdflgkaqnsldasdsWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVrfpqkwwpddIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRfpqkwwpddVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREadrilksdpap
Low Complexity Region (SEG)
MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPAP
Disordered region (IsUnstruct)
****************WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTD********************VLLFAGEA***HQYGTVNGAVETGW*************
Disordered Region (DISOPRED)
MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA*
Disordered Region (DISEMBL)
*************SDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPAP
Disordered Region (DISPRO)
MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	373	2.2.26 [Sep-21-2011]
Q865R1	512	Peroxisomal N(1)-acetyl-s	yes	N/A	0.694	0.505	0.288	8e-25
Q8C0L6	504	Peroxisomal N(1)-acetyl-s	yes	N/A	0.694	0.513	0.277	5e-23
Q6QHF9	649	Peroxisomal N(1)-acetyl-s	no	N/A	0.705	0.405	0.276	5e-22
Q9NWM0	555	Spermine oxidase OS=Homo	no	N/A	0.603	0.405	0.273	1e-21
Q99K82	555	Spermine oxidase OS=Mus m	no	N/A	0.603	0.405	0.273	2e-21
Q9SU79	533	Probable polyamine oxidas	yes	N/A	0.702	0.491	0.274	2e-19
O64411	500	Polyamine oxidase OS=Zea	N/A	N/A	0.603	0.45	0.257	4e-18
Q9FNA2	472	Polyamine oxidase 1 OS=Ar	no	N/A	0.584	0.461	0.249	3e-14
Q8NB78	822	Lysine-specific histone d	no	N/A	0.613	0.278	0.249	1e-12
Q8CIG3	826	Lysine-specific histone d	no	N/A	0.611	0.276	0.246	1e-12

>sp|Q865R1|PAOX_BOVIN Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Bos taurus GN=PAOX PE=1 SV=3

 Score =  114 bits (286), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 148/340 (43%), Gaps = 81/340 (23%)

Query: 43  GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE------DANG----VLVTCADGS 92
           GY  +   ++  +P          ++ +K V  I+W        A G    VLV C DG 
Sbjct: 225 GYQGLTDCIMASLPKDV-------MVFDKPVKTIHWNGSFREASAPGETFPVLVECEDGD 277

Query: 93  QYSADKVLITVSLGVFKSDLITFV-PPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDI 151
            + A  V++TV LG FK  L TF  PPLP +K                         + I
Sbjct: 278 CFPAHHVVVTVPLGFFKKHLDTFFEPPLPTEKV------------------------EAI 313

Query: 152 RGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWT 211
           R   F                            GT +K+F+ F + +W  D +     W 
Sbjct: 314 RKIGF----------------------------GTNNKIFLEFEEPFWEPDCQHIQVVW- 344

Query: 212 HDDEKNPLFKDTAVVDGAPWIVDLYGFYLTT--EDPLTFLGWISGASARFMETLSDEQIK 269
             ++ +PL +DTA      W   L GF++    +      G+I+G  + FMETLSDE + 
Sbjct: 345 --EDMSPL-EDTAPELQDAWFKKLIGFWVLPPFQASHVLCGFIAGLESEFMETLSDEDVL 401

Query: 270 TESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPL- 328
               +  R   G N  +P P  +  S W +  + +GSYS   + +   +  R  L  PL 
Sbjct: 402 RSLTQVLRRVTG-NPQLPAPRSMLRSCWHSAPYTRGSYSYVAVGSSGDDMDR--LAQPLP 458

Query: 329 SNGQGKQV-LLFAGEASNEHQYGTVNGAVETGWREADRIL 367
           S+G+G Q+ +LFAGEA++   Y T +GA+ +GWREADR++
Sbjct: 459 SDGKGAQLQVLFAGEATHRTFYSTTHGALLSGWREADRLM 498

Flavoenzyme which catalyzes the oxidation of N(1)-acetylspermine to spermidine and is thus involved in the polyamine back-conversion. Can also oxidize N(1)-acetylspermidine to putrescine. Substrate specificity: N(1)-acetylspermine = N(1)-acetylspermidine > N(1),N(12)-diacylspermine >> spermine. Does not oxidize spermidine. Plays an important role in the regulation of polyamine intracellular concentration.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 5EC: .EC: 3EC: .EC: 1EC: 3

>sp|Q8C0L6|PAOX_MOUSE Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Mus musculus GN=Paox PE=1 SV=3

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 144/342 (42%), Gaps = 83/342 (24%)

Query: 42  GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE----------DANGVLVTCADG 91
           GGY  +   +L  +P  T       +  +K V  I+W           +   VLV C DG
Sbjct: 216 GGYQGLTDRILASLPKDT-------VAFDKPVKTIHWNGSFQEAAFPGETFPVLVECEDG 268

Query: 92  SQYSADKVLITVSLGVFKSDLITFV-PPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
           ++  A  V++TV LG  K    TF  PPLP +K   I+                      
Sbjct: 269 ARLPAHHVIVTVPLGFLKEHQDTFFEPPLPAKKAEAIKK--------------------- 307

Query: 151 IRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFW 210
                                          L  GT +K+F+ F + +W  D +     W
Sbjct: 308 -------------------------------LGFGTNNKIFLEFEEPFWEPDCQFIQVVW 336

Query: 211 THDDEKNPLFKDTAVVDGAPWIVDLYGFYL--TTEDPLTFLGWISGASARFMETLSDEQI 268
              ++ +PL +DTA+     W   L GF +  + E      G+I+G  + FMETLSDE++
Sbjct: 337 ---EDTSPL-QDTALSLQDTWFKKLIGFLVQPSFESSHVLCGFIAGLESEFMETLSDEEV 392

Query: 269 KTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTL--TTDKMNASRHDLEA 326
                +  R   G N  +P    V  S W +  + +GSYS   +  T D ++     L  
Sbjct: 393 LLSLTQVLRRVTG-NPQLPAAKSVRRSQWHSAPYTRGSYSYVAVGSTGDDLDLMAQPLP- 450

Query: 327 PLSNGQGKQV-LLFAGEASNEHQYGTVNGAVETGWREADRIL 367
              +G G Q+ +LFAGEA++   Y T +GA+ +GWREADR++
Sbjct: 451 --EDGTGTQLQVLFAGEATHRTFYSTTHGALLSGWREADRLV 490

Flavoenzyme which catalyzes the oxidation of N(1)-acetylspermine to spermidine and is thus involved in the polyamine back-conversion. Can also oxidize N(1)-acetylspermidine to putrescine. Substrate specificity: N(1)-acetylspermine = N(1)-acetylspermidine > N(1),N(12)-diacylspermine >> spermine. Does not oxidize spermidine. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q6QHF9|PAOX_HUMAN Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Homo sapiens GN=PAOX PE=1 SV=3

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 146/351 (41%), Gaps = 88/351 (25%)

Query: 36  DTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG------------ 83
           D  + KG Y  +   ++  +P  T       ++  K V  I+W   NG            
Sbjct: 356 DCTFSKG-YQGLTNCMMAALPEDT-------VVFEKPVKTIHW---NGSFQEAAFPGETF 404

Query: 84  -VLVTCADGSQYSADKVLITVSLGVFKSDLITFV-PPLPPQKKNIIESLFLGTVDKVFVR 141
            V V C DG ++ A  V++TV LG  +  L TF  PPLP +K                  
Sbjct: 405 PVSVECEDGDRFPAHHVIVTVPLGFLREHLDTFFDPPLPAEKA----------------- 447

Query: 142 FPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPD 201
                  + IR   F                            GT +K+F+ F + +W  
Sbjct: 448 -------EAIRKIGF----------------------------GTNNKIFLEFEEPFWEP 472

Query: 202 DVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE--DPLTFLGWISGASARF 259
           D +     W   ++ +PL +D A      W   L GF +           G+I+G  + F
Sbjct: 473 DCQLIQLVW---EDTSPL-EDAAPELQDAWFRKLIGFVVLPAFASVHVLCGFIAGLESEF 528

Query: 260 METLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNA 319
           METLSDE++     +  R   G N  +P P  V  S W +  + +GSYS   + +   + 
Sbjct: 529 METLSDEEVLLCLTQVLRRVTG-NPRLPAPKSVLRSRWHSAPYTRGSYSYVAVGSTGGDL 587

Query: 320 SRHDLEAPL-SNGQGKQV-LLFAGEASNEHQYGTVNGAVETGWREADRILK 368
               L  PL ++G G Q+ +LFAGEA++   Y T +GA+ +GWREADR+L 
Sbjct: 588 DL--LAQPLPADGAGAQLQILFAGEATHRTFYSTTHGALLSGWREADRLLS 636

Flavoenzyme which catalyzes the oxidation of N(1)-acetylspermine to spermidine and is thus involved in the polyamine back-conversion. Can also oxidize N(1)-acetylspermidine to putrescine. Substrate specificity: N(1)-acetylspermine = N(1)-acetylspermidine > N(1),N(12)-diacylspermine >> spermine. Does not oxidize spermidine. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q9NWM0|SMOX_HUMAN Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 118/293 (40%), Gaps = 68/293 (23%)

Query: 84  VLVTCADGSQYSADKVLITVSLGVFKSDLITFVPP-LPPQKKNIIESLFLGTVDKVFVRF 142
           V+V C D     AD V++TVSLGV K    +F  P LP +K   I               
Sbjct: 313 VVVECEDCELIPADHVIVTVSLGVLKRQYTSFFRPGLPTEKVAAIHR------------- 359

Query: 143 PQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDD 202
                                                  L +GT DK+F+ F + +W  +
Sbjct: 360 ---------------------------------------LGIGTTDKIFLEFEEPFWGPE 380

Query: 203 VRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF---YLTTEDPLTFLGWISGASARF 259
                F W  + E + L     +     W   + GF   Y          GWI G  A  
Sbjct: 381 CNSLQFVWEDEAESHTLTYPPEL-----WYRKICGFDVLYPPERYGHVLSGWICGEEALV 435

Query: 260 METLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNA 319
           ME   DE +     +  R F G N  IP+P R+  S+WG+N +F+GSYS   + +   + 
Sbjct: 436 MEKCDDEAVAEICTEMLRQFTG-NPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADV 494

Query: 320 SRHDLEAPL----SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368
            +  L  PL    S+      +LF+GEA++   Y T +GA+ +G REA R+++
Sbjct: 495 EK--LAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIE 545

Flavoenzyme which catalyzes the oxidation of spermine to spermidine. Can also use N(1)-acetylspermine and spermidine as substrates, with different affinity depending on the isoform (isozyme) and on the experimental conditions. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs. May contribute to beta-alanine production via aldehyde dehydrogenase conversion of 3-amino-propanal.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q99K82|SMOX_MOUSE Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 117/293 (39%), Gaps = 68/293 (23%)

Query: 84  VLVTCADGSQYSADKVLITVSLGVFKSDLITFV-PPLPPQKKNIIESLFLGTVDKVFVRF 142
           V+V C D     AD V++TVSLGV K    +F  P LP +K   I               
Sbjct: 313 VVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPCLPTEKVAAIHR------------- 359

Query: 143 PQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDD 202
                                                  L +GT DK+F+ F + +W  +
Sbjct: 360 ---------------------------------------LGIGTTDKIFLEFEEPFWGPE 380

Query: 203 VRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF---YLTTEDPLTFLGWISGASARF 259
                F W  + E   L     +     W   + GF   Y          GWI G  A  
Sbjct: 381 CNSLQFVWEDEAESCTLTYPPEL-----WYRKICGFDVLYPPERYGHVLSGWICGEEALV 435

Query: 260 METLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNA 319
           ME   DE +     +  R F G N  IP+P R+  S+WG+N +F+GSYS   + +   + 
Sbjct: 436 MERCDDEAVAEICTEMLRQFTG-NPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADV 494

Query: 320 SRHDLEAPL----SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368
            +  L  PL    S+      +LF+GEA++   Y T +GA+ +G REA R+++
Sbjct: 495 EK--LAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIE 545

Flavoenzyme which catalyzes the oxidation of spermine to spermidine. Can also use N(1)-acetylspermine and spermidine as substrates, with different affinity depending on the isoform (isozyme) and on the experimental conditions. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs. May contribute to beta-alanine production via aldehyde dehydrogenase conversion of 3-amino-propanal.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9SU79|PAO5_ARATH Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 151/371 (40%), Gaps = 109/371 (29%)

Query: 33  GCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS 92
           G E T+ K  GY +V+  L   +P          + LN++VTKI W+ +N V +  +DGS
Sbjct: 231 GEEITIAK--GYLSVIHHLASVLPQGV-------IQLNRKVTKIEWQ-SNEVKLHFSDGS 280

Query: 93  QYSADKVLITVSLGVFKSDLIT----FVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWP 148
              AD V++TVSLGV K+ + T    F PPLP  K + I  L  G V+K+FV   Q+ +P
Sbjct: 281 VVFADHVIVTVSLGVLKAGIETDAELFSPPLPDFKSDAIRRLGYGVVNKLFVEMSQRKFP 340

Query: 149 DDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNF 208
                        D+++  F+                     FV+ P  WW    R    
Sbjct: 341 S-------LQLVFDREDSEFR---------------------FVKIP--WWMR--RTATI 368

Query: 209 FWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQI 268
              H + K                                L W +G  A  +E L+DE+I
Sbjct: 369 TPIHSNSK------------------------------VLLSWFAGKEALELEKLTDEEI 398

Query: 269 KTESMKAFRFFLGANYT--IPEP---------------SRVFHSSWGTNKHFKGSYSIYT 311
           K   M       G        +P               ++V  S WG++  F+GSYS   
Sbjct: 399 KDAVMTTISCLTGKEVKNDTAKPLTNGSLNDDDEAMKITKVLKSKWGSDPLFRGSYSYVA 458

Query: 312 L--TTDKMNASRHDLEAPLSNGQGKQV------------LLFAGEASNEHQYGTVNGAVE 357
           +  + D ++A    L  P  N +  QV            ++FAGEA++   Y T +GA  
Sbjct: 459 VGSSGDDLDAMAEPL--PKINKKVGQVNGHDQAKVHELQVMFAGEATHRTHYSTTHGAYY 516

Query: 358 TGWREADRILK 368
           +G REA+R+LK
Sbjct: 517 SGLREANRLLK 527

Flavoenzyme that catalyzes the oxidation of the secondary amino group of polyamines.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: -

>sp|O64411|PAO_MAIZE Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 78/303 (25%)

Query: 66  KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
           +L LNK V +I +    GV V   D S YSAD V+++ SLGV +SDLI F P LP  K  
Sbjct: 258 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 316

Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
            I    +    K+F++FP+K+WP+  +G  FF                            
Sbjct: 317 AIYQFDMAVYTKIFLKFPRKFWPEG-KGREFF---------------------------- 347

Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
                        +    RGY   W   +++ P                         D 
Sbjct: 348 ------------LYASSRRGYYGVWQEFEKQYP-------------------------DA 370

Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFR-FFLGANYTIPEPSRVFHSSWGTNKHFK 304
              L  ++   +R +E  SDEQ K E M+  R  F G +  +P+ + +    W +++ +K
Sbjct: 371 NVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKD--VPDATDILVPRWWSDRFYK 428

Query: 305 GSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREAD 364
           G++S + +  ++    +  L AP+        + F GE ++EH  G V+GA  +G   A+
Sbjct: 429 GTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTGEHTSEHYNGYVHGAYLSGIDSAE 480

Query: 365 RIL 367
            ++
Sbjct: 481 ILI 483

Catalyzes the oxidation of the secondary amino group of polyamines (spermine, spermidine and their acetyl derivatives). Plays an important role in the regulation of polyamine intracellular concentration.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9FNA2|PAO1_ARATH Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 99/317 (31%)

Query: 63  LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQ 122
           L  +L LN+ V ++  +  NGV+V   DGS Y A+ V+++ S+GV +SDL++F P LP  
Sbjct: 203 LDYRLKLNQVVREVQ-QSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSFQPLLPRW 261

Query: 123 KKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISL 182
           K   I+                     D+  Y                            
Sbjct: 262 KTEAIQKC-------------------DVMVYT--------------------------- 275

Query: 183 FLGTVDKVFVRFPQKWWP-----------DDVRGYNFFWTHDDEKNPLFKDTAVVDGAPW 231
                 K+F++FPQ +WP            + RGY  FW H +   P         G+  
Sbjct: 276 ------KIFLKFPQCFWPCGPGQEFFIYAHEQRGYFTFWQHMENAYP---------GSNI 320

Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
           +V      LT E             ++ +E  SD++   E+M   R   GA  TIP  + 
Sbjct: 321 LV----VTLTNEQ------------SKRVEAQSDQETMKEAMSVLRDMFGA--TIPYATD 362

Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
           +    W  N+  +GSYS Y + +D  N    +++AP+        + F GE ++E   G 
Sbjct: 363 ILVPRWWNNRFQRGSYSNYPMISD--NQLLQNIKAPVGR------IFFTGEHTSEKFSGY 414

Query: 352 VNGAVETGWREADRILK 368
           V+G    G   +  +L+
Sbjct: 415 VHGGYLAGIDTSKSLLE 431

Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine, norspermine and N(1)-acetylspermine. Substrate preference is norspermine > spermine > N(1)-acetylspermine. No activity detected when putrescine, spermidine or N(1)-acetylspermidine are used as substrates. Plays an important role in the regulation of polyamine intracellular concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8NB78|KDM1B_HUMAN Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=3

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 116/305 (38%), Gaps = 76/305 (24%)

Query: 64  GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
           G  + L   V  I++   + V VT  DG+ YSA KVL+TV L + +   I F PPL  +K
Sbjct: 589 GLDIQLKSPVQCIDY-SGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 647

Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
              I                                                     SL 
Sbjct: 648 MKAIN----------------------------------------------------SLG 655

Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFW--THDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
            G ++K+ ++FP ++W   V+G +FF        K  LF      D  P           
Sbjct: 656 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF--AVFYDMDP----------- 702

Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
            +     +  I+G +   + TL D+Q+  + M   R        +P+P++ F + W T+ 
Sbjct: 703 QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ-EVPDPTKYFVTRWSTDP 761

Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
             + +YS       K   S    +    + QG   + FAGEA+N H   TV GA  +G R
Sbjct: 762 WIQMAYSFV-----KTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVR 814

Query: 362 EADRI 366
           EA +I
Sbjct: 815 EASKI 819

Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8CIG3|KDM1B_MOUSE Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1b PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 115/304 (37%), Gaps = 76/304 (25%)

Query: 64  GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
           G  + L   V  I++   + V VT  DG  +SA KVL+TV L + +   I F PPL  +K
Sbjct: 595 GLDIRLKSPVQSIDY-TGDEVQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKK 653

Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
              I                                                     SL 
Sbjct: 654 MKAIN----------------------------------------------------SLG 661

Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
            G ++K+ ++FP ++W   V+G +FF               V   A        FY    
Sbjct: 662 AGIIEKIALQFPYRFWDSKVQGADFF-------------GHVPPSASQRGLFAVFYDMDS 708

Query: 244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHF 303
                +  I+G +   + T+ D+Q+  + M   R        IPEP++ F + W T    
Sbjct: 709 QQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQ-EIPEPTKYFVTRWSTEPWI 767

Query: 304 KGSYS-IYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWRE 362
           + +YS + T  + +     +D+ A    G     + FAGEA+N H   TV GA  +G RE
Sbjct: 768 QMAYSFVKTFGSGEA----YDIIAEEIQG----TVFFAGEATNRHFPQTVTGAYLSGVRE 819

Query: 363 ADRI 366
           A +I
Sbjct: 820 ASKI 823

Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
328723284	475	PREDICTED: peroxisomal N(1)-acetyl-sperm	0.820	0.644	0.358	5e-54
322795354	838	hypothetical protein SINV_80022 [Solenop	0.833	0.371	0.338	1e-52
312373967	1048	hypothetical protein AND_16683 [Anophele	0.823	0.292	0.352	3e-52
332019665	755	Peroxisomal N(1)-acetyl-spermine/spermid	0.833	0.411	0.327	6e-52
332019664	563	Peroxisomal N(1)-acetyl-spermine/spermid	0.833	0.552	0.322	4e-51
158287397	486	AGAP011207-PA [Anopheles gambiae str. PE	0.823	0.631	0.350	4e-51
345483413	481	PREDICTED: peroxisomal N(1)-acetyl-sperm	0.817	0.634	0.339	8e-51
270002494	931	hypothetical protein TcasGA2_TC004564 [T	0.857	0.343	0.328	3e-50
307214267	474	Peroxisomal N(1)-acetyl-spermine/spermid	0.825	0.649	0.333	8e-50
170065849	947	spermine oxidase [Culex quinquefasciatus	0.825	0.325	0.332	2e-49

>gi|328723284|ref|XP_001948577.2| PREDICTED: peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [Acyrthosiphon pisum]

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 185/363 (50%), Gaps = 57/363 (15%)

Query: 8   QNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP-IDLGKK 66
           QNS + SDSWFE SA   +++ +  G     WK  GY  V+ L+ ++   +   + +  K
Sbjct: 164 QNSYNGSDSWFEASAINIDTYKSCPGYPAISWKSKGYSTVIDLMQEKFNDEVEDLHIKDK 223

Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLIT-FVPPLPPQKKN 125
           ++  KEV KI W   +   V CAD S++ A  +L T+SLGV K+     F P LP  K  
Sbjct: 224 VIFGKEVVKIYWS-GDQAEVLCADNSRFKAQCILTTMSLGVLKNVCNELFEPELPEYKLK 282

Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
            I++                                                    L +G
Sbjct: 283 AIQN----------------------------------------------------LGIG 290

Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
           TVDK+F++FP  WW ++  G++F W+ DD++    K+     G  ++ D++GFY+    P
Sbjct: 291 TVDKLFLKFPYSWWSENTTGFSFLWS-DDDREKFIKENKR-RGWDYLCDVFGFYICDNCP 348

Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKG 305
            T LGWI G +AR ME  S ++IK   M     FLG  YTIP P  V  S WG+N HF G
Sbjct: 349 DTLLGWIVGPAARNMERKSLDEIKIGLMYLLNKFLGDTYTIPFPDLVTRSQWGSNSHFYG 408

Query: 306 SYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADR 365
           SYS +++ TDK   +  +L  PL N  GK +LLF GEA++   + TV+GA+ETGWREADR
Sbjct: 409 SYSFHSMNTDKEGKANSELAKPLINSDGKNILLFGGEATHSSYFSTVHGAIETGWREADR 468

Query: 366 ILK 368
           IL+
Sbjct: 469 ILE 471

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795354|gb|EFZ18159.1| hypothetical protein SINV_80022 [Solenopsis invicta]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 185/369 (50%), Gaps = 58/369 (15%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMP-GQT 59
           + ++ K +NS+  SDSWF+ SAKR   +   EG     WK  GY  +  LLL+++P  + 
Sbjct: 20  LSWIEKMENSIQCSDSWFDVSAKRLTEYWECEGDSTLDWKTRGYKTIFDLLLRRIPNAEE 79

Query: 60  PIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLIT-FVPP 118
            + + +K+   K VT IN+     V V   DG +YSA  V+ T SLGV K    T FVPP
Sbjct: 80  CLPIMEKIEFGKVVTTINYSSGENVTVITRDGCEYSALHVIFTGSLGVLKEKHSTMFVPP 139

Query: 119 LPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAP 178
           L  +K+ +IE                                                  
Sbjct: 140 LSQKKQRVIEG------------------------------------------------- 150

Query: 179 WISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF 238
              L +GT +KVF+ FP +WWP+D   ++F W+  D+K  L       +   W+ D++ F
Sbjct: 151 ---LNIGTANKVFLEFPHRWWPEDKASFDFIWSEKDKKEFL---QNYGENREWLCDVFSF 204

Query: 239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWG 298
           +     P     WI+G +AR METLSD  +        +     +Y + +P R+  S W 
Sbjct: 205 FTVAHQPNLLCAWIAGKNARHMETLSDVDVFNGLYLLLKKSFEKHYNVVKPIRMLRSKWY 264

Query: 299 TNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET 358
           TN+HF+GSYS  + T++ M+    DL  P+ +G  K V+LFAGEA+++H Y TV+GAVET
Sbjct: 265 TNEHFRGSYSFQSTTSELMDVRPKDLAEPVMSG-NKPVILFAGEATHDHFYSTVHGAVET 323

Query: 359 GWREADRIL 367
           G+READR++
Sbjct: 324 GFREADRLI 332

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373967|gb|EFR21628.1| hypothetical protein AND_16683 [Anopheles darlingi]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 190/374 (50%), Gaps = 67/374 (17%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMP---G 57
           ++F  K +NS++ASDSWF+TS   Y  +   +G     W+  GY  VL++L+K+ P    
Sbjct: 156 LEFFHKFENSIEASDSWFDTSGPGYLHYWECDGDLLLNWRDKGYRTVLEILMKRHPLPIA 215

Query: 58  QTPIDLGKKLLLNKEVTKINWEDANGVLVT--CADGSQYSADKVLITVSLGVFKSDLIT- 114
              I+L +    NK V  INW      LV+  C D S Y AD V+ TVSLGV K    T 
Sbjct: 216 SEAINLEEYTHFNKTVANINWTAGPDSLVSIRCTDNSVYDADHVICTVSLGVLKERYQTL 275

Query: 115 FVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVV 174
           F P LPP K+N I+                                              
Sbjct: 276 FTPDLPPIKRNAIQG--------------------------------------------- 290

Query: 175 DGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDD-EKNPLFKDTAVVDGAPWIV 233
                  L +GTV+K+F+ F + +W    +G +  W   D E+    +D+       W+ 
Sbjct: 291 -------LTIGTVNKLFLEFEKPFWSPGWQGLSLIWDAADLEEIRKHRDS-------WME 336

Query: 234 DLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVF 293
           D++GFY+    P    GWISG +AR ME  SDE+++   +   R F+  N T+PEP R  
Sbjct: 337 DVFGFYIVDYQPNVLCGWISGKNARRMERASDEEVRNACLFLLRKFM-KNCTVPEPVRFQ 395

Query: 294 HSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVN 353
            ++W +N +F+GSY+  +LTTD +N S   L  PL+N  G  V+ FAGEA+++H Y TV+
Sbjct: 396 RTTWYSNANFRGSYTFRSLTTDLLNTSASHLAIPLTNSCGMPVVQFAGEATHDHYYSTVH 455

Query: 354 GAVETGWREADRIL 367
           GAVETGWREA+R++
Sbjct: 456 GAVETGWREANRLI 469

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019665|gb|EGI60139.1| Peroxisomal N(1)-acetyl-spermine/spermidine oxidase [Acromyrmex echinatior]

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 182/369 (49%), Gaps = 58/369 (15%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPG-QT 59
           + ++ K +NS+  SD+WF+ SAKR   +   EG     WK  GY  +  LLL+++P  + 
Sbjct: 159 LSWIEKMENSIQCSDTWFDISAKRLTEYRECEGDLVLDWKNYGYKTIFDLLLQKIPNPEE 218

Query: 60  PIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLIT-FVPP 118
            + + +K+   K V  IN+      ++T  DG +Y A  V+ T SLGV K    + FVPP
Sbjct: 219 RLPVMEKIEFEKVVATINYSSGENAMITTKDGCEYFASHVIFTGSLGVLKEKHSSMFVPP 278

Query: 119 LPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAP 178
           L  +K+  IE                                                  
Sbjct: 279 LSQKKQRAIEG------------------------------------------------- 289

Query: 179 WISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF 238
              L +GT +K+F+ FP +WWP+D   +NF W   D+K  L         + W+ D++ F
Sbjct: 290 ---LNIGTANKIFLEFPHRWWPEDKVSFNFIWPEKDKKEFLQTHG---QNSEWLCDVFSF 343

Query: 239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWG 298
           ++    P     WI+G +AR METLSD  +        +   G    I +P R+  S W 
Sbjct: 344 FIVAHQPNLLCAWITGKNARHMETLSDTDVFDGLYLLLKKSFGKRCNIVKPIRILRSKWY 403

Query: 299 TNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET 358
           TN+HF+GSYS  ++ ++ MN +  DL  P+  G  K V+LFAGEA+++H Y TV+GAVET
Sbjct: 404 TNEHFRGSYSFLSMLSEHMNVTPRDLAEPIMTGI-KPVILFAGEATHDHYYSTVHGAVET 462

Query: 359 GWREADRIL 367
           G+READR++
Sbjct: 463 GFREADRLI 471

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019664|gb|EGI60138.1| Peroxisomal N(1)-acetyl-spermine/spermidine oxidase [Acromyrmex echinatior]

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 184/369 (49%), Gaps = 58/369 (15%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMP-GQT 59
           +  + K QNS D SD+WF+ S K +  +   EG     WK  GY  +  +LL+++P  + 
Sbjct: 247 LSLIEKMQNSADCSDTWFDVSVKLFIDYWECEGDLTLNWKGRGYKTIFDVLLQKIPNSEE 306

Query: 60  PIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLIT-FVPP 118
            + + +K+   K V  IN+     V VT  DG +Y A  V+ T SLGV K    + FVPP
Sbjct: 307 RLPVMEKIEFEKVVATINYSSGENVTVTTRDGCEYFASHVIFTGSLGVLKEKHSSMFVPP 366

Query: 119 LPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAP 178
           LP +K+  IE                                                  
Sbjct: 367 LPQKKQRAIEG------------------------------------------------- 377

Query: 179 WISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF 238
              L +GT +K+F+ FP +WWP+D   +NF W+  D+K  L         + W+ D++ F
Sbjct: 378 ---LNIGTANKIFLEFPHRWWPEDKTTFNFIWSEKDKKEFLQTHG---QNSEWLCDVFMF 431

Query: 239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWG 298
                 P     WI+G +AR++ETLSD  +        +    ++  + +P+R+  S W 
Sbjct: 432 VTVAYQPNLLCAWITGKNARYIETLSDTDVFDGLYLLLKEAFESHDNVTKPTRILRSKWY 491

Query: 299 TNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET 358
           TN+HF+GSYS +++ +++MN +  DL  P+  G  K V+LFAGEA+++H Y TV+G VET
Sbjct: 492 TNEHFRGSYSFHSMLSEQMNVTSRDLAEPIMTGN-KPVILFAGEATHDHYYSTVHGGVET 550

Query: 359 GWREADRIL 367
           G+READR++
Sbjct: 551 GFREADRLI 559

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287397|ref|XP_309435.4| AGAP011207-PA [Anopheles gambiae str. PEST] gi|157019631|gb|EAA05268.4| AGAP011207-PA [Anopheles gambiae str. PEST]

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 187/374 (50%), Gaps = 67/374 (17%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP 60
           ++F  K +NS++ASDSWF+TS   Y  +   +G     W+  GY  VL++L+K+ P  T 
Sbjct: 168 LEFFHKFENSIEASDSWFDTSGPGYLHYWECDGDLLLNWRDKGYRTVLEILMKRHPLPTA 227

Query: 61  ---IDLGKKLLLNKEVTKINWEDANGVLVT--CADGSQYSADKVLITVSLGVFKSDLIT- 114
              I+L      NK V  INW      LV+  C D S Y AD V+ T+SLGV K    + 
Sbjct: 228 ADAINLEDYTHFNKTVANINWTAGPDSLVSVRCTDNSVYDADHVICTISLGVLKERYQSL 287

Query: 115 FVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVV 174
           F P LPP K+N I+                                              
Sbjct: 288 FTPDLPPIKRNAIQG--------------------------------------------- 302

Query: 175 DGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDD-EKNPLFKDTAVVDGAPWIV 233
                  L +GTV+K+F+ F + +W    +G +  W   D E+     D+       W+ 
Sbjct: 303 -------LTIGTVNKLFLEFEKPFWAAGWQGLSLIWNQADLEEVRKMPDS-------WME 348

Query: 234 DLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVF 293
           D++GFY+    P    GWISG +AR ME  SDE+++   M   R F+    T+PEP R  
Sbjct: 349 DVFGFYIVDYQPNVLCGWISGKNARRMERASDEEVRRACMFLLRKFMKG-CTVPEPVRFQ 407

Query: 294 HSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVN 353
            +SW +N +F+GSY+  ++TTD +N S   L  PL+N  G  V+ FAGEA+++H Y TV+
Sbjct: 408 RTSWYSNPNFRGSYTFRSMTTDLLNTSASHLAIPLTNSCGMPVVQFAGEATHDHYYSTVH 467

Query: 354 GAVETGWREADRIL 367
           GAVETGWREA R++
Sbjct: 468 GAVETGWREASRLI 481

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483413|ref|XP_001602253.2| PREDICTED: peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [Nasonia vitripennis]

 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 181/362 (50%), Gaps = 57/362 (15%)

Query: 8   QNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP-IDLGKK 66
            NS+D +D+W++ SA R   +   EG     WK  GY  V  LL K  P  T  + + +K
Sbjct: 165 HNSIDCTDTWYDLSAVRQQDYHECEGDLLLNWKTNGYSKVFDLLTKNYPDPTARLPVYEK 224

Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLIT-FVPPLPPQKKN 125
           +LLNKEV  I++     + V   DGS Y A  ++ T SLGV K      F P LPP K  
Sbjct: 225 ILLNKEVLHIDYSSGKEIKVVTTDGSIYKASNLIFTASLGVLKEQYSRLFTPSLPPLK-- 282

Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
                         +R         I+G+N                            +G
Sbjct: 283 --------------IR--------AIKGFN----------------------------IG 292

Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
             +K+F+ FP +WWP    G  F W+  ++K   FK+T   D   W+ D++ F+     P
Sbjct: 293 VANKIFLEFPYRWWPQHSGGLCFMWSQAEKKK--FKETHTKD-QHWLCDVFKFFTVDNQP 349

Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKG 305
               GW+ G +A+++E LSDE++  +     + FL   Y IP+P+ +  S W ++KH +G
Sbjct: 350 RLLNGWVVGPNAKYIEGLSDEKVLNDLYFLLQKFLSHIYDIPKPNAIIRSKWYSDKHTRG 409

Query: 306 SYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADR 365
           SYS  TL T+++N    DL  P+     K ++LFAGEA++EH Y TV+GA+ETG+READR
Sbjct: 410 SYSNQTLETERLNVRTKDLYDPIKGSTEKPLILFAGEATHEHYYSTVHGAIETGFREADR 469

Query: 366 IL 367
           I+
Sbjct: 470 II 471

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002494|gb|EEZ98941.1| hypothetical protein TcasGA2_TC004564 [Tribolium castaneum]

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 180/375 (48%), Gaps = 55/375 (14%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP 60
           +D+  K    L+++ SW E S      +   EG     W+K G+  VL +L+K++P  + 
Sbjct: 157 LDWFHKLWMCLESAKSWDELSPNGAYQYKECEGDLYLQWRKTGFKTVLDVLMKKIPDPSR 216

Query: 61  IDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLP 120
             L  ++LLNKEV KI W+  N V V C D S +  D ++IT S+G  K+   +F P LP
Sbjct: 217 T-LPVEILLNKEVNKIIWDCDNNVTVRCTDNSAFKCDHLIITASIGALKNLSESFEPQLP 275

Query: 121 PQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWI 180
           P                                               K +A+   A   
Sbjct: 276 P----------------------------------------------IKQSAIDLTA--- 286

Query: 181 SLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEK--NPLFKDTAVVDGAPWIVDLYGF 238
              +G V K+ ++FP+KWWPD  +G +  W   D +  +  F    + DG  W+  +YGF
Sbjct: 287 ---IGDVKKILLKFPKKWWPDSFKGLSLVWRDSDREKLSTEFPQGPIKDGKSWLEYIYGF 343

Query: 239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWG 298
           Y+    P   LGW+ G     +E L D+ +    M   + F+G  Y I EP ++  S W 
Sbjct: 344 YVIDSHPDVLLGWVVGPMVGEVELLPDDVVVAGCMFLLKKFVGDKYEISEPQKILRSKWR 403

Query: 299 TNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET 358
            N HF G YS   L  +K N +  DL +P++N   KQVLLFAGEA++   Y TV+GA+ET
Sbjct: 404 NNPHFNGCYSYRCLEAEKKNVTWEDLASPVANSSSKQVLLFAGEATHPIYYSTVHGAIET 463

Query: 359 GWREADRILKSDPAP 373
           G+READRI+    +P
Sbjct: 464 GYREADRIVNLYKSP 478

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214267|gb|EFN89363.1| Peroxisomal N(1)-acetyl-spermine/spermidine oxidase [Harpegnathos saltator]

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 182/366 (49%), Gaps = 58/366 (15%)

Query: 4   LGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMP-GQTPID 62
           + K + S++ SDS  E SAKR   +   EG     WK+ GY  +  LL+K++P  +  + 
Sbjct: 160 IEKMECSIECSDSLSEVSAKRLTDYWECEGDSVQNWKERGYKTLFDLLMKKIPNAENGLP 219

Query: 63  LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLIT-FVPPLPP 121
           + +++ L K VT I++     V VT +DG +Y A  V+ T SLGV K    T FVP LP 
Sbjct: 220 VTERIELKKVVTTIDYNSGKDVTVTTSDGCKYIASHVIFTASLGVLKKKHSTLFVPSLPS 279

Query: 122 QKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWIS 181
           + +  I  L +GTV+K+F+ FP KWW +D    N     ++KK                 
Sbjct: 280 KIRRAIRGLCIGTVNKIFMEFPCKWWSEDTVSINLVSLEENKK----------------- 322

Query: 182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
                       F QK+  +                             W+ D++ F++ 
Sbjct: 323 -----------LFVQKYGEE---------------------------YQWLCDVFSFFVV 344

Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
              P     WI G  AR METLSD  I     +  +  +G +Y +  P+R+  S W T++
Sbjct: 345 DYQPRLLCAWIIGKYARQMETLSDTDISDGLYRLLQDSMGKHYHVVRPTRILRSKWFTDE 404

Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
           HF+GSY+  ++ T+ +N    DL  P+    GK V+LFAGEA+++H Y TV+GAVETG+R
Sbjct: 405 HFQGSYTFQSMNTENLNVKPSDLAEPVVV-NGKPVILFAGEATHDHYYSTVHGAVETGFR 463

Query: 362 EADRIL 367
           EADR+L
Sbjct: 464 EADRLL 469

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170065849|ref|XP_001868046.1| spermine oxidase [Culex quinquefasciatus] gi|167862588|gb|EDS25971.1| spermine oxidase [Culex quinquefasciatus]

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 181/373 (48%), Gaps = 65/373 (17%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMP---G 57
           ++F  K +NS+++SDSWF+TS   Y  +   +G     W+  GY  + ++L+++ P    
Sbjct: 155 LEFFHKFENSIESSDSWFDTSGPGYLHYWECDGNPLLNWRDKGYRTIFEILMQRYPLPIA 214

Query: 58  QTPIDLGKKLLLNKEVTKINWEDA--NGVLVTCADGSQYSADKVLITVSLGVFKSDLIT- 114
           +  I+L +    NK V  I W       V V C D + Y AD V+ TVS GV K    T 
Sbjct: 215 KDAINLEEYTHFNKSVANICWNSGPDQTVSVRCTDNTVYDADHVISTVSHGVLKERYGTL 274

Query: 115 FVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVV 174
           F P LPP K N I+                                              
Sbjct: 275 FTPKLPPIKVNAIQG--------------------------------------------- 289

Query: 175 DGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVD 234
                  L +GTV+K+F+ F + +WP D +G +  WT  D       +        W+ D
Sbjct: 290 -------LSIGTVNKLFLEFDKPFWPKDWQGLSLLWTKSD------LEAVRSSKNSWMED 336

Query: 235 LYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFH 294
           ++GFY     P    GWISG + R ME  S+++++   M   R F+  N TIPEP     
Sbjct: 337 VFGFYTVDYQPNVLCGWISGKNGRKMERTSEDEVRKVCMHLLRKFI-KNTTIPEPKSFHR 395

Query: 295 SSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNG 354
           ++W +N +F+GSYS  ++TTD +N S   L  PL+N  G  V+ FAGEA++ H Y TV+G
Sbjct: 396 TTWYSNPNFRGSYSFRSMTTDLLNTSAEHLALPLTNSCGIPVVQFAGEATHSHYYSTVHG 455

Query: 355 AVETGWREADRIL 367
           A+ETGWREADR++
Sbjct: 456 AIETGWREADRLV 468

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
FB|FBgn0033584	509	CG7737 [Drosophila melanogaste	0.420	0.308	0.381	7.4e-31
FB|FBgn0036749	486	CG7460 [Drosophila melanogaste	0.474	0.364	0.389	1.8e-30
FB|FBgn0036750	479	CG6034 [Drosophila melanogaste	0.474	0.369	0.362	2.3e-29
FB|FBgn0035943	480	CG5653 [Drosophila melanogaste	0.479	0.372	0.379	7.2e-29
ZFIN|ZDB-GENE-030131-5768	495	zgc:66484 "zgc:66484" [Danio r	0.490	0.369	0.316	6.5e-23
UNIPROTKB|F1MG47	512	PAOX "Peroxisomal N(1)-acetyl-	0.482	0.351	0.343	2.7e-20
UNIPROTKB|Q865R1	512	PAOX "Peroxisomal N(1)-acetyl-	0.482	0.351	0.343	2.7e-20
MGI|MGI:1916983	504	Paox "polyamine oxidase (exo-N	0.477	0.353	0.340	7e-19
UNIPROTKB|Q9NWM0	555	SMOX "Spermine oxidase" [Homo	0.479	0.322	0.324	5e-18
UNIPROTKB|E2R8S7	555	SMOX "Uncharacterized protein"	0.479	0.322	0.324	5e-18

FB|FBgn0033584 CG7737 [Drosophila melanogaster (taxid:7227)]

 Score = 267 (99.0 bits), Expect = 7.4e-31, Sum P(2) = 7.4e-31
 Identities = 61/160 (38%), Positives = 90/160 (56%)

Query:     6 KAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPID-LG 64
             K +NS++ASD+  + S + Y  +   EG     WK  GY  +L+LL++          L 
Sbjct:   170 KFENSVEASDTLEQVSGRGYLDYWECEGDILLNWKDKGYVELLRLLMRSRELNVEHGVLE 229

Query:    65 KKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLGVFKSD-LITFVPPLPPQ 122
             ++LLL   V KINW   +G V +  ++G    AD V++TVSLGV K   L  F P LP +
Sbjct:   230 QRLLLGTRVVKINWNRNDGRVELQMSNGETCIADHVVVTVSLGVLKDQHLRLFEPQLPVE 289

Query:   123 KKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDD 162
             K+  I+ L  GTV+K+FV FP+ +WP+D  G+   W  +D
Sbjct:   290 KQRAIDGLAFGTVNKIFVEFPEAFWPEDWTGFTMLWRDED 329

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0036749 CG7460 [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 72/185 (38%), Positives = 105/185 (56%)

Query:   182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
             L LGTVDK F+ F     P D  G+N  W  +D +    + + +     W+  ++GFY  
Sbjct:   299 LKLGTVDKFFLEFENPPLPGDWPGFNCLWLKEDLEE--LRASELF----WLESVFGFYPV 352

Query:   242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
             +  P    GWI G  AR METL++E++    +  FR FL   +    P R+  + W  N 
Sbjct:   353 SRQPRILQGWIIGPHARHMETLTEERVLEGLLWLFRKFLP--FETAHPVRMLRTQWHANP 410

Query:   302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
             +F+GSY+  +  TD +     DLEAPL +  G+  L FAGE++++H Y TV+GAVETGWR
Sbjct:   411 NFRGSYTFRSTYTDALRTGAWDLEAPLQDVCGRPRLQFAGESTHKHFYSTVHGAVETGWR 470

Query:   362 EADRI 366
             EA+R+
Sbjct:   471 EAERL 475

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

FB|FBgn0036750 CG6034 [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 67/185 (36%), Positives = 107/185 (57%)

Query:   182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
             L LGTV+K ++ F ++  P+++R   F W  +D K    +         W+  +  F+  
Sbjct:   293 LKLGTVNKFYLEFEEQPVPENIREMAFLWLEEDLKE--LRSGKYF----WLESVCYFHRV 346

Query:   242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
                P    GWI GA +R++ET+S+EQ+    M  FR FL   +++P P     S W +N 
Sbjct:   347 DCQPRLLQGWIIGAHSRYVETISEEQVLEGIMWMFRKFL--KFSVPYPKNFLRSQWQSNP 404

Query:   302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
             +F+GSYS Y+   D++   R DL +PL +  G+  + FAGEAS+ + + TV+GA+E+GWR
Sbjct:   405 NFRGSYSYYSTYADELRTGRTDLASPLVDVTGRPRIQFAGEASSRNHFSTVHGAIESGWR 464

Query:   362 EADRI 366
             EA+R+
Sbjct:   465 EAERL 469

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

FB|FBgn0035943 CG5653 [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 7.2e-29, P = 7.2e-29
 Identities = 71/187 (37%), Positives = 106/187 (56%)

Query:   181 SLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYL 240
             SL LGTV+K+++ + ++  PD   G+  FW  +D      + T       W+  + G ++
Sbjct:   292 SLTLGTVNKLYLEYEKQPLPDGWVGFFCFWLEEDLVE--LRKTEYF----WVEGITGVHM 345

Query:   241 TTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTN 300
              T  P   + W++G   R METLSDE++       FR FL   + IP P R   SSW +N
Sbjct:   346 ITCQPRMLMAWVNGPHGRHMETLSDEKVLEGLYWLFRKFL--TFEIPPPKRFVRSSWFSN 403

Query:   301 KHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGW 360
              +F+GS+S   +  D+ N    DLE+P+    G   LLFAGEAS+ + + TV+GAVE G+
Sbjct:   404 PNFRGSWSYRGVMADERNTGPWDLESPVLGEDGHLGLLFAGEASSRNHFSTVHGAVEAGY 463

Query:   361 READRIL 367
             READR++
Sbjct:   464 READRLI 470

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-030131-5768 zgc:66484 "zgc:66484" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
 Identities = 61/193 (31%), Positives = 99/193 (51%)

Query:   182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG--APWIVDLYGFY 239
             L  G V+K+F+ F + +WPDD  G    W    E   +++D +  +     W   + GF 
Sbjct:   301 LGFGIVNKIFLFFEKSFWPDDCAGVQLVWKEGPEDKDVYEDLSEGEDWKQTWFKKITGFD 360

Query:   240 LTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
                  P    GWI+G  A +ME+L D +I+   ++  R   G  + +PE S+   S WG+
Sbjct:   361 TVARHPTALCGWITGREALYMESLQDREIQEVCVRLLRSSTG--WPVPEVSKTLISRWGS 418

Query:   300 NKHFKGSYSIYTLTTDKMNASRHDLEAPL-----SNGQGKQVLLFAGEASNEHQYGTVNG 354
             +   +GSY+      D + A +  L +PL     S G+    +LFAGEA++ + Y T +G
Sbjct:   419 DPQVRGSYTFVPDGVDGVEAHKA-LASPLPPKHRSRGRKNLQVLFAGEATHVNFYTTTHG 477

Query:   355 AVETGWREADRIL 367
             A  +G REA+R++
Sbjct:   478 AYLSGQREAERLI 490

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1MG47 PAOX "Peroxisomal N(1)-acetyl-spermine/spermidine oxidase" [Bos taurus (taxid:9913)]

 Score = 259 (96.2 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 66/192 (34%), Positives = 104/192 (54%)

Query:   185 GTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTED 244
             GT +K+F+ F + +W  D +     W   ++ +PL +DTA      W   L GF++    
Sbjct:   319 GTNNKIFLEFEEPFWEPDCQHIQVVW---EDMSPL-EDTAPELQDAWFKKLIGFWVLPPF 374

Query:   245 PLTFL--GWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKH 302
               + +  G+I+G  + FMETLSDE +     +  R   G N  +P P  +  S W +  +
Sbjct:   375 QASHVLCGFIAGLESEFMETLSDEDVLRSLTQVLRRVTG-NPQLPAPRSMLRSCWHSAPY 433

Query:   303 FKGSYSIYTLTTDKMNASRHDLEAPL-SNGQGKQV-LLFAGEASNEHQYGTVNGAVETGW 360
              +GSYS   + +   +  R  L  PL S+G+G Q+ +LFAGEA++   Y T +GA+ +GW
Sbjct:   434 TRGSYSYVAVGSSGDDMDR--LAQPLPSDGKGAQLQVLFAGEATHRTFYSTTHGALLSGW 491

Query:   361 READRILKS-DP 371
             READR++   DP
Sbjct:   492 READRLMTLWDP 503

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q865R1 PAOX "Peroxisomal N(1)-acetyl-spermine/spermidine oxidase" [Bos taurus (taxid:9913)]

 Score = 259 (96.2 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 66/192 (34%), Positives = 104/192 (54%)

Query:   185 GTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTED 244
             GT +K+F+ F + +W  D +     W   ++ +PL +DTA      W   L GF++    
Sbjct:   319 GTNNKIFLEFEEPFWEPDCQHIQVVW---EDMSPL-EDTAPELQDAWFKKLIGFWVLPPF 374

Query:   245 PLTFL--GWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKH 302
               + +  G+I+G  + FMETLSDE +     +  R   G N  +P P  +  S W +  +
Sbjct:   375 QASHVLCGFIAGLESEFMETLSDEDVLRSLTQVLRRVTG-NPQLPAPRSMLRSCWHSAPY 433

Query:   303 FKGSYSIYTLTTDKMNASRHDLEAPL-SNGQGKQV-LLFAGEASNEHQYGTVNGAVETGW 360
              +GSYS   + +   +  R  L  PL S+G+G Q+ +LFAGEA++   Y T +GA+ +GW
Sbjct:   434 TRGSYSYVAVGSSGDDMDR--LAQPLPSDGKGAQLQVLFAGEATHRTFYSTTHGALLSGW 491

Query:   361 READRILKS-DP 371
             READR++   DP
Sbjct:   492 READRLMTLWDP 503

GO:0008215 "spermine metabolic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0052904 "N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity" evidence=IEA

GO:0052903 "N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity" evidence=IEA

GO:0052902 "spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity" evidence=IEA

GO:0052901 "spermine:oxygen oxidoreductase (spermidine-forming) activity" evidence=IEA

GO:0052899 "N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1916983 Paox "polyamine oxidase (exo-N4-amino)" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 7.0e-19, P = 7.0e-19
 Identities = 65/191 (34%), Positives = 101/191 (52%)

Query:   182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYL- 240
             L  GT +K+F+ F + +W  D +     W   ++ +PL +DTA+     W   L GF + 
Sbjct:   308 LGFGTNNKIFLEFEEPFWEPDCQFIQVVW---EDTSPL-QDTALSLQDTWFKKLIGFLVQ 363

Query:   241 -TTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGT 299
              + E      G+I+G  + FMETLSDE++     +  R   G N  +P    V  S W +
Sbjct:   364 PSFESSHVLCGFIAGLESEFMETLSDEEVLLSLTQVLRRVTG-NPQLPAAKSVRRSQWHS 422

Query:   300 NKHFKGSYSIYTL--TTDKMNASRHDLEAPLSNGQGKQV-LLFAGEASNEHQYGTVNGAV 356
               + +GSYS   +  T D ++     L  P  +G G Q+ +LFAGEA++   Y T +GA+
Sbjct:   423 APYTRGSYSYVAVGSTGDDLDLMAQPL--P-EDGTGTQLQVLFAGEATHRTFYSTTHGAL 479

Query:   357 ETGWREADRIL 367
              +GWREADR++
Sbjct:   480 LSGWREADRLV 490

GO:0005102 "receptor binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0006598 "polyamine catabolic process" evidence=ISO;IDA

GO:0009446 "putrescine biosynthetic process" evidence=ISO

GO:0009447 "putrescine catabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046203 "spermidine catabolic process" evidence=ISO

GO:0046208 "spermine catabolic process" evidence=ISO

GO:0046592 "polyamine oxidase activity" evidence=ISO;IDA

GO:0052899 "N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity" evidence=IEA

GO:0052901 "spermine:oxygen oxidoreductase (spermidine-forming) activity" evidence=IEA

GO:0052902 "spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity" evidence=IEA

GO:0052903 "N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity" evidence=IEA

GO:0052904 "N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

GO:1901307 "positive regulation of spermidine biosynthetic process" evidence=ISO

UNIPROTKB|Q9NWM0 SMOX "Spermine oxidase" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 63/194 (32%), Positives = 92/194 (47%)

Query:   182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF--- 238
             L +GT DK+F+ F + +W  +     F W  + E + L     +     W   + GF   
Sbjct:   360 LGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESHTLTYPPEL-----WYRKICGFDVL 414

Query:   239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWG 298
             Y          GWI G  A  ME   DE +     +  R F G N  IP+P R+  S+WG
Sbjct:   415 YPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTG-NPNIPKPRRILRSAWG 473

Query:   299 TNKHFKGSYSIYTLTTDKMNASRHDLEAPL----SNGQGKQVLLFAGEASNEHQYGTVNG 354
             +N +F+GSYS YT       A    L  PL    S+      +LF+GEA++   Y T +G
Sbjct:   474 SNPYFRGSYS-YT-QVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHG 531

Query:   355 AVETGWREADRILK 368
             A+ +G REA R+++
Sbjct:   532 ALLSGQREAARLIE 545

GO:0052894 "norspermine:oxygen oxidoreductase activity" evidence=IEA

GO:0052895 "N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity" evidence=IEA

GO:0052901 "spermine:oxygen oxidoreductase (spermidine-forming) activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0046208 "spermine catabolic process" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006595 "polyamine metabolic process" evidence=TAS

GO:0006596 "polyamine biosynthetic process" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E2R8S7 SMOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 63/194 (32%), Positives = 91/194 (46%)

Query:   182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF--- 238
             L +GT DK+F+ F + +W  +     F W  + E   L     +     W   + GF   
Sbjct:   360 LGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESRTLTYPPEL-----WYRKICGFDVL 414

Query:   239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWG 298
             Y          GWI G  A  ME   DE +     +  R F G N  IP+P R+  S+WG
Sbjct:   415 YPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTG-NPNIPKPRRILRSAWG 473

Query:   299 TNKHFKGSYSIYTLTTDKMNASRHDLEAPL----SNGQGKQVLLFAGEASNEHQYGTVNG 354
             +N +F+GSYS YT       A    L  PL    S+      +LF+GEA++   Y T +G
Sbjct:   474 SNPYFRGSYS-YT-QVGSSGADVEKLAKPLPYTESSKMAPMQVLFSGEATHRKYYSTTHG 531

Query:   355 AVETGWREADRILK 368
             A+ +G REA R+++
Sbjct:   532 ALLSGQREAARLIE 545

GO:0046592 "polyamine oxidase activity" evidence=IEA

GO:0046208 "spermine catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	373
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	7e-37
PLN02676	487	PLN02676, PLN02676, polyamine oxidase	5e-32
PLN02568	539	PLN02568, PLN02568, polyamine oxidase	9e-30
PLN02976	1713	PLN02976, PLN02976, amine oxidase	7e-20
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	8e-17
PLN03000	881	PLN03000, PLN03000, amine oxidase	4e-15
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	2e-14
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	4e-13
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	8e-09

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score =  138 bits (348), Expect = 7e-37
 Identities = 83/306 (27%), Positives = 117/306 (38%), Gaps = 77/306 (25%)

Query: 62  DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPP 121
            LG ++ LN  V  I     +GV VT  DG    AD V++TV LGV K   I F+PPLP 
Sbjct: 216 LLGGRVRLNTRVRSITKSG-DGVTVTTVDGRTIEADAVIVTVPLGVLKR--ILFLPPLPA 272

Query: 122 QKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWIS 181
            K                    +                                     
Sbjct: 273 AK----------------QEAIRNLGF--------------------------------- 283

Query: 182 LFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
              G+V KVF+ F   +WP++   +    T    +     DT+   G             
Sbjct: 284 ---GSVSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSG------------- 327

Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
                  L ++ G +AR +E LSDE++    ++  R  LG    +P+P     S W T+ 
Sbjct: 328 -SGRGVLLSYVLGDAARELEDLSDEELLEAVLRDLRKLLGPED-VPDPVNFLVSDWHTDP 385

Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
           + +GSYS   +  D     R  L  P+  G     L FAGE ++    GTV GAVE+G R
Sbjct: 386 YARGSYSYPPVGDDS--RYRPALRTPVGPG-----LFFAGEHTSGGYPGTVEGAVESGLR 438

Query: 362 EADRIL 367
            A R+L
Sbjct: 439 AARRVL 444

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase

 Score =  125 bits (316), Expect = 5e-32
 Identities = 86/303 (28%), Positives = 127/303 (41%), Gaps = 79/303 (26%)

Query: 66  KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
           +L LNK V +I++   NGV V   DGS Y A  V+++VSLGV +SDLI F PPLP  K  
Sbjct: 246 RLKLNKVVREISYSK-NGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIE 304

Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
            I    +    K+F++FP K+WP    G  FF    ++                      
Sbjct: 305 AIYQFDMAVYTKIFLKFPYKFWPSG-PGTEFFLYAHER---------------------- 341

Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
                             RGY  FW H + + P         G+  +       +T E+ 
Sbjct: 342 ------------------RGYYPFWQHLENEYP---------GSNVLF----VTVTDEE- 369

Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKG 305
                      +R +E   D + K E M+  R   G N  IPE + +    W +N+ FKG
Sbjct: 370 -----------SRRIEQQPDSETKAEIMEVLRKMFGPN--IPEATDILVPRWWSNRFFKG 416

Query: 306 SYSIYTLTTDKMNASRHD-LEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREAD 364
           SYS + +    ++    D + AP+        + F GE ++E   G V+GA   G   A+
Sbjct: 417 SYSNWPI---GVSRYEFDQIRAPVGR------VYFTGEHTSEKYNGYVHGAYLAGIDTAN 467

Query: 365 RIL 367
            +L
Sbjct: 468 DLL 470

Length = 487

>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase

 Score =  119 bits (300), Expect = 9e-30
 Identities = 100/363 (27%), Positives = 144/363 (39%), Gaps = 104/363 (28%)

Query: 42  GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLI 101
            GY +V++ L   +P  T I LG+K      VT+I W+D   V +  ADGS  +AD V++
Sbjct: 239 KGYLSVIEALASVLPPGT-IQLGRK------VTRIEWQD-EPVKLHFADGSTMTADHVIV 290

Query: 102 TVSLGVFKSDLIT----FVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFF 157
           TVSLGV K+ +      F PPLP  K + I  L  G V+K+FV    +            
Sbjct: 291 TVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPR------------ 338

Query: 158 WTHDDKKNPLFKDTAVVDGAPWISL-FLGTV-DKVFVRFPQKWWPDDVRGYNFFWTHDDE 215
              D            V   P++ + F  +  +    + P  WW   +R      T    
Sbjct: 339 --PDGS-------PEDVAKFPFLQMAFHRSDSEARHDKIP--WW---MRR-----TA--S 377

Query: 216 KNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKA 275
             P+ K+++V+                      L W +G  A  +E LSDE+I       
Sbjct: 378 ICPIHKNSSVL----------------------LSWFAGKEALELEKLSDEEIIRGVQTT 415

Query: 276 FRFFLGANYTIPEPS--------------------RVFHSSWGTNKHFKGSYSIYTLTTD 315
              FL                              +V  S WGT+  F GSYS Y     
Sbjct: 416 LSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS-YV---- 470

Query: 316 KMNASRHDLE---APLSNGQGKQV-------LLFAGEASNEHQYGTVNGAVETGWREADR 365
            + +S  DL+    PL               LLFAGEA++   Y T +GA  +G REA+R
Sbjct: 471 AVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANR 530

Query: 366 ILK 368
           +L+
Sbjct: 531 LLQ 533

Length = 539

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 91.5 bits (227), Expect = 7e-20
 Identities = 94/340 (27%), Positives = 140/340 (41%), Gaps = 101/340 (29%)

Query: 41   KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINW--EDANG-------VLVTCADG 91
            KGGY NV++ L +          G  + LN  VT +++  +DA         V V+ ++G
Sbjct: 932  KGGYSNVVESLAE----------GLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNG 981

Query: 92   SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDI 151
            S++  D VLITV LG  K++ I F PPLP  K + I+ L  G ++KV + FP+ +W DD 
Sbjct: 982  SEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFW-DDS 1040

Query: 152  RGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNF-FW 210
              Y                            F  T ++            D+RG  F FW
Sbjct: 1041 VDY----------------------------FGATAEET-----------DLRGQCFMFW 1061

Query: 211  THDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKT 270
                      K T    GAP ++ L                + G +A   +++S      
Sbjct: 1062 N--------VKKTV---GAPVLIAL----------------VVGKAAIDGQSMSSSDHVN 1094

Query: 271  ESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHD---LEAP 327
             ++   R   G    +P+P     + WG +    G+YS Y      + AS  D   L  P
Sbjct: 1095 HALMVLRKLFG-EALVPDPVASVVTDWGRDPFSYGAYS-YV----AIGASGEDYDILGRP 1148

Query: 328  LSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL 367
            + N      L FAGEA+ +    TV GA+ +G REA RI+
Sbjct: 1149 VEN-----CLFFAGEATCKEHPDTVGGAMMSGLREAVRII 1183

Length = 1713

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 81.6 bits (201), Expect = 8e-17
 Identities = 79/289 (27%), Positives = 121/289 (41%), Gaps = 74/289 (25%)

Query: 81  ANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFV 140
            +GV+V  A G ++  D VL TV LGV K   I F P LP +KK+ I+ L  G ++KV +
Sbjct: 462 VDGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVAL 520

Query: 141 RFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWP 200
            FP  +W  +I          D    L +D +                            
Sbjct: 521 LFPYNFWGGEI----------DTFGHLTEDPS---------------------------- 542

Query: 201 DDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFM 260
             +RG  FF         LF   + V G P ++ L                ++G +A   
Sbjct: 543 --MRG-EFF---------LFYSYSSVSGGPLLIAL----------------VAGDAAVKF 574

Query: 261 ETLSDEQIKTESMKAFR-FFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNA 319
           ETLS  +     ++  R  F      +P+P +   + WG +    GSYS   + +   + 
Sbjct: 575 ETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGS---SG 631

Query: 320 SRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368
             +D+ A  S G G+  + FAGEA+N+    T++GA  +G REA  IL+
Sbjct: 632 DDYDILAE-SVGDGR--VFFAGEATNKQYPATMHGAFLSGMREAANILR 677

Length = 808

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 76.6 bits (188), Expect = 4e-15
 Identities = 89/338 (26%), Positives = 129/338 (38%), Gaps = 85/338 (25%)

Query: 36  DTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYS 95
           D  +  GG G +++ L + +P          +L  K V  I +  +NGV V  A    Y 
Sbjct: 372 DHCFLPGGNGRLVQALAENVP----------ILYEKTVQTIRY-GSNGVKVI-AGNQVYE 419

Query: 96  ADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYN 155
            D VL TV LGV K+  I FVP LP +K + I+ L  G ++KV + FP  +W  D+  + 
Sbjct: 420 GDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFG 479

Query: 156 FFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDE 215
              T D                                          RG  FF      
Sbjct: 480 HL-TEDPNY---------------------------------------RG-EFF------ 492

Query: 216 KNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKA 275
              LF   A V G P ++ L                ++G +A   ET+      T  +  
Sbjct: 493 ---LFYSYAPVAGGPLLIAL----------------VAGEAAHKFETMPPTDAVTRVLHI 533

Query: 276 FR-FFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGK 334
            R  +      +P+P +   + WG +    GSYS        + AS  D +  L+   G 
Sbjct: 534 LRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYS-----NVAVGASGDDYDI-LAESVGD 587

Query: 335 QVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA 372
             L FAGEA+      T++GA  TG REA  + +S  A
Sbjct: 588 GRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625

Length = 881

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 69  LNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIE 128
           LN  VTKI     NGV VT  DG+ + AD  +I V LGV K+++I F P LP  K+  I 
Sbjct: 215 LNHRVTKIV-RRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAIS 273

Query: 129 SLFLGTVDKVFVRFPQKWWPD 149
            L +G  +K+ + F   +WP+
Sbjct: 274 DLGVGIENKIALHFDSVFWPN 294

Length = 435

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 78/306 (25%), Positives = 118/306 (38%), Gaps = 78/306 (25%)

Query: 64  GKKLLLNKEVTKINWEDANGVLVTCADGSQ-YSADKVLITVSLGVFKSDLITFVPPLPPQ 122
           G  +   K V  I + + +GV V    GSQ + AD VL TV LGV K   I F P LP +
Sbjct: 366 GVPIFYGKTVDTIKYGN-DGVEVIA--GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRR 422

Query: 123 KKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISL 182
           K   I+ L  G ++KV + FP  +W +++  +       +K                   
Sbjct: 423 KLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNK------------------- 463

Query: 183 FLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTT 242
                                RG  FF         LF     V G P +V L       
Sbjct: 464 ---------------------RG-EFF---------LFYGYHTVSGGPALVAL------- 485

Query: 243 EDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNK 301
                    ++G +A+  E      +    +   R         +P+P +   + WG++ 
Sbjct: 486 ---------VAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDP 536

Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
              GSYS   + +   + S +D+ A   +G+    L FAGEA+      T++GA  +G R
Sbjct: 537 LSYGSYSHVRVQS---SGSDYDILAESVSGR----LFFAGEATTRQYPATMHGAFLSGLR 589

Query: 362 EADRIL 367
           EA RIL
Sbjct: 590 EASRIL 595

Length = 738

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 62  DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPP 121
            LG ++LLN+ V +I+ +D +GV VT  D  QY AD VL+T+ L +     I F P LP 
Sbjct: 218 QLGTRILLNEPVRRID-QDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPA 274

Query: 122 QKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
           + K   + +  G+  K+ V F + +W + 
Sbjct: 275 EYKQAAKGVPYGSATKIGVAFSRPFWEEA 303

Length = 450

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	373
KOG0685|consensus	498		100.0
PLN02676	487	polyamine oxidase	100.0
PLN02568	539	polyamine oxidase	100.0
PLN02976	1713	amine oxidase	100.0
PLN03000	881	amine oxidase	100.0
PLN02529	738	lysine-specific histone demethylase 1	100.0
PLN02268	435	probable polyamine oxidase	100.0
PLN02328	808	lysine-specific histone demethylase 1 homolog	100.0
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	100.0
KOG0029|consensus	501		99.97
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.96
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.93
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.92
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.92
PLN02576	496	protoporphyrinogen oxidase	99.92
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.9
PLN02612	567	phytoene desaturase	99.89
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.89
PRK07233	434	hypothetical protein; Provisional	99.88
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.77
PLN02487	569	zeta-carotene desaturase	99.77
PRK07208	479	hypothetical protein; Provisional	99.77
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.76
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.72
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.46
KOG1276|consensus	491		99.41
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.3
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.24
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.06
COG3349	485	Uncharacterized conserved protein [Function unknow	98.02
KOG4254|consensus	561		97.66
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.65
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.43
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	97.3
COG2081	408	Predicted flavoproteins [General function predicti	97.27
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.44
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.23
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.11
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	96.1
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.78
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.69
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	95.49
PRK10015	429	oxidoreductase; Provisional	95.25
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.23
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.08
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.9
COG0579	429	Predicted dehydrogenase [General function predicti	94.46
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	94.41
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	94.11
PRK11728	393	hydroxyglutarate oxidase; Provisional	94.1
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	93.92
PTZ00383	497	malate:quinone oxidoreductase; Provisional	93.5
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	93.28
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	93.22
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	93.02
PRK06847	375	hypothetical protein; Provisional	92.9
TIGR00275	400	flavoprotein, HI0933 family. The model when search	92.88
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	92.88
PRK07236	386	hypothetical protein; Provisional	92.76
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	92.74
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	92.6
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	92.52
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	92.5
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	92.48
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	92.45
PRK07588	391	hypothetical protein; Provisional	91.69
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	91.59
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	91.57
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	91.5
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	91.46
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	91.43
PRK09126	392	hypothetical protein; Provisional	91.19
PRK13339	497	malate:quinone oxidoreductase; Reviewed	91.09
PRK06753	373	hypothetical protein; Provisional	91.05
PRK05257	494	malate:quinone oxidoreductase; Validated	90.97
PRK06834	488	hypothetical protein; Provisional	90.85
PRK06116	450	glutathione reductase; Validated	90.14
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	90.08
PRK09897	534	hypothetical protein; Provisional	90.02
PRK07190	487	hypothetical protein; Provisional	89.74
PRK08163	396	salicylate hydroxylase; Provisional	89.69
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	89.27
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	89.13
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	89.06
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.93
PRK05868	372	hypothetical protein; Validated	88.9
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	88.81
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	88.51
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	88.5
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	88.4
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	88.31
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.25
PRK08013	400	oxidoreductase; Provisional	88.2
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	88.14
PLN02507	499	glutathione reductase	88.1
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	88.04
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	87.91
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	87.88
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	87.72
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	87.52
PRK07845	466	flavoprotein disulfide reductase; Reviewed	87.21
PRK07045	388	putative monooxygenase; Reviewed	86.9
PRK06184	502	hypothetical protein; Provisional	86.55
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	85.96
PRK10157	428	putative oxidoreductase FixC; Provisional	85.94
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	85.7
PLN02463	447	lycopene beta cyclase	85.5
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	85.41
PRK06996	398	hypothetical protein; Provisional	85.29
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	84.92
PRK08274	466	tricarballylate dehydrogenase; Validated	84.77
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	84.43
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	84.4
PRK14727	479	putative mercuric reductase; Provisional	84.14
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	84.1
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	83.87
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	83.75
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	83.63
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	83.27
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	83.07
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	82.68
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	82.68
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	82.41
PRK14694	468	putative mercuric reductase; Provisional	82.26
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	82.17
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	81.98
PRK07846	451	mycothione reductase; Reviewed	81.93
KOG2820|consensus	399		81.86
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	81.84
PTZ00052	499	thioredoxin reductase; Provisional	81.68
PRK06475	400	salicylate hydroxylase; Provisional	81.65
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	80.98
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	80.86
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	80.57
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	80.55

>KOG0685|consensus

Probab=100.00  E-value=1.3e-42  Score=339.45  Aligned_cols=306  Identities=40%  Similarity=0.732  Sum_probs=264.2

Q ss_pred             chhhhhhhhhccCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCC--ceEEcCCceEEEEec
Q psy7654           2 DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLG--KKLLLNKEVTKINWE   79 (373)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G--~~I~ln~~V~~I~~~   79 (373)
                      +.++|+.|++.+.++++++|.+.+..|..++|+....|.+-|+..+++-|++.++.+ .+.+|  ++++++++|.+|+.+
T Consensus       180 ~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~-~i~~~~~~~~~~~~rv~~I~~~  258 (498)
T KOG0685|consen  180 NVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQ-NIELGLWKRIHLNTRVENINWK  258 (498)
T ss_pred             HHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCc-chhcCchhhhcccccceeeccC
Confidence            568999999999999999999999999999998667788999999999999988642 34555  677778999999995


Q ss_pred             CCCcEEEEeCCCcEEEcCEEEEcCCccccccccc-ccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEe
Q psy7654          80 DANGVLVTCADGSQYSADKVLITVSLGVFKSDLI-TFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFW  158 (373)
Q Consensus        80 ~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i-~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~  158 (373)
                      ..+.|.|+++||+.+.||+||||+|+.+|+..+- .|.|+||..|++||+++.+|.+.|+||+|.+|||+.+..++.++|
T Consensus       259 ~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw  338 (498)
T KOG0685|consen  259 NTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLW  338 (498)
T ss_pred             CCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEE
Confidence            5678999999999999999999999999988554 689999999999999999999999999999999999988999988


Q ss_pred             cCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeee
Q psy7654         159 THDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGF  238 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~  238 (373)
                      -+.+..+ +                         +...                                ..|..+++.+
T Consensus       339 ~~e~l~e-~-------------------------r~~~--------------------------------~~w~~~~~~f  360 (498)
T KOG0685|consen  339 LDEDLEE-L-------------------------RSTL--------------------------------DAWEEDIMGF  360 (498)
T ss_pred             ecCcHHH-H-------------------------hhhh--------------------------------HHHHhhceEE
Confidence            6554221 1                         0000                                2466666777


Q ss_pred             eecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccc
Q psy7654         239 YLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMN  318 (373)
Q Consensus       239 ~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~  318 (373)
                      ...+..+.+|++|+.|..++.|+++|||++.+.+...|+++++. +.+|+|..+..++|..|||++|+|++..+|+... 
T Consensus       361 ~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n-~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~-  438 (498)
T KOG0685|consen  361 QPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKN-PEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGS-  438 (498)
T ss_pred             EEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCC-CCCCCchhhhhhcccCCCccCceeeEeecccccc-
Confidence            77777778999999999999999999999999999999999993 5799999999999999999999999999998664 


Q ss_pred             cchHhhccccc--CCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654         319 ASRHDLEAPLS--NGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS  369 (373)
Q Consensus       319 ~~~~~l~~p~~--~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~  369 (373)
                       ....+..|++  +.+++|.|.||||+|+..++.+++||++||+|.|+++++.
T Consensus       439 -d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~  490 (498)
T KOG0685|consen  439 -DTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEH  490 (498)
T ss_pred             -ccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHH
Confidence             3445555554  5567789999999999989999999999999999999874

>PLN02676 polyamine oxidase

Probab=100.00  E-value=3.9e-39  Score=329.06  Aligned_cols=284  Identities=31%  Similarity=0.494  Sum_probs=222.7

Q ss_pred             ccCCchhhcchhhhhh---hhccCCcceeeecCCcHHHHHHHHHHhCCCCCC-CCCCceEEcCCceEEEEecCCCcEEEE
Q psy7654          12 DASDSWFETSAKRYNS---FVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP-IDLGKKLLLNKEVTKINWEDANGVLVT   87 (373)
Q Consensus        12 ~~g~~~~~~S~~~~~~---~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~-~~~G~~I~ln~~V~~I~~~~~~~v~v~   87 (373)
                      ..+.+.+++|++.+..   +...++...++-.+||+++|+++|++.+..+.+ .-.+++|+||++|++|++ ++++|.|+
T Consensus       188 ~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~-~~~gV~V~  266 (487)
T PLN02676        188 EFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY-SKNGVTVK  266 (487)
T ss_pred             eeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE-cCCcEEEE
Confidence            3588899999998753   222333333222268999999999998742100 011257999999999999 78899999


Q ss_pred             eCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCC
Q psy7654          88 CADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPL  167 (373)
Q Consensus        88 ~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~  167 (373)
                      +.+|+++.||+||+|+|+++|+...|.|.|+||..++++++++.|+.+.||++.|++|||++......+++...+     
T Consensus       267 ~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~-----  341 (487)
T PLN02676        267 TEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHER-----  341 (487)
T ss_pred             ECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccc-----
Confidence            999989999999999999999875689999999999999999999999999999999999874222111111100     


Q ss_pred             cccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCce
Q psy7654         168 FKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLT  247 (373)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~  247 (373)
                                                          .+..                     ..|..  ++.. .+ +.++
T Consensus       342 ------------------------------------~~~~---------------------~~~~~--~~~~-~~-~~~~  360 (487)
T PLN02676        342 ------------------------------------RGYY---------------------PFWQH--LENE-YP-GSNV  360 (487)
T ss_pred             ------------------------------------cccc---------------------hhhhh--cccC-CC-CCCE
Confidence                                                0000                     01111  1101 12 2358


Q ss_pred             EEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhccc
Q psy7654         248 FLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAP  327 (373)
Q Consensus       248 L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p  327 (373)
                      |++++.++.+..+..++++++++.++++|+++||.  +.+.|..+..++|.+|||++|+|+++.||+..  ...+.|++|
T Consensus       361 l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~--~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~--~~~~~L~~P  436 (487)
T PLN02676        361 LFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP--NIPEATDILVPRWWSNRFFKGSYSNWPIGVSR--YEFDQIRAP  436 (487)
T ss_pred             EEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC--CCCCcceEEecccCCCCCCCcccCCCCCCCCh--hHHHHHhCC
Confidence            88899999999999999999999999999999985  46789999999999999999999999998753  356788999


Q ss_pred             ccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         328 LSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       328 ~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      ++      |||||||+++..++||||||++||+|||++|++.++.
T Consensus       437 ~g------ri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~  475 (487)
T PLN02676        437 VG------RVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK  475 (487)
T ss_pred             CC------ceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence            86      8999999999888999999999999999999987754

>PLN02568 polyamine oxidase

Probab=100.00  E-value=6.5e-39  Score=330.30  Aligned_cols=296  Identities=30%  Similarity=0.443  Sum_probs=225.2

Q ss_pred             hhhhhhccCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE
Q psy7654           6 KAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL   85 (373)
Q Consensus         6 ~~~~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~   85 (373)
                      ++.+.+....++..+|+..+..|..++|.+..  ++||+++|+++|++.+++       ..|++|++|++|++ .+++|.
T Consensus       205 ~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~--i~gG~~~Li~~La~~L~~-------~~I~ln~~V~~I~~-~~~~v~  274 (539)
T PLN02568        205 NTQRTYTSADDLSTLDLAAESEYRMFPGEEIT--IAKGYLSVIEALASVLPP-------GTIQLGRKVTRIEW-QDEPVK  274 (539)
T ss_pred             HhhccccccccHhhccccccCcceecCCCeEE--ECCcHHHHHHHHHhhCCC-------CEEEeCCeEEEEEE-eCCeEE
Confidence            33433333444455666555455556676543  489999999999999963       57999999999999 788899


Q ss_pred             EEeCCCcEEEcCEEEEcCCccccccc----ccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCC-----CCceeE
Q psy7654          86 VTCADGSQYSADKVLITVSLGVFKSD----LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD-----IRGYNF  156 (373)
Q Consensus        86 v~~~~G~~~~ad~VIvtiP~~~l~~~----~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~-----~~~~~~  156 (373)
                      |++.+|+++.||+||+|+|+++|+..    .|.|.|+||..++++|+++.|+.+.||++.|+++||...     ...+.+
T Consensus       275 V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~  354 (539)
T PLN02568        275 LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQM  354 (539)
T ss_pred             EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceee
Confidence            99999989999999999999999853    257999999999999999999999999999999998652     111122


Q ss_pred             EecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeee
Q psy7654         157 FWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY  236 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~  236 (373)
                      ++..++..                                      ..+.                    ....|...++
T Consensus       355 ~~~~~~~~--------------------------------------~~~~--------------------~~~~~~~~~~  376 (539)
T PLN02568        355 AFHRSDSE--------------------------------------ARHD--------------------KIPWWMRRTA  376 (539)
T ss_pred             eecccchh--------------------------------------hhcc--------------------cccchhhccc
Confidence            21111000                                      0000                    0012333333


Q ss_pred             eeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCC--------------------CCCCceEEecc
Q psy7654         237 GFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYT--------------------IPEPSRVFHSS  296 (373)
Q Consensus       237 ~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~--------------------~~~~~~~~~~~  296 (373)
                      +++....+.++|++|++|+.|.+++.++++++++.+++.|+++||....                    .++|..+..++
T Consensus       377 ~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~  456 (539)
T PLN02568        377 SICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSK  456 (539)
T ss_pred             cccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCC
Confidence            3333333567999999999999999999999999999999999984211                    14689999999


Q ss_pred             CCCCCccccccccccccCCccccchHhhcccccC-------CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654         297 WGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSN-------GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS  369 (373)
Q Consensus       297 W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~-------~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~  369 (373)
                      |.+|||++|+|++..||...  .....|++|+++       ....++||||||+|+..++|+||||++||+|||++|++.
T Consensus       457 W~~dp~~~GsYs~~~~g~~~--~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~  534 (539)
T PLN02568        457 WGTDPLFLGSYSYVAVGSSG--DDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQH  534 (539)
T ss_pred             CCCCCccCCccCCCcCCCCh--hHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999988898764  356899999862       112237999999999999999999999999999999986


Q ss_pred             CC
Q psy7654         370 DP  371 (373)
Q Consensus       370 ~~  371 (373)
                      .+
T Consensus       535 ~~  536 (539)
T PLN02568        535 YK  536 (539)
T ss_pred             hc
Confidence            54

>PLN02976 amine oxidase

Probab=100.00  E-value=2.8e-39  Score=349.54  Aligned_cols=272  Identities=29%  Similarity=0.483  Sum_probs=222.3

Q ss_pred             CCchhhcchhhhhh---hhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec---------CC
Q psy7654          14 SDSWFETSAKRYNS---FVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE---------DA   81 (373)
Q Consensus        14 g~~~~~~S~~~~~~---~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~---------~~   81 (373)
                      |.+++++|+.++..   |..++|.+.+  ++|||++|+++|++.+.          |+||++|++|.+.         .+
T Consensus       904 aa~L~eVSl~~~~qd~~y~~fgG~~~r--IkGGYqqLIeALAe~L~----------IrLNtpVtrId~s~~d~~~~~s~~  971 (1713)
T PLN02976        904 AALLKEVSLPYWNQDDVYGGFGGAHCM--IKGGYSNVVESLAEGLD----------IHLNHVVTDVSYGSKDAGASGSSR  971 (1713)
T ss_pred             cCCHHHhhhhhhhcccccccCCCceEE--eCCCHHHHHHHHHhhCC----------eecCCeEEEEEecCCcccccccCC
Confidence            78899999988763   4445665443  38999999999999773          9999999999983         14


Q ss_pred             CcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCC
Q psy7654          82 NGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHD  161 (373)
Q Consensus        82 ~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~  161 (373)
                      ++|.|++.+|+++.||+||||+|+++|+...|.|.|+||..+.++|+++.||.+.||+|.|+++||+.+...++..+...
T Consensus       972 dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edt 1051 (1713)
T PLN02976        972 KKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEET 1051 (1713)
T ss_pred             CcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccC
Confidence            67999999998999999999999999986558999999999999999999999999999999999998644443321110


Q ss_pred             CCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec
Q psy7654         162 DKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT  241 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~  241 (373)
                      +.                                        .|.                       .|.  .++... 
T Consensus      1052 dl----------------------------------------rG~-----------------------~~~--~wnlr~- 1065 (1713)
T PLN02976       1052 DL----------------------------------------RGQ-----------------------CFM--FWNVKK- 1065 (1713)
T ss_pred             CC----------------------------------------Cce-----------------------EEE--eccCCC-
Confidence            00                                        110                       011  122211 


Q ss_pred             CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccch
Q psy7654         242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR  321 (373)
Q Consensus       242 ~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~  321 (373)
                      +.+.++|++|++|..|..+..++++++++.+++.|+++||.. ..++|..+.+++|..|||++|+|++..||+..  ..+
T Consensus      1066 psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~-~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~--~d~ 1142 (1713)
T PLN02976       1066 TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEA-LVPDPVASVVTDWGRDPFSYGAYSYVAIGASG--EDY 1142 (1713)
T ss_pred             CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcc-cccCcceeEEecCCCCCCcCccccCCCCCCCc--hHH
Confidence            223468999999999999999999999999999999999952 35789999999999999999999999999754  356


Q ss_pred             HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      ..|.+|+++     +||||||+|+..++||||||++||+|||.+|+..+.
T Consensus      1143 d~LAePVgg-----RLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976       1143 DILGRPVEN-----CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred             HHHhCCCCC-----cEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            789999874     799999999998999999999999999999998763

>PLN03000 amine oxidase

Probab=100.00  E-value=5.8e-39  Score=339.30  Aligned_cols=273  Identities=27%  Similarity=0.439  Sum_probs=220.4

Q ss_pred             CCchhhcchhhhhhhh--ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC
Q psy7654          14 SDSWFETSAKRYNSFV--THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG   91 (373)
Q Consensus        14 g~~~~~~S~~~~~~~~--~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G   91 (373)
                      +..++.+|+..+....  ...|.+.+  ++||+++|+++|++.|.          |++|++|++|++ .+++|.|++.+ 
T Consensus       350 as~ls~LSl~~wdqd~~~e~~G~~~~--v~GG~~~LieaLa~~L~----------I~Ln~~Vt~I~~-~~dgV~V~~~~-  415 (881)
T PLN03000        350 AGLVSKLSLAFWDQDDPYDMGGDHCF--LPGGNGRLVQALAENVP----------ILYEKTVQTIRY-GSNGVKVIAGN-  415 (881)
T ss_pred             ccCHHHHHHHHhhhcccccCCCceEE--eCCCHHHHHHHHHhhCC----------cccCCcEEEEEE-CCCeEEEEECC-
Confidence            4568888876553311  23455443  48999999999999873          999999999999 78899998764 


Q ss_pred             cEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccc
Q psy7654          92 SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDT  171 (373)
Q Consensus        92 ~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
                      +++.||+||||+|+.+++...|.|.|+||..+.++|+++.|+.+.||++.|+++||+.+...+++++...+.        
T Consensus       416 ~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~--------  487 (881)
T PLN03000        416 QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNY--------  487 (881)
T ss_pred             cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCC--------
Confidence            489999999999999999655899999999999999999999999999999999999876666666322110        


Q ss_pred             cccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEE
Q psy7654         172 AVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGW  251 (373)
Q Consensus       172 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~  251 (373)
                                                      ++..                       +  .++++.. ..+..+|++|
T Consensus       488 --------------------------------rg~~-----------------------~--~f~s~sp-~~G~pVLvaf  509 (881)
T PLN03000        488 --------------------------------RGEF-----------------------F--LFYSYAP-VAGGPLLIAL  509 (881)
T ss_pred             --------------------------------Ccee-----------------------E--EEeCCCC-CCCCcEEEEE
Confidence                                            1100                       0  0112221 1234589999


Q ss_pred             ecchhhHHhhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccC
Q psy7654         252 ISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSN  330 (373)
Q Consensus       252 ~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~  330 (373)
                      ++|+.|..++.++++++++.++++|+++||.. ...++|..+.+++|..|||++|+|++..||+..  ..++.|.+|+++
T Consensus       510 v~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~--~~~d~LaePv~~  587 (881)
T PLN03000        510 VAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASG--DDYDILAESVGD  587 (881)
T ss_pred             ecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCch--HHHHHHhCcCCC
Confidence            99999999999999999999999999999842 134689999999999999999999999999754  467889999742


Q ss_pred             CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         331 GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       331 ~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                          +|||||||||+..++||||||++||+|||.+|++.+.+
T Consensus       588 ----GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~  625 (881)
T PLN03000        588 ----GRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA  625 (881)
T ss_pred             ----CcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence                28999999999889999999999999999999987653

>PLN02529 lysine-specific histone demethylase 1

Probab=100.00  E-value=2.9e-37  Score=325.01  Aligned_cols=270  Identities=26%  Similarity=0.445  Sum_probs=215.6

Q ss_pred             CCchhhcchhhhhhhh--ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC
Q psy7654          14 SDSWFETSAKRYNSFV--THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG   91 (373)
Q Consensus        14 g~~~~~~S~~~~~~~~--~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G   91 (373)
                      +.+++.+|+..+..+.  .++|.+.+  ++|||++|+++|++.+          .|++|++|++|++ ++++|.|++. +
T Consensus       326 ~~~~s~LSl~~~~~~~~~e~~G~~~~--i~GG~~~Li~aLA~~L----------~IrLnt~V~~I~~-~~dGVtV~t~-~  391 (738)
T PLN02529        326 AGCLSDLSAAYWDQDDPYEMGGDHCF--LAGGNWRLINALCEGV----------PIFYGKTVDTIKY-GNDGVEVIAG-S  391 (738)
T ss_pred             CCChHHhhhhHhhhccccccCCceEE--ECCcHHHHHHHHHhcC----------CEEcCCceeEEEE-cCCeEEEEEC-C
Confidence            5668899998876532  34455443  4899999999999876          3999999999999 7888998764 4


Q ss_pred             cEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccc
Q psy7654          92 SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDT  171 (373)
Q Consensus        92 ~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
                      +++.||+||||+|++++++..|.|.|+||+.+.++|+++.|+++.||++.|+++||+.+...+++++.....        
T Consensus       392 ~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~--------  463 (738)
T PLN02529        392 QVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNK--------  463 (738)
T ss_pred             EEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCC--------
Confidence            589999999999999998655889999999999999999999999999999999998764455554221110        


Q ss_pred             cccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEE
Q psy7654         172 AVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGW  251 (373)
Q Consensus       172 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~  251 (373)
                                                      .+.                        |. ..++....++ ..+|++|
T Consensus       464 --------------------------------~g~------------------------~~-~~~~~~~~~g-gpvLvaf  485 (738)
T PLN02529        464 --------------------------------RGE------------------------FF-LFYGYHTVSG-GPALVAL  485 (738)
T ss_pred             --------------------------------Cce------------------------EE-EEecCCCCCC-CCEEEEE
Confidence                                            010                        00 0011111122 3589999


Q ss_pred             ecchhhHHhhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccC
Q psy7654         252 ISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSN  330 (373)
Q Consensus       252 ~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~  330 (373)
                      ++|+.|..+..++++++++.++++|+++||.. ...++|..+.+++|.+|||++|+|++..||...  ..+..+.+|..+
T Consensus       486 v~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~--~d~~~La~pv~g  563 (738)
T PLN02529        486 VAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSG--SDYDILAESVSG  563 (738)
T ss_pred             ECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCch--hHHHHHhCCCCC
Confidence            99999999999999999999999999999841 235688999999999999999999998887643  235677777642


Q ss_pred             CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         331 GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       331 ~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                           +||||||+|+..++||||||++||.|||.+|++.+
T Consensus       564 -----rL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l  598 (738)
T PLN02529        564 -----RLFFAGEATTRQYPATMHGAFLSGLREASRILHVA  598 (738)
T ss_pred             -----CEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHH
Confidence                 89999999999899999999999999999999865

>PLN02268 probable polyamine oxidase

Probab=100.00  E-value=6.4e-37  Score=308.71  Aligned_cols=264  Identities=30%  Similarity=0.413  Sum_probs=214.1

Q ss_pred             cCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc
Q psy7654          13 ASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS   92 (373)
Q Consensus        13 ~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~   92 (373)
                      .+.+++++|++.+..+....|.+.+  +++||++|+++|++.+          +|++|++|++|.+ .+++|.|++.+|+
T Consensus       171 ~~~~~~~ls~~~~~~~~~~~g~~~~--~~~G~~~l~~~l~~~~----------~i~~~~~V~~i~~-~~~~v~v~~~~g~  237 (435)
T PLN02268        171 FAADADTISLKSWDQEELLEGGHGL--MVRGYDPVINTLAKGL----------DIRLNHRVTKIVR-RYNGVKVTVEDGT  237 (435)
T ss_pred             hCCChHhCchhhcCCccccCCCcee--ecCCHHHHHHHHhccC----------ceeCCCeeEEEEE-cCCcEEEEECCCc
Confidence            4677999999876443333454433  3799999999998754          5999999999999 7888999998888


Q ss_pred             EEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCccccc
Q psy7654          93 QYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTA  172 (373)
Q Consensus        93 ~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
                      ++.||+||+|+|+++++...|.|.|+||..+.++++++.|+++.|+++.|+++||++. ..++.+... .          
T Consensus       238 ~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~-~----------  305 (435)
T PLN02268        238 TFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPT-S----------  305 (435)
T ss_pred             EEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCC-C----------
Confidence            8999999999999999865578999999999999999999999999999999999863 222221100 0          


Q ss_pred             ccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEe
Q psy7654         173 VVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWI  252 (373)
Q Consensus       173 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~  252 (373)
                                                     .+                       ..|..   +... ..+..+|++|+
T Consensus       306 -------------------------------~~-----------------------~~~~~---~~~~-~~g~~~l~~~~  327 (435)
T PLN02268        306 -------------------------------YG-----------------------CSYFL---NLHK-ATGHPVLVYMP  327 (435)
T ss_pred             -------------------------------CC-----------------------ceEEE---eccc-CCCCCEEEEEe
Confidence                                           00                       01111   1111 12346888999


Q ss_pred             cchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCC
Q psy7654         253 SGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQ  332 (373)
Q Consensus       253 ~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~  332 (373)
                      +|+.+..+..++++++++.++++|+++||.   ...|..+.+++|..|||++|+|+++.||+..  ...+.|.+|++   
T Consensus       328 ~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~---~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~--~~~~~l~~p~~---  399 (435)
T PLN02268        328 AGRLARDIEKLSDEAAANFAMSQLKKMLPD---ATEPVQYLVSRWGSDPNSLGCYSYDLVGKPH--DLYERLRAPVD---  399 (435)
T ss_pred             ccHHHHHHHhCCHHHHHHHHHHHHHHHcCC---CCCccEEEecccCCCCCCCccCCCCCCCCCH--HHHHHHhCCCC---
Confidence            999999999999999999999999999984   4578999999999999999999999998642  35678899986   


Q ss_pred             CCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         333 GKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       333 ~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                         |||||||+++..++||||||++||+|||++|++.|
T Consensus       400 ---~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l  434 (435)
T PLN02268        400 ---NLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL  434 (435)
T ss_pred             ---CeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence               79999999999889999999999999999999865

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=100.00  E-value=7e-37  Score=323.52  Aligned_cols=273  Identities=27%  Similarity=0.455  Sum_probs=217.4

Q ss_pred             cCCchhhcchhhhhhh--hccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC
Q psy7654          13 ASDSWFETSAKRYNSF--VTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD   90 (373)
Q Consensus        13 ~g~~~~~~S~~~~~~~--~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~   90 (373)
                      .|..++.+|+..+...  ...+|.+..  ++|||++|+++|++.+.          |++|++|++|.+ .+++|.|+ .+
T Consensus       405 ~gs~ls~LSl~~w~qd~~~e~~G~~~~--v~GG~~~Li~aLa~~L~----------I~ln~~V~~I~~-~~dgV~V~-~~  470 (808)
T PLN02328        405 NASLMSNLSMAYWDQDDPYEMGGDHCF--IPGGNDTFVRELAKDLP----------IFYERTVESIRY-GVDGVIVY-AG  470 (808)
T ss_pred             chhhHHHHHhhhhhccccccCCCeEEE--ECCcHHHHHHHHHhhCC----------cccCCeeEEEEE-cCCeEEEE-eC
Confidence            3566788887665331  123344433  48999999999999873          999999999999 78888884 56


Q ss_pred             CcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCccc
Q psy7654          91 GSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKD  170 (373)
Q Consensus        91 G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  170 (373)
                      |+++.||+||||+|++++++..|.|.|+||..+.++|+++.|+++.||++.|+++||+.....++++..+...       
T Consensus       471 G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~-------  543 (808)
T PLN02328        471 GQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSM-------  543 (808)
T ss_pred             CeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCC-------
Confidence            7789999999999999998655889999999999999999999999999999999999765566665321100       


Q ss_pred             ccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEE
Q psy7654         171 TAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLG  250 (373)
Q Consensus       171 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~  250 (373)
                                                       .|..+                      +   .+++.. ..+..+|++
T Consensus       544 ---------------------------------rG~~~----------------------l---f~s~s~-~~G~~vLva  564 (808)
T PLN02328        544 ---------------------------------RGEFF----------------------L---FYSYSS-VSGGPLLIA  564 (808)
T ss_pred             ---------------------------------CceEE----------------------E---EecCCC-CCCCcEEEE
Confidence                                             11100                      0   011111 122468999


Q ss_pred             EecchhhHHhhcCCHHHHHHHHHHHHHHHhCCC-CCCCCCceEEeccCCCCCccccccccccccCCccccchHhhccccc
Q psy7654         251 WISGASARFMETLSDEQIKTESMKAFRFFLGAN-YTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLS  329 (373)
Q Consensus       251 ~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~  329 (373)
                      |++|+.+..+..++++++++.++++|+++||.. ...++|..+.+++|..|||++|+|+++.+|+..  ..++.|.+|+.
T Consensus       565 fv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~--~~~~~LaePv~  642 (808)
T PLN02328        565 LVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSG--DDYDILAESVG  642 (808)
T ss_pred             EecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCch--hHHHHHhccCC
Confidence            999999999999999999999999999999842 124689999999999999999999999998753  35678888874


Q ss_pred             CCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         330 NGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       330 ~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      +    +|||||||+|+..++||||||++||+|||.+|++.++
T Consensus       643 ~----GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~  680 (808)
T PLN02328        643 D----GRVFFAGEATNKQYPATMHGAFLSGMREAANILRVAR  680 (808)
T ss_pred             C----CCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHh
Confidence            2    2899999999988899999999999999999998665

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-33  Score=277.06  Aligned_cols=241  Identities=26%  Similarity=0.403  Sum_probs=200.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCC
Q psy7654          41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLP  120 (373)
Q Consensus        41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp  120 (373)
                      .|||++|++++++++.        .+|.++++|.+|.+ .+++|.|++.+.+++.+|+||||+|+.++.+  |.|+|.++
T Consensus       205 ~GGmd~la~Afa~ql~--------~~I~~~~~V~rI~q-~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~  273 (450)
T COG1231         205 LGGMDQLAEAFAKQLG--------TRILLNEPVRRIDQ-DGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLP  273 (450)
T ss_pred             CccHHHHHHHHHHHhh--------ceEEecCceeeEEE-cCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCC
Confidence            5999999999999886        58999999999999 9999999998855899999999999999998  99999999


Q ss_pred             HHHHHHHhcCCCcceeEEEEEcCCCCCCCCC-CceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654         121 PQKKNIIESLFLGTVDKVFVRFPQKWWPDDI-RGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW  199 (373)
Q Consensus       121 ~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  199 (373)
                      ..++++++.+.|++.+|+.+.|++|||++.. .+...+ .+..    +                                
T Consensus       274 ~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~-tD~~----~--------------------------------  316 (450)
T COG1231         274 AEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESL-TDLG----L--------------------------------  316 (450)
T ss_pred             HHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEe-ecCC----c--------------------------------
Confidence            9999999999999999999999999999863 221111 1100    0                                


Q ss_pred             CCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEE-EecchhhHHhhcCCHHHHHHHHHHHHHH
Q psy7654         200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLG-WISGASARFMETLSDEQIKTESMKAFRF  278 (373)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~-~~~g~~a~~~~~ls~e~~~~~~~~~L~~  278 (373)
                                                      ....++.....++.++|.+ |..|+.|..+..++++++++.++..+++
T Consensus       317 --------------------------------~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~  364 (450)
T COG1231         317 --------------------------------GFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAK  364 (450)
T ss_pred             --------------------------------ceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhh
Confidence                                            0000111111234567777 7889999999999999999999999999


Q ss_pred             HhCCCCCCCCCceE-EeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEec-cccCCCCcchhhHHH
Q psy7654         279 FLGANYTIPEPSRV-FHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAG-EASNEHQYGTVNGAV  356 (373)
Q Consensus       279 ~~g~~~~~~~~~~~-~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAG-d~~s~~~~g~veGA~  356 (373)
                      +||.  +...+.+. ...+|.+|||+.|+|..+.+|+..  +..+.|..|++      |||||| ||.+ .+.||||||+
T Consensus       365 ~~g~--~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~--~~~~~l~~p~g------RIh~AgtEhas-~~~Gw~eGAi  433 (450)
T COG1231         365 LFGD--EAADPFDYGASVDWSKDPWTLGGTAAYPPGQRT--KLYPTLPAPHG------RIHFAGTEHAS-EFGGWLEGAI  433 (450)
T ss_pred             hCCh--hhccccccceeeecccCCcCCccccccCCcccc--cccccccCCCC------ceEEeeecccc-cccchhHHHH
Confidence            9995  44556655 899999999999988999999865  67888898887      999999 6655 4789999999


Q ss_pred             HHHHHHHHHHHhhCCC
Q psy7654         357 ETGWREADRILKSDPA  372 (373)
Q Consensus       357 ~SG~~AA~~i~~~~~~  372 (373)
                      +||.+||.+|+..++.
T Consensus       434 ~Sg~~AA~ei~~~l~s  449 (450)
T COG1231         434 RSGQRAAAEIHALLSS  449 (450)
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999999988764

>KOG0029|consensus

Probab=99.97  E-value=1.1e-30  Score=265.85  Aligned_cols=284  Identities=33%  Similarity=0.509  Sum_probs=222.5

Q ss_pred             chhhhhhhhhccCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC
Q psy7654           2 DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA   81 (373)
Q Consensus         2 ~~~~~~~~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~   81 (373)
                      .|++...+... ...++++|+........+++...-....+|+..++.+|++.+          .|+++++|.+|.+.++
T Consensus       177 ~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l----------~I~~~~~v~~i~~~~~  245 (501)
T KOG0029|consen  177 QWHLVNLELTF-IAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGL----------DIHLNKRVRKIKYGDD  245 (501)
T ss_pred             HHHHHHHHHHh-hccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCc----------ceeeceeeEEEEEecC
Confidence            35555555555 455777777776665544433111113899999999999855          6999999999999444


Q ss_pred             CcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCC
Q psy7654          82 NGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHD  161 (373)
Q Consensus        82 ~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~  161 (373)
                      +.+.++.++++.+.+|+||+|+|+++++...|.|.|+||..+.++|++++++.+.||++.|+..||+.+.+-++.+ +.+
T Consensus       246 ~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~-~~~  324 (501)
T KOG0029|consen  246 GAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIV-PET  324 (501)
T ss_pred             CceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEc-ccc
Confidence            4356666666669999999999999999877899999999999999999999999999999999998654444433 110


Q ss_pred             CCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec
Q psy7654         162 DKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT  241 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~  241 (373)
                      ..                                       .++                          ...+++....
T Consensus       325 ~~---------------------------------------~~~--------------------------~~~f~~~~~~  339 (501)
T KOG0029|consen  325 SV---------------------------------------LRG--------------------------LFTFYDCKPV  339 (501)
T ss_pred             cc---------------------------------------ccc--------------------------hhhhhhcCcc
Confidence            00                                       001                          0011222222


Q ss_pred             CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccch
Q psy7654         242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR  321 (373)
Q Consensus       242 ~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~  321 (373)
                      .+ ..+|+.++.+..++.+..++++++++.++..|+++|+. .+.++|++..+.+|..|+++.|+|++..++...  ..+
T Consensus       340 ~~-~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~-~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~--~~y  415 (501)
T KOG0029|consen  340 AG-HPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGS-EEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDG--DDY  415 (501)
T ss_pred             CC-CCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhcc-CcCCCccceeeeeecccccCCccccccCCCCCh--hHH
Confidence            23 34888888899999999999999999999999999993 368899999999999999999999999888654  357


Q ss_pred             HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      +.+.+|+.+     ++||||++|+..++|+|+||+.||.+||..|++.+.
T Consensus       416 ~~l~~pi~~-----~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~  460 (501)
T KOG0029|consen  416 DRLAEPIKN-----RVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI  460 (501)
T ss_pred             HHHhccccC-----cEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence            889999884     799999999999999999999999999999998664

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.96  E-value=4.7e-28  Score=239.15  Aligned_cols=241  Identities=30%  Similarity=0.482  Sum_probs=193.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCC
Q psy7654          41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLP  120 (373)
Q Consensus        41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp  120 (373)
                      .|++..+...+++.+.        ++|++|++|++|+. ++++|.|++.+|++++||+||+|+|++.+..  |.+.|++|
T Consensus       208 ~g~~~~~~~~~~~~~g--------~~i~l~~~V~~I~~-~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~  276 (450)
T PF01593_consen  208 MGGLSLALALAAEELG--------GEIRLNTPVTRIER-EDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLP  276 (450)
T ss_dssp             TTTTHHHHHHHHHHHG--------GGEESSEEEEEEEE-ESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSH
T ss_pred             ccchhHHHHHHHhhcC--------ceeecCCcceeccc-cccccccccccceEEecceeeecCchhhhhh--hhhccccc
Confidence            5777777777777554        68999999999999 7899999999999999999999999999987  77899999


Q ss_pred             HHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCC
Q psy7654         121 PQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWP  200 (373)
Q Consensus       121 ~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  200 (373)
                      ..+.+++++++|.++.||++.|+.+||+.+....++++.+...                                     
T Consensus       277 ~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  319 (450)
T PF01593_consen  277 EDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFS-------------------------------------  319 (450)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTS-------------------------------------
T ss_pred             ccccccccccccCcceeEEEeeecccccccccccceecccCcc-------------------------------------
Confidence            9999999999999999999999999999864344444322100                                     


Q ss_pred             CCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecC--CCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHH
Q psy7654         201 DDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTT--EDPLTFLGWISGASARFMETLSDEQIKTESMKAFRF  278 (373)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~--~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~  278 (373)
                                                    +...+++....+  .+..+++.|+.++.+..+..++++++++.++++|++
T Consensus       320 ------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~  369 (450)
T PF01593_consen  320 ------------------------------PIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRK  369 (450)
T ss_dssp             ------------------------------SEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ------------------------------ccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhh
Confidence                                          000001111111  235678889999888889999999999999999999


Q ss_pred             HhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHH
Q psy7654         279 FLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET  358 (373)
Q Consensus       279 ~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~S  358 (373)
                      +++.. ..++|.++.+++|.+++|..|+|++..++...  ...+.+.+|+.     ++||||||+++..+.|+|+||+.|
T Consensus       370 ~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~l~~aG~~~~~~~~~~~~gA~~s  441 (450)
T PF01593_consen  370 ILPGA-SIPDPIDITVTRWSRDPYPRGSYSYFPPGQSS--QFRPALRTPID-----PGLYFAGDWTSPGYPGGIEGAILS  441 (450)
T ss_dssp             HHTTG-GGGEESEEEEEECTTSTTTSSSCECHCTTHHH--HHHHHHHSCBT-----TTEEE-SGGGSSSSTTSHHHHHHH
T ss_pred             ccccc-cccccccccccccccccccccccccccccccc--cccccccCCcc-----eEEEEeecccCCCCCCcHHHHHHH
Confidence            99941 35677899999999999999999998887641  25678888874     379999999998777999999999


Q ss_pred             HHHHHHHHH
Q psy7654         359 GWREADRIL  367 (373)
Q Consensus       359 G~~AA~~i~  367 (373)
                      |++||++|+
T Consensus       442 G~~aA~~il  450 (450)
T PF01593_consen  442 GRRAAEEIL  450 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.93  E-value=3e-24  Score=214.05  Aligned_cols=263  Identities=17%  Similarity=0.188  Sum_probs=179.2

Q ss_pred             hhhhhhhhccCCchhhcchhhhhhhhc--c---CCcceeeecCCcHHHHHHH-HHHhCCCCCCCCCCceEEcCCceEEEE
Q psy7654           4 LGKAQNSLDASDSWFETSAKRYNSFVT--H---EGCEDTVWKKGGYGNVLKL-LLKQMPGQTPIDLGKKLLLNKEVTKIN   77 (373)
Q Consensus         4 ~~~~~~~~~~g~~~~~~S~~~~~~~~~--~---~g~~~~~~~~gG~~~L~~~-L~~~l~~~~~~~~G~~I~ln~~V~~I~   77 (373)
                      ++...+...++.+.+++|+..+...+.  +   .....+.+++||+++++.. |++.+.     ++|++|++|++|++|.
T Consensus       150 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~-----~~g~~i~~~~~V~~i~  224 (419)
T TIGR03467       150 LWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD-----SRGGEVRLGTRVRSIE  224 (419)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH-----HcCCEEEcCCeeeEEE
Confidence            344444455678899999998876542  1   1111233568999887755 888885     5678999999999999


Q ss_pred             ecCCCcEEEEe-CCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeE
Q psy7654          78 WEDANGVLVTC-ADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNF  156 (373)
Q Consensus        78 ~~~~~~v~v~~-~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~  156 (373)
                      . ++++|.+.. .+|+++.||+||+|+|++++..  + + |.  ..+.++++++.|+++.++++.|++++|... +..++
T Consensus       225 ~-~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~--l-l-~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~  296 (419)
T TIGR03467       225 A-NAGGIRALVLSGGETLPADAVVLAVPPRHAAS--L-L-PG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGL  296 (419)
T ss_pred             E-cCCcceEEEecCCccccCCEEEEcCCHHHHHH--h-C-CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-Ceeee
Confidence            9 777765443 3667889999999999999987  3 1 22  146678899999999999999999998542 22222


Q ss_pred             EecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeee
Q psy7654         157 FWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY  236 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~  236 (373)
                      +   ...                                                                 ..|...  
T Consensus       297 ~---~~~-----------------------------------------------------------------~~~~~~--  306 (419)
T TIGR03467       297 V---GGL-----------------------------------------------------------------AQWLFD--  306 (419)
T ss_pred             c---CCc-----------------------------------------------------------------eeEEEE--
Confidence            1   000                                                                 011111  


Q ss_pred             eeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCc
Q psy7654         237 GFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDK  316 (373)
Q Consensus       237 ~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~  316 (373)
                       .....+..+.+..++.+  +..+..++++++++.++++|.++||.. ....+....+.+|...     .|. +.+|...
T Consensus       307 -~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~-~~~g~~~  376 (419)
T TIGR03467       307 -RGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRV-AGAKPLWARVIKEKRA-----TFA-ATPGLNR  376 (419)
T ss_pred             -CCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCcc-ccCCccceEEEEccCC-----ccc-cCCcccc
Confidence             11111223455555554  455778899999999999999999852 2234666666777642     232 2355431


Q ss_pred             cccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654         317 MNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK  368 (373)
Q Consensus       317 ~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~  368 (373)
                         ..+.+..|.+      +||||||+++..++++||||++||.+||++|++
T Consensus       377 ---~~~~~~~~~~------~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~  419 (419)
T TIGR03467       377 ---LRPGARTPWP------NLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK  419 (419)
T ss_pred             ---cCCCCCCCcC------CEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence               2334455554      899999999987788999999999999999874

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.92  E-value=4.2e-24  Score=216.81  Aligned_cols=241  Identities=16%  Similarity=0.273  Sum_probs=183.5

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCC
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPL  119 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L  119 (373)
                      .+||+++|+++|++.+..       ++|++|++|++|++ ++++|.|++.+|+++.||+||+|+|++.+..    +.|.+
T Consensus       220 ~~gG~~~l~~~l~~~l~~-------~~i~~~~~V~~I~~-~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~  287 (462)
T TIGR00562       220 LATGLETLPEEIEKRLKL-------TKVYKGTKVTKLSH-RGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSEL  287 (462)
T ss_pred             cchhHHHHHHHHHHHhcc-------CeEEcCCeEEEEEe-cCCcEEEEECCCcEEEcCEEEECCCHHHHHH----Hhccc
Confidence            489999999999998852       58999999999999 7888999888888899999999999999876    33668


Q ss_pred             CHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654         120 PPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW  199 (373)
Q Consensus       120 p~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  199 (373)
                      ++.+.++++++.|.++.+|.+.|++++|+....+++++++.++... +                +|              
T Consensus       288 ~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~-~----------------~~--------------  336 (462)
T TIGR00562       288 SNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFA-I----------------LG--------------  336 (462)
T ss_pred             CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCc-e----------------EE--------------
Confidence            8888999999999999999999999999876567776643221100 0                00              


Q ss_pred             CCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHH
Q psy7654         200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFF  279 (373)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~  279 (373)
                                                   ..|.+..++... +.+..+|++|+++..+..+..++++++++.++++|+++
T Consensus       337 -----------------------------~i~~s~~~p~~~-p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~  386 (462)
T TIGR00562       337 -----------------------------CIFTSKLFPNRA-PPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKV  386 (462)
T ss_pred             -----------------------------EEEEccccCCcC-CCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence                                         011111121111 22345788899887777788899999999999999999


Q ss_pred             hCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHH
Q psy7654         280 LGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETG  359 (373)
Q Consensus       280 ~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG  359 (373)
                      +|.  . ..|..+.+++|..      +++.+.+|+..   ..+.+.+-+..  ..++|++||+++.+.   .|++|+.||
T Consensus       387 ~gi--~-~~p~~~~v~rw~~------a~P~~~~g~~~---~~~~i~~~l~~--~~~~l~l~G~~~~g~---~i~~~i~sg  449 (462)
T TIGR00562       387 LNI--N-NEPEMLCVTRWHR------AIPQYHVGHDQ---RLKEARELLES--AYPGVFLTGNSFEGV---GIPDCIDQG  449 (462)
T ss_pred             hCC--C-CCCcEEEEeEccc------cCCCCCCChHH---HHHHHHHHHHh--hCCCEEEeccccCCC---cHHHHHHHH
Confidence            986  2 3488999999985      78888888642   23433321110  124899999998753   799999999


Q ss_pred             HHHHHHHHhhC
Q psy7654         360 WREADRILKSD  370 (373)
Q Consensus       360 ~~AA~~i~~~~  370 (373)
                      .+||++|++.+
T Consensus       450 ~~~a~~~~~~~  460 (462)
T TIGR00562       450 KAAASDVLTFL  460 (462)
T ss_pred             HHHHHHHHHhh
Confidence            99999998876

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.92  E-value=7.1e-24  Score=215.54  Aligned_cols=274  Identities=14%  Similarity=0.153  Sum_probs=189.8

Q ss_pred             hhhhhhhccCCchhhcchhhhhhh----hcc-----------------CCcceeeecCCcHHHHHHHHHHhCCCCCCCCC
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNSF----VTH-----------------EGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDL   63 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~~----~~~-----------------~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~   63 (373)
                      +...+...++.+.+++|+...+.+    +..                 .+...+..++|||++|+++|++.+..      
T Consensus       165 ~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~------  238 (463)
T PRK12416        165 IAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE------  238 (463)
T ss_pred             HHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc------
Confidence            333444556778999998652221    110                 11111223589999999999999862      


Q ss_pred             CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcC
Q psy7654          64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFP  143 (373)
Q Consensus        64 G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~  143 (373)
                       ++|++|++|++|++ ++++|.|++.+|+++.||+||+|+|++++..  |.+.|.++    +.++++.+.++.+|++.|+
T Consensus       239 -~~i~~~~~V~~I~~-~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~~~~~v~l~~~  310 (463)
T PRK12416        239 -TVVKKGAVTTAVSK-QGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNSSLISIYLGFD  310 (463)
T ss_pred             -ccEEcCCEEEEEEE-cCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCCceEEEEEEec
Confidence             47999999999999 7888999888888899999999999999877  55666554    3567888999999999999


Q ss_pred             CCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccc
Q psy7654         144 QKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDT  223 (373)
Q Consensus       144 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  223 (373)
                      +++|..+..+++++.+..+.   +     .         ..                    +                  
T Consensus       311 ~~~~~~~~~g~G~l~~~~~~---~-----~---------~~--------------------~------------------  335 (463)
T PRK12416        311 ILDEQLPADGTGFIVTENSD---L-----H---------CD--------------------A------------------  335 (463)
T ss_pred             hhhcCCCCCceEEEeeCCCC---C-----e---------EE--------------------E------------------
Confidence            88776555567776443221   0     0         00                    0                  


Q ss_pred             cccCCCcceeeeeeeeecCCCCceEEEEec--chhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCC
Q psy7654         224 AVVDGAPWIVDLYGFYLTTEDPLTFLGWIS--GASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK  301 (373)
Q Consensus       224 ~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~--g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp  301 (373)
                           ..|.+..|... .++...++..|+.  ++.+..+..++++++.+.++++|++++|.   ..+|..+.+++|.+  
T Consensus       336 -----~~~~s~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~---~~~p~~~~v~~W~~--  404 (463)
T PRK12416        336 -----CTWTSRKWKHT-SGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGI---KGEPEVVEVTNWKD--  404 (463)
T ss_pred             -----EEeecCCCCCc-CCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCC---CCCceEEEEEEccc--
Confidence                 11222222211 1233333344554  45677788999999999999999999996   35788999999985  


Q ss_pred             ccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       302 ~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                          +++.+.+|+..   ..+.+.+.+.+  ..++|||||+++.+.   +|+||+.||++||++|++.+
T Consensus       405 ----a~P~y~~~~~~---~~~~~~~~l~~--~~~~l~~aG~~~~g~---~i~~ai~sg~~aA~~i~~~~  461 (463)
T PRK12416        405 ----LMPKYHLEHNQ---AVQSLQEKMMN--LYPNIYLAGASYYGV---GIGACIGNGKNTANEIIATL  461 (463)
T ss_pred             ----cCCCcCcCHHH---HHHHHHHHHHh--hCCCeEEeccccccc---cHHHHHHHHHHHHHHHHHHh
Confidence                56666666532   22222222211  124899999998864   59999999999999999765

>PLN02576 protoporphyrinogen oxidase

Probab=99.92  E-value=1.3e-23  Score=215.24  Aligned_cols=244  Identities=20%  Similarity=0.296  Sum_probs=174.0

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeC--CC-cEEEcCEEEEcCCccccccccccc
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCA--DG-SQYSADKVLITVSLGVFKSDLITF  115 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~--~G-~~~~ad~VIvtiP~~~l~~~~i~f  115 (373)
                      .+|||++|+++|++.+.+       ++|++|++|++|++ .+++ |.|++.  +| +++.||+||+|+|++++..  +. 
T Consensus       234 ~~gG~~~L~~~la~~l~~-------~~i~l~~~V~~I~~-~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~--ll-  302 (496)
T PLN02576        234 FRGGLQTLPDALAKRLGK-------DKVKLNWKVLSLSK-NDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSE--ML-  302 (496)
T ss_pred             ccchHHHHHHHHHHhhCc-------CcEEcCCEEEEEEE-CCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHH--Hh-
Confidence            489999999999998742       47999999999999 6665 666543  45 3689999999999999987  32 


Q ss_pred             CCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCC------CCCceeEEecCCCCCCCCcccccccCCCCccccccccccc
Q psy7654         116 VPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPD------DIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDK  189 (373)
Q Consensus       116 ~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  189 (373)
                       +.+++...++++++.|.++.+|.+.|++++|..      ...+++.+++..+...                 .+|    
T Consensus       303 -~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~-----------------~lg----  360 (496)
T PLN02576        303 -RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVK-----------------TLG----  360 (496)
T ss_pred             -cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCc-----------------eEE----
Confidence             235566788999999999999999999999976      2234444322110000                 000    


Q ss_pred             eeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHH
Q psy7654         190 VFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIK  269 (373)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~  269 (373)
                                                             ..|.+..++... +++..+++.|+++..+..+..+++++++
T Consensus       361 ---------------------------------------~~~~s~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~s~ee~~  400 (496)
T PLN02576        361 ---------------------------------------TIYSSSLFPDRA-PEGRVLLLNYIGGSRNTGIASASEEELV  400 (496)
T ss_pred             ---------------------------------------EEeecCcCCCCC-CCCCEEEEEEECCCCCcccccCCHHHHH
Confidence                                                   011111221111 2334567789998888888899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCc
Q psy7654         270 TESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQY  349 (373)
Q Consensus       270 ~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~  349 (373)
                      +.++++|++++|.+ ..+.|..+.+++|..      +++.+.+|+..   ..+.+.+.+.+ ...++|+||||++.+.  
T Consensus       401 ~~~~~~L~~~~g~~-~~~~p~~~~~~~w~~------a~P~~~~g~~~---~~~~~~~~l~~-~~~~~l~~aG~~~~g~--  467 (496)
T PLN02576        401 EAVDRDLRKLLLKP-GAPPPKVVGVRVWPK------AIPQYLLGHLD---VLEAAEKMEKD-LGLPGLFLGGNYRGGV--  467 (496)
T ss_pred             HHHHHHHHHHhCCC-CCCCCcEEEEeEcCc------ccCCCCcCHHH---HHHHHHHHHHh-cCCCCEEEeccccCCc--
Confidence            99999999999952 234677788899985      67777777643   23334433321 1114899999999863  


Q ss_pred             chhhHHHHHHHHHHHHHHhhC
Q psy7654         350 GTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       350 g~veGA~~SG~~AA~~i~~~~  370 (373)
                       +|+||++||.+||++|++.+
T Consensus       468 -~i~~ai~sg~~aA~~i~~~~  487 (496)
T PLN02576        468 -ALGKCVESGYEAADLVISYL  487 (496)
T ss_pred             -cHHHHHHHHHHHHHHHHHHH
Confidence             79999999999999998754

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.90  E-value=1.3e-22  Score=205.71  Aligned_cols=267  Identities=16%  Similarity=0.175  Sum_probs=179.5

Q ss_pred             ccCCchhhcchhhhhhhhcc----CCcceeeecCCc-HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-E
Q psy7654          12 DASDSWFETSAKRYNSFVTH----EGCEDTVWKKGG-YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-L   85 (373)
Q Consensus        12 ~~g~~~~~~S~~~~~~~~~~----~g~~~~~~~~gG-~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~   85 (373)
                      ..+.+.+++|+.+++.++..    .+.....+..|| +++|+++|.+.+.     ++|++|++|++|++|...+++++ .
T Consensus       175 ~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~-----~~g~~i~l~~~V~~I~~~~~~~v~~  249 (453)
T TIGR02731       175 LNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYIT-----SRGGEVRLNSRLKEIVLNEDGSVKH  249 (453)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHH-----hcCCEEeCCCeeEEEEECCCCCEEE
Confidence            34667889999998754431    222222233444 6889999998886     56899999999999987334434 3


Q ss_pred             EEeCCCc-----EEEcCEEEEcCCcccccccccccCCCCC-HHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEec
Q psy7654          86 VTCADGS-----QYSADKVLITVSLGVFKSDLITFVPPLP-PQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWT  159 (373)
Q Consensus        86 v~~~~G~-----~~~ad~VIvtiP~~~l~~~~i~f~p~Lp-~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~  159 (373)
                      |.+.+|+     ++.+|+||+|+|++.+.+  + +.+.++ ....+.++++.++++.|+.+.|++++|...  ++  ++.
T Consensus       250 v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~--l-L~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~--~~--~~~  322 (453)
T TIGR02731       250 FVLADGEGQRRFEVTADAYVSAMPVDIFKL--L-LPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD--HL--LFS  322 (453)
T ss_pred             EEEecCCCCceeEEECCEEEEcCCHHHHHh--h-CchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCC--ce--eee
Confidence            5554544     789999999999998876  3 222222 234566778889999999999999987542  22  222


Q ss_pred             CCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeee
Q psy7654         160 HDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFY  239 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~  239 (373)
                      ..+.   +                                     +             +.+        .|...++++.
T Consensus       323 ~~~~---~-------------------------------------~-------------~~~--------~~s~~~~~~~  341 (453)
T TIGR02731       323 RSPL---L-------------------------------------S-------------VYA--------DMSETCKEYA  341 (453)
T ss_pred             CCCc---c-------------------------------------e-------------eec--------chhhhChhhc
Confidence            1110   0                                     0             000        1111122222


Q ss_pred             ecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCcccc
Q psy7654         240 LTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNA  319 (373)
Q Consensus       240 ~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~  319 (373)
                      . ++ . .++++..+. +..+..+++|++++.++++|+++||.......+.++..++|..+||+.  | ...||..   .
T Consensus       342 ~-~~-~-~l~~~~~~~-~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~~---~  411 (453)
T TIGR02731       342 D-PD-K-SMLELVFAP-AADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPGRQ---Q  411 (453)
T ss_pred             C-CC-C-eEEEEEecC-hhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCCCh---h
Confidence            1 22 3 455444433 345678999999999999999999841112257788888999999983  4 2446643   2


Q ss_pred             chHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHH
Q psy7654         320 SRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL  367 (373)
Q Consensus       320 ~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~  367 (373)
                      ..+.+..|++      ||||||++++..++|+||||++||.+||++|.
T Consensus       412 ~~~~~~~p~~------~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~  453 (453)
T TIGR02731       412 YRPHQKTPIP------NFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV  453 (453)
T ss_pred             hCccccCccC------CEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence            4566777776      79999999998889999999999999999873

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02612 phytoene desaturase

Probab=99.89  E-value=7.4e-22  Score=205.50  Aligned_cols=272  Identities=15%  Similarity=0.165  Sum_probs=177.2

Q ss_pred             hccCCchhhcchhhhhhhhc----cCCcceeeecCCcH-HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--
Q psy7654          11 LDASDSWFETSAKRYNSFVT----HEGCEDTVWKKGGY-GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--   83 (373)
Q Consensus        11 ~~~g~~~~~~S~~~~~~~~~----~~g~~~~~~~~gG~-~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--   83 (373)
                      ...+.+.+++|+..++....    ..+...+-+..|+. ++|.++|++.+.     ++|++|++|++|++|.. ++++  
T Consensus       269 ~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~-----~~G~~I~l~~~V~~I~~-~~~g~v  342 (567)
T PLN02612        269 ALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQ-----SLGGEVRLNSRIKKIEL-NDDGTV  342 (567)
T ss_pred             HhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHH-----hcCCEEEeCCeeeEEEE-CCCCcE
Confidence            33466788999998886322    11222333456665 789999999886     67899999999999998 4444  


Q ss_pred             EEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCC
Q psy7654          84 VLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDK  163 (373)
Q Consensus        84 v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~  163 (373)
                      +.|.+.+|+++.+|+||+|+|+.+++.+ +. ....+....+.++++.+.++.+|++.|++++|... ..+  ++..++.
T Consensus       343 ~~v~~~~G~~~~ad~VI~a~p~~~l~~L-l~-~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~-~~~--~~~~~~~  417 (567)
T PLN02612        343 KHFLLTNGSVVEGDVYVSATPVDILKLL-LP-DQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTY-DHL--LFSRSPL  417 (567)
T ss_pred             EEEEECCCcEEECCEEEECCCHHHHHHh-Cc-chhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCC-Cce--eecCCCC
Confidence            3466778888999999999999998862 11 11112234556677889999999999999998642 222  2111110


Q ss_pred             CCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCC
Q psy7654         164 KNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE  243 (373)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~  243 (373)
                         +                                                  .++.|++        ..++.++  ++
T Consensus       418 ---~--------------------------------------------------~~~~d~S--------~~~~~~~--~~  434 (567)
T PLN02612        418 ---L--------------------------------------------------SVYADMS--------TTCKEYY--DP  434 (567)
T ss_pred             ---c--------------------------------------------------eeehhhh--------hcchhhc--CC
Confidence               0                                                  0111211        1111211  22


Q ss_pred             CCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCC--CceEEeccCCCCCccccccccccccCCccccch
Q psy7654         244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE--PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR  321 (373)
Q Consensus       244 ~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~--~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~  321 (373)
                      +. .|+.++.+ .+..+..++++++++.++++|+++||.. ..++  ...+....+...|++  .|.. .||...   ..
T Consensus       435 ~~-~ll~~~~~-~a~~~~~~sdeei~e~vl~~L~~lfp~~-~~~~~~~~~i~~~~~v~~P~a--~~~~-~pg~~~---~r  505 (567)
T PLN02612        435 NK-SMLELVFA-PAEEWISRSDEDIIDATMKELAKLFPDE-ISADQSKAKILKYHVVKTPRS--VYKT-VPNCEP---CR  505 (567)
T ss_pred             CC-eEEEEEEE-cChhhhcCCHHHHHHHHHHHHHHHCCcc-cccccCCceEEEEEEeccCCc--eEEe-CCCCcc---cC
Confidence            23 34433333 4667888999999999999999999952 1122  122333344445553  2332 355432   23


Q ss_pred             HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      +.+..|++      +||||||+++..++|+||||++||++||++|++.++
T Consensus       506 p~~~tPi~------~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~  549 (567)
T PLN02612        506 PLQRSPIE------GFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYE  549 (567)
T ss_pred             ccccCccC------CEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence            44566664      799999999988899999999999999999998765

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.89  E-value=2.4e-21  Score=195.57  Aligned_cols=269  Identities=16%  Similarity=0.206  Sum_probs=181.9

Q ss_pred             hhhhhhhccCCchhhcchhhhhhhhc----------------------cCCcceeeecCCcHHHHHHHHHHhCCCCCCCC
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNSFVT----------------------HEGCEDTVWKKGGYGNVLKLLLKQMPGQTPID   62 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~~~~----------------------~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~   62 (373)
                      +.-.+...++.+.+++|+..++..+.                      ..+. ....++|||++|+++|++.+..     
T Consensus       160 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~l~~~l~~~l~~-----  233 (451)
T PRK11883        160 IEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKG-VFGTLKGGLQSLIEALEEKLPA-----  233 (451)
T ss_pred             HHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCC-ceEeeccHHHHHHHHHHHhCcC-----
Confidence            33444455677899999887542110                      0121 1223599999999999998862     


Q ss_pred             CCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEc
Q psy7654          63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRF  142 (373)
Q Consensus        63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~  142 (373)
                        .+|++|++|++|+. .+++|.|.+.+|+++.||+||+|+|++++..  +.+.    +...++++++.|+++.||++.|
T Consensus       234 --~~i~~~~~V~~i~~-~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~--l~~~----~~~~~~~~~~~~~~~~~v~l~~  304 (451)
T PRK11883        234 --GTIHKGTPVTKIDK-SGDGYEIVLSNGGEIEADAVIVAVPHPVLPS--LFVA----PPAFALFKTIPSTSVATVALAF  304 (451)
T ss_pred             --CeEEeCCEEEEEEE-cCCeEEEEECCCCEEEcCEEEECCCHHHHHH--hccC----hhHHHHHhCCCCCceEEEEEEe
Confidence              17999999999998 7788988888888999999999999999987  4222    2346788999999999999999


Q ss_pred             CCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCccccc
Q psy7654         143 PQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKD  222 (373)
Q Consensus       143 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  222 (373)
                      +++++... .+++++.+.++.. ++                .                    +                 
T Consensus       305 ~~~~~~~~-~~~~~~~~~~~~~-~~----------------~--------------------~-----------------  329 (451)
T PRK11883        305 PESATNLP-DGTGFLVARNSDY-TI----------------T--------------------A-----------------  329 (451)
T ss_pred             ccccCCCC-CceEEEecCCCCC-cE----------------E--------------------E-----------------
Confidence            99863222 2344442211100 00                0                    0                 


Q ss_pred             ccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCc
Q psy7654         223 TAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKH  302 (373)
Q Consensus       223 ~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~  302 (373)
                            ..|.+..++... +.+..++..+.+...+..+..++++++++.++++|++++|.   ..++..+.+++|..   
T Consensus       330 ------~~~~s~~~~~~~-p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~---~~~~~~~~~~rw~~---  396 (451)
T PRK11883        330 ------CTWTSKKWPHTT-PEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGI---TGDPEFTIVQRWKE---  396 (451)
T ss_pred             ------EEeEcCcCCCCC-CCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCC---CCCceEEEEeecCc---
Confidence                  001111111111 22233444444444444466789999999999999999985   24677899999985   


Q ss_pred             cccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654         303 FKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK  368 (373)
Q Consensus       303 ~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~  368 (373)
                         +|+.+.+|+..   ..+.+..++..   .++|||||+++.+   +.|++|++||++||++|++
T Consensus       397 ---a~p~~~~~~~~---~~~~l~~~l~~---~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~~  450 (451)
T PRK11883        397 ---AMPQYGVGHIE---RVAELRAGLPH---YPGLYVAGASFEG---VGLPDCIAQAKRAAARLLA  450 (451)
T ss_pred             ---cCCCCCccHHH---HHHHHHHhhhh---CCCEEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence               67777776532   23444444431   2389999999863   3699999999999999975

>PRK07233 hypothetical protein; Provisional

Probab=99.88  E-value=4.2e-21  Score=192.57  Aligned_cols=275  Identities=18%  Similarity=0.180  Sum_probs=179.8

Q ss_pred             hhhhhhhhccCCchhhcchhhhhhhhccCC-------cceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEE
Q psy7654           4 LGKAQNSLDASDSWFETSAKRYNSFVTHEG-------CEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI   76 (373)
Q Consensus         4 ~~~~~~~~~~g~~~~~~S~~~~~~~~~~~g-------~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I   76 (373)
                      +++..+.-..|.+++++|+..++..+...+       .....+++||+++|+++|++.+.     +.|++|++|++|++|
T Consensus       150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~-----~~g~~v~~~~~V~~i  224 (434)
T PRK07233        150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIE-----ARGGEIRLGTPVTSV  224 (434)
T ss_pred             HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHH-----hcCceEEeCCCeeEE
Confidence            444555566788999999998766443211       11233569999999999999987     567899999999999


Q ss_pred             EecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeE
Q psy7654          77 NWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNF  156 (373)
Q Consensus        77 ~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~  156 (373)
                      +. +++++.+...+++++++|+||+|+|+..+..  +  .|.++....+.++++.|.+..++++.|+++.++    .+..
T Consensus       225 ~~-~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~--l--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~  295 (434)
T PRK07233        225 VI-DGGGVTGVEVDGEEEDFDAVISTAPPPILAR--L--VPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWL  295 (434)
T ss_pred             EE-cCCceEEEEeCCceEECCEEEECCCHHHHHh--h--cCCCcHHHHhhhcccCccceEEEEEEecCCCCC----Ccee
Confidence            98 6777765556777899999999999998876  2  256777777888999999999999999988643    1111


Q ss_pred             EecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeee
Q psy7654         157 FWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY  236 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~  236 (373)
                      .+...+.  |+                .+.                                           .+.+. +
T Consensus       296 ~~~~~~~--~~----------------~~~-------------------------------------------~~~s~-~  313 (434)
T PRK07233        296 NINDPGA--PF----------------GGV-------------------------------------------IEHTN-L  313 (434)
T ss_pred             eecCCCC--Cc----------------ceE-------------------------------------------EEecc-c
Confidence            1111000  00                000                                           00000 0


Q ss_pred             eeeecCCCCceE--EEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccC
Q psy7654         237 GFYLTTEDPLTF--LGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTT  314 (373)
Q Consensus       237 ~~~~~~~~~~~L--~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~  314 (373)
                      .....+++..++  ..|..+...  +..++++++++.++++|+++++. .....+....+.+|   +|+   ++.+.||.
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~p~-~~~~~~~~~~~~r~---~~a---~~~~~~g~  384 (434)
T PRK07233        314 VPPERYGGEHLVYLPKYLPGDHP--LWQMSDEELLDRFLSYLRKMFPD-FDRDDVRAVRISRA---PYA---QPIYEPGY  384 (434)
T ss_pred             CCccccCCceEEEEeeecCCCCh--hhcCCHHHHHHHHHHHHHHhCCC-CChhheeeEEEEEe---ccc---cccccCch
Confidence            000001122232  335444332  45788999999999999999983 22223445444444   454   33445553


Q ss_pred             CccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         315 DKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       315 ~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      ..   ..+.+..|++      +||||||.+...+.++|+||++||.+||++|++.+..
T Consensus       385 ~~---~~~~~~~~~~------~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~  433 (434)
T PRK07233        385 LD---KIPPYDTPIE------GLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN  433 (434)
T ss_pred             hh---cCCCcccCcC------CEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence            21   2344555554      8999999544434468999999999999999987753

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.77  E-value=1.5e-17  Score=166.57  Aligned_cols=271  Identities=17%  Similarity=0.192  Sum_probs=193.4

Q ss_pred             hhhhhhhhccCCchhhcchhhhhh-hh---ccCCcc-----------------eeeecCCcHHHHHHHHHHhCCCCCCCC
Q psy7654           4 LGKAQNSLDASDSWFETSAKRYNS-FV---THEGCE-----------------DTVWKKGGYGNVLKLLLKQMPGQTPID   62 (373)
Q Consensus         4 ~~~~~~~~~~g~~~~~~S~~~~~~-~~---~~~g~~-----------------~~~~~~gG~~~L~~~L~~~l~~~~~~~   62 (373)
                      ++.=..+-+++.+++++|++.... ..   ...|..                 .+...+||+++|+++|++++.      
T Consensus       153 ~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~------  226 (444)
T COG1232         153 FIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE------  226 (444)
T ss_pred             HHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh------
Confidence            333444556688899999993222 11   111222                 233459999999999999997      


Q ss_pred             CCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEc
Q psy7654          63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRF  142 (373)
Q Consensus        63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~  142 (373)
                        .+|+++++|+.|.+ +..++.+.+.+|..++||.||+|+|++.+..    +.+.  ....++++++.+.++..|.+.+
T Consensus       227 --~~i~~~~~V~~i~~-~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~----ll~~--~~~~~~~~~~~~~s~~~vv~~~  297 (444)
T COG1232         227 --AKIRTGTEVTKIDK-KGAGKTIVDVGGEKITADGVISTAPLPELAR----LLGD--EAVSKAAKELQYTSVVTVVVGL  297 (444)
T ss_pred             --hceeecceeeEEEE-cCCccEEEEcCCceEEcceEEEcCCHHHHHH----HcCC--cchhhhhhhccccceEEEEEEe
Confidence              46999999999999 6777888888888899999999999999876    2222  3346688999999999999999


Q ss_pred             CCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCccccc
Q psy7654         143 PQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKD  222 (373)
Q Consensus       143 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  222 (373)
                      +++--....++++++.++++..  +                .                                      
T Consensus       298 ~~~~~~~~~~~~g~~iad~~~~--~----------------~--------------------------------------  321 (444)
T COG1232         298 DEKDNPALPDGYGLLIADDDPY--I----------------L--------------------------------------  321 (444)
T ss_pred             ccccccCCCCceEEEEecCCCc--c----------------e--------------------------------------
Confidence            8862122235566665443320  0                0                                      


Q ss_pred             ccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCc
Q psy7654         223 TAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKH  302 (373)
Q Consensus       223 ~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~  302 (373)
                           ...|.+..++... +.+..++.+++....-+....++|||+++.++++|.++++.   ..+|..+.+.+|..   
T Consensus       322 -----a~~~~S~~~p~~~-p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~---~~~~~~~~v~r~~~---  389 (444)
T COG1232         322 -----AITFHSNKWPHEA-PEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGI---NGDPVFVEVTRWKY---  389 (444)
T ss_pred             -----eEEEecccCCCCC-CCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCc---Ccchhheeeeeccc---
Confidence                 1234444444332 32345777777776666677789999999999999999986   34566899999985   


Q ss_pred             cccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654         303 FKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK  368 (373)
Q Consensus       303 ~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~  368 (373)
                         +++++.+|+..   ....++..+.  +.+++|+.+|.+..+.   ++.+++.+|..||+++++
T Consensus       390 ---~~PqY~vG~~~---~~~~ir~~l~--~~y~gi~~~G~~~~g~---g~~d~I~~g~~aa~~l~~  444 (444)
T COG1232         390 ---AMPQYEVGHLD---RLEPIRAALK--GAYPGIKSVGRYGEGV---GLPDCIAAGKEAAEQLLS  444 (444)
T ss_pred             ---cCCccchhHHH---HHHHHHHhhc--cccCCeEEeccCCCCC---CchHHHHHHHHHHHHhhC
Confidence               89999999754   4555555554  1235899999988763   588899999999998863

>PLN02487 zeta-carotene desaturase

Probab=99.77  E-value=2.6e-17  Score=170.66  Aligned_cols=290  Identities=15%  Similarity=0.107  Sum_probs=179.7

Q ss_pred             hhhhhhhhccCCchhhcchhhhhhhhcc----CCcceeeecCCcHHH-HHHHHHHhCCCCCCCCCCceEEcCCceEEEEe
Q psy7654           4 LGKAQNSLDASDSWFETSAKRYNSFVTH----EGCEDTVWKKGGYGN-VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINW   78 (373)
Q Consensus         4 ~~~~~~~~~~g~~~~~~S~~~~~~~~~~----~g~~~~~~~~gG~~~-L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~   78 (373)
                      ++.-.+....+.+.+++|+..+..-+.+    ....++.+++||++. |++.+++.|.     ++|++|+++++|++|..
T Consensus       249 l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~-----~~Gg~V~l~~~V~~I~~  323 (569)
T PLN02487        249 MWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYIT-----DRGGRFHLRWGCREILY  323 (569)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHH-----HcCCEEEeCCceEEEEE
Confidence            3445556667889999999987753221    111334567999995 9999999998     78999999999999998


Q ss_pred             cC-CCc----EEEEe---CCCcEEEcCEEEEcCCcccccccccccCCCCCH--HHHHHHhcCCCcceeEEEEEcCCCCCC
Q psy7654          79 ED-ANG----VLVTC---ADGSQYSADKVLITVSLGVFKSDLITFVPPLPP--QKKNIIESLFLGTVDKVFVRFPQKWWP  148 (373)
Q Consensus        79 ~~-~~~----v~v~~---~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~--~~~~ai~~~~~~~~~kv~l~~~~~~W~  148 (373)
                      +. +++    +.|.+   .+++++.+|+||+|+|+..+++  +  .|....  .....+.++.+.++..|+|.|+++.= 
T Consensus       324 ~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~--L--lp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~-  398 (569)
T PLN02487        324 DKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR--L--LPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVT-  398 (569)
T ss_pred             ecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH--h--CCchhhccHHHhHHhcCCCeeEEEEEEEeccccc-
Confidence            32 222    23444   2345689999999999998887  2  233322  13567788889999999999998641 


Q ss_pred             CCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCC
Q psy7654         149 DDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG  228 (373)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~  228 (373)
                      .. ...+.  +++     +             ....        .++..|+-.+..            -+.+.|.+    
T Consensus       399 ~~-~~~~~--~r~-----l-------------~~~~--------g~~~~~~~~~~~------------~~f~~di~----  433 (569)
T PLN02487        399 EM-QDLEL--SRQ-----L-------------RRAA--------GLDNLLYSADAD------------FSCFADLA----  433 (569)
T ss_pred             cc-ccccc--ccc-----c-------------cccc--------cccccccccCCC------------cceEeeee----
Confidence            11 11000  000     0             0001        111112100000            00111110    


Q ss_pred             CcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccc
Q psy7654         229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS  308 (373)
Q Consensus       229 ~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~  308 (373)
                        ..+ .-.++. ++....|..++.+.  ..+..++++++++.++++|+++||. .....+....+.+..+     ..|.
T Consensus       434 --l~~-~~~~~~-~~~g~~l~~vis~a--~~~~~~~~~ei~~~~~~~L~~~~p~-~~~~~v~~~~vv~~~~-----at~~  501 (569)
T PLN02487        434 --LTS-PEDYYK-EGEGSLIQAVLTPG--DPYMPLSNDKIVEKVHKQVLELFPS-SRGLEVTWSSVVKIGQ-----SLYR  501 (569)
T ss_pred             --cCC-HHHHcc-cCCceEEEEEEcCC--ccccCCCHHHHHHHHHHHHHHhCcc-cccCceEEEEEEEccC-----ceec
Confidence              000 000111 11124566666653  3577899999999999999999985 2222455555555443     3343


Q ss_pred             cccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         309 IYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       309 ~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                      . .||+..   .++....|+.      |||+|||+++..|+.+||||++||.+||+.|++..
T Consensus       502 ~-~pg~~~---~RP~~~T~~~------nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~  553 (569)
T PLN02487        502 E-APGMDP---FRPDQKTPIS------NFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG  553 (569)
T ss_pred             c-CCCccc---cCCCCCCCCC------CEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            3 466432   2344455554      89999999999999999999999999999998753

>PRK07208 hypothetical protein; Provisional

Probab=99.77  E-value=2e-17  Score=168.90  Aligned_cols=268  Identities=18%  Similarity=0.241  Sum_probs=173.2

Q ss_pred             hhhccCCchhhcchhhhhhhhcc------------------------CC--cceeeecCCcHHHHHHHHHHhCCCCCCCC
Q psy7654           9 NSLDASDSWFETSAKRYNSFVTH------------------------EG--CEDTVWKKGGYGNVLKLLLKQMPGQTPID   62 (373)
Q Consensus         9 ~~~~~g~~~~~~S~~~~~~~~~~------------------------~g--~~~~~~~~gG~~~L~~~L~~~l~~~~~~~   62 (373)
                      +.-.++.+.+++|+.+++.++..                        .+  ...+.+++||+++|+++|++.+.     +
T Consensus       156 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~-----~  230 (479)
T PRK07208        156 TEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLE-----A  230 (479)
T ss_pred             hhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHH-----H
Confidence            44455778999999875432210                        00  01233568999999999999986     5


Q ss_pred             CCceEEcCCceEEEEecCCCcE--EEEe--CCCc--EEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCccee
Q psy7654          63 LGKKLLLNKEVTKINWEDANGV--LVTC--ADGS--QYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVD  136 (373)
Q Consensus        63 ~G~~I~ln~~V~~I~~~~~~~v--~v~~--~~G~--~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~  136 (373)
                      .|++|++|++|++|.. +++++  .++.  .+|+  ++.||+||+|+|+..+..  + +.|.+|....++++++.|.++.
T Consensus       231 ~g~~i~~~~~V~~I~~-~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~--~-l~~~~~~~~~~~~~~l~~~~~~  306 (479)
T PRK07208        231 LGGKVVLNAKVVGLHH-DGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA--A-LDPPPPPEVRAAAAGLRYRDFI  306 (479)
T ss_pred             cCCEEEeCCEEEEEEE-cCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH--h-cCCCCCHHHHHHHhCCCcceeE
Confidence            6799999999999999 55553  2332  2353  588999999999998776  2 3466788888889999999999


Q ss_pred             EEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCC
Q psy7654         137 KVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEK  216 (373)
Q Consensus       137 kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  216 (373)
                      +|.+.|+++.+...  .+.++ +..+.  ++                 +..    .++                      
T Consensus       307 ~v~l~~~~~~~~~~--~~~~~-~~~~~--~~-----------------~r~----~~~----------------------  338 (479)
T PRK07208        307 TVGLLVKELNLFPD--NWIYI-HDPDV--KV-----------------GRL----QNF----------------------  338 (479)
T ss_pred             EEEEEecCCCCCCC--ceEEe-cCCCC--cc-----------------cee----ccc----------------------
Confidence            99999998753321  12222 11010  00                 000    000                      


Q ss_pred             CcccccccccCCCcceeeeeeeeecCCCC-ceEE-EEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEe
Q psy7654         217 NPLFKDTAVVDGAPWIVDLYGFYLTTEDP-LTFL-GWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFH  294 (373)
Q Consensus       217 ~~~~~d~~~~~~~~w~~~~~~~~~~~~~~-~~L~-~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~  294 (373)
                                  ..|...     ..+.+. ..+. .+..... ..+..++++++++.++++|.++ |. ....++....+
T Consensus       339 ------------~~~~~~-----~~p~g~~~~l~~~~~~~~~-~~~~~~~deel~~~~~~~L~~l-~~-~~~~~~~~~~v  398 (479)
T PRK07208        339 ------------NNWSPY-----LVPDGRDTWLGLEYFCFEG-DDLWNMSDEDLIALAIQELARL-GL-IRPADVEDGFV  398 (479)
T ss_pred             ------------ccCCcc-----cCCCCCceEEEEEEEccCC-CccccCCHHHHHHHHHHHHHHc-CC-CChhheeEEEE
Confidence                        011110     012222 2222 2332222 2355789999999999999997 43 12456778888


Q ss_pred             ccCCCCCccccccccccccCCccccchHhhc---ccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654         295 SSWGTNKHFKGSYSIYTLTTDKMNASRHDLE---APLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS  369 (373)
Q Consensus       295 ~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~---~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~  369 (373)
                      .+|..      +|+.+.+|+..   ..+.+.   ++.      ++|++||++.... +.+||+|+.||.+||++|++.
T Consensus       399 ~r~~~------a~P~y~~~~~~---~~~~~~~~~~~~------~~l~laGr~~~~~-~~~~d~a~~sg~~~a~~i~~~  460 (479)
T PRK07208        399 VRVPK------AYPVYDGTYER---NVEIIRDLLDHF------PNLHLVGRNGMHR-YNNQDHSMLTAMLAVENIIAG  460 (479)
T ss_pred             EEecC------cccCCCchHHH---HHHHHHHHHHhc------CCceeeccccccc-cCChhHHHHHHHHHHHHHhcC
Confidence            88863      77777777643   233322   333      4899999986654 469999999999999999764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.76  E-value=4.3e-17  Score=166.57  Aligned_cols=286  Identities=17%  Similarity=0.117  Sum_probs=165.1

Q ss_pred             hhhhhhhccCCchhhcchhhhhh---hhcc-CCcceeeecCCcHHH-HHHHHHHhCCCCCCCCCCceEEcCCceEEEEec
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNS---FVTH-EGCEDTVWKKGGYGN-VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE   79 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~---~~~~-~g~~~~~~~~gG~~~-L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~   79 (373)
                      +.-.+....+.+.+++|++.+..   .+.. .....+.+++||++. +.+.|.+.|.     +.|++|++|++|++|+.+
T Consensus       174 ~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~-----~~Gg~i~~~~~V~~I~~~  248 (474)
T TIGR02732       174 WDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIE-----ARGGKFHLRHKVREIKYE  248 (474)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHH-----HCCCEEECCCEEEEEEEe
Confidence            34445555577899999998744   1111 111233356788776 5555888887     578999999999999983


Q ss_pred             CC-Cc---E-EEEeCCC---cEEEcCEEEEcCCcccccccccccCCCCC--HHHHHHHhcCCCcceeEEEEEcCCCCCCC
Q psy7654          80 DA-NG---V-LVTCADG---SQYSADKVLITVSLGVFKSDLITFVPPLP--PQKKNIIESLFLGTVDKVFVRFPQKWWPD  149 (373)
Q Consensus        80 ~~-~~---v-~v~~~~G---~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp--~~~~~ai~~~~~~~~~kv~l~~~~~~W~~  149 (373)
                      .+ ++   + .|.+.+|   +++.+|+||+|+|++.+.++    .|.++  ......++++.+.++..|+|.|+++.=..
T Consensus       249 ~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L----l~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~  324 (474)
T TIGR02732       249 KSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL----LPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTEL  324 (474)
T ss_pred             cCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh----CChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccc
Confidence            21 22   2 2334333   46899999999999988872    12221  12456788999999999999998753111


Q ss_pred             CCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCC
Q psy7654         150 DIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGA  229 (373)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~  229 (373)
                      . ...      ..+.  +              +..+..+.       .-+..+.            .-+.+.|.+     
T Consensus       325 ~-~~~------~~~~--l--------------~~~~~~~~-------~~~~~~~------------~~~~~~~~~-----  357 (474)
T TIGR02732       325 Q-DLA------KRKQ--L--------------KRAAGLDN-------LLYTADA------------DFSCFADLA-----  357 (474)
T ss_pred             c-chh------hhhc--c--------------cccccccc-------cccccCc------------cceeeehhh-----
Confidence            0 000      0000  0              00000000       0000000            000111100     


Q ss_pred             cceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCcccccccc
Q psy7654         230 PWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSI  309 (373)
Q Consensus       230 ~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~  309 (373)
                       ..+ .-++.. ++...+|.+++...  ..+..++++++++.++++|+++||. ....++.+..+.+..+     ..|. 
T Consensus       358 -~~~-~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~L~~~~p~-~~~~~~~~~~v~~~~~-----a~~~-  425 (474)
T TIGR02732       358 -LTS-PDDYYK-EGQGSLLQCVLTPG--DPWMPESNEEIAKRVDKQVRALFPS-SKNLKLTWSSVVKLAQ-----SLYR-  425 (474)
T ss_pred             -ccC-HHHHhc-cCCCeEEEEEEeCh--hhhcCCCHHHHHHHHHHHHHHhCcc-ccCCceeEEEEEEecC-----ceec-
Confidence             000 000110 12222344555543  3466789999999999999999984 2223455544444443     2222 


Q ss_pred             ccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHH
Q psy7654         310 YTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL  367 (373)
Q Consensus       310 ~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~  367 (373)
                      ..||...   .++....|.      ++||+|||+++..++.+||||++||.+||+.|+
T Consensus       426 ~~pg~~~---~~P~~~t~~------~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~  474 (474)
T TIGR02732       426 EAPGMDP---FRPDQKTPI------SNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL  474 (474)
T ss_pred             cCCCCcc---cCCCCCCCC------CCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence            3466532   223333443      489999999999899999999999999999874

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.72  E-value=2.7e-17  Score=151.54  Aligned_cols=226  Identities=19%  Similarity=0.217  Sum_probs=164.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC-cEEEcCEEEEcCCcccccccccccCCCC
Q psy7654          41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG-SQYSADKVLITVSLGVFKSDLITFVPPL  119 (373)
Q Consensus        41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G-~~~~ad~VIvtiP~~~l~~~~i~f~p~L  119 (373)
                      .-||++|.+.|++.+          +|+++++|++|.+ .++.|++++++| +...+|.||+|+|.+++..++-...-.+
T Consensus       104 ~pgmsalak~LAtdL----------~V~~~~rVt~v~~-~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~  172 (331)
T COG3380         104 EPGMSALAKFLATDL----------TVVLETRVTEVAR-TDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDL  172 (331)
T ss_pred             CcchHHHHHHHhccc----------hhhhhhhhhhhee-cCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccc
Confidence            689999999999987          4999999999999 799999999665 5678999999999998876321112458


Q ss_pred             CHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654         120 PPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW  199 (373)
Q Consensus       120 p~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  199 (373)
                      |...++++..+.|.|+..+.+.|..+-= .+.+| +++  +.+               |                     
T Consensus       173 p~~l~~~~a~V~y~Pc~s~~lg~~q~l~-~P~~G-~~v--dg~---------------~---------------------  212 (331)
T COG3380         173 PAALRAALADVVYAPCWSAVLGYPQPLD-RPWPG-NFV--DGH---------------P---------------------  212 (331)
T ss_pred             hHHHHHhhccceehhHHHHHhcCCccCC-CCCCC-ccc--CCC---------------e---------------------
Confidence            8889999999999999999999987631 11122 111  110               0                     


Q ss_pred             CCCCCCCCccccCCCCCCcccccccccCCCcceeee-eeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHH
Q psy7654         200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDL-YGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRF  278 (373)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~-~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~  278 (373)
                                                   ..|...- ....+.+.+. +++...+.+.++.....++|+.+..+....++
T Consensus       213 -----------------------------laWla~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~  262 (331)
T COG3380         213 -----------------------------LAWLARDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAAQE  262 (331)
T ss_pred             -----------------------------eeeeeccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhhhh
Confidence                                         2343310 0001112233 67778888999998899999999888888999


Q ss_pred             HhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHH
Q psy7654         279 FLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVET  358 (373)
Q Consensus       279 ~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~S  358 (373)
                      +.|.  ..++|.....|+|..      +++.-..+.      ......+..      +||+|||++++   |.||||.+|
T Consensus       263 ~~~~--~~~~p~~s~~H~WrY------A~P~~~~~~------~~L~ad~~~------~l~~cGDwc~G---grVEgA~LS  319 (331)
T COG3380         263 LDGD--RLPEPDWSDAHRWRY------AIPNDAVAG------PPLDADREL------PLYACGDWCAG---GRVEGAVLS  319 (331)
T ss_pred             ccCC--CCCcchHHHhhcccc------ccccccccC------CccccCCCC------ceeeecccccC---cchhHHHhc
Confidence            8884  567888899999983      222222111      111112322      79999999987   789999999


Q ss_pred             HHHHHHHHHhhC
Q psy7654         359 GWREADRILKSD  370 (373)
Q Consensus       359 G~~AA~~i~~~~  370 (373)
                      |..||.+|++.|
T Consensus       320 GlAaA~~i~~~L  331 (331)
T COG3380         320 GLAAADHILNGL  331 (331)
T ss_pred             cHHHHHHHHhcC
Confidence            999999999865

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.46  E-value=1e-11  Score=127.51  Aligned_cols=131  Identities=18%  Similarity=0.134  Sum_probs=93.6

Q ss_pred             hhhhhhhhccCCchhhcchhhhh---hhhcc-CCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec
Q psy7654           4 LGKAQNSLDASDSWFETSAKRYN---SFVTH-EGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE   79 (373)
Q Consensus         4 ~~~~~~~~~~g~~~~~~S~~~~~---~~~~~-~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~   79 (373)
                      ++.+.+...++.+.++.++....   .+... .|.   .+++||+++|+++|++.+.     ++|++|++|++|++|.. 
T Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~~~~GG~~~l~~aL~~~~~-----~~G~~i~~~~~V~~I~~-  260 (492)
T TIGR02733       190 FLDLQLKLYSQEDADETAALYGATVLQMAQAPHGL---WHLHGSMQTLSDRLVEALK-----RDGGNLLTGQRVTAIHT-  260 (492)
T ss_pred             HHHHHHhhhccCChhhhhHHHHHHHhhccccCCCc---eeecCcHHHHHHHHHHHHH-----hcCCEEeCCceEEEEEE-
Confidence            34445554567778888877642   22222 232   2358999999999999997     67899999999999998 


Q ss_pred             CCCcE-EEEeCCC-----cEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcce-eEEEEEcCCC
Q psy7654          80 DANGV-LVTCADG-----SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTV-DKVFVRFPQK  145 (373)
Q Consensus        80 ~~~~v-~v~~~~G-----~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~-~kv~l~~~~~  145 (373)
                      +++++ .|...+|     +++.||+||+|+|+..+..  +...+.+++...+.++++.+.+. .++++.++..
T Consensus       261 ~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~--ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~  331 (492)
T TIGR02733       261 KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE--LLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA  331 (492)
T ss_pred             eCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH--hcCcccCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence            55542 2333232     5789999999999998876  32335677777778888888774 4888999873

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>KOG1276|consensus

Probab=99.41  E-value=3.8e-12  Score=124.23  Aligned_cols=241  Identities=17%  Similarity=0.205  Sum_probs=167.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC--CCc-EEEcCEEEEcCCcccccccccccCC
Q psy7654          41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA--DGS-QYSADKVLITVSLGVFKSDLITFVP  117 (373)
Q Consensus        41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G~-~~~ad~VIvtiP~~~l~~~~i~f~p  117 (373)
                      +||++.|+++|.+.|.     ...+.|.++.++..+.....++|.+++.  ++. .+..+++..|+|..++..    ..+
T Consensus       245 ~gGle~lP~a~~~~L~-----~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~  315 (491)
T KOG1276|consen  245 KGGLETLPKALRKSLG-----EREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLR  315 (491)
T ss_pred             hhhHhHhHHHHHHHhc-----ccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hcc
Confidence            8999999999999997     4447889999999998745566776654  443 356777778999998877    336


Q ss_pred             CCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCC
Q psy7654         118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQK  197 (373)
Q Consensus       118 ~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  197 (373)
                      .+.+....++.++.|.++.-|.+.|..+--.-+..||+.+.+.+ ..++.              -+||+           
T Consensus       316 ~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~-~~~~~--------------~~LG~-----------  369 (491)
T KOG1276|consen  316 GLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSE-PKNGF--------------KTLGT-----------  369 (491)
T ss_pred             ccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCC-CCCCC--------------ceeEE-----------
Confidence            66677788999999999999999999863233468999886532 21111              11332           


Q ss_pred             CCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHH--hhcCCHHHHHHHHHHH
Q psy7654         198 WWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARF--METLSDEQIKTESMKA  275 (373)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~--~~~ls~e~~~~~~~~~  275 (373)
                                                      .|.+.+|+... +  ...++..++|...+.  ....|+|++++.+.++
T Consensus       370 --------------------------------ifdS~~Fp~~~-~--s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~a  414 (491)
T KOG1276|consen  370 --------------------------------IFDSMLFPDRS-P--SPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSA  414 (491)
T ss_pred             --------------------------------EeecccCCCCC-C--CceEEEEecccccccCcCCCCCHHHHHHHHHHH
Confidence                                            12233444322 1  225555555544443  4457999999999999


Q ss_pred             HHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHH
Q psy7654         276 FRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGA  355 (373)
Q Consensus       276 L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA  355 (373)
                      |++++|.   ...|....++-|.+      |++.|.+|+..   ..+.+.+-+.. ....+|+.||.|+.+.   .|..+
T Consensus       415 lq~~Lgi---~~~P~~~~v~l~~~------ciPqy~vGh~~---~le~a~~~l~~-~~g~~l~l~G~~y~Gv---~vgdc  478 (491)
T KOG1276|consen  415 LQKMLGI---SNKPVSVNVHLWKN------CIPQYTVGHDD---VLEAAKSMLTD-SPGLGLFLGGNHYGGV---SVGDC  478 (491)
T ss_pred             HHHHhCC---CCCcccccceehhh------cccceecchHH---HHHHHHHHHHh-CCCCceEeeccccCCC---ChhHH
Confidence            9999997   23477777777876      89999999864   23333333321 0113799999999986   47777


Q ss_pred             HHHHHHHHHHHH
Q psy7654         356 VETGWREADRIL  367 (373)
Q Consensus       356 ~~SG~~AA~~i~  367 (373)
                      +.+|.++|.+++
T Consensus       479 I~sg~~~A~~v~  490 (491)
T KOG1276|consen  479 IESGRKTAVEVI  490 (491)
T ss_pred             HHhhHHHHHhhc
Confidence            788888887765

>TIGR02730 carot_isom carotene isomerase

Probab=99.30  E-value=5.8e-10  Score=114.70  Aligned_cols=131  Identities=19%  Similarity=0.192  Sum_probs=87.1

Q ss_pred             hhhhhhhccCCchhhcchhhhhhhhc--cCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNSFVT--HEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN   82 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~~~~--~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~   82 (373)
                      +.+++.+.+..+..++++...+....  ..|.  ..++.||+..|+++|.+.+.     ++|++|+++++|++|.. +++
T Consensus       189 l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g--~~~~~gG~~~l~~~L~~~~~-----~~G~~i~~~~~V~~I~~-~~~  260 (493)
T TIGR02730       189 IDIECFCWSVVPADQTPMINAGMVFSDRHYGG--INYPKGGVGQIAESLVKGLE-----KHGGQIRYRARVTKIIL-ENG  260 (493)
T ss_pred             HHHHHHhccCCCcccchhhhHHHhhcccccce--EecCCChHHHHHHHHHHHHH-----HCCCEEEeCCeeeEEEe-cCC
Confidence            44455555555556665544333211  1222  23468999999999999997     78999999999999998 444


Q ss_pred             c-EEEEeCCCcEEEcCEEEEcCCcc-cccccccccCCCCCHHHHHHHhcCCCc-ceeEEEEEcCCC
Q psy7654          83 G-VLVTCADGSQYSADKVLITVSLG-VFKSDLITFVPPLPPQKKNIIESLFLG-TVDKVFVRFPQK  145 (373)
Q Consensus        83 ~-v~v~~~~G~~~~ad~VIvtiP~~-~l~~~~i~f~p~Lp~~~~~ai~~~~~~-~~~kv~l~~~~~  145 (373)
                      + +.|.+.+|+++.+|.||+++.+. .+.++ +. ...++......++++.++ +..++++.++..
T Consensus       261 ~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~L-l~-~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~  324 (493)
T TIGR02730       261 KAVGVKLADGEKIYAKRIVSNATRWDTFGKL-LK-AENLPKKEKNWQRNYVKSPSFLSLHLGVKAD  324 (493)
T ss_pred             cEEEEEeCCCCEEEcCEEEECCChHHHHHHh-CC-ccccchhhHHHHhhccCCCceEEEEEEecCc
Confidence            4 56778888889999999988665 44331 21 122444433445666554 478899999874

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.24  E-value=2.9e-10  Score=116.96  Aligned_cols=125  Identities=21%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             hhhhccCCchhhcchhhhh-hhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EE
Q psy7654           8 QNSLDASDSWFETSAKRYN-SFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VL   85 (373)
Q Consensus         8 ~~~~~~g~~~~~~S~~~~~-~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~   85 (373)
                      .+.+.++ +.++.++...+ .+....+..  .+++||+++|+++|.+.+.     ++|++|+++++|++|.. ++++ +.
T Consensus       184 ~~~~~g~-~p~~~~~~~~l~~~~~~~~g~--~~~~gG~~~l~~al~~~~~-----~~G~~i~~~~~V~~i~~-~~~~~~~  254 (502)
T TIGR02734       184 HALFLGG-NPFRTPSIYALISALEREWGV--WFPRGGTGALVAAMAKLAE-----DLGGELRLNAEVIRIET-EGGRATA  254 (502)
T ss_pred             cceeecc-CcccchHHHHHHHHHHhhceE--EEcCCCHHHHHHHHHHHHH-----HCCCEEEECCeEEEEEe-eCCEEEE
Confidence            3334444 44555543322 333333332  2468999999999999887     67899999999999998 5555 57


Q ss_pred             EEeCCCcEEEcCEEEEcCCcccccccccccCCCC-CHHHHHHHhcCCCc-ceeEEEEEcC
Q psy7654          86 VTCADGSQYSADKVLITVSLGVFKSDLITFVPPL-PPQKKNIIESLFLG-TVDKVFVRFP  143 (373)
Q Consensus        86 v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L-p~~~~~ai~~~~~~-~~~kv~l~~~  143 (373)
                      |.+.+|+++.+|+||+|+++..+...++  .+.+ +....+.++++.++ +..++++.++
T Consensus       255 V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~  312 (502)
T TIGR02734       255 VHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSLFVLYFGLL  312 (502)
T ss_pred             EEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCeeeEEEEeec
Confidence            8888888899999999999865543212  2222 32334455666644 5678888888

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.06  E-value=5e-05  Score=78.20  Aligned_cols=86  Identities=22%  Similarity=0.280  Sum_probs=64.2

Q ss_pred             Cchhhcc-hhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcE
Q psy7654          15 DSWFETS-AKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQ   93 (373)
Q Consensus        15 ~~~~~~S-~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~   93 (373)
                      .+..+.+ +..++....+.++  ..+.+|||+.|+++|++.+.     +.|++|+++++|++|..+.+.++.+++.+|+.
T Consensus       195 ~~p~~~~a~~~~~~~~~~~~G--~~~p~GG~~al~~aL~~~~~-----~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~  267 (487)
T COG1233         195 APPSTPPALYLLLSHLGLSGG--VFYPRGGMGALVDALAELAR-----EHGGEIRTGAEVSQILVEGGKGVGVRTSDGEN  267 (487)
T ss_pred             CCCCchhHHHHHHHHhcccCC--eeeeeCCHHHHHHHHHHHHH-----HcCCEEECCCceEEEEEeCCcceEEeccccce
Confidence            3444443 3333344444433  23468999999999999998     78999999999999998333457888888877


Q ss_pred             EEcCEEEEcCCccc
Q psy7654          94 YSADKVLITVSLGV  107 (373)
Q Consensus        94 ~~ad~VIvtiP~~~  107 (373)
                      +++|.||++.-+..
T Consensus       268 ~~ad~vv~~~~~~~  281 (487)
T COG1233         268 IEADAVVSNADPAL  281 (487)
T ss_pred             eccceeEecCchhh
Confidence            89999999998833

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1.4e-05  Score=80.98  Aligned_cols=94  Identities=20%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             hhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEE
Q psy7654         260 METLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLF  339 (373)
Q Consensus       260 ~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~f  339 (373)
                      +..-+++++.....+.+.+.++.  .........+..=      .-+.....||...   +++....|+.      |+++
T Consensus       370 ~~~~~~~~~~a~~e~~~~~~vP~--~~~a~~~~~~i~~------~q~~~~~~pgs~~---~rP~~~Tpv~------N~~l  432 (485)
T COG3349         370 FLFESDEAIVATFEKELYELVPS--LAEAKLKSSVLVN------QQSLYGLAPGSYH---YRPEQKTPIP------NLLL  432 (485)
T ss_pred             ccccchhhHHHHHHHHhhhcCCc--hhcccccccceec------cccccccCCCccc---cCCCCCCCcc------chhh
Confidence            45567888999999999877763  1111111111110      1123334566542   4555666765      7999


Q ss_pred             eccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         340 AGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       340 AGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                      |||++...+.++||||..||.+||+.|++.+
T Consensus       433 aGd~~~~~~~~smE~A~~sGl~AA~~v~~~~  463 (485)
T COG3349         433 AGDYTKQPYLGSMEGATLSGLLAANAILDNL  463 (485)
T ss_pred             ccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence            9999988788999999999999999998654

>KOG4254|consensus

Probab=97.66  E-value=0.0012  Score=65.98  Aligned_cols=83  Identities=23%  Similarity=0.315  Sum_probs=62.9

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCcc-cccccccccC
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLG-VFKSDLITFV  116 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~-~l~~~~i~f~  116 (373)
                      +++|||+.+..++++.+.     +.|++|.+++.|.+|.. ++++ +-|..++|+++.+..||+...++ .+.++ +. .
T Consensus       258 Yp~GG~Gavs~aia~~~~-----~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kL-lp-~  329 (561)
T KOG4254|consen  258 YPRGGMGAVSFAIAEGAK-----RAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKL-LP-G  329 (561)
T ss_pred             CCCCChhHHHHHHHHHHH-----hccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCchHHHHHHh-CC-C
Confidence            469999999999999998     78999999999999998 4454 46888999999998888866555 55441 11 1


Q ss_pred             CCCCHHHHHHHhcCC
Q psy7654         117 PPLPPQKKNIIESLF  131 (373)
Q Consensus       117 p~Lp~~~~~ai~~~~  131 (373)
                      ..||.+.  .++++.
T Consensus       330 e~LPeef--~i~q~d  342 (561)
T KOG4254|consen  330 EALPEEF--VIQQLD  342 (561)
T ss_pred             ccCCchh--hhhhcc
Confidence            2366653  555553

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.65  E-value=0.00028  Score=68.31  Aligned_cols=118  Identities=17%  Similarity=0.195  Sum_probs=89.2

Q ss_pred             cCCchhhcchhhhhhhh---ccCCccee------eecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc
Q psy7654          13 ASDSWFETSAKRYNSFV---THEGCEDT------VWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG   83 (373)
Q Consensus        13 ~g~~~~~~S~~~~~~~~---~~~g~~~~------~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~   83 (373)
                      +..++.++|..-.+.+.   ..-|-..+      -.+.||...-+++|++.+.        ++|.++++|.+|++ -+++
T Consensus       179 wstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~--------~~i~t~~~V~~l~r-lPdG  249 (447)
T COG2907         179 WSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIR--------GRIETRTPVCRLRR-LPDG  249 (447)
T ss_pred             hcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhcccc--------ceeecCCceeeeee-CCCc
Confidence            46677888776555433   32232221      1148999999999999887        68999999999999 8999


Q ss_pred             EEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcC
Q psy7654          84 VLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFP  143 (373)
Q Consensus        84 v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~  143 (373)
                      |.|...+|++.+||+||+|+-+.+.-.  + .+.+-|++ ++.+..+.|.....|+.++.
T Consensus       250 v~l~~~~G~s~rFD~vViAth~dqAl~--m-L~e~sp~e-~qll~a~~Ys~n~aVlhtd~  305 (447)
T COG2907         250 VVLVNADGESRRFDAVVIATHPDQALA--L-LDEPSPEE-RQLLGALRYSANTAVLHTDA  305 (447)
T ss_pred             eEEecCCCCccccceeeeecChHHHHH--h-cCCCCHHH-HHHHHhhhhhhceeEEeecc
Confidence            999988899999999999999987655  2 22333444 56999999998888877755

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.43  E-value=0.00044  Score=70.34  Aligned_cols=62  Identities=19%  Similarity=0.257  Sum_probs=51.7

Q ss_pred             eeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-c-EEEEeCCCcEEEcCEEEEcCC
Q psy7654          37 TVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-G-VLVTCADGSQYSADKVLITVS  104 (373)
Q Consensus        37 ~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~-v~v~~~~G~~~~ad~VIvtiP  104 (373)
                      ..++.||++.|+++|++.+.     ..|+.++++++|++|.. +++ + +.|++.+|+++.|++||+..+
T Consensus       224 ~~yp~gG~g~L~qal~r~~a-----~~Gg~~~L~~~V~~I~~-~~~g~~~~V~~~~Ge~i~a~~VV~~~s  287 (443)
T PTZ00363        224 FIYPLYGLGGLPQAFSRLCA-----IYGGTYMLNTPVDEVVF-DENGKVCGVKSEGGEVAKCKLVICDPS  287 (443)
T ss_pred             ceeeCCCHHHHHHHHHHHHH-----HcCcEEEcCCeEEEEEE-cCCCeEEEEEECCCcEEECCEEEECcc
Confidence            45678999999999998776     67899999999999998 543 3 568888999999999998433

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=97.30  E-value=0.0016  Score=64.68  Aligned_cols=90  Identities=22%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             hhhhhhhccCCchhhcchhhhhhhh-ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEE-EecCCC
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNSFV-THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI-NWEDAN   82 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~~~-~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I-~~~~~~   82 (373)
                      .+..-+.++|-+. +|++..-+--. +.+++.--  ++||..+|.+.|.+.-.        .++ +|++|++| .. .++
T Consensus        90 v~a~tRvNYgQ~~-~i~a~~G~vSla~a~~gl~s--V~GGN~qI~~~ll~~S~--------A~v-l~~~Vt~I~~~-~~~  156 (368)
T PF07156_consen   90 VQAATRVNYGQNV-NIHAFAGLVSLAGATGGLWS--VEGGNWQIFEGLLEASG--------ANV-LNTTVTSITRR-SSD  156 (368)
T ss_pred             HHhheEeeccccc-chhhhhhheeeeeccCCceE--ecCCHHHHHHHHHHHcc--------CcE-ecceeEEEEec-cCC
Confidence            3445566677653 34444332222 22333222  49999999999999754        689 99999999 44 333


Q ss_pred             c---EEEEeCC--Cc-EEEcCEEEEcCCccc
Q psy7654          83 G---VLVTCAD--GS-QYSADKVLITVSLGV  107 (373)
Q Consensus        83 ~---v~v~~~~--G~-~~~ad~VIvtiP~~~  107 (373)
                      +   +.|++.+  +. .-.+|.||+|+|+..
T Consensus       157 ~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~  187 (368)
T PF07156_consen  157 GYSLYEVTYKSSSGTESDEYDIVVIATPLQQ  187 (368)
T ss_pred             CceeEEEEEecCCCCccccCCEEEECCCccc
Confidence            3   4555443  22 235799999999964

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.27  E-value=0.00076  Score=66.59  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             CCcceeeecC-CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCC
Q psy7654          32 EGCEDTVWKK-GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVS  104 (373)
Q Consensus        32 ~g~~~~~~~~-gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP  104 (373)
                      +++.-++|+. ..-++|+++|...++     +.|++|+++++|.+|++ ++.+..|++.+|+++.||.+|+|+-
T Consensus        97 e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-----~~gV~i~~~~~v~~v~~-~~~~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081          97 EEDLGRMFPDSDKASPIVDALLKELE-----ALGVTIRTRSRVSSVEK-DDSGFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             EccCceecCCccchHHHHHHHHHHHH-----HcCcEEEecceEEeEEe-cCceEEEEcCCCCEEEccEEEEecC
Confidence            4555567776 899999999999998     78999999999999999 7788999999998999999999986

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.44  E-value=0.25  Score=48.88  Aligned_cols=57  Identities=21%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     +.|+..+++++|++|+. +++++.|++++|+++.+|.||.|--...
T Consensus       111 ~~l~~~L~~~~~-----~~~~~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        111 WLLNRALEARVA-----ELPNITRFGDEAESVRP-REDEVTVTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHHHHHh-----cCCCcEEECCeeEEEEE-cCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence            567777777765     34444589999999998 7888999888888899999999988764

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.23  E-value=0.51  Score=46.33  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...|.+.|.+.+.     +.| .+|+++++|++|.. +++++.|++.+|+++.+|.||.|-....
T Consensus       105 r~~l~~~L~~~~~-----~~~~~~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       105 NRVLQQALWERLQ-----EYPNVTLLCPARVVELPR-HSDHVELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             cHHHHHHHHHHHH-----hCCCcEEecCCeEEEEEe-cCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence            3567777877775     455 78999999999998 7788889888898899999998877653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.11  E-value=0.54  Score=46.66  Aligned_cols=57  Identities=18%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     +.|.+|+.+++|++|+. +++++.|++.+|+++.+|.||.|.-...
T Consensus       113 ~~l~~~L~~~~~-----~~gv~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        113 DLLVDRLWAALH-----AAGVQLHCPARVVALEQ-DADRVRLRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCeEEEEEe-cCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            567777777775     45789999999999998 7888888888888899999999987764

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=96.10  E-value=0.0072  Score=58.25  Aligned_cols=63  Identities=25%  Similarity=0.368  Sum_probs=52.2

Q ss_pred             ecCCc---HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCcccc
Q psy7654          39 WKKGG---YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        39 ~~~gG---~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ...+|   ..+++++|.+.+.     +.|++|+.+++|++|.. ++++|. |.+.+|+ +.+|+||+|.-++.-
T Consensus       138 ~~~~g~i~~~~l~~~l~~~~~-----~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  138 FPEGGVIDPRRLIQALAAEAQ-----RAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             ETTEEEEEHHHHHHHHHHHHH-----HTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred             ccccccccccchhhhhHHHHH-----Hhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce
Confidence            34677   8999999999886     67899999999999999 888888 9999996 999999999987643

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.78  E-value=0.025  Score=50.46  Aligned_cols=53  Identities=25%  Similarity=0.386  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      +.+-.+.+++..        |.+|+++++|++|++ .+++|.|++.+++++.||+||+|+-.
T Consensus        84 v~~yl~~~~~~~--------~l~i~~~~~V~~v~~-~~~~w~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   84 VLDYLQEYAERF--------GLEIRFNTRVESVRR-DGDGWTVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             HHHHHHHHHHHT--------TGGEETS--EEEEEE-ETTTEEEEETTS-EEEEEEEEE---S
T ss_pred             HHHHHHHHHhhc--------CcccccCCEEEEEEE-eccEEEEEEEecceeeeeeEEEeeec
Confidence            334445555544        367999999999999 77789999999888999999999985

...

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.69  E-value=0.038  Score=54.80  Aligned_cols=57  Identities=21%  Similarity=0.217  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..++.+|++.+.     + |++|+.+++|++|+. ++++|.|.+.+|.++.+|+||+|.-.+..
T Consensus       135 ~~~~~~l~~~~~-----~-G~~i~~~~~V~~i~~-~~~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       135 PQLCRALLAHAG-----I-RLTLHFNTEITSLER-DGEGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             HHHHHHHHhccC-----C-CcEEEeCCEEEEEEE-cCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            788899988876     6 899999999999998 77789999988877999999999888754

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=95.49  E-value=0.018  Score=58.13  Aligned_cols=64  Identities=25%  Similarity=0.427  Sum_probs=44.8

Q ss_pred             eeec-CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          37 TVWK-KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        37 ~~~~-~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+|+ ..--.++++.|.+.+.     ++|++|+++++|.+|.. .+++ +.|.+++++++.||+||+|+--.
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~-----~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vILAtGG~  165 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELK-----RLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVILATGGK  165 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHH-----HHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE----S
T ss_pred             EECCCCCcHHHHHHHHHHHHH-----HcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEEecCCC
Confidence            3444 3458899999999887     78899999999999998 5666 88888777799999999997643

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK10015 oxidoreductase; Provisional

Probab=95.25  E-value=2.5  Score=42.87  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=33.9

Q ss_pred             CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      +.|++|+.+++|+.|.. +++++.....++.++.||.||.|.-..
T Consensus       120 ~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015        120 QAGAQFIPGVRVDALVR-EGNKVTGVQAGDDILEANVVILADGVN  163 (429)
T ss_pred             HcCCEEECCcEEEEEEE-eCCEEEEEEeCCeEEECCEEEEccCcc
Confidence            45789999999999987 566665333344579999999997765

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.23  E-value=3.4  Score=40.86  Aligned_cols=57  Identities=18%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhCCCCCCCCC-CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDL-GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~-G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+-+.|.+.+.     +. |.+++.+++|++|.. .++++.|++.+|+++++|.||.|.-...
T Consensus       112 ~~l~~~L~~~~~-----~~~gv~i~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (391)
T PRK08020        112 RVLQLALWQALE-----AHPNVTLRCPASLQALQR-DDDGWELTLADGEEIQAKLVIGADGANS  169 (391)
T ss_pred             HHHHHHHHHHHH-----cCCCcEEEcCCeeEEEEE-cCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence            345566666554     23 688999999999998 7778888888888899999999988764

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.08  E-value=3.8  Score=40.69  Aligned_cols=60  Identities=27%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             cHHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeC-CCcEEEcCEEEEcCCcccc
Q psy7654          43 GYGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCA-DGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        43 G~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~-~G~~~~ad~VIvtiP~~~l  108 (373)
                      ....|.+.|.+.+.     +.+ .+++.++.|+.|+. +++.+.++.. +|+++.||.||-|=-.+..
T Consensus       102 ~~~~l~~~L~~~~~-----~~~~v~~~~~~~v~~~~~-~~~~v~v~l~~dG~~~~a~llVgADG~~S~  163 (387)
T COG0654         102 PRSDLLNALLEAAR-----ALPNVTLRFGAEVEAVEQ-DGDGVTVTLSFDGETLDADLLVGADGANSA  163 (387)
T ss_pred             EhHHHHHHHHHHHh-----hCCCcEEEcCceEEEEEE-cCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence            46788888888886     344 69999999999999 7888888887 8989999999998876654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.90  E-value=4.1  Score=40.53  Aligned_cols=58  Identities=16%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC-C--cEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD-G--SQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-G--~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+..    .-|.+++++++|++|+. +++++.|+..+ +  .+++||.||.|--...
T Consensus       121 ~~l~~~L~~~~~~----~~~v~i~~~~~v~~v~~-~~~~~~v~~~~~~~~~~i~adlvIgADG~~S  181 (415)
T PRK07364        121 QVLLEALQEFLQS----CPNITWLCPAEVVSVEY-QQDAATVTLEIEGKQQTLQSKLVVAADGARS  181 (415)
T ss_pred             HHHHHHHHHHHhc----CCCcEEEcCCeeEEEEe-cCCeeEEEEccCCcceEEeeeEEEEeCCCCc
Confidence            4577777777652    12478999999999988 77778777653 2  3689999999887654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=94.46  E-value=0.08  Score=53.55  Aligned_cols=60  Identities=23%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCCcE-EEcCEEEEcCCccccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADGSQ-YSADKVLITVSLGVFK  109 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G~~-~~ad~VIvtiP~~~l~  109 (373)
                      +..+..+|++.+.     ..|++|+||++|+.|++ .++ .+.+.+.+|++ ++|+.||.+.......
T Consensus       152 ~~~~t~~l~e~a~-----~~g~~i~ln~eV~~i~~-~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         152 PGELTRALAEEAQ-----ANGVELRLNTEVTGIEK-QSDGVFVLNTSNGEETLEAKFVINAAGLYADP  213 (429)
T ss_pred             HHHHHHHHHHHHH-----HcCCEEEecCeeeEEEE-eCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence            6678888888876     45899999999999999 566 46677888866 9999999999987654

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=94.41  E-value=0.086  Score=53.11  Aligned_cols=60  Identities=23%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...-.+++.|.+.|.     .+|++|++++.|..|.. .++. ..|.+.+|+++.+|+||+|+-.+-
T Consensus       170 D~l~~vvkni~~~l~-----~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         170 DILPKVVKNIREYLE-----SLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             cchHHHHHHHHHHHH-----hcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcch
Confidence            346778888889998     78999999999999999 5554 467788999999999999998763

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=94.11  E-value=0.24  Score=42.81  Aligned_cols=41  Identities=32%  Similarity=0.456  Sum_probs=34.2

Q ss_pred             CceEE-cCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          64 GKKLL-LNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        64 G~~I~-ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      |.+|. ...+|+.|+. .++++.|.+.+|..+.+|+||+|+-.
T Consensus       114 ~i~v~~~~~~V~~i~~-~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRR-DDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEE-cCCcEEEEECCCCEEEeCEEEECCCC
Confidence            34444 6789999999 78889999999999999999999853

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=94.10  E-value=0.15  Score=50.82  Aligned_cols=57  Identities=28%  Similarity=0.429  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...+.++|.+.+.     +.|++|+++++|.+|.. .++++.|.+.+| ++.+|.||+|.....
T Consensus       148 ~~~l~~aL~~~~~-----~~Gv~i~~~~~V~~i~~-~~~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQ-----ARGGEIRLGAEVTALDE-HANGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHH-----hCCCEEEcCCEEEEEEe-cCCeEEEEECCC-EEEeCEEEECCCcch
Confidence            4788999988886     66899999999999998 677788888777 799999999998864

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=93.92  E-value=0.19  Score=50.09  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             eeec-CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC-cEEEcCEEEEcCCccc
Q psy7654          37 TVWK-KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG-SQYSADKVLITVSLGV  107 (373)
Q Consensus        37 ~~~~-~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G-~~~~ad~VIvtiP~~~  107 (373)
                      .+|+ ..--+.++++|...+.     ++|++|+++++|++|+   ++++.|.+.++ .++.||+||+|+--..
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~-----~~gV~i~~~~~V~~i~---~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLA-----EQGVQFHTRHRWIGWQ---GGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHH-----HCCCEEEeCCEEEEEe---CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            4565 6778999999999887     7899999999999993   23577776543 4689999999998643

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=93.50  E-value=0.19  Score=52.07  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCCCCCCCC----CC--ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPID----LG--KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~----~G--~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ...|..+|++.+.     +    .|  ++|+++++|++|+...++.|.|++.+| ++.||+||+|.-.+..
T Consensus       210 ~~~L~~al~~~a~-----~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        210 YQKLSESFVKHAR-----RDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL  274 (497)
T ss_pred             HHHHHHHHHHHHH-----hhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence            4788899988775     4    56  678999999999983355688888887 7999999999987754

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=93.28  E-value=0.2  Score=49.31  Aligned_cols=55  Identities=22%  Similarity=0.233  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     ++|++++.+++|++|.. +++++.|.+.++ ++.+|+||+|+-..
T Consensus       145 ~~~~~~l~~~~~-----~~g~~~~~~~~V~~i~~-~~~~~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       145 EKALRALQELAE-----AHGATVRDGTKVVEIEP-TELLVTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHH-----HcCCEEECCCeEEEEEe-cCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            467777776665     56799999999999998 677788887776 79999999998875

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=93.22  E-value=0.23  Score=47.76  Aligned_cols=58  Identities=24%  Similarity=0.317  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..+++..|++.+.     +.|++|+.+++|++|+. .+++| .|.+.+| ++.||+||+|+-...-
T Consensus       136 p~~l~~~l~~~~~-----~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       136 PRALLKALEKALE-----KLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             hHHHHHHHHHHHH-----HcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence            4888888888776     67899999999999998 66665 4677777 8999999999988654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=93.02  E-value=0.31  Score=48.87  Aligned_cols=56  Identities=27%  Similarity=0.366  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..|.+.|.+.++.       ..++++++|++|+. ++++|.|+..+|+++++|.||.|--....
T Consensus       105 ~~l~~~L~~~~~~-------~~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       105 ADFLDALLKHLPE-------GIASFGKRATQIEE-QAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             HHHHHHHHHhCCC-------ceEEcCCEEEEEEe-cCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            4678888888753       56899999999998 78889999889989999999999877643

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06847 hypothetical protein; Provisional

Probab=92.90  E-value=0.26  Score=48.37  Aligned_cols=57  Identities=28%  Similarity=0.299  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     +.|++|+++++|++|+. +++++.|.+.+|+++.+|.||.|.-...
T Consensus       107 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        107 PALARILADAAR-----AAGADVRLGTTVTAIEQ-DDDGVTVTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHHHHHHHH-----HhCCEEEeCCEEEEEEE-cCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence            456666766664     45689999999999998 7788888888888999999999998764

>TIGR00275 flavoprotein, HI0933 family

Probab=92.88  E-value=0.32  Score=48.78  Aligned_cols=59  Identities=34%  Similarity=0.508  Sum_probs=48.8

Q ss_pred             CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      .....+.+.|.+.+.     +.|++|+++++|++|.. .++.+.|.+ +++++.+|+||+|+....
T Consensus       102 ~~a~~v~~~L~~~l~-----~~gv~i~~~~~V~~i~~-~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       102 DSAADVLDALLNELK-----ELGVEILTNSKVKSIKK-DDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             CCHHHHHHHHHHHHH-----HCCCEEEeCCEEEEEEe-cCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            456889999988886     56799999999999988 677777777 455899999999998754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=92.88  E-value=0.28  Score=48.68  Aligned_cols=56  Identities=27%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..|.+.|.+.+.     +.|++|+++++|++|+. +++++.|++.+|+++.+|.||.|.-..
T Consensus       111 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vI~AdG~~  166 (403)
T PRK07333        111 RVLINALRKRAE-----ALGIDLREATSVTDFET-RDEGVTVTLSDGSVLEARLLVAADGAR  166 (403)
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-cCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence            567777877775     45789999999999998 788888888888889999999998765

>PRK07236 hypothetical protein; Provisional

Probab=92.76  E-value=0.41  Score=47.50  Aligned_cols=57  Identities=18%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      +...|.+.|.+.+..       .+|+++++|++|+. ++++|.|+..+|+++.+|.||.|=-...
T Consensus        98 ~~~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vIgADG~~S  154 (386)
T PRK07236         98 SWNVLYRALRAAFPA-------ERYHLGETLVGFEQ-DGDRVTARFADGRRETADLLVGADGGRS  154 (386)
T ss_pred             CHHHHHHHHHHhCCC-------cEEEcCCEEEEEEe-cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            577888888887753       57999999999998 7888999999999999999999966654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=92.74  E-value=0.36  Score=48.17  Aligned_cols=58  Identities=26%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..+.+.|.+.+.     +.|.+|+.+++|++|+. ++++|.|++.+|+++.+|.||.|--.+..
T Consensus       112 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        112 RVVQDALLERLH-----DSDIGLLANARLEQMRR-SGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             HHHHHHHHHHHh-----cCCCEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            467778877776     45789999999999998 78889998888888999999999887643

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=92.60  E-value=0.28  Score=48.22  Aligned_cols=56  Identities=38%  Similarity=0.531  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..++.++.+.+.     +.|++|+++++|++|.. .++++.|.+.+| ++.+|+||+|+....
T Consensus       149 ~~~~~~~~~~~~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        149 ELAIKAHLRLAR-----EAGAELLFNEPVTAIEA-DGDGVTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHH-----HCCCEEECCCEEEEEEe-eCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence            556666666554     56799999999999998 677888888887 799999999998764

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=92.52  E-value=0.27  Score=50.25  Aligned_cols=55  Identities=25%  Similarity=0.331  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      -..++.+|++.+.     ++|++|+.+++|++|+.  ++.+.|.+.+| ++.||+||+|+-..
T Consensus       182 P~~l~~~L~~~a~-----~~Gv~i~~~t~V~~i~~--~~~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       182 PGLLVRGLRRVAL-----ELGVEIHENTPMTGLEE--GQPAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHH-----HcCCEEECCCeEEEEee--CCceEEEeCCc-EEECCEEEEccccc
Confidence            4577888887765     67899999999999986  34577888777 79999999998654

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=92.50  E-value=0.32  Score=48.56  Aligned_cols=57  Identities=18%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...+.++|++.+.     +.|++|+.+++|++|.. +++++ .|++.++ ++.+|+||+|+....
T Consensus       200 p~~~~~~l~~~~~-----~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAE-----QLGVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHH-----HCCCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            4578888887775     67899999999999998 66665 4666655 799999999999864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=92.48  E-value=0.37  Score=47.50  Aligned_cols=58  Identities=17%  Similarity=0.131  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+..    ..|++++++++|++|.. ++++|.|++.+|+++.||.||.|-..+.
T Consensus       105 ~~l~~~L~~~~~~----~~gv~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       105 ADLGQALLSRLAL----LTNIQLYCPARYKEIIR-NQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHHh----CCCcEEEcCCeEEEEEE-cCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            5678888877752    13689999999999998 7788888888888899999999999874

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=92.45  E-value=0.41  Score=51.35  Aligned_cols=57  Identities=18%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..++++|.+.+.     + |++|+.+++|++|.. .+++|.|.+.+|..+.+|.||+|.-...-
T Consensus       408 ~~l~~aL~~~a~-----~-Gv~i~~~~~V~~i~~-~~~~~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        408 AELCRALLALAG-----Q-QLTIHFGHEVARLER-EDDGWQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             HHHHHHHHHhcc-----c-CcEEEeCCEeeEEEE-eCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence            588888988876     6 899999999999998 67788898888877789999999988753

>PRK07588 hypothetical protein; Provisional

Probab=91.69  E-value=0.57  Score=46.48  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..|.+.|.+.+.      .|++|+++++|++|+. .+++|.|++++|+++.+|.||.|--....
T Consensus       103 ~~l~~~L~~~~~------~~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        103 GDLAAAIYTAID------GQVETIFDDSIATIDE-HRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHHHhhh------cCeEEEeCCEEeEEEE-CCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            456666666553      2578999999999998 78889999999988999999999887643

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=91.59  E-value=0.44  Score=48.20  Aligned_cols=56  Identities=16%  Similarity=0.219  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCC--cEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADG--SQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G--~~~~ad~VIvtiP~~  106 (373)
                      .+|.++|.+.+.     ++|++|+.+++|.+|.. .++++. |.+.++  .++.||+||+|+-.+
T Consensus       263 ~RL~~aL~~~~~-----~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFE-----QLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHH-----HCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            356777887776     67899999999999998 677665 555665  479999999997665

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=91.57  E-value=0.46  Score=49.01  Aligned_cols=59  Identities=20%  Similarity=0.319  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCC--cEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADG--SQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G--~~~~ad~VIvtiP~~~  107 (373)
                      ...+.++|.+.+.     ++|++|+++++|++|+...+++|.|++   .+|  .++.+|+||+|.-.+.
T Consensus       177 p~~l~~aL~~~a~-----~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       177 FGALTKQLLGYLV-----QNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHH-----hCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            4789999988876     568999999999999983334576653   234  3689999999998765

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=91.50  E-value=0.49  Score=47.84  Aligned_cols=61  Identities=13%  Similarity=0.137  Sum_probs=45.7

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC-CCcEE-EEeC-CCcEEEcCEEEEcCCc
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED-ANGVL-VTCA-DGSQYSADKVLITVSL  105 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~-~~~v~-v~~~-~G~~~~ad~VIvtiP~  105 (373)
                      ..++...+++.|.+.+.     ++|++|+++++|++|..+. ++.+. |... ++.++.++.||+|+--
T Consensus       118 ~~~~g~~l~~~L~~~a~-----~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG  181 (432)
T TIGR02485       118 LRGGGKALTNALYSSAE-----RLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG  181 (432)
T ss_pred             ecCCHHHHHHHHHHHHH-----HcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence            34677889999988876     6789999999999998732 34442 3333 3457899999999984

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=91.46  E-value=0.48  Score=48.17  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-----CCcEEEcCEEEEcCCccccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-----DGSQYSADKVLITVSLGVFK  109 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-----~G~~~~ad~VIvtiP~~~l~  109 (373)
                      ++.|.+.|.+.+.+    .-|.++++|+.|+.|+++.++.|.|+..     +..++.+++|+|..--..|.
T Consensus       180 FG~LTr~l~~~l~~----~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~  246 (488)
T PF06039_consen  180 FGALTRQLVEYLQK----QKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP  246 (488)
T ss_pred             HHHHHHHHHHHHHh----CCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence            78899999888864    3468999999999999955566988753     22578999999987776554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=91.43  E-value=0.46  Score=47.46  Aligned_cols=59  Identities=24%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC-----cEEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG-----SQYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G-----~~~~ad~VIvtiP~~~l  108 (373)
                      ...++.+|.+.+.     +.|++|+.+++|++|.. ++++|.+.+.++     .++++|+||+|.-++.-
T Consensus       196 ~~~~~~~l~~~a~-----~~G~~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        196 IHKFTTGLAAACA-----RLGVQFRYGQEVTSIKT-DGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-eCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence            3567777877775     67899999999999998 677776654332     36899999999998753

>PRK09126 hypothetical protein; Provisional

Probab=91.19  E-value=0.65  Score=45.92  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|-+.|.+.+..    ..|++|+.+++|++|+. .++.+.|++++|+++++|.||.|-....
T Consensus       110 ~~l~~~l~~~~~~----~~g~~i~~~~~v~~~~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (392)
T PRK09126        110 HLIRRAAYEAVSQ----QDGIELLTGTRVTAVRT-DDDGAQVTLANGRRLTARLLVAADSRFS  167 (392)
T ss_pred             HHHHHHHHHHHhh----CCCcEEEcCCeEEEEEE-cCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence            3466666666532    35689999999999998 6778888888888999999999998764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=91.09  E-value=0.7  Score=47.89  Aligned_cols=61  Identities=25%  Similarity=0.335  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEE---eCCCc--EEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVT---CADGS--QYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~---~~~G~--~~~ad~VIvtiP~~~l  108 (373)
                      ...|.++|.+.+.+    ..|++|+++++|+.|++..+++|.|.   +.+|+  ++.||+||+|.-.+..
T Consensus       183 ~~~L~~aL~~~l~~----~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~  248 (497)
T PRK13339        183 FGALTRKLAKHLES----HPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI  248 (497)
T ss_pred             HHHHHHHHHHHHHh----CCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence            56788888877742    34789999999999998227778775   34453  6899999999998763

>PRK06753 hypothetical protein; Provisional

Probab=91.05  E-value=0.8  Score=44.97  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..|.+.|.+.+.+       .+|+++++|++|+. +++++.|++++|+++.+|.||-|--....
T Consensus        98 ~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         98 QTLIDIIKSYVKE-------DAIFTGKEVTKIEN-ETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             HHHHHHHHHhCCC-------ceEEECCEEEEEEe-cCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            5677777777753       57999999999998 78889999989989999999999886643

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=90.97  E-value=0.6  Score=48.35  Aligned_cols=60  Identities=27%  Similarity=0.367  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEe---CCCc--EEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTC---ADGS--QYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~---~~G~--~~~ad~VIvtiP~~~l  108 (373)
                      ...|.++|.+.+.     +.| ++|+++++|++|+...++.|.|.+   .+|+  ++.|++||++.-....
T Consensus       182 ~~~l~~aL~~~a~-----~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~  247 (494)
T PRK05257        182 FGALTRQLVGYLQ-----KQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL  247 (494)
T ss_pred             HHHHHHHHHHHHH-----hCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence            5688888988876     456 699999999999983333476654   3353  6899999999888753

>PRK06834 hypothetical protein; Provisional

Probab=90.85  E-value=0.67  Score=47.84  Aligned_cols=57  Identities=23%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|-+.|.+.+.     +.|++|+++++|++|+. ++++|.|+..+|+++++|+||.|.-...
T Consensus       100 ~~le~~L~~~l~-----~~gv~i~~~~~v~~v~~-~~~~v~v~~~~g~~i~a~~vVgADG~~S  156 (488)
T PRK06834        100 NHIERILAEWVG-----ELGVPIYRGREVTGFAQ-DDTGVDVELSDGRTLRAQYLVGCDGGRS  156 (488)
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence            345555666665     45789999999999998 7888888888888899999999987654

>PRK06116 glutathione reductase; Validated

Probab=90.14  E-value=0.73  Score=46.83  Aligned_cols=54  Identities=20%  Similarity=0.361  Sum_probs=42.3

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+|+++++|.+|+. ++++ +.|.+.+|+++.+|.||+++..
T Consensus       209 ~~~~~l~~~L~-----~~GV~i~~~~~V~~i~~-~~~g~~~v~~~~g~~i~~D~Vv~a~G~  263 (450)
T PRK06116        209 DIRETLVEEME-----KKGIRLHTNAVPKAVEK-NADGSLTLTLEDGETLTVDCLIWAIGR  263 (450)
T ss_pred             HHHHHHHHHHH-----HCCcEEECCCEEEEEEE-cCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence            45556666665     56799999999999987 5444 7788778888999999999754

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=90.08  E-value=0.57  Score=46.79  Aligned_cols=83  Identities=12%  Similarity=0.071  Sum_probs=55.5

Q ss_pred             cCCchhhcchhhhhhh---hcc-CCc---ceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE
Q psy7654          13 ASDSWFETSAKRYNSF---VTH-EGC---EDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL   85 (373)
Q Consensus        13 ~g~~~~~~S~~~~~~~---~~~-~g~---~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~   85 (373)
                      +|.+++++++.+...-   ... ++.   ..+..+++|+.+|+++|+++-.        .+|+||+.+..++. .+++|.
T Consensus       159 Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~--------i~v~l~~~~~~~~~-~~~~~~  229 (377)
T TIGR00031       159 WGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPL--------IDVKLNCHINLLKD-KDSQLH  229 (377)
T ss_pred             eCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCC--------CEEEeCCccceeec-ccccee
Confidence            6888999999876420   001 111   1122368999999999998743        57999998888876 455565


Q ss_pred             EEeCCCcEEEcCEEEEcCCcccc
Q psy7654          86 VTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        86 v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      +..  + .+. +.||.|.|+..+
T Consensus       230 ~~~--~-~~~-~~vi~Tg~id~~  248 (377)
T TIGR00031       230 FAN--K-AIR-KPVIYTGLIDQL  248 (377)
T ss_pred             ecc--c-ccc-CcEEEecCchHH
Confidence            532  2 222 789999998764

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK09897 hypothetical protein; Provisional

Probab=90.02  E-value=0.83  Score=47.75  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCC--ceEEcCCceEEEEecCCCcEEEEeCC-CcEEEcCEEEEcCCc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLG--KKLLLNKEVTKINWEDANGVLVTCAD-GSQYSADKVLITVSL  105 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G--~~I~ln~~V~~I~~~~~~~v~v~~~~-G~~~~ad~VIvtiP~  105 (373)
                      ++...+.+.+.+.     +.|  +.++.+++|++|+. .++++.|++.+ |.++.+|+||+|+-.
T Consensus       106 L~~~f~~l~~~a~-----~~G~~V~v~~~~~V~~I~~-~~~g~~V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        106 FRDQFLRLVDQAR-----QQKFAVAVYESCQVTDLQI-TNAGVMLATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHHHHH-----HcCCeEEEEECCEEEEEEE-eCCEEEEEECCCCeEEEcCEEEECCCC
Confidence            4566666666654     344  57889999999998 77889888755 467899999999976

>PRK07190 hypothetical protein; Provisional

Probab=89.74  E-value=0.86  Score=47.07  Aligned_cols=58  Identities=24%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..+-+.|.+.+.     ++|++|+++++|++|+. +++++.++..+|+++.|++||.|.-....
T Consensus       109 ~~le~~L~~~~~-----~~Gv~v~~~~~v~~l~~-~~~~v~v~~~~g~~v~a~~vVgADG~~S~  166 (487)
T PRK07190        109 SYVEKLLDDKLK-----EAGAAVKRNTSVVNIEL-NQAGCLTTLSNGERIQSRYVIGADGSRSF  166 (487)
T ss_pred             HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-cCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence            344444555554     56799999999999998 77888887778888999999999988753

>PRK08163 salicylate hydroxylase; Provisional

Probab=89.69  E-value=0.97  Score=44.77  Aligned_cols=58  Identities=19%  Similarity=0.256  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..|.+.|.+.+.     +.| .+++++++|++|.. +++++.|++.+|+++.+|.||.|.-....
T Consensus       109 ~~l~~~L~~~~~-----~~~~v~~~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        109 ADIHLSLLEAVL-----DHPLVEFRTSTHVVGIEQ-DGDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHHH-----hcCCcEEEeCCEEEEEec-CCCceEEEEcCCCEEecCEEEECCCcChH
Confidence            346666776664     233 68999999999998 77788888888888999999999876643

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=89.27  E-value=0.9  Score=42.74  Aligned_cols=54  Identities=22%  Similarity=0.441  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ..+.+.+.+.+.     +.|.++++ +.|++|+. .++.+.|.+.+|+++.+|+||+|+-.
T Consensus        57 ~~~~~~l~~~~~-----~~gv~~~~-~~v~~v~~-~~~~~~v~~~~~~~~~~d~liiAtG~  110 (300)
T TIGR01292        57 PELMEKMKEQAV-----KFGAEIIY-EEVIKVDL-SDRPFKVKTGDGKEYTAKAVIIATGA  110 (300)
T ss_pred             HHHHHHHHHHHH-----HcCCeEEE-EEEEEEEe-cCCeeEEEeCCCCEEEeCEEEECCCC
Confidence            356666666554     45688988 89999998 77788888888889999999999986

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=89.13  E-value=1.1  Score=44.38  Aligned_cols=53  Identities=23%  Similarity=0.401  Sum_probs=42.2

Q ss_pred             HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      +.+.+.+.+.     +.|.+++++++|++|.. +++++.|.+.+|+++.+|.||+++..
T Consensus       185 ~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~vI~a~G~  237 (377)
T PRK04965        185 VSSRLQHRLT-----EMGVHLLLKSQLQGLEK-TDSGIRATLDSGRSIEVDAVIAAAGL  237 (377)
T ss_pred             HHHHHHHHHH-----hCCCEEEECCeEEEEEc-cCCEEEEEEcCCcEEECCEEEECcCC
Confidence            4444555554     56789999999999998 66677788888889999999999765

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=89.06  E-value=0.95  Score=46.06  Aligned_cols=56  Identities=25%  Similarity=0.326  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     +.|.+++++++|++|+. .++++.+++.+|+++.+|.||+++...
T Consensus       216 ~~~~~~l~~~l~-----~~gI~v~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        216 DEISDALSYHLR-----DSGVTIRHNEEVEKVEG-GDDGVIVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             HHHHHHHHHHHH-----HcCCEEEECCEEEEEEE-eCCeEEEEECCCCEEEeCEEEEeecCC
Confidence            345556666665     55799999999999997 666787877788889999999998754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.93  E-value=1.3  Score=43.82  Aligned_cols=57  Identities=18%  Similarity=0.167  Sum_probs=44.3

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      .|-+.|.+.+.+    ..|.+++++++|++|.. .+++|.|++++|.++.+|.||.|.-...
T Consensus       113 ~l~~~l~~~~~~----~~g~~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        113 DVGQRLFALLDK----APGVTLHCPARVANVER-TQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHHHHHhc----CCCcEEEcCCEEEEEEE-cCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            444555555532    23579999999999988 7888999888888899999999988763

>PRK05868 hypothetical protein; Validated

Probab=88.90  E-value=1.5  Score=43.43  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      .|.+.|.+.+.      .|.+++++++|++|+. ++++|.|+.++|+++++|.||-|=-....
T Consensus       106 ~L~~~l~~~~~------~~v~i~~~~~v~~i~~-~~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        106 DLVELLYGATQ------PSVEYLFDDSISTLQD-DGDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             HHHHHHHHhcc------CCcEEEeCCEEEEEEe-cCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            45555554442      3578999999999988 78889999999989999999988876643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=88.81  E-value=1  Score=45.71  Aligned_cols=55  Identities=25%  Similarity=0.358  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ..+.+.+.+.+.     +.|.+++++++|++|.. .++++.|.+.+|+++.+|.||+|+..
T Consensus       207 ~~~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~D~viva~G~  261 (446)
T TIGR01424       207 DDMRALLARNME-----GRGIRIHPQTSLTSITK-TDDGLKVTLSHGEEIVADVVLFATGR  261 (446)
T ss_pred             HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-cCCeEEEEEcCCcEeecCEEEEeeCC
Confidence            344455555555     56799999999999987 56667777777888999999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=88.51  E-value=1.2  Score=43.88  Aligned_cols=56  Identities=16%  Similarity=0.099  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.| .+++ ++.|++|+. .++++.|++.+|+++.+|.||.|.-...
T Consensus       111 ~~l~~~L~~~~~-----~~~~v~~~-~~~v~~i~~-~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        111 SLIERALWAALR-----FQPNLTWF-PARAQGLEV-DPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHH-----hCCCcEEE-cceeEEEEe-cCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            467777877775     445 6788 999999988 7788889888888899999999888753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.50  E-value=0.95  Score=46.11  Aligned_cols=55  Identities=29%  Similarity=0.392  Sum_probs=41.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|++|++|++|+. .++++.+.+.+|   +++.+|.||+|+...
T Consensus       214 ~~~~~l~~~l~-----~~gV~i~~~~~V~~i~~-~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~  271 (462)
T PRK06416        214 EISKLAERALK-----KRGIKIKTGAKAKKVEQ-TDDGVTVTLEDGGKEETLEADYVLVAVGRR  271 (462)
T ss_pred             HHHHHHHHHHH-----HcCCEEEeCCEEEEEEE-eCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence            44555555554     56799999999999998 666777776555   578999999997653

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=88.40  E-value=1.2  Score=44.17  Aligned_cols=58  Identities=17%  Similarity=0.148  Sum_probs=45.5

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      .|-..|.+.+..    ..|.+|+++++|++|+. +++++.|+.++|+++++|.||.|--....
T Consensus       111 ~l~~~L~~~~~~----~~~i~i~~~~~v~~~~~-~~~~~~v~~~~g~~~~~~lvIgADG~~S~  168 (384)
T PRK08849        111 LIQLGLWQQFAQ----YPNLTLMCPEKLADLEF-SAEGNRVTLESGAEIEAKWVIGADGANSQ  168 (384)
T ss_pred             HHHHHHHHHHHh----CCCeEEECCCceeEEEE-cCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence            344456555532    22478999999999998 78889999999999999999999888754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=88.31  E-value=1.3  Score=41.44  Aligned_cols=57  Identities=16%  Similarity=0.150  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC-CcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD-GSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-G~~~~ad~VIvtiP~~~  107 (373)
                      ..+-+.|.+.+.     +.|++++++++|++|.. .++++.+...+ +.++++|.||.|.-...
T Consensus        91 ~~l~~~l~~~~~-----~~gv~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        91 DAFDEQLAERAQ-----EAGAELRLGTTVLDVEI-HDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHH-----HcCCEEEeCcEEeeEEE-eCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            345566666654     56789999999999988 67777665443 45799999999998753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.25  E-value=0.98  Score=46.33  Aligned_cols=55  Identities=15%  Similarity=0.085  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCc--eEEcCCceEEEEecCCCcEEEEeCCC--c--EEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGK--KLLLNKEVTKINWEDANGVLVTCADG--S--QYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~--~I~ln~~V~~I~~~~~~~v~v~~~~G--~--~~~ad~VIvtiP~  105 (373)
                      ..+.+-|.+...     ..|.  .|++|++|++|+. .+++|.|++.++  .  +..+|+||+|+-.
T Consensus       111 ~ev~~YL~~~a~-----~fgl~~~I~~~t~V~~V~~-~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~  171 (461)
T PLN02172        111 REVLAYLQDFAR-----EFKIEEMVRFETEVVRVEP-VDGKWRVQSKNSGGFSKDEIFDAVVVCNGH  171 (461)
T ss_pred             HHHHHHHHHHHH-----HcCCcceEEecCEEEEEee-cCCeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence            556666655443     2233  3999999999998 778899887543  2  4579999999885

>PRK08013 oxidoreductase; Provisional

Probab=88.20  E-value=1.4  Score=43.94  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..|-+.|.+.+..    .-|.+|+++++|++|+. +++++.|+..+|+++++|.||-|=-.+..
T Consensus       111 ~~l~~~L~~~~~~----~~~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~a~lvVgADG~~S~  169 (400)
T PRK08013        111 SVIHYALWQKAQQ----SSDITLLAPAELQQVAW-GENEAFLTLKDGSMLTARLVVGADGANSW  169 (400)
T ss_pred             HHHHHHHHHHHhc----CCCcEEEcCCeeEEEEe-cCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence            4566667666642    12578999999999998 77889888888989999999998887643

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=88.14  E-value=1.2  Score=46.25  Aligned_cols=57  Identities=18%  Similarity=0.216  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ...+.+.|.+++.     +.|.+++++++|++|.. .++.+.|++.+|+++.+|++|+|+-..
T Consensus       266 ~~~l~~~l~~~l~-----~~gv~i~~~~~V~~I~~-~~~~~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       266 GSQLAANLEEHIK-----QYPIDLMENQRAKKIET-EDGLIVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             HHHHHHHHHHHHH-----HhCCeEEcCCEEEEEEe-cCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            3456777777765     45789999999999998 677788888888889999999999874

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02507 glutathione reductase

Probab=88.10  E-value=1.3  Score=45.97  Aligned_cols=56  Identities=18%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|++++.|++|+. .++++.|.+.+|+++.+|.||+++...
T Consensus       244 ~~~~~~l~~~l~-----~~GI~i~~~~~V~~i~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~  299 (499)
T PLN02507        244 DEMRAVVARNLE-----GRGINLHPRTNLTQLTK-TEGGIKVITDHGEEFVADVVLFATGRA  299 (499)
T ss_pred             HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-eCCeEEEEECCCcEEEcCEEEEeecCC
Confidence            344455555554     56799999999999987 566777877788889999999997653

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=88.04  E-value=1.3  Score=46.02  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+|.+.|.+++.     +.|.+++++++|++|.. .++.+.|.+.+|+++.+|.||+|+-..
T Consensus       266 ~~l~~~l~~~~~-----~~gv~i~~~~~V~~I~~-~~~~~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        266 PKLAAALEEHVK-----EYDVDIMNLQRASKLEP-AAGLIEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCCEEEEEEe-cCCeEEEEECCCCEEEcCEEEECCCCC
Confidence            467777777775     56789999999999998 667788888888889999999999884

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=87.91  E-value=1.2  Score=45.19  Aligned_cols=55  Identities=27%  Similarity=0.410  Sum_probs=41.8

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC--cEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG--SQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G--~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+++++++|++|+. .++++.+.+.+|  +++.+|.||+|+...
T Consensus       212 ~~~~~~~~~l~-----~~gi~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~i~~D~vi~a~G~~  268 (461)
T TIGR01350       212 EVSKVVAKALK-----KKGVKILTNTKVTAVEK-NDDQVVYENKGGETETLTGEKVLVAVGRK  268 (461)
T ss_pred             HHHHHHHHHHH-----HcCCEEEeCCEEEEEEE-eCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence            44455555554     55789999999999998 677787776666  478999999998653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=87.88  E-value=1.5  Score=43.81  Aligned_cols=57  Identities=25%  Similarity=0.139  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+..+|++.+.     +.|+++..+++|++|...+++++ .|.+.+| ++.+++||+++-...
T Consensus       183 ~~l~~~l~~~a~-----~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       183 DAVAWGYARGAD-----RRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            456677776665     67899999999999986234554 5777777 799999888766543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=87.72  E-value=1.3  Score=45.13  Aligned_cols=64  Identities=20%  Similarity=0.328  Sum_probs=44.4

Q ss_pred             CcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEc
Q psy7654          33 GCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLIT  102 (373)
Q Consensus        33 g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvt  102 (373)
                      |...++++..|.+.|++++.....     =-|+...||++|.+|....++++. |.+ +|+++.++.||..
T Consensus       220 G~sPfLyP~YG~GELpQ~FcRl~A-----V~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d  284 (438)
T PF00996_consen  220 GKSPFLYPLYGLGELPQAFCRLSA-----VYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD  284 (438)
T ss_dssp             SSSSEEEETT-TTHHHHHHHHHHH-----HTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred             CCCCEEEEccCCccHHHHHHHHhh-----hcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence            334567788999999999986443     346899999999999983344443 554 7889999999963

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=87.52  E-value=1.8  Score=43.18  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.+    ..|.+|+++++|++|+. +++.+.|+..+|+++++|.||.|--...
T Consensus       111 ~~l~~~L~~~~~~----~~~v~v~~~~~v~~i~~-~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        111 RVIQLALLEQVQK----QDNVTLLMPARCQSIAV-GESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             HHHHHHHHHHHhc----CCCeEEEcCCeeEEEEe-eCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            4466677776642    23578999999999998 7788889888998999999999988764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=87.21  E-value=1.5  Score=44.91  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=41.9

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. .++++.|.+.+|+++.+|.||+++..
T Consensus       219 ~~~~~l~~~L~-----~~gV~i~~~~~v~~v~~-~~~~~~v~~~~g~~l~~D~vl~a~G~  272 (466)
T PRK07845        219 DAAEVLEEVFA-----RRGMTVLKRSRAESVER-TGDGVVVTLTDGRTVEGSHALMAVGS  272 (466)
T ss_pred             HHHHHHHHHHH-----HCCcEEEcCCEEEEEEE-eCCEEEEEECCCcEEEecEEEEeecC
Confidence            34444555554     56789999999999987 66778787778888999999998665

>PRK07045 putative monooxygenase; Reviewed

Probab=86.90  E-value=2.1  Score=42.41  Aligned_cols=59  Identities=22%  Similarity=0.338  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--VLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..|.+.|.+.+..    ..|.+|+++++|++|+. ++++  +.|++++|+++.+|.||.|--....
T Consensus       106 ~~l~~~L~~~~~~----~~gv~i~~~~~v~~i~~-~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        106 EQLRRLLLAKLDG----LPNVRLRFETSIERIER-DADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             HHHHHHHHHHHhc----CCCeeEEeCCEEEEEEE-CCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            4566777777642    23579999999999998 4444  4678888889999999998887753

>PRK06184 hypothetical protein; Provisional

Probab=86.55  E-value=1.6  Score=45.00  Aligned_cols=56  Identities=20%  Similarity=0.271  Sum_probs=42.8

Q ss_pred             HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCCcEEEcCEEEEcCCcccc
Q psy7654          47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G~~~~ad~VIvtiP~~~l  108 (373)
                      +-+.|.+.+.     +.|++|+++++|++|+. ++++|.++.   .+++++++|+||.|.-....
T Consensus       111 le~~L~~~l~-----~~gv~i~~~~~v~~i~~-~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        111 TERILRERLA-----ELGHRVEFGCELVGFEQ-DADGVTARVAGPAGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             HHHHHHHHHH-----HCCCEEEeCcEEEEEEE-cCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence            4445555554     44689999999999998 777777765   45668999999999887753

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=85.96  E-value=1.5  Score=42.95  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...++.+|++.+..    ..|++|+.+++|++|+. .    .|.+.+| ++.||+||+|+-...
T Consensus       144 p~~~~~~l~~~~~~----~~Gv~i~~~t~V~~i~~-~----~v~t~~g-~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       144 PREAIPALAAYLAE----QHGVEFHWNTAVTSVET-G----TVRTSRG-DVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHHh----cCCCEEEeCCeEEEEec-C----eEEeCCC-cEEeCEEEECCCCCh
Confidence            35677778776641    23799999999999975 3    5677777 578999999998865

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=85.94  E-value=2  Score=43.56  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=34.9

Q ss_pred             CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      +.|++|+.+++|++|.. .++++.+...+|.++.|+.||.|.-.+
T Consensus       120 ~~Gv~i~~~~~V~~i~~-~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        120 EAGAQLITGIRVDNLVQ-RDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             HCCCEEECCCEEEEEEE-eCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            55799999999999988 566664444466689999999998664

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=85.70  E-value=1.9  Score=43.68  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=44.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEE-EeCCC--cEEEcCEEEEcCCc
Q psy7654          41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLV-TCADG--SQYSADKVLITVSL  105 (373)
Q Consensus        41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v-~~~~G--~~~~ad~VIvtiP~  105 (373)
                      ..|+ .|.+.|.+.+.     +.|++|+.+++|+++.. .++++.+ .+.+|  .++.+|.||+|+-.
T Consensus       256 lpG~-rL~~aL~~~l~-----~~Gv~I~~g~~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGr  316 (422)
T PRK05329        256 VPGL-RLQNALRRAFE-----RLGGRIMPGDEVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGS  316 (422)
T ss_pred             CchH-HHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence            4565 68888888886     56899999999999998 5666653 34444  35799999999775

>PLN02463 lycopene beta cyclase

Probab=85.50  E-value=2.4  Score=43.37  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..|-+.|.+++.     +.|++++ +.+|++|+. .++++.|++.+|+++.||.||.|.-..
T Consensus       114 ~~L~~~Ll~~~~-----~~GV~~~-~~~V~~I~~-~~~~~~V~~~dG~~i~A~lVI~AdG~~  168 (447)
T PLN02463        114 KKLKSKMLERCI-----ANGVQFH-QAKVKKVVH-EESKSLVVCDDGVKIQASLVLDATGFS  168 (447)
T ss_pred             HHHHHHHHHHHh-----hcCCEEE-eeEEEEEEE-cCCeEEEEECCCCEEEcCEEEECcCCC
Confidence            345566666664     4467775 679999998 788889999999899999999999765

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=85.41  E-value=0.95  Score=34.23  Aligned_cols=41  Identities=32%  Similarity=0.429  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG   91 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G   91 (373)
                      ..+.+.+.+.+.     +.|.+|++|+.|++|.. +++++.|++++|
T Consensus        40 ~~~~~~~~~~l~-----~~gV~v~~~~~v~~i~~-~~~~~~V~~~~g   80 (80)
T PF00070_consen   40 PDAAKILEEYLR-----KRGVEVHTNTKVKEIEK-DGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHHHHHHHH-----HTTEEEEESEEEEEEEE-ETTSEEEEEETS
T ss_pred             HHHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-eCCEEEEEEecC
Confidence            444555555554     45799999999999999 666677877765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06996 hypothetical protein; Provisional

Probab=85.29  E-value=2.1  Score=42.63  Aligned_cols=54  Identities=15%  Similarity=0.168  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcCC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITVS  104 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvtiP  104 (373)
                      ..|-+.|.+.+.     +.|.+++++++|++|+. ++++|.++..++   +++++|.||-|--
T Consensus       115 ~~l~~~L~~~~~-----~~g~~~~~~~~v~~~~~-~~~~v~v~~~~~~g~~~i~a~lvIgADG  171 (398)
T PRK06996        115 GSLVAALARAVR-----GTPVRWLTSTTAHAPAQ-DADGVTLALGTPQGARTLRARIAVQAEG  171 (398)
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCeeeeeee-cCCeEEEEECCCCcceEEeeeEEEECCC
Confidence            567777877776     55789999999999988 788898887654   5799999999955

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=84.92  E-value=3.1  Score=44.69  Aligned_cols=57  Identities=12%  Similarity=0.134  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      -..|.+.|.+.+..       ..++++++|++|+. .+++|.|++.+|+++.+|.||.|--....
T Consensus       193 R~~L~~~L~~alg~-------~~i~~g~~V~~I~~-~~d~VtV~~~dG~ti~aDlVVGADG~~S~  249 (668)
T PLN02927        193 RMTLQQILARAVGE-------DVIRNESNVVDFED-SGDKVTVVLENGQRYEGDLLVGADGIWSK  249 (668)
T ss_pred             HHHHHHHHHhhCCC-------CEEEcCCEEEEEEE-eCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence            35677888777752       35889999999998 78899999989988999999999887653

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=84.77  E-value=2.1  Score=43.65  Aligned_cols=59  Identities=20%  Similarity=0.319  Sum_probs=44.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe--CCC--cEEEcCEEEEcCCc
Q psy7654          41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC--ADG--SQYSADKVLITVSL  105 (373)
Q Consensus        41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~--~~G--~~~~ad~VIvtiP~  105 (373)
                      .+|...+++.|.+.+.     +.|++|+++++|++|.. ++++|. |.+  .+|  ..+.++.||+|+-.
T Consensus       127 ~g~g~~l~~~l~~~~~-----~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        127 WGGGKALVNALYRSAE-----RLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             cCCHHHHHHHHHHHHH-----HCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            4556778888888776     67899999999999998 566653 433  233  35789999999864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=84.43  E-value=2.5  Score=42.77  Aligned_cols=53  Identities=25%  Similarity=0.380  Sum_probs=40.3

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+++++++|++|.. +++++.+.+.++ ++.+|.||+++..
T Consensus       200 ~~~~~l~~~l~-----~~gV~v~~~~~v~~i~~-~~~~v~v~~~~g-~i~~D~vl~a~G~  252 (441)
T PRK08010        200 DIADNIATILR-----DQGVDIILNAHVERISH-HENQVQVHSEHA-QLAVDALLIASGR  252 (441)
T ss_pred             HHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCEEEEEEcCC-eEEeCEEEEeecC
Confidence            34455555555     56899999999999998 666777776665 6899999999654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=84.40  E-value=2.2  Score=44.22  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC---Cc--EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD---GS--QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~---G~--~~~ad~VIvtiP~~~  107 (373)
                      .+|...++....     ..|++|+.+++|++|.. +++.+.|++.+   |+  ++.++.||.|.-++.
T Consensus       155 ~rl~~~l~~~A~-----~~Ga~i~~~~~V~~i~~-~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        155 ARLVVLNARDAA-----ERGAEILTRTRVVSARR-ENGLWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHH-----HcCCEEEcCcEEEEEEE-eCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            556666665554     56899999999999998 66667666542   43  689999999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=84.14  E-value=2.8  Score=43.03  Aligned_cols=54  Identities=24%  Similarity=0.345  Sum_probs=42.0

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. .++++.+.+.++ ++.+|.||+++...
T Consensus       229 ~~~~~l~~~L~-----~~GV~i~~~~~V~~i~~-~~~~~~v~~~~g-~i~aD~VlvA~G~~  282 (479)
T PRK14727        229 LLGETLTACFE-----KEGIEVLNNTQASLVEH-DDNGFVLTTGHG-ELRAEKLLISTGRH  282 (479)
T ss_pred             HHHHHHHHHHH-----hCCCEEEcCcEEEEEEE-eCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence            44555556665     56799999999999987 666777776665 68999999998875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=84.10  E-value=2.5  Score=43.28  Aligned_cols=54  Identities=41%  Similarity=0.557  Sum_probs=40.8

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc--EEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS--QYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~--~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+++++++|++++. .++++.++.++|+  ++++|+|++|+--
T Consensus       215 ei~~~~~~~l~-----~~gv~i~~~~~v~~~~~-~~~~v~v~~~~g~~~~~~ad~vLvAiGR  270 (454)
T COG1249         215 EISKELTKQLE-----KGGVKILLNTKVTAVEK-KDDGVLVTLEDGEGGTIEADAVLVAIGR  270 (454)
T ss_pred             HHHHHHHHHHH-----hCCeEEEccceEEEEEe-cCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence            34444455554     34578999999999998 6666888887775  6889999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=83.87  E-value=2.4  Score=42.80  Aligned_cols=58  Identities=19%  Similarity=0.177  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc---EEEEeCCCc--EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG---VLVTCADGS--QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~---v~v~~~~G~--~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++|+++++|++|..+.+++   +.+...+++  .+.++.||+|+-...
T Consensus       130 ~~l~~~l~~~~~-----~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~  192 (439)
T TIGR01813       130 AEIVQKLYKKAK-----KEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG  192 (439)
T ss_pred             HHHHHHHHHHHH-----HcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence            468888888776     6789999999999999832343   344444453  367899999987543

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=83.75  E-value=2.8  Score=43.29  Aligned_cols=56  Identities=21%  Similarity=0.314  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ..+.+.+.+.+.     +.|.+|++++.|++|....++...|.+.+|+++.+|.||+++-.
T Consensus       231 ~~~~~~l~~~L~-----~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~  286 (486)
T TIGR01423       231 STLRKELTKQLR-----ANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR  286 (486)
T ss_pred             HHHHHHHHHHHH-----HcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence            456666666675     56799999999999987223335666667778999999997664

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.63  E-value=2.5  Score=43.79  Aligned_cols=57  Identities=12%  Similarity=0.078  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC----cEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG----SQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G----~~~~ad~VIvtiP~~~  107 (373)
                      ..|...++....     +.|++++.+++|++|.. +++.+.|++.++    .++.++.||.|.-++.
T Consensus       155 ~rl~~~l~~~a~-----~~Ga~i~~~~~V~~i~~-~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        155 ARLVVLNALDAA-----ERGATILTRTRCVSARR-EGGLWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHH-----HCCCEEecCcEEEEEEE-cCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            556666665554     67899999999999998 677677765443    2589999999999875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=83.27  E-value=3.4  Score=41.25  Aligned_cols=42  Identities=24%  Similarity=0.391  Sum_probs=35.1

Q ss_pred             CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      +.|.+|+++++|++|..  ++.+.+.+.+|+++.+|.||+++..
T Consensus       198 ~~GV~i~~~~~V~~i~~--~~~~~v~l~~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        198 QAGVRILLNNAIEHVVD--GEKVELTLQSGETLQADVVIYGIGI  239 (396)
T ss_pred             HCCCEEEeCCeeEEEEc--CCEEEEEECCCCEEECCEEEECCCC
Confidence            45789999999999975  4456777788889999999998865

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=83.07  E-value=2.8  Score=42.83  Aligned_cols=55  Identities=36%  Similarity=0.491  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA--DG--SQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G--~~~~ad~VIvtiP~  105 (373)
                      ..+.+.+.+.+.     +.|.+|++|++|++|+. .++++.+...  +|  +++.+|.||+++-.
T Consensus       213 ~~~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~  271 (466)
T PRK07818        213 AEVSKEIAKQYK-----KLGVKILTGTKVESIDD-NGSKVTVTVSKKDGKAQELEADKVLQAIGF  271 (466)
T ss_pred             HHHHHHHHHHHH-----HCCCEEEECCEEEEEEE-eCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence            345556666665     56899999999999987 5666655443  55  36899999999754

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=82.68  E-value=2  Score=42.87  Aligned_cols=59  Identities=22%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE---EE-eCCCc--EEEcCEEEEcCCccc
Q psy7654          43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL---VT-CADGS--QYSADKVLITVSLGV  107 (373)
Q Consensus        43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~---v~-~~~G~--~~~ad~VIvtiP~~~  107 (373)
                      +...+++.|.+.+.     ++|++|+++++|++|.. ++++|.   +. ..+|+  ++.|++||+|+---.
T Consensus       139 ~g~~~~~~l~~~~~-----~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~  203 (417)
T PF00890_consen  139 GGKALIEALAKAAE-----EAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFG  203 (417)
T ss_dssp             HHHHHHHHHHHHHH-----HTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred             cHHHHHHHHHHHHh-----hcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence            67889999999887     67899999999999999 666652   33 13554  468999999987654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=82.68  E-value=3  Score=44.03  Aligned_cols=57  Identities=19%  Similarity=0.243  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCCc-EEEc-CEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADGS-QYSA-DKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G~-~~~a-d~VIvtiP~~~  107 (373)
                      ..|+++|.+.+.     ++|++|+++++|++|.. ++++|   .+...++. ++.+ +.||+|+-...
T Consensus       217 ~~l~~~L~~~a~-----~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        217 NALVARLLKSAE-----DLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            457778887776     67899999999999987 55554   33333442 4678 89999986654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=82.41  E-value=3.1  Score=42.63  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC--C--cEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD--G--SQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~--G--~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. .++++.+...+  |  +++.+|.||+++...
T Consensus       224 ~~~~~~~~~~l~-----~~gi~i~~~~~v~~i~~-~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~  283 (475)
T PRK06327        224 EQVAKEAAKAFT-----KQGLDIHLGVKIGEIKT-GGKGVSVAYTDADGEAQTLEVDKLIVSIGRV  283 (475)
T ss_pred             HHHHHHHHHHHH-----HcCcEEEeCcEEEEEEE-cCCEEEEEEEeCCCceeEEEcCEEEEccCCc
Confidence            445566666665     56789999999999998 66666665433  3  468999999998653

>PRK14694 putative mercuric reductase; Provisional

Probab=82.26  E-value=3.5  Score=42.19  Aligned_cols=55  Identities=11%  Similarity=0.265  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.++++++.|++|+. +++.+.+.+.++ ++.+|.||+|+...
T Consensus       218 ~~~~~~l~~~l~-----~~GI~v~~~~~v~~i~~-~~~~~~v~~~~~-~i~~D~vi~a~G~~  272 (468)
T PRK14694        218 PAVGEAIEAAFR-----REGIEVLKQTQASEVDY-NGREFILETNAG-TLRAEQLLVATGRT  272 (468)
T ss_pred             HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCEEEEEECCC-EEEeCEEEEccCCC
Confidence            445566666665     56799999999999987 666666766554 79999999998653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=82.17  E-value=3.5  Score=42.05  Aligned_cols=55  Identities=11%  Similarity=0.171  Sum_probs=40.5

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCC-cEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADG-SQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G-~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.++++|+.|++|.. +++ .+.+...+| +++.+|.||+++...
T Consensus       208 ~~~~~~~~~l~-----~~gI~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~i~~D~vi~a~G~~  264 (450)
T TIGR01421       208 MISETITEEYE-----KEGINVHKLSKPVKVEK-TVEGKLVIHFEDGKSIDDVDELIWAIGRK  264 (450)
T ss_pred             HHHHHHHHHHH-----HcCCEEEcCCEEEEEEE-eCCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence            34455555555     56789999999999987 443 366776677 568999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=81.98  E-value=4.4  Score=40.03  Aligned_cols=58  Identities=14%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ...|-+.|.+++.     +.+ .+++.+++|++|.. .+++|.|+..++ ++++|.||.|=-....
T Consensus       103 r~~L~~~L~~~~~-----~~~~v~~~~~~~v~~i~~-~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        103 NSDFKKILLSKIT-----NNPLITLIDNNQYQEVIS-HNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             HHHHHHHHHHHHh-----cCCCcEEECCCeEEEEEE-cCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            4667788877775     333 67899999999998 778888888776 8999999998877643

>PRK07846 mycothione reductase; Reviewed

Probab=81.93  E-value=4.2  Score=41.46  Aligned_cols=42  Identities=26%  Similarity=0.352  Sum_probs=35.6

Q ss_pred             CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        64 G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      |.+++++++|++|+. .++++.|.+.+|+++.+|.||+++...
T Consensus       220 ~v~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~~D~vl~a~G~~  261 (451)
T PRK07846        220 RWDVRLGRNVVGVSQ-DGSGVTLRLDDGSTVEADVLLVATGRV  261 (451)
T ss_pred             CeEEEeCCEEEEEEE-cCCEEEEEECCCcEeecCEEEEEECCc
Confidence            578999999999987 666777877788889999999998653

>KOG2820|consensus

Probab=81.86  E-value=2.9  Score=41.01  Aligned_cols=65  Identities=32%  Similarity=0.416  Sum_probs=49.2

Q ss_pred             CCcH---HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec--CCCcEEEEeCCCcEEEcCEEEEcCCcccccc
Q psy7654          41 KGGY---GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE--DANGVLVTCADGSQYSADKVLITVSLGVFKS  110 (373)
Q Consensus        41 ~gG~---~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~--~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~  110 (373)
                      -||+   .+-+++|...+.     .+|+.++.+..|+.++..  ++..+.|.|.+|..+.++.+|+|+-+++.+.
T Consensus       146 ~gGvi~a~kslk~~~~~~~-----~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl  215 (399)
T KOG2820|consen  146 SGGVINAAKSLKALQDKAR-----ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL  215 (399)
T ss_pred             cccEeeHHHHHHHHHHHHH-----HcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence            4663   334445555554     678999999999999853  2445788899998899999999999987654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=81.84  E-value=4.5  Score=39.90  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++++ +++|+.|..+.++.+.|++.+|++++++.||.|.....
T Consensus        85 ~~l~~~l~~~~~-----~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        85 TRLHEELLQKCP-----EGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHH-----hcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            556677777665     4467775 67899998833667888888888899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PTZ00052 thioredoxin reductase; Provisional

Probab=81.68  E-value=3.7  Score=42.53  Aligned_cols=54  Identities=19%  Similarity=0.159  Sum_probs=41.2

Q ss_pred             HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      +.+.+.+.+.     +.|.++++++.|++|+. .++.+.|...+|+++.+|.||+++...
T Consensus       224 ~~~~l~~~l~-----~~GV~i~~~~~v~~v~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~  277 (499)
T PTZ00052        224 CSEKVVEYMK-----EQGTLFLEGVVPINIEK-MDDKIKVLFSDGTTELFDTVLYATGRK  277 (499)
T ss_pred             HHHHHHHHHH-----HcCCEEEcCCeEEEEEE-cCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence            3445555554     55789999999999987 555667777778889999999998764

>PRK06475 salicylate hydroxylase; Provisional

Probab=81.65  E-value=4  Score=40.64  Aligned_cols=60  Identities=17%  Similarity=0.145  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCCcEEEcCEEEEcCCccccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADGSQYSADKVLITVSLGVFK  109 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G~~~~ad~VIvtiP~~~l~  109 (373)
                      ..|.+.|.+.+.+    ..|.+|+++++|++|.. +++++.|+.   .+++++++|.||-|=-....-
T Consensus       107 ~~l~~~L~~~~~~----~~~i~v~~~~~v~~~~~-~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v  169 (400)
T PRK06475        107 ADLQSALLDACRN----NPGIEIKLGAEMTSQRQ-TGNSITATIIRTNSVETVSAAYLIACDGVWSML  169 (400)
T ss_pred             HHHHHHHHHHHHh----cCCcEEEECCEEEEEec-CCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence            5677777776642    22478999999999998 777787765   334578999999998877543

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=80.98  E-value=3.8  Score=42.52  Aligned_cols=58  Identities=14%  Similarity=0.143  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEe---CCCc--EEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTC---ADGS--QYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~---~~G~--~~~ad~VIvtiP~~~  107 (373)
                      -..++.+|++...     +.|++|..+++|++|.. .++++ .|++   .+|+  ++.++.||.|+-++.
T Consensus       127 p~~l~~al~~~A~-----~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       127 PFRLVAANVLDAQ-----EHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             HHHHHHHHHHHHH-----HcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence            4667777777665     67899999999999998 56654 2332   2342  689999999998774

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=80.86  E-value=5.3  Score=39.63  Aligned_cols=56  Identities=30%  Similarity=0.376  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+-+.+.+.+.      .++.+.+++.|++|+. .++.+.|.+.+|++++|+.||-|.++..
T Consensus        87 ~~f~~~l~~~~~------~~~~~~~~~~V~~i~~-~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   87 ADFYEFLLERAA------AGGVIRLNARVTSIEE-TGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHHhh------hCCeEEEccEEEEEEe-cCceEEEEECCCCEEEeeEEEECCCccc
Confidence            455555666553      2367899999999999 7778888999999999999999998644

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR03452 mycothione_red mycothione reductase

Probab=80.57  E-value=5.3  Score=40.75  Aligned_cols=42  Identities=31%  Similarity=0.427  Sum_probs=35.7

Q ss_pred             CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          64 GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        64 G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      |.++++++.|++|+. +++++.|++.+|+++.+|.||+++...
T Consensus       223 gI~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~~D~vl~a~G~~  264 (452)
T TIGR03452       223 KWDIRLGRNVTAVEQ-DGDGVTLTLDDGSTVTADVLLVATGRV  264 (452)
T ss_pred             CCEEEeCCEEEEEEE-cCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence            578999999999997 666777877778889999999999753

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=80.55  E-value=4.2  Score=41.14  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=33.8

Q ss_pred             CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      +.|.+++++++|++|+. +++++.+.. +|+++.+|.||+|+..
T Consensus       210 ~~GI~i~~~~~V~~i~~-~~~~v~v~~-~g~~i~~D~viva~G~  251 (438)
T PRK07251        210 EDGITFLLNAHTTEVKN-DGDQVLVVT-EDETYRFDALLYATGR  251 (438)
T ss_pred             HcCCEEEcCCEEEEEEe-cCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence            45789999999999987 666676655 4568999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	373
1b37_A	472	A 30 Angstrom U-Shaped Catalytic Tunnel In The Crys		3e-19
3kpf_A	478	X-Ray Structure Of The Mutant Lys300met Of Polyamin		1e-18
4gur_A	776	Crystal Structure Of Lsd2-npac With H3 In Space Gro		7e-14
4fwe_A	796	Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup		8e-14
4gu1_A	784	Crystal Structure Of Lsd2 Length = 784		8e-14
4ech_A	516	Yeast Polyamine Oxidase Fms1, H67q Mutant Length =		5e-10
1z6l_A	516	Crystal Structure Of Fms1 In Complex With Its Subst		5e-10
1yy5_A	513	Crystal Structure Of Fms1, A Polyamine Oxidase From		6e-10
4gdp_A	516	Yeast Polyamine Oxidase Fms1, N195a Mutant Length =		6e-10
2x0l_A	734	Crystal Structure Of A Neuro-Specific Splicing Vari		2e-08
2iw5_A	666	Structural Basis For Corest-dependent Demethylation		3e-08
2hko_A	664	Crystal Structure Of Lsd1 Length = 664		3e-08
2h94_A	664	Crystal Structure And Mechanism Of Human Lysine-Spe		3e-08
2ejr_A	662	Lsd1-Tranylcypromine Complex Length = 662		3e-08
2dw4_A	660	Crystal Structure Of Human Lsd1 At 2.3 A Resolution		3e-08
2v1d_A	730	Structural Basis Of Lsd1-Corest Selectivity In Hist		3e-08
2xaf_A	852	Crystal Structure Of Lsd1-Corest In Complex With Pa		3e-08
1rsg_A	516	Crystal Structure Of The Polyamine Oxidase Fms1 Fro		9e-07
3kve_A	486	Structure Of Native L-Amino Acid Oxidase From Viper		2e-06
4e0v_A	497	Structure Of L-Amino Acid Oxidase From The B. Jarar		1e-04
1reo_A	486	L-Amino Acid Oxidase From Agkistrodon Halys Pallas		1e-04
1f8r_A	498	Crystal Structure Of L-Amino Acid Oxidase From Call		3e-04

>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Structure Of Polyamine Oxidase Length = 472

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 78/303 (25%)
Query: 66  KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
           +L LNK V +I +    GV V   D S YSAD V+++ SLGV +SDLI F P LP  K  
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
            I    +    K+F++FP+K+WP+  +G  FF                            
Sbjct: 289 AIYQFDMAVYTKIFLKFPRKFWPEG-KGREFF---------------------------- 319
Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
                        +    RGY   W   +++ P                         D 
Sbjct: 320 ------------LYASSRRGYYGVWQEFEKQYP-------------------------DA 342
Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFR-FFLGANYTIPEPSRVFHSSWGTNKHFK 304
              L  ++   +R +E  SDEQ K E M+  R  F G +  +P+ + +    W +++ +K
Sbjct: 343 NVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKD--VPDATDILVPRWWSDRFYK 400
Query: 305 GSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREAD 364
           G++S + +  ++    +  L AP+        + F GE ++EH  G V+GA  +G   A+
Sbjct: 401 GTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTGEHTSEHYNGYVHGAYLSGIDSAE 452
Query: 365 RIL 367
            ++
Sbjct: 453 ILI 455

>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase From Zea Mays Length = 478

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 78/303 (25%)
Query: 66  KLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKN 125
           +L LNK V +I +    GV V   D S YSAD V+++ SLGV +SDLI F P LP  K  
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
            I    +     +F++FP+K+WP+  +G  FF                            
Sbjct: 289 AIYQFDMAVYTMIFLKFPRKFWPEG-KGREFF---------------------------- 319
Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
                        +    RGY   W   +++ P                         D 
Sbjct: 320 ------------LYASSRRGYYGVWQEFEKQYP-------------------------DA 342
Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFR-FFLGANYTIPEPSRVFHSSWGTNKHFK 304
              L  ++   +R +E  SDEQ K E M+  R  F G +  +P+ + +    W +++ +K
Sbjct: 343 NVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKD--VPDATDILVPRWWSDRFYK 400
Query: 305 GSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREAD 364
           G++S + +  ++    +  L AP+        + F GE ++EH  G V+GA  +G   A+
Sbjct: 401 GTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTGEHTSEHYNGYVHGAYLSGIDSAE 452
Query: 365 RIL 367
            ++
Sbjct: 453 ILI 455

>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21 Length = 776

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 116/305 (38%), Gaps = 76/305 (24%)
Query: 64  GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
           G  + L   V  I++   + V VT  DG+ YSA KVL+TV L + +   I F PPL  +K
Sbjct: 543 GLDIQLKSPVQCIDY-SGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 601
Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
              I                                                     SL 
Sbjct: 602 MKAIN----------------------------------------------------SLG 609
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFW--THDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
            G ++K+ ++FP ++W   V+G +FF        K  LF      D  P           
Sbjct: 610 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF--AVFYDMDP----------- 656
Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
            +     +  I+G +   + TL D+Q+  + M   R        +P+P++ F + W T+ 
Sbjct: 657 QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ-EVPDPTKYFVTRWSTDP 715
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
             + +YS       K   S    +    + QG   + FAGEA+N H   TV GA  +G R
Sbjct: 716 WIQMAYSFV-----KTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVR 768
Query: 362 EADRI 366
           EA +I
Sbjct: 769 EASKI 773

>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of C2221 At 2.13a Length = 796

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 116/305 (38%), Gaps = 76/305 (24%)
Query: 64  GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
           G  + L   V  I++   + V VT  DG+ YSA KVL+TV L + +   I F PPL  +K
Sbjct: 563 GLDIQLKSPVQCIDY-SGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 621
Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
              I                                                     SL 
Sbjct: 622 MKAIN----------------------------------------------------SLG 629
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWT--HDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
            G ++K+ ++FP ++W   V+G +FF        K  LF      D  P           
Sbjct: 630 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF--AVFYDMDP----------- 676
Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
            +     +  I+G +   + TL D+Q+  + M   R        +P+P++ F + W T+ 
Sbjct: 677 QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ-EVPDPTKYFVTRWSTDP 735
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
             + +YS       K   S    +    + QG   + FAGEA+N H   TV GA  +G R
Sbjct: 736 WIQMAYSFV-----KTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVR 788
Query: 362 EADRI 366
           EA +I
Sbjct: 789 EASKI 793

>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2 Length = 784

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 116/305 (38%), Gaps = 76/305 (24%)
Query: 64  GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQK 123
           G  + L   V  I++   + V VT  DG+ YSA KVL+TV L + +   I F PPL  +K
Sbjct: 551 GLDIQLKSPVQCIDY-SGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 609
Query: 124 KNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLF 183
              I                                                     SL 
Sbjct: 610 MKAIN----------------------------------------------------SLG 617
Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFW--THDDEKNPLFKDTAVVDGAPWIVDLYGFYLT 241
            G ++K+ ++FP ++W   V+G +FF        K  LF      D  P           
Sbjct: 618 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLF--AVFYDMDP----------- 664
Query: 242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK 301
            +     +  I+G +   + TL D+Q+  + M   R        +P+P++ F + W T+ 
Sbjct: 665 QKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ-EVPDPTKYFVTRWSTDP 723
Query: 302 HFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWR 361
             + +YS       K   S    +    + QG   + FAGEA+N H   TV GA  +G R
Sbjct: 724 WIQMAYSFV-----KTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVR 776
Query: 362 EADRI 366
           EA +I
Sbjct: 777 EASKI 781

>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant Length = 516

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
           L L+ EV  I  E +  V V C DG+ Y+AD V+ITV   V    +         I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
           PL P  ++  + +  G + KV   F +  W ++           ++   + ++   +D  
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
                    +D +  R   QK           F+ +      L K T V        AP 
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
              +       ED      +      + M+ L  E +  + M+       AN   P    
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
           +  S+W  + + +G+YS      D +     D+   +SNGQ  ++  FAGE +     G 
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
             GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503

>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate Length = 516

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
           L L+ EV  I  E +  V V C DG+ Y+AD V+ITV   V    +         I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
           PL P  ++  + +  G + KV   F +  W ++           ++   + ++   +D  
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
                    +D +  R   QK           F+ +      L K T V        AP 
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
              +       ED      +      + M+ L  E +  + M+       AN   P    
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
           +  S+W  + + +G+YS      D +     D+   +SNGQ  ++  FAGE +     G 
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
             GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503

>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast Length = 513

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
           L L+ EV  I  E +  V V C DG+ Y+AD V+ITV   V    +         I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
           PL P  ++  + +  G + KV   F +  W ++           ++   + ++   +D  
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
                    +D +  R   QK           F+ +      L K T V        AP 
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
              +       ED      +      + M+ L  E +  + M+       AN   P    
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
           +  S+W  + + +G+YS      D +     D+   +SNGQ  ++  FAGE +     G 
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
             GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503

>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant Length = 516

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
           L L+ EV  I  E +  V V C DG+ Y+AD V+ITV   V    +         I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
           PL P  ++  + +  G + KV   F +  W ++           ++   + ++   +D  
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLD-- 334
Query: 178 PWISLFLGTVDKVFVRF-PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVD-----GAPW 231
                    +D +  R   QK           F+ +      L K T V        AP 
Sbjct: 335 --------ELDSMLEREDSQKHTSVTCWSQPLFFVN------LSKSTGVASFMMLMQAPL 380
Query: 232 IVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSR 291
              +       ED      +      + M+ L  E +  + M+       AN   P    
Sbjct: 381 TNHIESI---REDKERLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRN 434
Query: 292 VFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGT 351
           +  S+W  + + +G+YS      D +     D+   +SNGQ  ++  FAGE +     G 
Sbjct: 435 IIVSNWTRDPYSRGAYSACFPGDDPV-----DMVVAMSNGQDSRI-RFAGEHTIMDGAGC 488
Query: 352 VNGAVETGWREADRI 366
             GA E+G REA RI
Sbjct: 489 AYGAWESGRREATRI 503

>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 456 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 514
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 515 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 538
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 539 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 575
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 576 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 624
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 625 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 681
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 682 GEHTIRNYPATVHGALLSGLREAGRI 707

>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 404 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 462
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 463 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 486
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 487 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 523
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 524 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 572
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 573 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 629
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 630 GEHTIRNYPATVHGALLSGLREAGRI 655

>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 403 VPVALAEGLDIKLNTAVRQVQY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654

>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 403 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654

>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 403 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654

>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 403 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 461
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 462 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 485
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 486 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 522
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 523 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 571
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 572 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 628
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 629 GEHTIRNYPATVHGALLSGLREAGRI 654

>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 452 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 510
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 511 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 534
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 535 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 571
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 572 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 620
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 621 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 677
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 678 GEHTIRNYPATVHGALLSGLREAGRI 703

>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 92/326 (28%)
Query: 59  TPIDL--GKKLLLNKEVTKINWEDANG---VLVTCADGSQ---YSADKVLITVSLGVFKS 110
            P+ L  G  + LN  V ++ +  A+G   + V     SQ   Y  D VL T+ LGV K 
Sbjct: 574 VPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ 632
Query: 111 D--LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF 168
               + FVPPLP                        +W    ++   F            
Sbjct: 633 QPPAVQFVPPLP------------------------EWKTSAVQRMGF------------ 656
Query: 169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG 228
                           G ++KV + F + +W   V  +    +    +  LF        
Sbjct: 657 ----------------GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFL------- 693
Query: 229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPE 288
                    F+   + P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+
Sbjct: 694 ---------FWNLYKAPI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQ 742
Query: 289 PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA-PLSNG-------QGKQVLLFA 340
           P     S W  +   +GSYS     +   + + +DL A P++ G       Q    L FA
Sbjct: 743 PKETVVSRWRADPWARGSYSYVAAGS---SGNDYDLMAQPITPGPSIPGAPQPIPRLFFA 799
Query: 341 GEASNEHQYGTVNGAVETGWREADRI 366
           GE +  +   TV+GA+ +G REA RI
Sbjct: 800 GEHTIRNYPATVHGALLSGLREAGRI 825

>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast Length = 516

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVP 117
           L L+ EV  I  E +  V V C DG+ Y+AD V+ITV   V    +         I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
           PL P  ++  + +  G + KV   F +  W ++
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSNE 309

>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera Ammodytes Ammodytes: Stabilization Of The Quaternary Structure By Divalent Ions And Structural Changes In The Dynamic Active Site Length = 486

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 52  LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA----DGSQYSADKVLITVSLGV 107
           + Q+P      + +K+  N  V KI  ++AN V VT      D S  +AD V++  +   
Sbjct: 240 MDQLPTSMYRAIEEKVKFNARVIKIQ-QNANQVTVTYQTPEKDTSSNTADYVIVCTTSRA 298
Query: 108 FKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
            +   I F PPLPP+K++ + S+   +  K+F+    K+W DD
Sbjct: 299 ARR--IQFEPPLPPKKQHALRSVHYRSGTKIFLTCSSKFWEDD 339

>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu Venom Length = 497

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 52  LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQ----YSADKVLITVSLGV 107
           + ++P      + +K+ LN  V KI  +D   V VT     +     +AD V++  +   
Sbjct: 253 MDKLPTSMYQAIQEKVHLNARVIKIQ-QDVKEVTVTYQTSEKETLSVTADYVIVCTTSRA 311
Query: 108 FKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
            +   I F PPLPP+K + + S+   +  K+F+   +K+W DD
Sbjct: 312 ARR--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDD 352

>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas Length = 486

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 52  LKQMPGQTPIDLGKKLLLNKEVTKI--NWEDANGVLVTCA-DGSQYSADKVLITVSLGVF 108
           + ++P      + +K+ LN +V KI  N E    V  T A + +  +AD V++  +    
Sbjct: 240 MDKLPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRAT 299
Query: 109 KSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
           +   I F PPLPP+K + + S+   +  K+F+   +K+W D+
Sbjct: 300 RR--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDE 339

>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From Calloselasma Rhodostoma Complexed With Citrate Length = 498

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 52  LKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLV---TCADGSQYSADKVLITVSLGVF 108
           + ++P     D+  K+  N +V KI   D    +V      +    +AD V++  +    
Sbjct: 240 MDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV 299
Query: 109 KSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDD 150
           +  LI F PPL P+K + + S+   +  K+F+    K+W DD
Sbjct: 300 R--LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDD 339

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	373
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-70
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-59
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	5e-55
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-53
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-53
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-51
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	4e-43
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-36
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	6e-34
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	8e-33
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	3e-12
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-11

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score =  227 bits (579), Expect = 2e-70
 Identities = 82/372 (22%), Positives = 129/372 (34%), Gaps = 79/372 (21%)

Query: 1   MDFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTP 60
           +D+        +        +     +F         V  + GY  V+  L  Q      
Sbjct: 162 VDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDD 221

Query: 61  I---DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVP 117
                +  +L LNK V +I +    GV V   D S YSAD V+++ SLGV +SDLI F P
Sbjct: 222 KSGKIVDPRLQLNKVVREIKY-SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP 280

Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
            LP  K   I    +    K+F++FP+K+WP+      F +                   
Sbjct: 281 KLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSR--------------- 325

Query: 178 PWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYG 237
                                     RGY   W                           
Sbjct: 326 --------------------------RGYYGVW-------------------------QE 334

Query: 238 FYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSW 297
           F     D    L  ++   +R +E  SDEQ K E M+  R        +P+ + +    W
Sbjct: 335 FEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFP-GKDVPDATDILVPRW 393

Query: 298 GTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVE 357
            +++ +KG++S               L AP+        + F GE ++EH  G V+GA  
Sbjct: 394 WSDRFYKGTFS--NWPVGVNRYEYDQLRAPVGR------VYFTGEHTSEHYNGYVHGAYL 445

Query: 358 TGWREADRILKS 369
           +G   A+ ++  
Sbjct: 446 SGIDSAEILINC 457

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score =  200 bits (508), Expect = 1e-59
 Identities = 75/362 (20%), Positives = 126/362 (34%), Gaps = 38/362 (10%)

Query: 16  SWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTK 75
            W     K  ++  T+ G +        Y +V++ + +  P          L L+ EV  
Sbjct: 173 LWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQN-------WLKLSCEVKS 225

Query: 76  INWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDL---------ITFVPPLPPQKKNI 126
           I  E +  V V C DG+ Y+AD V+ITV   V    +         I F PPL P  ++ 
Sbjct: 226 ITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDA 285

Query: 127 IESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGT 186
            + +  G + KV   F +  W ++           ++   + ++   +D        +  
Sbjct: 286 FDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELD----SMLE 341

Query: 187 VDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPL 246
            +          W    +   F           F           I  +       ED  
Sbjct: 342 REDSQKHTSVTCWS---QPLFFVNLSKSTGVASFMMLMQAPLTNHIESI------REDKE 392

Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
               +      + M+ L  E +  + M+       AN   P    +  S+W  + + +G+
Sbjct: 393 RLFSFFQPVLNKIMKCLDSEDV-IDGMRPIENIANANK--PVLRNIIVSNWTRDPYSRGA 449

Query: 307 YSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRI 366
           YS              D+   +SNGQ  + + FAGE +     G   GA E+G REA RI
Sbjct: 450 YSACF-----PGDDPVDMVVAMSNGQDSR-IRFAGEHTIMDGAGCAYGAWESGRREATRI 503

Query: 367 LK 368
             
Sbjct: 504 SD 505

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score =  187 bits (477), Expect = 5e-55
 Identities = 64/353 (18%), Positives = 109/353 (30%), Gaps = 86/353 (24%)

Query: 17  WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76
           W+          ++           GG G V + ++          LG ++ L + V  I
Sbjct: 187 WYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMD--------LLGDRVKLERPVIYI 238

Query: 77  NWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVD 136
           +      VLV   +   Y A  V+  +   +     I F PPLP  +  +I         
Sbjct: 239 DQ-TRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITR------- 288

Query: 137 KVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQ 196
                                                        + LG+V K  V + +
Sbjct: 289 ---------------------------------------------VPLGSVIKCIVYYKE 303

Query: 197 KWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGAS 256
            +W      Y      D E+ P+           + +D         +    +G+I    
Sbjct: 304 PFWRKK--DYCGTMIIDGEEAPVA----------YTLDDTK---PEGNYAAIMGFILAHK 348

Query: 257 ARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDK 316
           AR +  L+ E+   +  + +   LG +    EP      +W   ++  G Y+ Y      
Sbjct: 349 ARKLARLTKEERLKKLCELYAKVLG-SLEALEPVHYEEKNWCEEQYSGGCYTTY-FPPGI 406

Query: 317 MNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
           +      L  P+        + FAG  +  H  G + GAVE G R A  IL +
Sbjct: 407 LTQYGRVLRQPVDR------IYFAGTETATHWSGYMEGAVEAGERAAREILHA 453

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score =  185 bits (471), Expect = 3e-53
 Identities = 74/377 (19%), Positives = 124/377 (32%), Gaps = 94/377 (24%)

Query: 6   KAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGK 65
            A      +      S K ++     E     +  + GY  V   L + +          
Sbjct: 362 FANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD--------- 412

Query: 66  KLLLNKEVTKINWEDANGVLV------TCADGSQYSADKVLITVSLGVFK--SDLITFVP 117
            + LN  V ++ +  A+G  V      + +    Y  D VL T+ LGV K     + FVP
Sbjct: 413 -IKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVP 470

Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
           PLP  K + ++                                                 
Sbjct: 471 PLPEWKTSAVQR------------------------------------------------ 482

Query: 178 PWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYG 237
               +  G ++KV + F + +W   V  +    +                      +L+ 
Sbjct: 483 ----MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTA----------------SRGELFL 522

Query: 238 FYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSW 297
           F+   + P   L  ++G +A  ME +SD+ I    +   +   G +  +P+P     S W
Sbjct: 523 FWNLYKAP-ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFG-SSAVPQPKETVVSRW 580

Query: 298 GTNKHFKGSYSIYTLTT-----DKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTV 352
             +   +GSYS     +     D M        +     Q    L FAGE +  +   TV
Sbjct: 581 RADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATV 640

Query: 353 NGAVETGWREADRILKS 369
           +GA+ +G REA RI   
Sbjct: 641 HGALLSGLREAGRIADQ 657

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score =  181 bits (461), Expect = 3e-53
 Identities = 62/356 (17%), Positives = 111/356 (31%), Gaps = 90/356 (25%)

Query: 14  SDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEV 73
                  SA  ++  V  +   D     GG   V   + +         LG  + LN  V
Sbjct: 185 QAVLMAASAGSFSHLVDEDFILDK-RVIGGMQQVSIRMAE--------ALGDDVFLNAPV 235

Query: 74  TKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLG 133
             + W + +G  V      +  A +V++ V   ++    I++ PPLP ++  + +     
Sbjct: 236 RTVKW-NESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQH---- 288

Query: 134 TVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVR 193
                                                             LG V KV   
Sbjct: 289 ------------------------------------------------QSLGLVIKVHAV 300

Query: 194 FPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWIS 253
           +   +W +D      F   +                  + ++Y      +D  T + ++S
Sbjct: 301 YETPFWREDGLSGTGFGASE-----------------VVQEVYDNTNHEDDRGTLVAFVS 343

Query: 254 GASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLT 313
              A  M  LS E+ K   + +   +LG      EP   + S WG+ +  +G Y+  +  
Sbjct: 344 DEKADAMFELSAEERKATILASLARYLGPK--AEEPVVYYESDWGSEEWTRGCYA-ASFD 400

Query: 314 TDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
              ++    D   P+        + F+        Y  V+GAV  G R A  I+  
Sbjct: 401 LGGLHRYGADSRTPVGP------IHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score =  183 bits (465), Expect = 1e-51
 Identities = 72/369 (19%), Positives = 122/369 (33%), Gaps = 94/369 (25%)

Query: 14  SDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEV 73
           +      S K ++     E     +  + GY  V   L + +           + LN  V
Sbjct: 541 ATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD----------IKLNTAV 590

Query: 74  TKINWEDANGVLV------TCADGSQYSADKVLITVSLGVFK--SDLITFVPPLPPQKKN 125
            ++ +  A+G  V      + +    Y  D VL T+ LGV K     + FVPPLP  K +
Sbjct: 591 RQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTS 649

Query: 126 IIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLG 185
            ++                                                     +  G
Sbjct: 650 AVQR----------------------------------------------------MGFG 657

Query: 186 TVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP 245
            ++KV + F + +W   V  +    +                      +L+ F+   + P
Sbjct: 658 NLNKVVLCFDRVFWDPSVNLFGHVGSTTA----------------SRGELFLFWNLYKAP 701

Query: 246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKG 305
              L  ++G +A  ME +SD+ I    +   +     +  +P+P     S W  +   +G
Sbjct: 702 -ILLALVAGEAAGIMENISDDVIVGRCLAILKGIF-GSSAVPQPKETVVSRWRADPWARG 759

Query: 306 SYSIYTLTT-----DKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGW 360
           SYS     +     D M        +     Q    L FAGE +  +   TV+GA+ +G 
Sbjct: 760 SYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGL 819

Query: 361 READRILKS 369
           REA RI   
Sbjct: 820 REAGRIADQ 828

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score =  155 bits (393), Expect = 4e-43
 Identities = 47/363 (12%), Positives = 95/363 (26%), Gaps = 98/363 (26%)

Query: 7   AQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKK 66
             +S      W+  S   Y        C  +   K G     +   ++  G   +     
Sbjct: 220 ENSSFGEFLHWWAMSGYTYQGC---MDCLMSYKFKDGQSAFARRFWEEAAGTGRLGY--- 273

Query: 67  LLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNI 126
            +    V  +   + +   VT  DG ++ A +V+ T+ L V  +  I F P L  ++ + 
Sbjct: 274 -VFGCPVRSVVN-ERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISA 329

Query: 127 IESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGT 186
           +++  +    KV      K                                         
Sbjct: 330 MQAGHVSMCTKVHAEVDNK-----------DM---------------------------- 350

Query: 187 VDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPL 246
                            R +       ++      D     G   +V    F        
Sbjct: 351 -----------------RSWTGIAYPFNKLCYAIGDGTTPAGNTHLV---CF-------- 382

Query: 247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGS 306
                           +  ++   E++KA               R+   +W  ++  KG+
Sbjct: 383 ----------GNSANHIQPDEDVRETLKAVGQLAPG---TFGVKRLVFHNWVKDEFAKGA 429

Query: 307 YSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRI 366
           +         ++     L            ++FA           ++GA+E G R A  +
Sbjct: 430 WFFSR--PGMVSECLQGLREKHGG------VVFANSDWALGWRSFIDGAIEEGTRAARVV 481

Query: 367 LKS 369
           L+ 
Sbjct: 482 LEE 484

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score =  136 bits (343), Expect = 2e-36
 Identities = 48/349 (13%), Positives = 100/349 (28%), Gaps = 108/349 (30%)

Query: 21  SAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED 80
           +A  Y+        ++      G  +++  + +++P         ++ L   VT I+   
Sbjct: 185 AAHHYSILGVVLSLDEVF--SNGSADLVDAMSQEIP---------EIRLQTVVTGIDQ-S 232

Query: 81  ANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFV 140
            + V VT  DG  + A  V++   +  ++   I F P LP +++++IE            
Sbjct: 233 GDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEE----------- 279

Query: 141 RFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWP 200
                                                       G   K+ +        
Sbjct: 280 -----------------------------------------GHGGQGLKILIHVRGAEAG 298

Query: 201 DDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFM 260
            +  G        D   P   D   V  +  ++                  ++   +   
Sbjct: 299 IECVG--------DGIFPTLYDYCEVSESERLL------------------VAFTDSGSF 332

Query: 261 ETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNAS 320
           +      +K     A  ++L       E   + +  W  +  F+G +    +     +  
Sbjct: 333 DPTDIGAVK----DAVLYYLPE----VEVLGIDYHDWIADPLFEGPWVAPRVGQ--FSRV 382

Query: 321 RHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
             +L  P         + F G   +    G + GA+ET     + IL S
Sbjct: 383 HKELGEPAGR------IHFVGSDVSLEFPGYIEGALETAECAVNAILHS 425

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score =  130 bits (327), Expect = 6e-34
 Identities = 43/331 (12%), Positives = 96/331 (29%), Gaps = 85/331 (25%)

Query: 41  KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS---QYSAD 97
            GG   +      ++           ++   EVT +    + GV V    G      +AD
Sbjct: 235 VGGMDRIYYAFQDRIGTDN-------IVFGAEVTSMKN-VSEGVTVEYTAGGSKKSITAD 286

Query: 98  KVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFF 157
             + T+   +    +      LP      +++    +  K+ + + ++WW  + R Y   
Sbjct: 287 YAICTIPPHL----VGRLQNNLPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGA 342

Query: 158 WTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKN 217
              D                          D   + FP             +  ++ ++ 
Sbjct: 343 SNTDK-------------------------DISQIMFP-------------YDHYNSDRG 364

Query: 218 PLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFR 277
            +                          + +  + SG      E+L+  Q   +++    
Sbjct: 365 VV--------------------------VAY--YSSGKRQEAFESLTHRQRLAKAIAEGS 396

Query: 278 FFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVL 337
              G  Y   + S  F  SW   K+ + +++ +  +      +       L     K  +
Sbjct: 397 EIHGEKY-TRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDK--I 453

Query: 338 LFAGEASNEHQYGTVNGAVETGWREADRILK 368
            FAG+  +       +GA+ +       I +
Sbjct: 454 YFAGDHLSNA-IAWQHGALTSARDVVTHIHE 483

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score =  127 bits (320), Expect = 8e-33
 Identities = 56/381 (14%), Positives = 106/381 (27%), Gaps = 103/381 (27%)

Query: 2   DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPI 61
           D +G   N        F   + +++    +E   D +    G   +   + +        
Sbjct: 201 DMIGDLLNEDSGYYVSF-IESLKHDDIFAYEKRFDEI--VDGMDKLPTAMYRD------- 250

Query: 62  DLGKKLLLNKEVTKINWEDANGVLVTC----ADGSQYSADKVLITVSLGVFKSDLITFVP 117
            +  K+  N +V KI   +   V V       +    +AD V++  +    +   I F P
Sbjct: 251 -IQDKVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNP 306

Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGA 177
           PL P+K + +                                                  
Sbjct: 307 PLLPKKAHALR------------------------------------------------- 317

Query: 178 PWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYG 237
              S+   +  K+F+    K+W DD  G +   +  D               P     Y 
Sbjct: 318 ---SVHYRSGTKIFLTCTTKFWEDD--GIHGGKSTTDL--------------PSRFIYYP 358

Query: 238 FYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFR--FFLGANYTIPEPSRVFHS 295
            +  T      + +  G  A F + L  +               L               
Sbjct: 359 NHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQ 418

Query: 296 SWGTNKHFKGSYSIYT---LTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTV 352
            W  +K+  G  + +T               L A          + FAGE + +  +G +
Sbjct: 419 KWSLDKYAMGGITTFTPYQFQHF-----SDPLTASQGR------IYFAGEYTAQA-HGWI 466

Query: 353 NGAVETGWREADRILKSDPAP 373
           +  +++G R A  +  +   P
Sbjct: 467 DSTIKSGLRAARDVNLASENP 487

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 181

 Score = 63.8 bits (155), Expect = 3e-12
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 249 LGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS 308
             +     A   ++  D +    +++  +   G    +         SW  + +  G  +
Sbjct: 40  AAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEAA 99

Query: 309 IYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK 368
           +Y  T  +M A   D+  P         + FAGE  +   +  + GAVET  R A  + +
Sbjct: 100 VY--TPHQMTAFHLDVVRPEGP------VYFAGEHVSLK-HAWIEGAVETAVRAAIAVNE 150

Query: 369 SDPAP 373
           +    
Sbjct: 151 APVGD 155

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 130

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 89  ADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWP 148
           A    ++ D  ++T+     +   +   PP   +K+  +         KV + F ++WW 
Sbjct: 1   AATQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWE 58

Query: 149 DDIRGY 154
                +
Sbjct: 59  FTEADW 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	373
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	100.0
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	100.0
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	100.0
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	100.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	100.0
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	100.0
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	100.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.98
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.97
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.97
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.96
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.95
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.93
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.92
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.91
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.91
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.91
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.9
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.8
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.8
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.73
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.72
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.71
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.68
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.61
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.57
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.4
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.82
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.21
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.19
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.73
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.49
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.47
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.4
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.26
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.85
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	96.84
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	95.79
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	95.78
3dme_A	369	Conserved exported protein; structural genomics, P	95.46
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.35
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.11
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	94.99
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	94.87
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	94.77
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	94.49
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	94.45
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	94.42
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	94.36
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	94.3
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	93.98
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	93.93
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	93.65
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	93.44
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.13
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	93.11
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	93.06
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	93.03
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	93.01
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	92.71
4hb9_A	412	Similarities with probable monooxygenase; flavin,	92.65
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	92.53
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	92.46
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.39
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	92.33
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.13
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	92.05
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	92.04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	91.95
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	91.76
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	91.58
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	91.45
1fec_A	490	Trypanothione reductase; redox-active center, oxid	91.16
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	90.95
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	90.8
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	90.73
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	90.68
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	90.33
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	90.12
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	90.07
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	90.07
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	90.05
4dna_A	463	Probable glutathione reductase; structural genomic	89.95
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	89.83
2cul_A	232	Glucose-inhibited division protein A-related PROT	89.82
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	89.65
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	89.48
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	89.45
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	89.44
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	89.27
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	89.18
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	89.05
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	88.97
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	88.96
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	88.94
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	88.68
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	88.55
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	88.4
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	88.25
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	88.2
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	88.02
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	88.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	87.99
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	87.93
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	87.9
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	87.87
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	87.8
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	87.72
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	87.65
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	87.65
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	87.48
1ojt_A	482	Surface protein; redox-active center, glycolysis,	87.41
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	87.12
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	87.09
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	87.06
3atr_A	453	Conserved archaeal protein; saturating double bond	86.83
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	86.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	86.7
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	86.55
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	86.45
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	85.89
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	85.5
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	85.47
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	85.45
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	85.43
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	85.18
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	84.55
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	84.55
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	84.2
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	83.82
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	83.81
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	83.32
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	83.31
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	83.19
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	83.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	82.84
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	82.75
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	82.67
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	82.18
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	82.17
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	82.1
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	81.57
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	81.47
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	81.26
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	81.12
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	80.77

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=100.00  E-value=5.2e-37  Score=323.35  Aligned_cols=273  Identities=26%  Similarity=0.436  Sum_probs=217.2

Q ss_pred             CCchhhcchhhhhhhh--ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC-
Q psy7654          14 SDSWFETSAKRYNSFV--THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD-   90 (373)
Q Consensus        14 g~~~~~~S~~~~~~~~--~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-   90 (373)
                      +.+++++|++.+..+.  .+.|....  ++|||++|+++|++.+          +|++|++|++|++ ++++|.|++.+ 
T Consensus       370 ~~~l~~ls~~~~~~~~~~~~~g~~~~--~~gG~~~l~~~La~~l----------~I~l~~~V~~I~~-~~~~v~V~~~~~  436 (662)
T 2z3y_A          370 ATPLSTLSLKHWDQDDDFEFTGSHLT--VRNGYSCVPVALAEGL----------DIKLNTAVRQVRY-TASGCEVIAVNT  436 (662)
T ss_dssp             TSCGGGBBTTTTTTTGGGCCBSCCEE--ETTCTTHHHHHHTTTC----------EEETTEEEEEEEE-ETTEEEEEEEES
T ss_pred             CCChhhcCHhhcCCCcccccCCceee--ecCcHHHHHHHHHhcC----------ceecCCeEEEEEE-CCCcEEEEEeec
Confidence            6688899988765432  23454433  4899999999998754          6999999999999 78889888765 


Q ss_pred             -----CcEEEcCEEEEcCCcccccc--cccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCC
Q psy7654          91 -----GSQYSADKVLITVSLGVFKS--DLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDK  163 (373)
Q Consensus        91 -----G~~~~ad~VIvtiP~~~l~~--~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~  163 (373)
                           |++++||+||+|+|+.++++  ..|.|.|+||..+.++|++++|+++.||+|.|+++||+.+...++.+.+... 
T Consensus       437 ~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~-  515 (662)
T 2z3y_A          437 RSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTA-  515 (662)
T ss_dssp             SCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSST-
T ss_pred             ccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCC-
Confidence                 56799999999999999987  2367999999999999999999999999999999999876555554421100 


Q ss_pred             CCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCC
Q psy7654         164 KNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE  243 (373)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~  243 (373)
                                                             ..+.                         ...+++.   . 
T Consensus       516 ---------------------------------------~~~~-------------------------~~~~~~~---~-  527 (662)
T 2z3y_A          516 ---------------------------------------SRGE-------------------------LFLFWNL---Y-  527 (662)
T ss_dssp             ---------------------------------------TTTE-------------------------EEEEECC---S-
T ss_pred             ---------------------------------------CCCc-------------------------eeEEEeC---C-
Confidence                                                   0010                         0011111   1 


Q ss_pred             CCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHh
Q psy7654         244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHD  323 (373)
Q Consensus       244 ~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~  323 (373)
                      +.++|++|++|..+..+..++++++++.++++|+++||.. ..++|..+.+++|.+|||++|+|+++.||+..  ..++.
T Consensus       528 ~~~vL~~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~-~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~--~~~~~  604 (662)
T 2z3y_A          528 KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSG--NDYDL  604 (662)
T ss_dssp             SSSEEEEEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTT-SSCCCSEEEECCTTTCTTTSSSCEECBTTCCT--HHHHH
T ss_pred             CCCEEEEEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCc-ccCCCceeEEEEECCCCCCCcccccCCCCCch--hhHHH
Confidence            2358999999999999999999999999999999999952 35689999999999999999999999999754  34677


Q ss_pred             hcccccC-------CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         324 LEAPLSN-------GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       324 l~~p~~~-------~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      +.+|+.+       .+..+|||||||+|+..++||||||++||+|||++|++.+.
T Consensus       605 l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~  659 (662)
T 2z3y_A          605 MAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL  659 (662)
T ss_dssp             HHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHcc
Confidence            8888742       12235899999999988899999999999999999998654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=100.00  E-value=5.9e-36  Score=321.51  Aligned_cols=272  Identities=27%  Similarity=0.462  Sum_probs=216.6

Q ss_pred             CCchhhcchhhhhhhh--ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC-
Q psy7654          14 SDSWFETSAKRYNSFV--THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD-   90 (373)
Q Consensus        14 g~~~~~~S~~~~~~~~--~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~-   90 (373)
                      +.+++.+|+..+..+.  .+.|....  ++|||++|+++|++.+          +|++|++|++|.+ ++++|.|++.+ 
T Consensus       541 ~~~l~~lSl~~~~~~~~~~~~g~~~~--~~gG~~~L~~aLa~~l----------~I~Lnt~V~~I~~-~~~gV~V~~~~~  607 (852)
T 2xag_A          541 ATPLSTLSLKHWDQDDDFEFTGSHLT--VRNGYSCVPVALAEGL----------DIKLNTAVRQVRY-TASGCEVIAVNT  607 (852)
T ss_dssp             TSCTTTBBTTTTTGGGGGCCBSCCEE--ETTCTTHHHHHHTTTC----------CEECSEEEEEEEE-ETTEEEEEEEES
T ss_pred             cCChHhhhhhhhhhccccccCCceEE--ecCcHHHHHHHHHhCC----------CEEeCCeEEEEEE-cCCcEEEEEeec
Confidence            5678888888765432  23454433  4899999999999865          4999999999999 78889888754 


Q ss_pred             -----CcEEEcCEEEEcCCcccccc--cccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCC
Q psy7654          91 -----GSQYSADKVLITVSLGVFKS--DLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDK  163 (373)
Q Consensus        91 -----G~~~~ad~VIvtiP~~~l~~--~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~  163 (373)
                           |+++.||+||||+|+.++++  ..|.|.|+||..+.++|++++|+++.||+|.|+++||+.+...++++.+... 
T Consensus       608 ~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~-  686 (852)
T 2xag_A          608 RSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTA-  686 (852)
T ss_dssp             SSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSST-
T ss_pred             ccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccC-
Confidence                 56799999999999999987  2367999999999999999999999999999999999875555655422110 


Q ss_pred             CCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCC
Q psy7654         164 KNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE  243 (373)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~  243 (373)
                                                             ..+...                    ..|     +.+    
T Consensus       687 ---------------------------------------~~~~l~--------------------~~~-----~~~----  698 (852)
T 2xag_A          687 ---------------------------------------SRGELF--------------------LFW-----NLY----  698 (852)
T ss_dssp             ---------------------------------------TTTTTC--------------------EEE-----ECS----
T ss_pred             ---------------------------------------CCCceE--------------------EEe-----cCC----
Confidence                                                   001000                    011     111    


Q ss_pred             CCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHh
Q psy7654         244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHD  323 (373)
Q Consensus       244 ~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~  323 (373)
                      +.++|++|++|..+..+..++++++++.++++|+++||.. ..++|..+.+++|.+|||++|+|+++.||+..  ..++.
T Consensus       699 ~~pvLl~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~-~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~--~~~~~  775 (852)
T 2xag_A          699 KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSYVAAGSSG--NDYDL  775 (852)
T ss_dssp             SSSEEEEEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTT-TCCCCSEEEECCTTTCTTTSSSCEECBTTCCT--THHHH
T ss_pred             CCCEEEEEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCcc-ccCCceEEEEEecCCCCCcCccccccCCCcch--hhHHH
Confidence            2348899999999999999999999999999999999952 35689999999999999999999999999754  35677


Q ss_pred             hcccccC-------CCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         324 LEAPLSN-------GQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       324 l~~p~~~-------~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                      |.+|+.+       .+..+|||||||+|+..++||||||++||+|||.+|++.+
T Consensus       776 L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l  829 (852)
T 2xag_A          776 MAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF  829 (852)
T ss_dssp             TTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence            8888742       1233589999999998889999999999999999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=100.00  E-value=9e-34  Score=289.91  Aligned_cols=303  Identities=22%  Similarity=0.315  Sum_probs=204.5

Q ss_pred             CCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcE
Q psy7654          14 SDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQ   93 (373)
Q Consensus        14 g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~   93 (373)
                      |.+++++|+..++..  ..|...  +.+| +++|+++|++.+.+       ++|++|++|++|.+.++++|.|++.+|++
T Consensus       176 g~~~~~~s~~~~~~~--~~~~~~--~~~g-~~~l~~~l~~~l~~-------~~i~~~~~V~~I~~~~~~~v~v~~~~g~~  243 (516)
T 1rsg_A          176 GLDWKLLSAKDTYFG--HQGRNA--FALN-YDSVVQRIAQSFPQ-------NWLKLSCEVKSITREPSKNVTVNCEDGTV  243 (516)
T ss_dssp             TBCTTTSBHHHHCCC--CSSCCE--EESC-HHHHHHHHHTTSCG-------GGEETTCCEEEEEECTTSCEEEEETTSCE
T ss_pred             CCChHHCChHHHHhh--ccCcch--hhhC-HHHHHHHHHHhCCC-------CEEEECCEEEEEEEcCCCeEEEEECCCcE
Confidence            667888998876432  334332  3467 99999999998862       57999999999998336679999999988


Q ss_pred             EEcCEEEEcCCccccccc---------ccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCC
Q psy7654          94 YSADKVLITVSLGVFKSD---------LITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKK  164 (373)
Q Consensus        94 ~~ad~VIvtiP~~~l~~~---------~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~  164 (373)
                      +.||+||+|+|+.+++..         .|.|.|+||..+.++++++.|+++.||++.|+++||+++...+..+.+.++. 
T Consensus       244 ~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~~~~~~~~~~~~-  322 (516)
T 1rsg_A          244 YNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE-  322 (516)
T ss_dssp             EEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCSEEEECCCCCHH-
T ss_pred             EECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCCCCcEEEeCCCCcc-
Confidence            999999999999999642         3789999999999999999999999999999999999764444333211100 


Q ss_pred             CCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCccee--eeeeeeecC
Q psy7654         165 NPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIV--DLYGFYLTT  242 (373)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~--~~~~~~~~~  242 (373)
                        +          |  ...-++..+-|.    ..|........       +          ..+..|..  .++++....
T Consensus       323 --~----------~--~~~~~~~~~~~~----~~~~~~~~~~~-------~----------~~~~~~~~~~~~~~~~~~~  367 (516)
T 1rsg_A          323 --F----------V--EIVRNAENLDEL----DSMLEREDSQK-------H----------TSVTCWSQPLFFVNLSKST  367 (516)
T ss_dssp             --H----------H--HHHHHCCSHHHH----HHHC--------------------------CCCTTSSCEEEEEHHHHT
T ss_pred             --c----------h--hhcccCcccchh----hhccccccccc-------c----------cccccccCceeEEEeeecC
Confidence              0          0  000000000000    00000000000       0          00012221  122323223


Q ss_pred             CCCceEEEEecchhhHHhhcC--CHHHHHHH---HHHHHHHHhCC-----CCCCC-------CCc--eEEeccCCCCCcc
Q psy7654         243 EDPLTFLGWISGASARFMETL--SDEQIKTE---SMKAFRFFLGA-----NYTIP-------EPS--RVFHSSWGTNKHF  303 (373)
Q Consensus       243 ~~~~~L~~~~~g~~a~~~~~l--s~e~~~~~---~~~~L~~~~g~-----~~~~~-------~~~--~~~~~~W~~dp~~  303 (373)
                       +.++|++|++|+.|..++.+  +++++++.   ++++|.++||.     +...+       .|.  .+.+++|..|||+
T Consensus       368 -~~~~L~~~~~g~~a~~~~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~  446 (516)
T 1rsg_A          368 -GVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYS  446 (516)
T ss_dssp             -SCSEEEEEECBTHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTT
T ss_pred             -CCcEEEEEecchHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCC
Confidence             34689999999999999998  89888654   66666666762     11111       254  8899999999999


Q ss_pred             ccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         304 KGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       304 ~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      +|+|+++.||+... ...+.+.++..     +|||||||+|+..++||||||++||+|||.+|++.+.
T Consensus       447 ~Gsys~~~~g~~~~-~~~~~l~~~~~-----~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~  508 (516)
T 1rsg_A          447 RGAYSACFPGDDPV-DMVVAMSNGQD-----SRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLK  508 (516)
T ss_dssp             TTCCCCCBC----C-HHHHHHHHCSS-----SSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCcCCCCCHH-HHHHHhccCCC-----CcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhh
Confidence            99999999987421 12445554322     3899999999988899999999999999999998653

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=100.00  E-value=6.8e-34  Score=303.43  Aligned_cols=273  Identities=27%  Similarity=0.480  Sum_probs=216.2

Q ss_pred             ccCCchhhcchhhhhh---hhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe
Q psy7654          12 DASDSWFETSAKRYNS---FVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC   88 (373)
Q Consensus        12 ~~g~~~~~~S~~~~~~---~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~   88 (373)
                      ..|..++++|+..+..   |..++|...+  .++|++.|+++|++.+          +|++|++|++|++ ++++|.|++
T Consensus       500 ~~G~~l~~ls~~~~~~~~~~~~~~G~~~~--~~~G~~~l~~aLa~gl----------~I~l~t~V~~I~~-~~~~v~V~~  566 (776)
T 4gut_A          500 ACGSNLHQVSARSWDHNEFFAQFAGDHTL--LTPGYSVIIEKLAEGL----------DIQLKSPVQCIDY-SGDEVQVTT  566 (776)
T ss_dssp             HHTSCTTSBBTTTTTGGGGSCCCCSCEEE--CTTCTHHHHHHHHTTS----------CEESSCCEEEEEC-SSSSEEEEE
T ss_pred             hcCCChHHcChhhhhhhhhHHhcCCCeEE--ECChHHHHHHHHHhCC----------cEEcCCeeEEEEE-cCCEEEEEE
Confidence            3467788888877543   2234455433  4899999999998755          5999999999999 788899999


Q ss_pred             CCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCc
Q psy7654          89 ADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLF  168 (373)
Q Consensus        89 ~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~  168 (373)
                      .+|+++.||+||+|+|+.+++...|.|.|+||..+.++++++.|+++.||++.|+++||++...+..+++.-...     
T Consensus       567 ~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~-----  641 (776)
T 4gut_A          567 TDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPS-----  641 (776)
T ss_dssp             TTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSS-----
T ss_pred             CCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCC-----
Confidence            999899999999999999997655789999999999999999999999999999999998642222221100000     


Q ss_pred             ccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceE
Q psy7654         169 KDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTF  248 (373)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L  248 (373)
                                                        ...                       ..+...+++... .+...+|
T Consensus       642 ----------------------------------~~~-----------------------~~~~~~~~d~~p-~g~~~vL  663 (776)
T 4gut_A          642 ----------------------------------ASK-----------------------RGLFAVFYDMDP-QKKHSVL  663 (776)
T ss_dssp             ----------------------------------GGG-----------------------TTEEEEEEESCT-TSCSCEE
T ss_pred             ----------------------------------cCC-----------------------CceEEEEecCCC-CCCceEE
Confidence                                              000                       011112233221 2334689


Q ss_pred             EEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccc
Q psy7654         249 LGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPL  328 (373)
Q Consensus       249 ~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~  328 (373)
                      ++|++|+.+..+..++++++++.++++|+++||. ...+.|..+.+++|.+|||++|+|+...||+..  ..++.|.+|+
T Consensus       664 ~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~-~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~--~~~~~L~~p~  740 (776)
T 4gut_A          664 MSVIAGEAVASVRTLDDKQVLQQCMATLRELFKE-QEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSG--EAYDIIAEDI  740 (776)
T ss_dssp             EEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTT-SCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCT--HHHHHHHCCB
T ss_pred             EEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCc-ccccCcceEEEecCCCCCccCCCCCccCCCCch--hHHHHHhCcC
Confidence            9999999999999999999999999999999995 246789999999999999999999998888643  3567788886


Q ss_pred             cCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654         329 SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILK  368 (373)
Q Consensus       329 ~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~  368 (373)
                      .+     |||||||+|+..++||||||++||+|||++|++
T Consensus       741 ~g-----rL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          741 QG-----TVFFAGEATNRHFPQTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             TT-----TEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred             CC-----cEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence            42     899999999988899999999999999999985

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=100.00  E-value=8.8e-33  Score=282.56  Aligned_cols=276  Identities=22%  Similarity=0.317  Sum_probs=215.6

Q ss_pred             hhhhccCCchhhcchhhhhhhhccCCc----------ceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEE
Q psy7654           8 QNSLDASDSWFETSAKRYNSFVTHEGC----------EDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKIN   77 (373)
Q Consensus         8 ~~~~~~g~~~~~~S~~~~~~~~~~~g~----------~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~   77 (373)
                      .+....|.+.+++|+..++.++...|.          .....++||+++|+++|++.+.        ++|++|++|++|.
T Consensus       168 ~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg--------~~i~~~~~V~~i~  239 (520)
T 1s3e_A          168 FVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLG--------DRVKLERPVIYID  239 (520)
T ss_dssp             HHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHG--------GGEESSCCEEEEE
T ss_pred             HHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHcC--------CcEEcCCeeEEEE
Confidence            344445778999999998776543221          1112348999999999999774        7899999999999


Q ss_pred             ecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCce-eE
Q psy7654          78 WEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGY-NF  156 (373)
Q Consensus        78 ~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~-~~  156 (373)
                      . ++++|.|++.+|+++.||+||+|+|+.++.+  |.|+|.||..+.+++++++|+++.|+++.|+++||++.  ++ +.
T Consensus       240 ~-~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~--~~~g~  314 (520)
T 1s3e_A          240 Q-TRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKK--DYCGT  314 (520)
T ss_dssp             C-SSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGGG--TEEEE
T ss_pred             E-CCCeEEEEECCCeEEEeCEEEECCCHHHHcc--eeeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcccCC--CCCce
Confidence            8 7888999999998999999999999999987  77889999999999999999999999999999999764  22 11


Q ss_pred             EecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeee
Q psy7654         157 FWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLY  236 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~  236 (373)
                      +....+                                         .+.                         ...++
T Consensus       315 ~~~~~~-----------------------------------------~~~-------------------------~~~~~  328 (520)
T 1s3e_A          315 MIIDGE-----------------------------------------EAP-------------------------VAYTL  328 (520)
T ss_dssp             EEECST-----------------------------------------TCS-------------------------CSEEE
T ss_pred             eeccCC-----------------------------------------CCc-------------------------eEEEe
Confidence            111100                                         000                         00112


Q ss_pred             eeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccc-cccccCC
Q psy7654         237 GFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS-IYTLTTD  315 (373)
Q Consensus       237 ~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~-~~~~g~~  315 (373)
                      +....++...+|++|+.+..+..+..++++++++.++++|+++||.. +...|..+..++|.++||++|+|+ .+.||+.
T Consensus       329 d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~-~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~  407 (520)
T 1s3e_A          329 DDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSL-EALEPVHYEEKNWCEEQYSGGCYTTYFPPGIL  407 (520)
T ss_dssp             ECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCG-GGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHH
T ss_pred             eCCCCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCcc-ccCCccEEEEEeeCCCCCCCCCCccccCCCcc
Confidence            22222333468999999988888999999999999999999999852 246789999999999999999998 6677753


Q ss_pred             ccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         316 KMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       316 ~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      .  ...+.+.+|++      +||||||+++..++|+||||++||++||++|++.+.
T Consensus       408 ~--~~~~~l~~p~~------~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l~  455 (520)
T 1s3e_A          408 T--QYGRVLRQPVD------RIYFAGTETATHWSGYMEGAVEAGERAAREILHAMG  455 (520)
T ss_dssp             H--HHGGGTTCCBT------TEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred             c--cchHHHhCCCC------CEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHHHHh
Confidence            2  12335666765      799999999987889999999999999999998764

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=100.00  E-value=4.6e-32  Score=274.05  Aligned_cols=281  Identities=30%  Similarity=0.502  Sum_probs=212.2

Q ss_pred             CCchhhcchhhhhh---hhccCCcceeeecCCcHHHHHHHHHHhCCCC---CCCCCCceEEcCCceEEEEecCCCcEEEE
Q psy7654          14 SDSWFETSAKRYNS---FVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQ---TPIDLGKKLLLNKEVTKINWEDANGVLVT   87 (373)
Q Consensus        14 g~~~~~~S~~~~~~---~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~---~~~~~G~~I~ln~~V~~I~~~~~~~v~v~   87 (373)
                      +.+.+..|+..+..   +..+.+...++..+||+++|+++|++.+...   .+.-+|++|++|++|++|+. .+++|.|+
T Consensus       172 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~-~~~~v~v~  250 (472)
T 1b37_A          172 AEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKY-SPGGVTVK  250 (472)
T ss_dssp             SSCGGGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEE-CSSCEEEE
T ss_pred             cccccccchhhccccccccccCCceeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEE-cCCcEEEE
Confidence            55666677655432   1123333333334899999999999988521   00013578999999999999 78889999


Q ss_pred             eCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCC
Q psy7654          88 CADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPL  167 (373)
Q Consensus        88 ~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~  167 (373)
                      +.+|++++||+||+|+|+.+++.+++.|.|.||..+.++++++.++++.||++.|+++||+.. .+..++...+..    
T Consensus       251 ~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~-~~~~~~~~~~~~----  325 (472)
T 1b37_A          251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEG-KGREFFLYASSR----  325 (472)
T ss_dssp             ETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCCS-TTCSEEEECCSS----
T ss_pred             ECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCCC-CCcceEEecccC----
Confidence            999989999999999999999875567899999999999999999999999999999999874 232222111100    


Q ss_pred             cccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCce
Q psy7654         168 FKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLT  247 (373)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~  247 (373)
                                                          .+..                     ..|..  ++.. .+ +..+
T Consensus       326 ------------------------------------~~~~---------------------~~~~~--~~~~-~p-~~~~  344 (472)
T 1b37_A          326 ------------------------------------RGYY---------------------GVWQE--FEKQ-YP-DANV  344 (472)
T ss_dssp             ------------------------------------TTSS---------------------CEEEE--CTTT-ST-TCCE
T ss_pred             ------------------------------------Cccc---------------------eeeec--ccCC-CC-CCCE
Confidence                                                0100                     01211  1100 12 2357


Q ss_pred             EEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhccc
Q psy7654         248 FLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAP  327 (373)
Q Consensus       248 L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p  327 (373)
                      |++++.++.++.+..++++++.+.++++|+++++. ...++|..+.+++|..|||++|+|+.+.+|+..  ...+.+.+|
T Consensus       345 l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~Pg-~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~--~~~~~l~~p  421 (472)
T 1b37_A          345 LLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPG-KDVPDATDILVPRWWSDRFYKGTFSNWPVGVNR--YEYDQLRAP  421 (472)
T ss_dssp             EEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCTT-SCCCCCSEEECCCTTTCTTTSSSEEECBTTCCH--HHHHHHHCC
T ss_pred             EEEEechHHHHHHHhCCHHHHHHHHHHHHHHHcCC-CCCCCCceEEecccCCCCCCCcccCCCCCCCCh--hHHHHHhcc
Confidence            88888777777888899999999999999999942 245678888999999999999999988888753  235678888


Q ss_pred             ccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         328 LSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       328 ~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                      ++      +||||||+++..++|+||||++||++||++|++.+
T Consensus       422 ~~------~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l  458 (472)
T 1b37_A          422 VG------RVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCA  458 (472)
T ss_dssp             BT------TEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CC------cEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence            86      89999999998778999999999999999998765

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=100.00  E-value=1.2e-32  Score=275.94  Aligned_cols=269  Identities=22%  Similarity=0.367  Sum_probs=207.9

Q ss_pred             ccCCchh-hcchhhhhhhhccCCcc---------eeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC
Q psy7654          12 DASDSWF-ETSAKRYNSFVTHEGCE---------DTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA   81 (373)
Q Consensus        12 ~~g~~~~-~~S~~~~~~~~~~~g~~---------~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~   81 (373)
                      ..+.+.+ ++|+..++.+....|..         ....++||+++|+++|++.+.        ++|++|++|++|.. ++
T Consensus       172 ~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg--------~~i~~~~~V~~i~~-~~  242 (453)
T 2yg5_A          172 GMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALG--------DDVFLNAPVRTVKW-NE  242 (453)
T ss_dssp             CCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHHG--------GGEECSCCEEEEEE-ET
T ss_pred             hcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhcC--------CcEEcCCceEEEEE-eC
Confidence            3455677 99999887665432221         112358999999999999774        78999999999998 67


Q ss_pred             Cc-EEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCcee-EEec
Q psy7654          82 NG-VLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYN-FFWT  159 (373)
Q Consensus        82 ~~-v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~-~~~~  159 (373)
                      ++ |.|++ +|+++.||+||+|+|+.++.+  |.|.|.||..+.++++++.++++.||++.|+++||+..  ++. .+..
T Consensus       243 ~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~--~~~g~~~~  317 (453)
T 2yg5_A          243 SGATVLAD-GDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED--GLSGTGFG  317 (453)
T ss_dssp             TEEEEEET-TTEEEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGGG--TEEEEEEC
T ss_pred             CceEEEEE-CCeEEEcCEEEEcCCHHHHhc--CEeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCCCC--CCCceeec
Confidence            77 88887 667899999999999999887  67889999999999999999999999999999999753  221 1111


Q ss_pred             CCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeee
Q psy7654         160 HDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFY  239 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~  239 (373)
                      .+.   |+                                                              .+   +++..
T Consensus       318 ~~~---~~--------------------------------------------------------------~~---~~~~~  329 (453)
T 2yg5_A          318 ASE---VV--------------------------------------------------------------QE---VYDNT  329 (453)
T ss_dssp             TTS---SS--------------------------------------------------------------CE---EEECC
T ss_pred             CCC---Ce--------------------------------------------------------------EE---EEeCC
Confidence            100   00                                                              01   11212


Q ss_pred             ecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccc-cccccCCccc
Q psy7654         240 LTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYS-IYTLTTDKMN  318 (373)
Q Consensus       240 ~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~-~~~~g~~~~~  318 (373)
                      ..++...+|++|+.++.+..+..++++++++.++++|+++||.  ....|..+..++|..+||++|+|. .+.||+..  
T Consensus       330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~--~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~--  405 (453)
T 2yg5_A          330 NHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGP--KAEEPVVYYESDWGSEEWTRGCYAASFDLGGLH--  405 (453)
T ss_dssp             CTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCG--GGGCCSEEEECCTTTCTTTCSSSCEEECTTHHH--
T ss_pred             CCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCc--cCCCccEEEEeecCCCCCCCCCCcCcCCCCccc--
Confidence            2222346888999888888898999999999999999999985  456788999999999999999986 55677421  


Q ss_pred             cchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         319 ASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       319 ~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      ...+.+..|++      +||||||+++..++|+||||++||++||++|++.+.|
T Consensus       406 ~~~~~~~~p~~------~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~  453 (453)
T 2yg5_A          406 RYGADSRTPVG------PIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSKA  453 (453)
T ss_dssp             HHGGGTTCCBT------TEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHhCCcC------ceEEeecccccccccchHHHHHHHHHHHHHHHHHhcC
Confidence            12234666664      8999999999878899999999999999999998764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.98  E-value=1.3e-31  Score=271.83  Aligned_cols=272  Identities=16%  Similarity=0.170  Sum_probs=210.0

Q ss_pred             hhhhhhhccCCchhhcchhhhhhhhccCCc--------ceeeecCCcHHHHHHHHHHhCCCCCCCCCC-ceEEcCCceEE
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNSFVTHEGC--------EDTVWKKGGYGNVLKLLLKQMPGQTPIDLG-KKLLLNKEVTK   75 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~~~~~~g~--------~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G-~~I~ln~~V~~   75 (373)
                      +...+...++.+.+++|+..++.+....+.        .....++||+++|+++|++.+.     +.| ++|++|++|++
T Consensus       207 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~-----~~g~~~i~~~~~V~~  281 (495)
T 2vvm_A          207 LEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAA-----GTGRLGYVFGCPVRS  281 (495)
T ss_dssp             HHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHHHH-----TTTCEEEESSCCEEE
T ss_pred             HHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHHHHhh-----hcCceEEEeCCEEEE
Confidence            334455566888999999998776532111        1112248999999999999987     556 78999999999


Q ss_pred             EEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCcee
Q psy7654          76 INWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYN  155 (373)
Q Consensus        76 I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~  155 (373)
                      |+. .+++|.|++.+|+++.||+||+|+|+.+++.  |.|.|+||..+.++++.+.|+++.||+|.|+++||+    ++.
T Consensus       282 i~~-~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~--i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~~~----~~~  354 (495)
T 2vvm_A          282 VVN-ERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMR----SWT  354 (495)
T ss_dssp             EEE-CSSSEEEEETTCCEEEEEEEEECCCGGGGGG--SEEESCCCHHHHHHHHHCCCCCCEEEEEEESCGGGG----GEE
T ss_pred             EEE-cCCEEEEEECCCCEEEcCEEEECCCHHHHhh--eeeCCCCCHHHHHHHHhcCCCceeEEEEEECCccCC----Cce
Confidence            998 7788999999988899999999999999987  778999999999999999999999999999999984    222


Q ss_pred             EEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeee
Q psy7654         156 FFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDL  235 (373)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~  235 (373)
                      .+.. ++.  ++                                                              .|   +
T Consensus       355 g~~~-~~~--~~--------------------------------------------------------------~~---~  366 (495)
T 2vvm_A          355 GIAY-PFN--KL--------------------------------------------------------------CY---A  366 (495)
T ss_dssp             EEEC-SSC--SS--------------------------------------------------------------CE---E
T ss_pred             eEec-CCC--Cc--------------------------------------------------------------EE---E
Confidence            2211 000  00                                                              01   1


Q ss_pred             eeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCC
Q psy7654         236 YGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTD  315 (373)
Q Consensus       236 ~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~  315 (373)
                      +.....++++.+|++|+.. .+ .   ++++++.+.++++|+++++.   ..+|..+.+++|..|||++|+|+++.||+.
T Consensus       367 ~~~~~~~~~~~vl~~~~~~-~~-~---~~~~e~~~~~~~~L~~~~~~---~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~  438 (495)
T 2vvm_A          367 IGDGTTPAGNTHLVCFGNS-AN-H---IQPDEDVRETLKAVGQLAPG---TFGVKRLVFHNWVKDEFAKGAWFFSRPGMV  438 (495)
T ss_dssp             EEEEECTTSCEEEEEEECS-TT-C---CCTTTCHHHHHHHHHTTSTT---SCCEEEEEECCTTTCTTTSSSSCCCCTTHH
T ss_pred             ecCCCCCCCCeEEEEEeCc-cc-c---CCCHHHHHHHHHHHHHhcCC---CCCceEEEEeEcCCCCCCCCCccCcCCCcc
Confidence            1112224445678887643 22 1   45667788999999998873   467889999999999999999999989864


Q ss_pred             ccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         316 KMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       316 ~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      .  ...+.+.+|.+      +||||||+++..++||||||++||++||++|++.+..
T Consensus       439 ~--~~~~~l~~p~~------~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~~  487 (495)
T 2vvm_A          439 S--ECLQGLREKHG------GVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGT  487 (495)
T ss_dssp             H--HHHHHHHCCBT------TEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             h--hhHHHHhCcCC------CEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhcc
Confidence            2  24667788875      7999999999878899999999999999999987653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.97  E-value=4.9e-31  Score=267.73  Aligned_cols=241  Identities=20%  Similarity=0.279  Sum_probs=189.8

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc----EEEcCEEEEcCCccccccccccc
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS----QYSADKVLITVSLGVFKSDLITF  115 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~----~~~ad~VIvtiP~~~l~~~~i~f  115 (373)
                      ++||+++|+++|++.+.        .+|++|++|++|++ ++++|.|++.+|+    +++||+||+|+|+.++..  |.|
T Consensus       236 ~~gG~~~l~~~l~~~l~--------~~i~~~~~V~~I~~-~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~--i~f  304 (498)
T 2iid_A          236 IVDGMDKLPTAMYRDIQ--------DKVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKF  304 (498)
T ss_dssp             ETTCTTHHHHHHHHHTG--------GGEESSCEEEEEEE-CSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTT--SEE
T ss_pred             eCCcHHHHHHHHHHhcc--------cccccCCEEEEEEE-CCCeEEEEEecCCcccceEEeCEEEECCChHHHhh--eec
Confidence            58999999999999986        47999999999999 7888999887664    589999999999999877  789


Q ss_pred             CCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCC-CceeEEecCCCCCCCCcccccccCCCCccccccccccceeecC
Q psy7654         116 VPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDI-RGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRF  194 (373)
Q Consensus       116 ~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  194 (373)
                      .|+||+.+.+++++++|+++.||+|.|+++||++.. .+. ..+.+ ..   .                           
T Consensus       305 ~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~~~~~-~~~~~-~~---~---------------------------  352 (498)
T 2iid_A          305 NPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGG-KSTTD-LP---S---------------------------  352 (498)
T ss_dssp             ESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGGGTCCSS-EEEES-ST---T---------------------------
T ss_pred             CCCCCHHHHHHHHhCCCcceeEEEEEeCCCCccCCCccCC-cccCC-CC---c---------------------------
Confidence            999999999999999999999999999999998631 111 11110 00   0                           


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHH
Q psy7654         195 PQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMK  274 (373)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~  274 (373)
                      ...+||+                                     ...+++.++|++|++++.+..+..++++++++.+++
T Consensus       353 ~~~~~~s-------------------------------------~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~  395 (498)
T 2iid_A          353 RFIYYPN-------------------------------------HNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFN  395 (498)
T ss_dssp             CEEECCS-------------------------------------SCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHH
T ss_pred             ceEEECC-------------------------------------CCCCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHH
Confidence            0001111                                     001233568888999998988999999999999999


Q ss_pred             HHHHHhCCCCCCCC----CceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcc
Q psy7654         275 AFRFFLGANYTIPE----PSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYG  350 (373)
Q Consensus       275 ~L~~~~g~~~~~~~----~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g  350 (373)
                      +|++++|..  .+.    +..+.+++|..+||++|+|+...|++..  ...+.+.+|.+      +|||||++++.. +|
T Consensus       396 ~L~~~~g~~--~~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~--~~~~~l~~p~~------~l~fAGe~t~~~-~g  464 (498)
T 2iid_A          396 DLSLIHQLP--KKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQ--HFSDPLTASQG------RIYFAGEYTAQA-HG  464 (498)
T ss_dssp             HHHHHHTCC--HHHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHH--HHHHHHHCCBT------TEEECSGGGSSS-SS
T ss_pred             HHHHHcCCC--hhhhhhhcCccEEEecCCCCCCCceeeecCCcchH--HHHHHHhCCCC------cEEEEEcccccC-Cc
Confidence            999999841  111    1247789999999999999988887542  23456777765      899999999864 58


Q ss_pred             hhhHHHHHHHHHHHHHHhhCC
Q psy7654         351 TVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       351 ~veGA~~SG~~AA~~i~~~~~  371 (373)
                      +|+||++||++||++|++.+.
T Consensus       465 ~~~GAi~SG~raA~~i~~~l~  485 (498)
T 2iid_A          465 WIDSTIKSGLRAARDVNLASE  485 (498)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999998764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.97  E-value=5.4e-30  Score=254.81  Aligned_cols=255  Identities=19%  Similarity=0.258  Sum_probs=196.5

Q ss_pred             hhhccCCchhhcchhhhhhhhccCCcceee-------ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC
Q psy7654           9 NSLDASDSWFETSAKRYNSFVTHEGCEDTV-------WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA   81 (373)
Q Consensus         9 ~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~-------~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~   81 (373)
                      .....+.+++++|+..+..++...|.....       ...+|+++|++++++.+        | +|++|++|++|++ ++
T Consensus       164 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~--------g-~i~~~~~V~~i~~-~~  233 (431)
T 3k7m_X          164 AWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEI--------P-EIRLQTVVTGIDQ-SG  233 (431)
T ss_dssp             HHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCEEETTCTHHHHHHHHTTC--------S-CEESSCCEEEEEC-SS
T ss_pred             HHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhhhcCCcHHHHHHHHHhhC--------C-ceEeCCEEEEEEE-cC
Confidence            344557788999999887665432211100       23899999999998754        4 8999999999998 78


Q ss_pred             CcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCC
Q psy7654          82 NGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHD  161 (373)
Q Consensus        82 ~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~  161 (373)
                      ++|.|++.+|++++||+||+|+|+++++.  |.|.|+||..+.++++.+.++...||.+.|+++||     ++...  . 
T Consensus       234 ~~v~v~~~~g~~~~ad~vi~a~~~~~l~~--i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~-----~i~~~--~-  303 (431)
T 3k7m_X          234 DVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGAEA-----GIECV--G-  303 (431)
T ss_dssp             SSEEEEETTSCCEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCT-----TEEEE--B-
T ss_pred             CeEEEEECCCCEEEeCEEEEecCcchHhh--eeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCCc-----CceEc--C-
Confidence            88999999998899999999999999987  78999999999999999999999999999999874     22111  1 


Q ss_pred             CCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec
Q psy7654         162 DKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT  241 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~  241 (373)
                      +.                                                                   +...+++....
T Consensus       304 d~-------------------------------------------------------------------~~~~~~~~~~~  316 (431)
T 3k7m_X          304 DG-------------------------------------------------------------------IFPTLYDYCEV  316 (431)
T ss_dssp             SS-------------------------------------------------------------------SSSEEEEEEEC
T ss_pred             CC-------------------------------------------------------------------CEEEEEeCcCC
Confidence            10                                                                   00011222332


Q ss_pred             CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccch
Q psy7654         242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR  321 (373)
Q Consensus       242 ~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~  321 (373)
                      ..+..+|++|+.++.   +...+++    .+.+.|+++++.   . .|..+..++|..|||++|+|+++.||+..  ...
T Consensus       317 ~~~~~~l~~~~~g~~---~~~~~~~----~~~~~l~~~~~~---~-~~~~~~~~~W~~d~~~~G~~~~~~~g~~~--~~~  383 (431)
T 3k7m_X          317 SESERLLVAFTDSGS---FDPTDIG----AVKDAVLYYLPE---V-EVLGIDYHDWIADPLFEGPWVAPRVGQFS--RVH  383 (431)
T ss_dssp             SSSEEEEEEEEETTT---CCTTCHH----HHHHHHHHHCTT---C-EEEEEECCCTTTCTTTSSSSCCCCTTTTT--TSS
T ss_pred             CCCCeEEEEEecccc---CCCCCHH----HHHHHHHHhcCC---C-CccEeEecccCCCCCCCCCCCCcCCCCCc--ccH
Confidence            233467888888765   3333332    456677888763   3 37888999999999999999999999743  467


Q ss_pred             HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhh
Q psy7654         322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS  369 (373)
Q Consensus       322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~  369 (373)
                      +.|.+|.+      |||||||+++..++||||||++||+|||.+|+..
T Consensus       384 ~~l~~p~g------~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          384 KELGEPAG------RIHFVGSDVSLEFPGYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             GGGGSCBT------TEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCC------cEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence            88999976      8999999999889999999999999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.96  E-value=1e-28  Score=250.10  Aligned_cols=245  Identities=18%  Similarity=0.275  Sum_probs=186.9

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcCCccccccccccc
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITVSLGVFKSDLITF  115 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvtiP~~~l~~~~i~f  115 (373)
                      .++||+++|+++|++.+.+       ++|++|++|++|++ ++++|.|++.+|   +++.||+||+|+|+.+++.  |.+
T Consensus       233 ~~~gG~~~l~~~l~~~l~~-------~~i~~~~~V~~i~~-~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~--l~~  302 (489)
T 2jae_A          233 TPVGGMDRIYYAFQDRIGT-------DNIVFGAEVTSMKN-VSEGVTVEYTAGGSKKSITADYAICTIPPHLVGR--LQN  302 (489)
T ss_dssp             EETTCTTHHHHHHHHHHCG-------GGEETTCEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEECSCHHHHTT--SEE
T ss_pred             eecCCHHHHHHHHHHhcCC-------CeEEECCEEEEEEE-cCCeEEEEEecCCeEEEEECCEEEECCCHHHHHh--Ccc
Confidence            3589999999999998852       58999999999999 788899988776   5789999999999999887  555


Q ss_pred             CCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCC
Q psy7654         116 VPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFP  195 (373)
Q Consensus       116 ~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  195 (373)
                        +||+.+.+++++++|+++.||++.|+++||++....++.+...+..   +                .           
T Consensus       303 --~l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~---~----------------~-----------  350 (489)
T 2jae_A          303 --NLPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKD---I----------------S-----------  350 (489)
T ss_dssp             --CCCHHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESST---T----------------C-----------
T ss_pred             --CCCHHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCCCC---c----------------e-----------
Confidence              6899999999999999999999999999997642222111100000   0                0           


Q ss_pred             CCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEE-EEecchhhHHhhcCCHHHHHHHHHH
Q psy7654         196 QKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFL-GWISGASARFMETLSDEQIKTESMK  274 (373)
Q Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~-~~~~g~~a~~~~~ls~e~~~~~~~~  274 (373)
                      ..|||+.                                .+     +..+++|+ +|++++.+..+..++++++++.+++
T Consensus       351 ~~~~~s~--------------------------------~~-----~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~  393 (489)
T 2jae_A          351 QIMFPYD--------------------------------HY-----NSDRGVVVAYYSSGKRQEAFESLTHRQRLAKAIA  393 (489)
T ss_dssp             EEECCSS--------------------------------ST-----TSSCEEEEEEEEETHHHHHHHTSCHHHHHHHHHH
T ss_pred             EEEeCCC--------------------------------CC-----CCCCCEEEEEeeCCchhhhhhcCCHHHHHHHHHH
Confidence            0011110                                00     01133555 5899999989999999999999999


Q ss_pred             HHHHHhCCCCCCCCCceEEeccCCCCCcccccccccc------ccCCccccchHhhcccccCCCCCceEEEeccccCCCC
Q psy7654         275 AFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYT------LTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQ  348 (373)
Q Consensus       275 ~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~------~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~  348 (373)
                      +|++++|.+ ...+|.....++|.++||+.|+|+.+.      ||...  ...+.+.+|.+      +|||||++++. +
T Consensus       394 ~L~~~~~~~-~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~l~~~~~------~l~faG~~~~~-~  463 (489)
T 2jae_A          394 EGSEIHGEK-YTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAAT--PEYEKLLEPVD------KIYFAGDHLSN-A  463 (489)
T ss_dssp             HHHHHHCGG-GGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CC--HHHHHHTSCBT------TEEECSGGGBS-S
T ss_pred             HHHHHcCcc-hhhhccccEEEEcCCCCCCCCcchhcccccCCCcccch--hhHHHHhCCCC------cEEEeEHHhcc-C
Confidence            999999841 124677788899999999999999876      66432  24566777765      89999999985 5


Q ss_pred             cchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         349 YGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       349 ~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      .++|+||++||.+||++|++.+.+
T Consensus       464 ~~~v~gAi~sg~~aA~~i~~~l~~  487 (489)
T 2jae_A          464 IAWQHGALTSARDVVTHIHERVAQ  487 (489)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999987654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.95  E-value=5.9e-29  Score=261.52  Aligned_cols=277  Identities=12%  Similarity=0.085  Sum_probs=190.2

Q ss_pred             CchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceE--EEEecCCCc-------EE
Q psy7654          15 DSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVT--KINWEDANG-------VL   85 (373)
Q Consensus        15 ~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~--~I~~~~~~~-------v~   85 (373)
                      .+...+|+..++.+.-.+.......+.||+++|+++|++.+.+      |+.|++|++|+  +|.+ ++++       |.
T Consensus       317 ~~~~~~S~le~L~~~~~~~~~~~~~i~GG~~~L~~aLa~~l~~------g~~I~l~~~V~~~~I~~-~~~g~~~~~~~V~  389 (721)
T 3ayj_A          317 KPLYNISLVEMMRLILWDYSNEYTLPVTENVEFIRNLFLKAQN------VGAGKLVVQVRQERVAN-ACHSGTASARAQL  389 (721)
T ss_dssp             GGGTTBBHHHHHHHHHTTTTCEECCSSSSTHHHHHHHHHHHHH------HTTTSEEEEEECEEEEE-EEECSSSSCCEEE
T ss_pred             CCccchhHHHHHHHHhcCCccceeEECCcHHHHHHHHHHhccc------CCceEeCCEEEeeeEEE-CCCCCccccceEE
Confidence            4566788887766542221222334589999999999998720      25799999999  9998 4443       88


Q ss_pred             E-EeCCCc--EEEcCEEEEcCCcccccc----cccc-------c---------------CCCC-C-------HHHHHHHh
Q psy7654          86 V-TCADGS--QYSADKVLITVSLGVFKS----DLIT-------F---------------VPPL-P-------PQKKNIIE  128 (373)
Q Consensus        86 v-~~~~G~--~~~ad~VIvtiP~~~l~~----~~i~-------f---------------~p~L-p-------~~~~~ai~  128 (373)
                      | .+.+|+  +++||+||+|+|++++..    ..|.       +               .|.| |       ..+.++++
T Consensus       390 V~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~  469 (721)
T 3ayj_A          390 LSYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIG  469 (721)
T ss_dssp             EEEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHH
T ss_pred             EEEecCCceEEEEcCEEEECCCHHHHhhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHH
Confidence            8 456676  789999999999998842    2244       3               3446 8       89999999


Q ss_pred             cCCCcceeEEEEEc-----CCCCCCCCCCce--eEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCC
Q psy7654         129 SLFLGTVDKVFVRF-----PQKWWPDDIRGY--NFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPD  201 (373)
Q Consensus       129 ~~~~~~~~kv~l~~-----~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  201 (373)
                      +++|+++.||++.|     ++|||++. .+.  ...+++..    +                    ..+|+-    ++|+
T Consensus       470 ~l~~~~s~Kv~l~~~~~~~~~~fW~~~-~g~~i~~s~TD~~----~--------------------r~~~~~----p~p~  520 (721)
T 3ayj_A          470 QLHMARSSKVFATVKTAALDQPWVPQW-RGEPIKAVVSDSG----L--------------------AASYVV----PSPI  520 (721)
T ss_dssp             TCCEECEEEEEEEEEGGGGGSTTSCEE-TTEECCEEEETTT----T--------------------EEEEEE----ECSC
T ss_pred             hcCcccceEEEEEEccccCCCCccccc-CCCCceeeecCCC----c--------------------ceEEEe----ccCc
Confidence            99999999999999     99999975 221  12211110    0                    000000    0000


Q ss_pred             CCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHh------hcCCHHHH-------
Q psy7654         202 DVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFM------ETLSDEQI-------  268 (373)
Q Consensus       202 ~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~------~~ls~e~~-------  268 (373)
                      .                                 .+.. .++...+|.+|+++++|.++      ..++++++       
T Consensus       521 ~---------------------------------~d~~-~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~  566 (721)
T 3ayj_A          521 V---------------------------------EDGQ-APEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGM  566 (721)
T ss_dssp             C--------------------------------------CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHH
T ss_pred             c---------------------------------cccC-CCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHH
Confidence            0                                 0111 11222466779999999998      66777777       


Q ss_pred             HHHHHHHHH--HHhCCCCC------------CCCCceEEeccCCCCCccccccccccccCCc----cccch--Hhhcccc
Q psy7654         269 KTESMKAFR--FFLGANYT------------IPEPSRVFHSSWGTNKHFKGSYSIYTLTTDK----MNASR--HDLEAPL  328 (373)
Q Consensus       269 ~~~~~~~L~--~~~g~~~~------------~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~----~~~~~--~~l~~p~  328 (373)
                      ++.++++|+  ++||. ..            ...+.++..++|.+|| +.|+|..+.||+..    +.++.  ..+.+|.
T Consensus       567 ~~~~l~~la~~~~~p~-~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~  644 (721)
T 3ayj_A          567 YRTMVNRAYRYVKYAG-ASNAQPWWFYQLLAEARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAASLD  644 (721)
T ss_dssp             HHHHHHHTCCEECCTT-CSSCEECHHHHHHHTSCSTTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCTTTC
T ss_pred             HHHHHHHHhhhccCcc-ccccccchhhhhhhhcccCceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhccccCCC
Confidence            999999999  88874 21            0124567899999999 99999999999721    00011  1122233


Q ss_pred             cCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         329 SNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       329 ~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                            +|||||||++|. +.||||||++||.+||.+|+..+
T Consensus       645 ------gri~fAGe~~S~-~~GWieGAl~Sa~~Aa~~i~~~~  679 (721)
T 3ayj_A          645 ------NRFFIASDSYSH-LGGWLEGAFMSALNAVAGLIVRA  679 (721)
T ss_dssp             ------CCEEECSGGGSS-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCEEEeehhhcc-CCceehHHHHHHHHHHHHHHHHh
Confidence                  389999999995 68999999999999999998754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.93  E-value=1.5e-25  Score=224.35  Aligned_cols=270  Identities=15%  Similarity=0.164  Sum_probs=195.8

Q ss_pred             hhhhccCCchhhcchhhhhhhhc-----c----CC-----------------cceeeecCCcHHHHHHHHHHhCCCCCCC
Q psy7654           8 QNSLDASDSWFETSAKRYNSFVT-----H----EG-----------------CEDTVWKKGGYGNVLKLLLKQMPGQTPI   61 (373)
Q Consensus         8 ~~~~~~g~~~~~~S~~~~~~~~~-----~----~g-----------------~~~~~~~~gG~~~L~~~L~~~l~~~~~~   61 (373)
                      .+...++.+.+++|+...+.++.     +    .+                 .......+||+++|+++|++.+..    
T Consensus       172 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~----  247 (470)
T 3i6d_A          172 LLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL----  247 (470)
T ss_dssp             HHHHTTCSCTTTBBHHHHCGGGCC-------------------------------EEEETTCTHHHHHHHHHTCCS----
T ss_pred             hhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC----
Confidence            34445577888999876654331     0    00                 011223589999999999998852    


Q ss_pred             CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEE
Q psy7654          62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVR  141 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~  141 (373)
                         ++|++|++|++|++ ++++|.|++.+|+++.||+||+|+|+.++.+  +.+.|+    ..++++++.|+++.||++.
T Consensus       248 ---~~i~~~~~V~~i~~-~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~--l~~~~~----~~~~~~~~~~~~~~~v~l~  317 (470)
T 3i6d_A          248 ---TKVYKGTKVTKLSH-SGSCYSLELDNGVTLDADSVIVTAPHKAAAG--MLSELP----AISHLKNMHSTSVANVALG  317 (470)
T ss_dssp             ---EEEECSCCEEEEEE-CSSSEEEEESSSCEEEESEEEECSCHHHHHH--HTTTST----THHHHHTCEEEEEEEEEEE
T ss_pred             ---CEEEeCCceEEEEE-cCCeEEEEECCCCEEECCEEEECCCHHHHHH--HcCCch----hhHHHhcCCCCceEEEEEE
Confidence               68999999999999 7788999999998899999999999999887  444442    2568899999999999999


Q ss_pred             cCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccc
Q psy7654         142 FPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFK  221 (373)
Q Consensus       142 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  221 (373)
                      |+++||+....+++++++..+... +                .                                     
T Consensus       318 ~~~~~~~~~~~~~g~l~~~~~~~~-~----------------~-------------------------------------  343 (470)
T 3i6d_A          318 FPEGSVQMEHEGTGFVISRNSDFA-I----------------T-------------------------------------  343 (470)
T ss_dssp             ESSTTCCCSSCSSEEEECSTTCCS-E----------------E-------------------------------------
T ss_pred             ECchhcCCCCCCeEEEccCCCCCC-c----------------e-------------------------------------
Confidence            999999876666666644322100 0                0                                     


Q ss_pred             cccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCC
Q psy7654         222 DTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNK  301 (373)
Q Consensus       222 d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp  301 (373)
                            ...|.+..++... +++..+|++++++..++.+..++++++++.++++|+++||.   .++|....+++|..  
T Consensus       344 ------~~~~~s~~~~~~~-p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---~~~p~~~~~~~w~~--  411 (470)
T 3i6d_A          344 ------ACTWTNKKWPHAA-PEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNI---NGEPEMTCVTRWHE--  411 (470)
T ss_dssp             ------EEEEHHHHCGGGS-CTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCC---CSCCSEEEEEEEEE--
T ss_pred             ------EEEEEcCcCCCcC-CCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHhCC---CCCceEEEEEEcCC--
Confidence                  0123322222222 33456788888888888888999999999999999999995   35788999999975  


Q ss_pred             ccccccccccccCCcc-ccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhC
Q psy7654         302 HFKGSYSIYTLTTDKM-NASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSD  370 (373)
Q Consensus       302 ~~~G~~~~~~~g~~~~-~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~  370 (373)
                          +++.+.+|+... ....+.+.++.+      +||||||++.+.   +|+||+.||++||++|++.|
T Consensus       412 ----a~p~~~~g~~~~~~~~~~~l~~~~~------~l~~aG~~~~g~---gv~~a~~sG~~aA~~i~~~l  468 (470)
T 3i6d_A          412 ----SMPQYHVGHKQRIKELREALASAYP------GVYMTGASFEGV---GIPDCIDQGKAAVSDALTYL  468 (470)
T ss_dssp             ----EEEECBTTHHHHHHHHHHHHHHHST------TEEECSTTTSCC---SHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccCCCCCCHHHHHHHHHHHHHhhCC------CEEEEeecCCCC---CHHHHHHHHHHHHHHHHHHh
Confidence                455555664210 012233555554      799999998753   49999999999999999865

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.92  E-value=1.8e-24  Score=217.92  Aligned_cols=238  Identities=16%  Similarity=0.163  Sum_probs=175.8

Q ss_pred             eecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCC
Q psy7654          38 VWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVP  117 (373)
Q Consensus        38 ~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p  117 (373)
                      ..++||+++|+++|++.+..       ++|++|++|++|++ .+++|.|++.+| ++.||+||+|+|++++.+  +.+.+
T Consensus       229 ~~~~~G~~~l~~~l~~~l~~-------~~i~~~~~V~~i~~-~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~--ll~~~  297 (475)
T 3lov_A          229 LSLETGLESLIERLEEVLER-------SEIRLETPLLAISR-EDGRYRLKTDHG-PEYADYVLLTIPHPQVVQ--LLPDA  297 (475)
T ss_dssp             EEETTCHHHHHHHHHHHCSS-------CEEESSCCCCEEEE-ETTEEEEECTTC-CEEESEEEECSCHHHHHH--HCTTS
T ss_pred             EeeCChHHHHHHHHHhhccC-------CEEEcCCeeeEEEE-eCCEEEEEECCC-eEECCEEEECCCHHHHHH--HcCcc
Confidence            34589999999999999962       58999999999999 788899999999 899999999999999887  44444


Q ss_pred             CCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCC
Q psy7654         118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQK  197 (373)
Q Consensus       118 ~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  197 (373)
                      ++     ++++++.|+++.||++.|+++| +....+++++.+..+... +                ++            
T Consensus       298 ~~-----~~~~~~~~~~~~~v~l~~~~~~-~~~~~g~g~l~~~~~~~~-~----------------~~------------  342 (475)
T 3lov_A          298 HL-----PELEQLTTHSTATVTMIFDQQQ-SLPIEGTGFVVNRRAPYS-I----------------TA------------  342 (475)
T ss_dssp             CC-----HHHHTCCEEEEEEEEEEEECCS-SCSSSSSEEEECTTSSCS-E----------------EE------------
T ss_pred             CH-----HHHhcCCCCeEEEEEEEECCcC-CCCCCCEEEEecCCCCCc-e----------------EE------------
Confidence            43     6789999999999999999998 444456666643321100 0                00            


Q ss_pred             CCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHH
Q psy7654         198 WWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFR  277 (373)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~  277 (373)
                                                     ..|.+..++... ++ ..+|.+|+++..+..+..++++++++.++++|+
T Consensus       343 -------------------------------~~~~s~~~~~~~-p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~  389 (475)
T 3lov_A          343 -------------------------------CTAIDQKWNHSA-PD-HTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLE  389 (475)
T ss_dssp             -------------------------------EEEHHHHCTTTC-TT-EEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHH
T ss_pred             -------------------------------EEEEcccCCCCC-CC-cEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHH
Confidence                                           112222222111 22 457788888888888889999999999999999


Q ss_pred             HHhCCCCCCCCCceEEeccCCCCCccccccccccccCCcc-ccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHH
Q psy7654         278 FFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKM-NASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAV  356 (373)
Q Consensus       278 ~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~-~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~  356 (373)
                      ++||.   ..+|....+++|..+      ++.+.+|+... ....+.+..|.+      +||||||++.+   .+|+||+
T Consensus       390 ~~~g~---~~~p~~~~v~~w~~a------~p~~~~g~~~~~~~~~~~l~~~~~------~l~~aG~~~~g---~g~~~a~  451 (475)
T 3lov_A          390 KICGR---TLEPKQVIISRLMDG------LPAYTVGHADRIQRVREEVLAQYP------GIYLAGLAYDG---VGLPDCV  451 (475)
T ss_dssp             HHHSS---CCCCSEEEEEEEEEE------EECCCTTHHHHHHHHHHHHHHHST------TEEECSTTTSC---SSHHHHH
T ss_pred             HHhCC---CCCCeEEEEEEcccC------CCCCCCChHHHHHHHHHHHHhhCC------CEEEEccCCCC---CCHHHHH
Confidence            99996   247889999999863      34445554210 011233555554      79999999875   2599999


Q ss_pred             HHHHHHHHHHHhhCCC
Q psy7654         357 ETGWREADRILKSDPA  372 (373)
Q Consensus       357 ~SG~~AA~~i~~~~~~  372 (373)
                      +||++||++|++.+..
T Consensus       452 ~sG~~aA~~i~~~l~~  467 (475)
T 3lov_A          452 ASAKTMIESIELEQSH  467 (475)
T ss_dssp             HHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999998764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.91  E-value=1.8e-23  Score=210.70  Aligned_cols=240  Identities=14%  Similarity=0.229  Sum_probs=171.7

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCCcEEEcCEEEEcCCccccccccccc
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADGSQYSADKVLITVSLGVFKSDLITF  115 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G~~~~ad~VIvtiP~~~l~~~~i~f  115 (373)
                      .++||+++|+++|++.+.        ++|++|++|++|.. ++++|.|++   .+|+++.||+||+|+|+.++..  +  
T Consensus       232 ~~~gG~~~l~~~l~~~lg--------~~i~~~~~V~~i~~-~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~--l--  298 (478)
T 2ivd_A          232 TFDGGLQVLIDALAASLG--------DAAHVGARVEGLAR-EDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAK--L--  298 (478)
T ss_dssp             EETTCTHHHHHHHHHHHG--------GGEESSEEEEEEEC-C--CCEEEEEETTEEEEEECSEEEECSCHHHHHH--H--
T ss_pred             EECCCHHHHHHHHHHHhh--------hhEEcCCEEEEEEe-cCCeEEEEEeecCCCceEEcCEEEECCCHHHHHH--H--
Confidence            458999999999999874        68999999999998 677788887   6777899999999999999876  3  


Q ss_pred             CCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCC
Q psy7654         116 VPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFP  195 (373)
Q Consensus       116 ~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  195 (373)
                      .|.+|+.+.++++++.|+++.||++.|++++|+.. .+++++.+..+.. ++                            
T Consensus       299 l~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~-~~----------------------------  348 (478)
T 2ivd_A          299 LRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-DGFGFLVPAEEQR-RM----------------------------  348 (478)
T ss_dssp             HTTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCC-CSSEEECCGGGCC-SC----------------------------
T ss_pred             hhccCHHHHHHHhcCCCCcEEEEEEEEccccCCCC-CceEEEecCCCCC-ce----------------------------
Confidence            26789888999999999999999999999999863 3444442110000 00                            


Q ss_pred             CCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHH
Q psy7654         196 QKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKA  275 (373)
Q Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~  275 (373)
                              .+                       ..|.+..++.. .+.+..+|++++++..+..+..++++++.+.++++
T Consensus       349 --------~~-----------------------~~~~s~~~~~~-~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (478)
T 2ivd_A          349 --------LG-----------------------AIHASTTFPFR-AEGGRVLYSCMVGGARQPGLVEQDEDALAALAREE  396 (478)
T ss_dssp             --------CE-----------------------EEEHHHHCGGG-BSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHH
T ss_pred             --------EE-----------------------EEEEcccCCCc-CCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHH
Confidence                    00                       01111111111 13334578888888877778889999999999999


Q ss_pred             HHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHH
Q psy7654         276 FRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGA  355 (373)
Q Consensus       276 L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA  355 (373)
                      |++++|.   ...|....+++|..      +++.+.+|+..   ....+..+...   .++|||||+++.+   ++|+||
T Consensus       397 l~~~~~~---~~~p~~~~~~~w~~------~~p~~~~g~~~---~~~~~~~~~~~---~~~l~~aG~~~~g---~gv~gA  458 (478)
T 2ivd_A          397 LKALAGV---TARPSFTRVFRWPL------GIPQYNLGHLE---RVAAIDAALQR---LPGLHLIGNAYKG---VGLNDC  458 (478)
T ss_dssp             HHHHHCC---CSCCSEEEEEEESS------CCBCCBTTHHH---HHHHHHHHHHT---STTEEECSTTTSC---CSHHHH
T ss_pred             HHHHhCC---CCCCcEEEEEECCC------cccCCCcCHHH---HHHHHHHHHhh---CCCEEEEccCCCC---CCHHHH
Confidence            9999985   24688888899975      45555566421   12222222210   1389999999853   359999


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy7654         356 VETGWREADRILKSDP  371 (373)
Q Consensus       356 ~~SG~~AA~~i~~~~~  371 (373)
                      +.||.+||++|++.+.
T Consensus       459 ~~SG~~aA~~i~~~l~  474 (478)
T 2ivd_A          459 IRNAAQLADALVAGNT  474 (478)
T ss_dssp             HHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999988765

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.91  E-value=2.8e-23  Score=200.67  Aligned_cols=232  Identities=12%  Similarity=0.097  Sum_probs=170.4

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCC
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPL  119 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L  119 (373)
                      ..+|+++++++|++.+.        .+|++|++|++|++ ++++|.|++.+|+++.+|+||+|+|++.+.+++-.+.|.|
T Consensus       107 ~~~g~~~l~~~l~~~~g--------~~i~~~~~V~~i~~-~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          107 APQGISSIIKHYLKESG--------AEVYFRHRVTQINL-RDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             CTTCTTHHHHHHHHHHT--------CEEESSCCEEEEEE-CSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             cCCCHHHHHHHHHHhcC--------CEEEeCCEEEEEEE-cCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            48999999999998763        79999999999999 7888999998887789999999999998877322345678


Q ss_pred             CHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654         120 PPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW  199 (373)
Q Consensus       120 p~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  199 (373)
                      |+...++++++.|+++.+|.+.|+++||.+. +..+++.+....                                    
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~~~~------------------------------------  220 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAGTKIDV-PWAGQYITSNPC------------------------------------  220 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSCC--CC-SCSEEECSSCSS------------------------------------
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCCCccCC-ceeeEEccCCcc------------------------------------
Confidence            8888999999999999999999999988753 223333211000                                    


Q ss_pred             CCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec----CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHH
Q psy7654         200 PDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT----TEDPLTFLGWISGASARFMETLSDEQIKTESMKA  275 (373)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~----~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~  275 (373)
                                                   ..|..  ++..+.    +.+..+++.++++..++.+..++++++.+.++++
T Consensus       221 -----------------------------~~~~~--~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (342)
T 3qj4_A          221 -----------------------------IRFVS--IDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQELVFQQ  269 (342)
T ss_dssp             -----------------------------EEEEE--EHHHHTTCCCC-CCCEEEEEECHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             -----------------------------eEEEE--ccccCCCCCCCCCCceEEEECCHHHHHHhhcCCHHHHHHHHHHH
Confidence                                         01211  111111    1112378888888888888899999999999999


Q ss_pred             HHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHH
Q psy7654         276 FRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGA  355 (373)
Q Consensus       276 L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA  355 (373)
                      |++++|.   .++|..+.+++|..      +.+.+....     ....+...     ..++|++|||++.+   +.||||
T Consensus       270 l~~~~g~---~~~p~~~~v~rW~~------a~p~~~~~~-----~~~~~~~~-----~~~~l~laGd~~~g---~~v~~a  327 (342)
T 3qj4_A          270 LENILPG---LPQPIATKCQKWRH------SQVTNAAAN-----CPGQMTLH-----HKPFLACGGDGFTQ---SNFDGC  327 (342)
T ss_dssp             HHHHSCS---CCCCSEEEEEEETT------CSBSSCCSS-----SCSCEEEE-----TTTEEEECSGGGSC---SSHHHH
T ss_pred             HHHhccC---CCCCceeeeccccc------cccccccCC-----CcceeEec-----CCccEEEEccccCC---CCccHH
Confidence            9999994   56899999999985      222221110     01112201     12489999999976   489999


Q ss_pred             HHHHHHHHHHHHhhC
Q psy7654         356 VETGWREADRILKSD  370 (373)
Q Consensus       356 ~~SG~~AA~~i~~~~  370 (373)
                      ++||.+||++|++.|
T Consensus       328 i~sg~~aa~~i~~~l  342 (342)
T 3qj4_A          328 ITSALCVLEALKNYI  342 (342)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999998764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.91  E-value=2.2e-24  Score=218.95  Aligned_cols=244  Identities=19%  Similarity=0.280  Sum_probs=172.0

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc------EEEEeC--CC---cEEEcCEEEEcCCccc
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG------VLVTCA--DG---SQYSADKVLITVSLGV  107 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~------v~v~~~--~G---~~~~ad~VIvtiP~~~  107 (373)
                      .++||+++|+++|++.+.+       ++|++|++|++|.+ .+++      |.|++.  +|   +++.||+||+|+|+..
T Consensus       237 ~~~GG~~~l~~~l~~~l~~-------~~i~~~~~V~~I~~-~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~  308 (504)
T 1sez_A          237 SFLGGMQTLTDAICKDLRE-------DELRLNSRVLELSC-SCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCD  308 (504)
T ss_dssp             EETTCTHHHHHHHHTTSCT-------TTEETTCCEEEEEE-ECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHH
T ss_pred             eeCcHHHHHHHHHHhhccc-------ceEEcCCeEEEEEe-cCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHH
Confidence            3589999999999997742       58999999999998 5555      766654  45   5789999999999999


Q ss_pred             cccccccc---CCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCcccccc
Q psy7654         108 FKSDLITF---VPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFL  184 (373)
Q Consensus       108 l~~~~i~f---~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (373)
                      +.+  +.+   .+++++.   .++++.+.++.+|++.|++++|+....+++++++..+....+              ..+
T Consensus       309 l~~--ll~~~~~~~~~~~---~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~--------------~~~  369 (504)
T 1sez_A          309 VKS--MKIAKRGNPFLLN---FIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGL--------------KTL  369 (504)
T ss_dssp             HHT--SEEESSSSBCCCT---TSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTC--------------CSS
T ss_pred             HHH--HhhcccCCcccHH---HHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCC--------------ccc
Confidence            987  332   1234432   277889999999999999999987666676664321100000              000


Q ss_pred             ccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCC
Q psy7654         185 GTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLS  264 (373)
Q Consensus       185 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls  264 (373)
                                          +                       ..|.+..++... +++..+|++|+++..+..+..++
T Consensus       370 --------------------~-----------------------~~~~s~~~~~~~-p~g~~~l~~~~~g~~~~~~~~~~  405 (504)
T 1sez_A          370 --------------------G-----------------------TLFSSMMFPDRA-PNNVYLYTTFVGGSRNRELAKAS  405 (504)
T ss_dssp             --------------------E-----------------------EEEHHHHCGGGS-CTTEEEEEEEEESTTCGGGTTCC
T ss_pred             --------------------e-----------------------EEeeccccCCcC-CCCCEEEEEEeCCCCcccccCCC
Confidence                                0                       012222222211 33455788899998888888999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEecccc
Q psy7654         265 DEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEAS  344 (373)
Q Consensus       265 ~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~  344 (373)
                      ++++++.++++|++++|.   ..+|..+.+++|.+      +|+.+.+|+.........+..|++      +|||||+++
T Consensus       406 ~ee~~~~v~~~L~~~~g~---~~~p~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~~~~~~------~l~~aG~~~  470 (504)
T 1sez_A          406 RTELKEIVTSDLKQLLGA---EGEPTYVNHLYWSK------AFPLYGHNYDSVLDAIDKMEKNLP------GLFYAGNHR  470 (504)
T ss_dssp             HHHHHHHHHHHHHHHHCB---CSCCSSEEEEEEEE------EEECCCTTHHHHHHHHHHHHHHST------TEEECCSSS
T ss_pred             HHHHHHHHHHHHHHHhCC---CCCCeEEEEeECCC------CCCccCcCHHHHHHHHHHHHHhCC------CEEEEeecC
Confidence            999999999999999995   24688889999975      445555554211001122334544      799999998


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         345 NEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       345 s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      ++   ++|+||+.||.+||++|++.+.
T Consensus       471 ~g---~~v~gai~sG~~aA~~il~~l~  494 (504)
T 1sez_A          471 GG---LSVGKALSSGCNAADLVISYLE  494 (504)
T ss_dssp             SC---SSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CC---CCHHHHHHHHHHHHHHHHHHHh
Confidence            74   5899999999999999998654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.90  E-value=1.9e-23  Score=210.18  Aligned_cols=242  Identities=19%  Similarity=0.238  Sum_probs=175.9

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCcccccccccccCC
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLGVFKSDLITFVP  117 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p  117 (373)
                      .++||+++|+++|++.+.     +.|++|++|++|++|++ ++++ |.|++.+ .++.||+||+|+|++.+.+  +  .+
T Consensus       228 ~~~gG~~~l~~~l~~~l~-----~~g~~i~~~~~V~~i~~-~~~~~~~v~~~~-~~~~ad~vv~a~p~~~~~~--l--l~  296 (477)
T 3nks_A          228 SLRGGLEMLPQALETHLT-----SRGVSVLRGQPVCGLSL-QAEGRWKVSLRD-SSLEADHVISAIPASVLSE--L--LP  296 (477)
T ss_dssp             EETTCTTHHHHHHHHHHH-----HTTCEEECSCCCCEEEE-CGGGCEEEECSS-CEEEESEEEECSCHHHHHH--H--SC
T ss_pred             EECCCHHHHHHHHHHHHH-----hcCCEEEeCCEEEEEEE-cCCceEEEEECC-eEEEcCEEEECCCHHHHHH--h--cc
Confidence            458999999999999987     56889999999999998 6666 8887744 4899999999999999876  2  24


Q ss_pred             CCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCC
Q psy7654         118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQK  197 (373)
Q Consensus       118 ~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  197 (373)
                      .+++...++++++.|.++.+|.+.|++++|+.+  +++++.+..+...                 ++|            
T Consensus       297 ~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~--~~g~l~~~~~~~~-----------------~~~------------  345 (477)
T 3nks_A          297 AEAAPLARALSAITAVSVAVVNLQYQGAHLPVQ--GFGHLVPSSEDPG-----------------VLG------------  345 (477)
T ss_dssp             GGGHHHHHHHHTCCEEEEEEEEEEETTCCCSSC--SSEEECCTTTCSS-----------------EEE------------
T ss_pred             ccCHHHHHHHhcCCCCcEEEEEEEECCCCCCCC--CceEEccCCCCCC-----------------ceE------------
Confidence            455667788999999999999999999999643  5666643221100                 011            


Q ss_pred             CCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhh----cCCHHHHHHHHH
Q psy7654         198 WWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFME----TLSDEQIKTESM  273 (373)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~----~ls~e~~~~~~~  273 (373)
                                                     ..|.+..+.....+.+..+|++++++..+..+.    .++++++++.++
T Consensus       346 -------------------------------~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~  394 (477)
T 3nks_A          346 -------------------------------IVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQ  394 (477)
T ss_dssp             -------------------------------EECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHHHH
T ss_pred             -------------------------------EEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHHHH
Confidence                                           011111111111011356788899887776654    469999999999


Q ss_pred             HHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhh
Q psy7654         274 KAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVN  353 (373)
Q Consensus       274 ~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~ve  353 (373)
                      ++|++++|.   .++|....+++|..      +++.+.+|+..   ....+...+..  ..++|++||+++.+.   .|+
T Consensus       395 ~~L~~~~g~---~~~~~~~~v~rw~~------a~p~~~~g~~~---~~~~~~~~l~~--~~~~l~l~G~~~~G~---gv~  457 (477)
T 3nks_A          395 EAAATQLGL---KEMPSHCLVHLHKN------CIPQYTLGHWQ---KLESARQFLTA--HRLPLTLAGASYEGV---AVN  457 (477)
T ss_dssp             HHHHHHHCC---CSCCSEEEEEEEEE------EEECCBTTHHH---HHHHHHHHHHH--TTCSEEECSTTTSCC---SHH
T ss_pred             HHHHHHhCC---CCCCcEEEEEEcCC------ccCCCCCCHHH---HHHHHHHHHHh--cCCCEEEEccCCCCC---cHH
Confidence            999999996   35788899999985      77888887642   22233222210  013799999998753   599


Q ss_pred             HHHHHHHHHHHHHHhhC
Q psy7654         354 GAVETGWREADRILKSD  370 (373)
Q Consensus       354 GA~~SG~~AA~~i~~~~  370 (373)
                      +|+.||++||++|++.-
T Consensus       458 ~a~~sg~~aA~~il~~~  474 (477)
T 3nks_A          458 DCIESGRQAAVSVLGTE  474 (477)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999999754

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.80  E-value=3.3e-20  Score=164.68  Aligned_cols=115  Identities=20%  Similarity=0.195  Sum_probs=100.2

Q ss_pred             ceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceE--EeccCCCCCccccccccccccCCccccchHh
Q psy7654         246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRV--FHSSWGTNKHFKGSYSIYTLTTDKMNASRHD  323 (373)
Q Consensus       246 ~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~--~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~  323 (373)
                      .+|++|++++.|.++..++++++++.++++|+++||.  +...+..+  ..++|.+|||++|+|+.+.||+..  ...+.
T Consensus        37 ~~L~~~~~g~~A~~~~~l~~~e~~~~~l~~L~~~~g~--~~~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~--~~~~~  112 (181)
T 2e1m_C           37 VVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGR--RIEVFYTGAGQTQSWLRDPYACGEAAVYTPHQMT--AFHLD  112 (181)
T ss_dssp             EEEEEEEEHHHHHHHTTSCTTTTHHHHHHHHHHHHCG--GGGGTEEEEEEEEESSSCTTTSSSEECCCTTHHH--HHHHH
T ss_pred             EEEEEEcCChHHHHHHcCCHHHHHHHHHHHHHHHhCC--CcHhhccCcceecccCCCCCCCCcccCcCCCchH--HHHHH
Confidence            4788899999999999999999999999999999985  34333367  899999999999999998898753  35678


Q ss_pred             hcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         324 LEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       324 l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      |.+|.+      |||||||+++. ++||||||++||+|||.+|++.+.
T Consensus       113 l~~p~g------rl~FAGe~ts~-~~g~~eGAl~SG~raA~~i~~~l~  153 (181)
T 2e1m_C          113 VVRPEG------PVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAPV  153 (181)
T ss_dssp             HHSCBT------TEEECSGGGTT-STTSHHHHHHHHHHHHHHHHTCCC
T ss_pred             HhCCCC------cEEEEEHHHcC-CccCHHHHHHHHHHHHHHHHHHhc
Confidence            888875      89999999996 899999999999999999998764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.80  E-value=9.4e-19  Score=173.16  Aligned_cols=261  Identities=11%  Similarity=0.042  Sum_probs=172.0

Q ss_pred             hhhhccCCchhhcchhhhhhhhc---cCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE
Q psy7654           8 QNSLDASDSWFETSAKRYNSFVT---HEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV   84 (373)
Q Consensus         8 ~~~~~~g~~~~~~S~~~~~~~~~---~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v   84 (373)
                      .+....|.+.+++|+..+...+.   ..|..  .+++||+++|+++|++.+.     ++|++|++|++|++|.. ++++|
T Consensus       158 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~gG~~~l~~~l~~~~~-----~~G~~i~~~~~V~~i~~-~~~~~  229 (425)
T 3ka7_A          158 FCGWALSLKSDEVPVEEVFEIIENMYRFGGT--GIPEGGCKGIIDALETVIS-----ANGGKIHTGQEVSKILI-ENGKA  229 (425)
T ss_dssp             HHHHHHSSCGGGSBHHHHHHHHHHHHHHCSC--EEETTSHHHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-ETTEE
T ss_pred             HHHHHhCCCcccchHHHHHHHHHHHHhcCCc--cccCCCHHHHHHHHHHHHH-----HcCCEEEECCceeEEEE-ECCEE
Confidence            34444577889999976654332   12222  2358999999999999987     67899999999999998 67777


Q ss_pred             E-EEeCCCcEEEcCEEEEcCCcccccccccccCCCC--CHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCC
Q psy7654          85 L-VTCADGSQYSADKVLITVSLGVFKSDLITFVPPL--PPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHD  161 (373)
Q Consensus        85 ~-v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L--p~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~  161 (373)
                      . |++. |+++.||+||+|+|+..+.++ +...+.+  |....+.++++.+++..+|.+.|++++|..    .+++++.+
T Consensus       230 ~gv~~~-g~~~~ad~VV~a~~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~----~~~~~~~~  303 (425)
T 3ka7_A          230 AGIIAD-DRIHDADLVISNLGHAATAVL-CSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGH----TGVLLTPY  303 (425)
T ss_dssp             EEEEET-TEEEECSEEEECSCHHHHHHH-TTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSCS----SSEEECCS
T ss_pred             EEEEEC-CEEEECCEEEECCCHHHHHHh-cCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccCc----CEEEECCC
Confidence            6 6664 778999999999999988762 2222334  777888899999999999999999987632    22222221


Q ss_pred             CCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec
Q psy7654         162 DKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT  241 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~  241 (373)
                      ..  ++                .+.                                           .+.+...+.. .
T Consensus       304 ~~--~~----------------~~~-------------------------------------------~~~s~~~p~~-a  321 (425)
T 3ka7_A          304 TR--RI----------------NGV-------------------------------------------NEVTQADPEL-A  321 (425)
T ss_dssp             SS--SE----------------EEE-------------------------------------------ECGGGTCGGG-S
T ss_pred             hh--hc----------------ceE-------------------------------------------EeccCCCCCc-C
Confidence            10  00                000                                           0111111111 1


Q ss_pred             CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccch
Q psy7654         242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASR  321 (373)
Q Consensus       242 ~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~  321 (373)
                      +.+..++..++.... ... .. +++.++.++++|++++|.  .  .+.-..+++|..      +++.+.+|+..    .
T Consensus       322 p~G~~~l~~~~~~~~-~~~-~~-~~~~~~~~~~~l~~~~p~--~--~~~~~~v~~~~~------~~P~~~~~~~~----~  384 (425)
T 3ka7_A          322 PPGKHLTMCHQYVAP-ENV-KN-LESEIEMGLEDLKEIFPG--K--RYEVLLIQSYHD------EWPVNRAASGT----D  384 (425)
T ss_dssp             CTTCEEEEEEEEECG-GGG-GG-HHHHHHHHHHHHHHHSTT--C--CEEEEEEEEEBT------TBCSBSSCTTC----C
T ss_pred             CCCCeEEEEEecccc-ccc-cc-hHHHHHHHHHHHHHhCCC--C--ceEEEEEEEECC------CccccccccCC----C
Confidence            334456655544322 111 12 245579999999999974  2  334456777875      56777777532    2


Q ss_pred             HhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHH
Q psy7654         322 HDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL  367 (373)
Q Consensus       322 ~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~  367 (373)
                      .....|+      ++||+|||++.+.+.-.|+||+.||.+||++|+
T Consensus       385 ~~~~~p~------~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~  424 (425)
T 3ka7_A          385 PGNETPF------SGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL  424 (425)
T ss_dssp             CCSBCSS------BTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCc------CCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence            2223343      379999999998766689999999999999986

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.72  E-value=4.5e-17  Score=164.81  Aligned_cols=259  Identities=14%  Similarity=0.163  Sum_probs=167.7

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCC
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPL  119 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L  119 (373)
                      .+||+++|+++|++.|.     +.|++|++|++|++|.. ++++  +++.+|+++.||+||+|+|+..+..  + +.   
T Consensus       217 ~~gG~~~l~~~l~~~l~-----~~g~~i~~~~~V~~I~~-~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~--~-l~---  282 (513)
T 4gde_A          217 ARGGTGGIWIAVANTLP-----KEKTRFGEKGKVTKVNA-NNKT--VTLQDGTTIGYKKLVSTMAVDFLAE--A-MN---  282 (513)
T ss_dssp             SSSHHHHHHHHHHHTSC-----GGGEEESGGGCEEEEET-TTTE--EEETTSCEEEEEEEEECSCHHHHHH--H-TT---
T ss_pred             ccCCHHHHHHHHHHHHH-----hcCeeeecceEEEEEEc-cCCE--EEEcCCCEEECCEEEECCCHHHHHH--h-cC---
Confidence            48999999999999998     67899999999999998 5655  4567899999999999999998876  2 22   


Q ss_pred             CHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCC
Q psy7654         120 PPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWW  199 (373)
Q Consensus       120 p~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  199 (373)
                      +.....+.+.+.|.++..|.|.++........+...+..++.+  .|+.   ++               .   + ...|.
T Consensus       283 ~~~~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~--~~f~---Ri---------------~---~-~~n~s  338 (513)
T 4gde_A          283 DQELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDN--CPFY---RA---------------T---I-FSNYS  338 (513)
T ss_dssp             CHHHHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTT--CSCS---EE---------------E---C-GGGTC
T ss_pred             chhhHhhhhcccCCceEEEEEEEeccccccccccceeeccCCC--Ccee---EE---------------E---e-cCCCC
Confidence            2445677889999999999999987654433222222222211  1110   00               0   0 01111


Q ss_pred             CCCC-CCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHH
Q psy7654         200 PDDV-RGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRF  278 (373)
Q Consensus       200 ~~~~-~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~  278 (373)
                      |.-. .+...+                 ....|.+..+.... +.....+.+++.+.....+..+++|++++.++++|.+
T Consensus       339 p~~~p~~~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~  400 (513)
T 4gde_A          339 PYNQPEASAAL-----------------PTMQLADGSRPQST-EAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVN  400 (513)
T ss_dssp             GGGSCCTTCCE-----------------ECCEETTSCCCSCC-SEECCCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHH
T ss_pred             cccCCCCCceE-----------------EEEEeccCCCcccc-cCCcceEEEEEecccchhccCCCHHHHHHHHHHHHHH
Confidence            1110 010000                 00111111111111 2223456777666555667889999999999999999


Q ss_pred             HhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCc-chhhHHHH
Q psy7654         279 FLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQY-GTVNGAVE  357 (373)
Q Consensus       279 ~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~-g~veGA~~  357 (373)
                      +.+.+ ..+++....+.+|.+      +|+.+..|+..   ..+.+...+..    ++||++|-.-...+. +.|++|+.
T Consensus       401 ~~~i~-~~~~i~~~~v~r~~~------ayP~y~~~~~~---~~~~~~~~l~~----~~l~~~GR~g~~~Y~~~n~D~a~~  466 (513)
T 4gde_A          401 TEMLK-PTDEIVSTYHRRFDH------GYPTPTLEREG---TLTQILPKLQD----KDIWSRGRFGSWRYEVGNQDHSFM  466 (513)
T ss_dssp             TTSSC-TTCEEEEEEEEEEEE------EEECCBTTHHH---HHHHHHHHHHH----TTEEECSTTTTCCGGGCSHHHHHH
T ss_pred             hcCCC-CccceEEEEEEECCC------eecccCHhHHH---HHHHHHHHHhh----cCcEEecCCcccCcCCCCHHHHHH
Confidence            98863 344567888899975      78888877643   23333322221    279999954333332 68999999


Q ss_pred             HHHHHHHHHHh
Q psy7654         358 TGWREADRILK  368 (373)
Q Consensus       358 SG~~AA~~i~~  368 (373)
                      ||..||++|++
T Consensus       467 ~g~~aa~~I~~  477 (513)
T 4gde_A          467 LGVEAVDNIVN  477 (513)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999999986

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.71  E-value=1.7e-16  Score=157.34  Aligned_cols=249  Identities=14%  Similarity=0.080  Sum_probs=156.4

Q ss_pred             hhhccCCchhhcchhhhhhhhcc---CCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE
Q psy7654           9 NSLDASDSWFETSAKRYNSFVTH---EGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL   85 (373)
Q Consensus         9 ~~~~~g~~~~~~S~~~~~~~~~~---~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~   85 (373)
                      +....|.+..++|+..+......   .+..  .+++||+++|+++|++.+.     ++|++|++|++|++|.. ++++| 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~gG~~~l~~~l~~~~~-----~~G~~i~~~~~V~~i~~-~~~~v-  222 (421)
T 3nrn_A          152 AGWADSVSLSDLTALELAKEIRAALRWGGP--GLIRGGCKAVIDELERIIM-----ENKGKILTRKEVVEINI-EEKKV-  222 (421)
T ss_dssp             HHHHHSSCGGGSBHHHHHHHHHHHHHHCSC--EEETTCHHHHHHHHHHHHH-----TTTCEEESSCCEEEEET-TTTEE-
T ss_pred             HHHhcCCCcccCCHHHHHHHHHHHhhcCCc--ceecCCHHHHHHHHHHHHH-----HCCCEEEcCCeEEEEEE-ECCEE-
Confidence            33445777889998766553321   1222  2358999999999999987     67899999999999998 78888 


Q ss_pred             EEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCC
Q psy7654          86 VTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKN  165 (373)
Q Consensus        86 v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~  165 (373)
                      |+ .+|+++.||+||+|+|+..+.+  +.-.+.+|....+.++++.+.+..+|.+.++++...    ..++++..+..  
T Consensus       223 V~-~~g~~~~ad~Vv~a~~~~~~~~--ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~----~~~~~~~~~~~--  293 (421)
T 3nrn_A          223 YT-RDNEEYSFDVAISNVGVRETVK--LIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRI----GNTIVFTPGLM--  293 (421)
T ss_dssp             EE-TTCCEEECSEEEECSCHHHHHH--HHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSCSS----CSSEEECTTSS--
T ss_pred             EE-eCCcEEEeCEEEECCCHHHHHH--hcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCccc----CCeEEEcCCcc--
Confidence            64 4667899999999999998876  211245777778889999999999999999987432    22223221100  


Q ss_pred             CCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCC
Q psy7654         166 PLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDP  245 (373)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~  245 (373)
                       +                .+                                           ..+.+...+.. .+.+.
T Consensus       294 -~----------------~~-------------------------------------------i~~~s~~~p~~-ap~G~  312 (421)
T 3nrn_A          294 -I----------------NG-------------------------------------------FNEPSALDKSL-AREGY  312 (421)
T ss_dssp             -S----------------CE-------------------------------------------EECGGGTCGGG-SCTTE
T ss_pred             -e----------------ee-------------------------------------------EeccCCCCCCc-CCCCc
Confidence             0                00                                           00000000001 12233


Q ss_pred             ceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhc
Q psy7654         246 LTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLE  325 (373)
Q Consensus       246 ~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~  325 (373)
                      .++.++..-      ...++++.++.++++|++++| .   .++  ..+++|..      +++.+.+....   ..+  .
T Consensus       313 ~~~~~~~~~------~~~~~~~~~~~~~~~L~~~~p-~---~~~--~~~~~~~~------~~p~~~~~~~~---~~~--~  369 (421)
T 3nrn_A          313 TLIMAHMAL------KNGNVKKAIEKGWEELLEIFP-E---GEP--LLAQVYRD------GNPVNRTRAGL---HIE--W  369 (421)
T ss_dssp             EEEEEEEEC------TTCCHHHHHHHHHHHHHHHCT-T---CEE--EEEEEC----------------------CCC--C
T ss_pred             eEEEEEEee------ccccHHHHHHHHHHHHHHHcC-C---CeE--EEeeeccC------CCCcccccCCC---CCC--C
Confidence            344444321      123445669999999999998 2   233  34566764      34443221100   011  1


Q ss_pred             ccccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHH
Q psy7654         326 APLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRI  366 (373)
Q Consensus       326 ~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i  366 (373)
                      .      . ++||+|||++.+.+.-.||||+.||.+||++|
T Consensus       370 ~------~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          370 P------L-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             C------C-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             C------C-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            2      2 48999999998753337799999999999998

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.68  E-value=4e-16  Score=158.29  Aligned_cols=266  Identities=13%  Similarity=0.119  Sum_probs=172.0

Q ss_pred             hccCCchhhcchhhhhhhhcc--------------C----Ccc-eeee-cCCcHHHHHHHHHHhCCCCCCCCCCceEEcC
Q psy7654          11 LDASDSWFETSAKRYNSFVTH--------------E----GCE-DTVW-KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLN   70 (373)
Q Consensus        11 ~~~g~~~~~~S~~~~~~~~~~--------------~----g~~-~~~~-~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln   70 (373)
                      -.+|.+.+++|+.++...+..              .    |.. .+.+ .+||+++|+++|++.+..       .+|++|
T Consensus       162 ~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~~-------~~i~~~  234 (484)
T 4dsg_A          162 KVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPS-------EKLTFN  234 (484)
T ss_dssp             HHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSCG-------GGEEEC
T ss_pred             hhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhhh-------CeEEEC
Confidence            445778999999875442210              0    111 1223 369999999999999962       379999


Q ss_pred             --CceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCC
Q psy7654          71 --KEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWP  148 (373)
Q Consensus        71 --~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~  148 (373)
                        ++|++|.. .+++|.  +.+|+++.||+||+|+|++.+..+.....+.+|+...++++.+.|.++.+|.+.|+.+.-.
T Consensus       235 ~~~~V~~I~~-~~~~v~--~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~  311 (484)
T 4dsg_A          235 SGFQAIAIDA-DAKTIT--FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPP  311 (484)
T ss_dssp             GGGCEEEEET-TTTEEE--ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCG
T ss_pred             CCceeEEEEe-cCCEEE--ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcc
Confidence              56999998 677664  4678889999999999999987721112345788888899999999999999999986321


Q ss_pred             CCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCC
Q psy7654         149 DDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDG  228 (373)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~  228 (373)
                      +..++..+++++.+.  ++.                     ..+.| ..|||.                           
T Consensus       312 ~~~~~~~i~vp~~~~--~~~---------------------ri~~~-s~~~p~---------------------------  340 (484)
T 4dsg_A          312 HLKTACWLYFPEDTS--PFY---------------------RATVF-SNYSKY---------------------------  340 (484)
T ss_dssp             GGTTCCEEECCSTTC--SCS---------------------EEECG-GGTCGG---------------------------
T ss_pred             cCCCCeEEEEEcCCC--eEE---------------------EEEee-cCCCcc---------------------------
Confidence            112344444332221  010                     00000 011110                           


Q ss_pred             CcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCC-ceEEeccCCCCCcccccc
Q psy7654         229 APWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEP-SRVFHSSWGTNKHFKGSY  307 (373)
Q Consensus       229 ~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~-~~~~~~~W~~dp~~~G~~  307 (373)
                                 ..+++..+++..+...   ....++++++++.++++|.++.+.+  ..++ ....+++|..      +|
T Consensus       341 -----------~ap~g~~~l~~e~~~~---~~~~~~d~~l~~~a~~~L~~~~~~~--~~~~~~~~~v~r~~~------~y  398 (484)
T 4dsg_A          341 -----------NVPEGHWSLMLEVSES---KYKPVNHSTLIEDCIVGCLASNLLL--PEDLLVSKWHYRIEK------GY  398 (484)
T ss_dssp             -----------GSCTTEEEEEEEEEEB---TTBCCCTTSHHHHHHHHHHHTTSCC--TTCCEEEEEEEEEEE------EE
T ss_pred             -----------cCCCCeEEEEEEEecC---cCCcCCHHHHHHHHHHHHHHcCCCC--ccceEEEEEEEEeCc------cc
Confidence                       0122233555544322   2446799999999999999987642  1233 3456788874      89


Q ss_pred             ccccccCCccccchHhhcccccCCCCCceEEEeccccCCCCc--chhhHHHHHHHHHHHHHH
Q psy7654         308 SIYTLTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQY--GTVNGAVETGWREADRIL  367 (373)
Q Consensus       308 ~~~~~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~--g~veGA~~SG~~AA~~i~  367 (373)
                      +.+.+|+..   ..+.+...+..   . +|+++|..-... +  .-|+.|+.||.+||++|+
T Consensus       399 P~y~~~~~~---~~~~~~~~l~~---~-~l~~~Gr~g~~~-y~v~~~d~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          399 PTPFIGRNN---LLEKAQPELMS---R-CIYSRGRFGAWR-YEVGNQDHSFMQGVEAIDHVL  452 (484)
T ss_dssp             ECCBTTHHH---HHHHHHHHHHH---T-TEEECSTTTTCC-GGGCSHHHHHHHHHHHHHHHT
T ss_pred             cCCCccHHH---HHHHHHHHHHh---C-CcEeecCCcccc-cCCCChHHHHHHHHHHHHHHH
Confidence            999888643   23333333321   1 699999964443 3  359999999999999998

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.61  E-value=2.1e-15  Score=152.40  Aligned_cols=132  Identities=17%  Similarity=0.258  Sum_probs=77.7

Q ss_pred             hhhhhhccCCchhhcchhhhhhhhccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE
Q psy7654           6 KAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL   85 (373)
Q Consensus         6 ~~~~~~~~g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~   85 (373)
                      .+.+.+.++.+....++..++.+....++.  .+++||+++|+++|++.+.     ++|++|++|++|++|.. +++++.
T Consensus       184 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~G~--~~p~GG~~~l~~aL~~~~~-----~~Gg~I~~~~~V~~I~~-~~~~~~  255 (501)
T 4dgk_A          184 SFHSLLVGGNPFATSSIYTLIHALEREWGV--WFPRGGTGALVQGMIKLFQ-----DLGGEVVLNARVSHMET-TGNKIE  255 (501)
T ss_dssp             HHHHHHHHSCC--CCCTHHHHHHHHSCCCE--EEETTHHHHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-ETTEEE
T ss_pred             hhhhcccCCCcchhhhhhhhhhhhhccCCe--EEeCCCCcchHHHHHHHHH-----HhCCceeeecceeEEEe-eCCeEE
Confidence            344455555554444444444444333322  2469999999999999997     78999999999999999 777765


Q ss_pred             -EEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcc-eeEEEEEcCCCC
Q psy7654          86 -VTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGT-VDKVFVRFPQKW  146 (373)
Q Consensus        86 -v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~-~~kv~l~~~~~~  146 (373)
                       |++.+|+++.||+||+++++..+...++.- .+++....+.++...+++ ..++++.++.+.
T Consensus       256 gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~  317 (501)
T 4dgk_A          256 AVHLEDGRRFLTQAVASNADVVHTYRDLLSQ-HPAAVKQSNKLQTKRMSNSLFVLYFGLNHHH  317 (501)
T ss_dssp             EEEETTSCEEECSCEEECCC----------------------------CCEEEEEEEEESSCC
T ss_pred             EEEecCCcEEEcCEEEECCCHHHHHHHhccc-cccchhhhhhhhccccCCceeEEEecccCCc
Confidence             889999999999999999887654422222 224444455666676644 667888888764

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.57  E-value=3e-14  Score=140.97  Aligned_cols=243  Identities=12%  Similarity=0.121  Sum_probs=148.3

Q ss_pred             chhhcchhhhhhhhcc-------CCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe
Q psy7654          16 SWFETSAKRYNSFVTH-------EGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC   88 (373)
Q Consensus        16 ~~~~~S~~~~~~~~~~-------~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~   88 (373)
                      +.+++|+..++.|...       .|...  ..+||+++|+++|++.+.        .+|++|++|++|.. ++++|.|++
T Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~l~~~l~~~l~--------~~v~~~~~V~~i~~-~~~~v~v~~  240 (424)
T 2b9w_A          172 HFDNVPAAYVLKYLDFVTMMSFAKGDLW--TWADGTQAMFEHLNATLE--------HPAERNVDITRITR-EDGKVHIHT  240 (424)
T ss_dssp             CTTTSBHHHHHHHSCHHHHHHHHHTCCB--CCTTCHHHHHHHHHHHSS--------SCCBCSCCEEEEEC-CTTCEEEEE
T ss_pred             ChHhcCHHHHHHhhhHhhhhcccCCceE--EeCChHHHHHHHHHHhhc--------ceEEcCCEEEEEEE-ECCEEEEEE
Confidence            3578888776655431       22221  248999999999999886        57999999999998 777899998


Q ss_pred             CCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCccee-EEEEEcCCCCCCCCCCceeEEecCCCCCCCC
Q psy7654          89 ADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVD-KVFVRFPQKWWPDDIRGYNFFWTHDDKKNPL  167 (373)
Q Consensus        89 ~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~-kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~  167 (373)
                      .+| ++.||+||+|+|+..+..    +.|++|.++ +.+..+.+.++. ++.+...-+.|       ..+.+.....   
T Consensus       241 ~~g-~~~ad~Vv~a~~~~~~~~----~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---  304 (424)
T 2b9w_A          241 TDW-DRESDVLVLTVPLEKFLD----YSDADDDER-EYFSKIIHQQYMVDACLVKEYPTI-------SGYVPDNMRP---  304 (424)
T ss_dssp             SSC-EEEESEEEECSCHHHHTT----SBCCCHHHH-HHHTTCEEEEEEEEEEEESSCCSS-------EEECGGGGSG---
T ss_pred             CCC-eEEcCEEEECCCHHHHhh----ccCCCHHHH-HHHhcCCcceeEEEEEEeccCCcc-------cccccCCCCC---
Confidence            888 589999999999997754    335555543 356777776643 33333222211       1121110000   


Q ss_pred             cccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeec-CCCCc
Q psy7654         168 FKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLT-TEDPL  246 (373)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~-~~~~~  246 (373)
                                                        ...|.                      ..|     +.... .+...
T Consensus       305 ----------------------------------~~~g~----------------------~~~-----~~~~~~~~~~~  323 (424)
T 2b9w_A          305 ----------------------------------ERLGH----------------------VMV-----YYHRWADDPHQ  323 (424)
T ss_dssp             ----------------------------------GGTTS----------------------CCE-----EEECCTTCTTS
T ss_pred             ----------------------------------cCCCc----------------------ceE-----EeeecCCCCce
Confidence                                              00010                      011     11111 22235


Q ss_pred             eEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcc
Q psy7654         247 TFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEA  326 (373)
Q Consensus       247 ~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~  326 (373)
                      ++++|+.+.. ..+..++++++++.+++.|++ ++.  +.+.+  +...+|...|...  -..+..|+      ...+..
T Consensus       324 ~l~~~~~~~~-~~~~~~~~~~~~~~v~~~l~~-l~~--~~~~~--~~~~~w~~~p~~~--~~~~~~G~------~~~~~~  389 (424)
T 2b9w_A          324 IITTYLLRNH-PDYADKTQEECRQMVLDDMET-FGH--PVEKI--IEEQTWYYFPHVS--SEDYKAGW------YEKVEG  389 (424)
T ss_dssp             CEEEEEECCB-TTBCCCCHHHHHHHHHHHHHH-TTC--CEEEE--EEEEEEEEEEECC--HHHHHTTH------HHHHHH
T ss_pred             EEEEEeccCC-CcccccChHHHHHHHHHHHHH-cCC--ccccc--ccccceeeeeccC--HHHHhccH------HHHHHH
Confidence            7788887643 456678899999999999998 664  21121  2234665322110  01111221      122222


Q ss_pred             cccCCCCCceEEEeccccCCCCcchhhHHHHHHHHHHHHHH
Q psy7654         327 PLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRIL  367 (373)
Q Consensus       327 p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~  367 (373)
                      .    ++.+++||||+++.   .|++|+|++||.+||++|+
T Consensus       390 ~----~~~~~l~~aG~~~~---~g~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          390 M----QGRRNTFYAGEIMS---FGNFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             T----TTGGGEEECSGGGS---CSSHHHHHHHHHHHHHHHT
T ss_pred             H----hCCCCceEeccccc---cccHHHHHHHHHHHHHHhc
Confidence            1    23358999999886   4899999999999999986

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.40  E-value=6.3e-15  Score=123.17  Aligned_cols=106  Identities=13%  Similarity=0.224  Sum_probs=70.0

Q ss_pred             cEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccc
Q psy7654          92 SQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDT  171 (373)
Q Consensus        92 ~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
                      ++++||+||||+|+++++.  |.|+|+||..+.+++++++|++..|+++.|+++||+++  +..+.              
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~--~~~gd--------------   65 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFT--EADWK--------------   65 (130)
T ss_dssp             EEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCC--HHHHH--------------
T ss_pred             eEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCC--Ccccc--------------
Confidence            4789999999999999997  99999999999999999999999999999999999874  11000              


Q ss_pred             cccCCCCccccccccccceeecCCCCCCCCCCCCCCccccCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEE
Q psy7654         172 AVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGW  251 (373)
Q Consensus       172 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~  251 (373)
                                                                                   .     ...++.++++++|
T Consensus        66 -------------------------------------------------------------~-----s~~~~~pg~l~~f   79 (130)
T 2e1m_B           66 -------------------------------------------------------------R-----ELDAIAPGLYDYY   79 (130)
T ss_dssp             -------------------------------------------------------------H-----HHHHHSTTHHHHH
T ss_pred             -------------------------------------------------------------c-----cCCCCCCeEEEEe
Confidence                                                                         0     0001224588889


Q ss_pred             e-cchhhHHhhcCCHHHHHHHHHHHHHHHhCC
Q psy7654         252 I-SGASARFMETLSDEQIKTESMKAFRFFLGA  282 (373)
Q Consensus       252 ~-~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~  282 (373)
                      + +|++|.++..+++ +..+.++..|.++|+.
T Consensus        80 ~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~  110 (130)
T 2e1m_B           80 QQWGEDDAEAALALP-QSVRNLPTGLLGAHPS  110 (130)
T ss_dssp             HHHCCCSCCCC---------------------
T ss_pred             cccCHHHHHHhcCCH-HHHHHHHHHHHHhCCC
Confidence            9 5999999999977 5667888899999983

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.82  E-value=8.1e-10  Score=109.01  Aligned_cols=106  Identities=15%  Similarity=0.036  Sum_probs=75.6

Q ss_pred             hhhccCCchhhcchhhhhhh---hccC-Ccc--ee-eecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC
Q psy7654           9 NSLDASDSWFETSAKRYNSF---VTHE-GCE--DT-VWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA   81 (373)
Q Consensus         9 ~~~~~g~~~~~~S~~~~~~~---~~~~-g~~--~~-~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~   81 (373)
                      +.-.+|.+.+++|+..+...   .... +..  .. .+++||+++|+++|++++        |++|++|++|++|+. . 
T Consensus       162 ~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~--------g~~I~l~~~V~~I~~-~-  231 (399)
T 1v0j_A          162 TAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADH--------RIEVRLNTDWFDVRG-Q-  231 (399)
T ss_dssp             HHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCST--------TEEEECSCCHHHHHH-H-
T ss_pred             HHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHHHhcC--------CeEEEECCchhhhhh-h-
Confidence            33456788999999886321   1111 111  12 146899999999998754        479999999999976 2 


Q ss_pred             CcEEEEeCCCcEE-EcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCC
Q psy7654          82 NGVLVTCADGSQY-SADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWW  147 (373)
Q Consensus        82 ~~v~v~~~~G~~~-~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W  147 (373)
                        |     +  ++ .||+||+|+|+..+..  +            .+..++|.++..+.+.++.+.+
T Consensus       232 --v-----~--~~~~aD~VI~t~p~~~l~~--~------------~l~~l~y~s~~~~~~~~~~~~~  275 (399)
T 1v0j_A          232 --L-----R--PGSPAAPVVYTGPLDRYFD--Y------------AEGRLGWRTLDFEVEVLPIGDF  275 (399)
T ss_dssp             --H-----T--TTSTTCCEEECSCHHHHTT--T------------TTCCCCEEEEEEEEEEESSSCS
T ss_pred             --h-----h--hcccCCEEEECCcHHHHHh--h------------hhCCCCcceEEEEEEEEccccC
Confidence              2     1  34 6999999999998765  2            2457889988888988887643

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.21  E-value=1.7e-06  Score=84.22  Aligned_cols=107  Identities=14%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             hhhhhhhccCCchhhcchhhhhhh---hccC-C--ccee-eecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEE
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNSF---VTHE-G--CEDT-VWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKIN   77 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~~---~~~~-g--~~~~-~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~   77 (373)
                      ++-.+.-.+|.+.+++|+..+...   ...+ +  .... .+++||+++|+++|++.          ++|++|++|++|+
T Consensus       148 ~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~g----------~~i~l~~~V~~i~  217 (367)
T 1i8t_A          148 IKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEG----------VDVKLGIDFLKDK  217 (367)
T ss_dssp             THHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHTT----------SEEECSCCGGGSH
T ss_pred             HHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhcC----------CEEEeCCceeeec
Confidence            333344555888999998876321   1111 1  1111 24689999999999972          5899999999886


Q ss_pred             ecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCC
Q psy7654          78 WEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWW  147 (373)
Q Consensus        78 ~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W  147 (373)
                      .    .|        +..+|+||+|+|+..+..  +            .+..+.|.++.-+.+.++.+..
T Consensus       218 ~----~v--------~~~~D~VV~a~p~~~~~~--~------------~l~~l~y~s~~~v~~~~d~~~~  261 (367)
T 1i8t_A          218 D----SL--------ASKAHRIIYTGPIDQYFD--Y------------RFGALEYRSLKFETERHEFPNF  261 (367)
T ss_dssp             H----HH--------HTTEEEEEECSCHHHHTT--T------------TTCCCCEEEEEEEEEEESSSCS
T ss_pred             h----hh--------hccCCEEEEeccHHHHHH--H------------hhCCCCCceEEEEEEEeccccC
Confidence            4    22        135899999999987654  1            2456889999999999987643

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.19  E-value=3.2e-06  Score=82.77  Aligned_cols=98  Identities=17%  Similarity=0.093  Sum_probs=69.8

Q ss_pred             hhhhccCCchhhcchhhhhhh---hccC----CcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceE-EEEec
Q psy7654           8 QNSLDASDSWFETSAKRYNSF---VTHE----GCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVT-KINWE   79 (373)
Q Consensus         8 ~~~~~~g~~~~~~S~~~~~~~---~~~~----g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~-~I~~~   79 (373)
                      .+.-.+|.+.+++|+......   ....    .+....+++||+++|+++|+++.        |++|++|++|+ +|+. 
T Consensus       155 ~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~--------g~~I~l~~~V~~~i~~-  225 (384)
T 2bi7_A          155 YTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHE--------NIKVDLQREFIVEERT-  225 (384)
T ss_dssp             HHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCST--------TEEEEESCCCCGGGGG-
T ss_pred             HHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhcC--------CCEEEECCeeehhhhc-
Confidence            344556888999998875211   1111    11111146899999999999743        47999999999 8854 


Q ss_pred             CCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcC
Q psy7654          80 DANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFP  143 (373)
Q Consensus        80 ~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~  143 (373)
                                     .+|+||+|+|+..+..  +            .+..+.|.++.-+.+.++
T Consensus       226 ---------------~~d~VI~a~p~~~~~~--~------------~lg~l~y~s~~~v~~~~d  260 (384)
T 2bi7_A          226 ---------------HYDHVFYSGPLDAFYG--Y------------QYGRLGYRTLDFKKFTYQ  260 (384)
T ss_dssp             ---------------GSSEEEECSCHHHHTT--T------------TTCCCCEEEEEEEEEEEE
T ss_pred             ---------------cCCEEEEcCCHHHHHH--h------------hcCCCCcceEEEEEEEeC
Confidence                           2899999999998765  2            134678888888888886

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.73  E-value=2.3e-05  Score=77.78  Aligned_cols=65  Identities=17%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             eeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          37 TVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        37 ~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+++||+++|+++|++.+.     ++|++|++|++|++|.. .++++.....+|+++.||+||+|+|+..
T Consensus       226 ~~~p~gG~~~l~~~l~~~~~-----~~G~~i~~~~~V~~I~~-~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          226 YLYPLYGLGELPQGFARLSA-----IYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             EEEETTCTTHHHHHHHHHHH-----HHTCCCBCSCCCCEEEE-ETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             EEEeCcCHHHHHHHHHHHHH-----HcCCEEECCCEEEEEEE-eCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            34579999999999998876     66899999999999998 6777663334777899999999999874

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.49  E-value=0.0001  Score=74.28  Aligned_cols=68  Identities=24%  Similarity=0.319  Sum_probs=54.5

Q ss_pred             CcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCc
Q psy7654          33 GCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        33 g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      |...+.+++||++.|+++|++.+.     .+|++|+++++|++|..+.+++ +.|.+.+|+++.||+||++...
T Consensus       244 g~s~~~yp~gG~~~L~~aL~r~~~-----~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~  312 (475)
T 3p1w_A          244 GKSPFIYPLYGLGGIPEGFSRMCA-----INGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY  312 (475)
T ss_dssp             SSCSEEEETTCTTHHHHHHHHHHH-----HC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred             CCCceEEECCCHHHHHHHHHHHHH-----HcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence            444556789999999999999887     7789999999999999723344 5688888888999999999854

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.47  E-value=0.00045  Score=60.76  Aligned_cols=93  Identities=22%  Similarity=0.195  Sum_probs=61.7

Q ss_pred             hhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccccccCCccccchHhhcccccCCCCCc
Q psy7654         256 SARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIYTLTTDKMNASRHDLEAPLSNGQGKQ  335 (373)
Q Consensus       256 ~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~~~l~~p~~~~~~~~  335 (373)
                      ...........+..+.....+....+.  ..+.+.....++|..      +++.....       ...+..+.      +
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~w~~------a~~~~~~~-------~~~~~~~~------~  295 (336)
T 3kkj_A          237 WSRQNLDASREQVIEHLHGAFAELIDC--TMPAPVFSLAHRWLY------ARPAGAHE-------WGALSDAD------L  295 (336)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHTTCSS--CCCCCSEEEEEEEEE------EEESSCCC-------CSSEEETT------T
T ss_pred             cccccccccchhhhhhhhhhhhhhccC--CcCcchheeccceee------cccccccC-------ccceeeCC------C
Confidence            333444556667777777777777765  456788888888852      12111110       01112122      3


Q ss_pred             eEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         336 VLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       336 ~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      |||+|||++.+   +.|++|+.||..||+.|++.|+.
T Consensus       296 ~v~l~GDa~~g---~gv~~A~~sG~~aA~~I~~~L~~  329 (336)
T 3kkj_A          296 GIYVCGDWCLS---GRVEGAWLSGQEAARRLLEHLQL  329 (336)
T ss_dssp             TEEECCGGGTT---SSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEecccCC---cCHHHHHHHHHHHHHHHHHHhhc
Confidence            89999999875   36999999999999999998864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.40  E-value=0.00041  Score=72.24  Aligned_cols=88  Identities=10%  Similarity=0.071  Sum_probs=65.9

Q ss_pred             eeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC--CcEE-EEeCCCcEEEcCEEEEcCCccccccccc
Q psy7654          37 TVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA--NGVL-VTCADGSQYSADKVLITVSLGVFKSDLI  113 (373)
Q Consensus        37 ~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~--~~v~-v~~~~G~~~~ad~VIvtiP~~~l~~~~i  113 (373)
                      ..+++||++.|+++|++.+.     ..|++|+++++|.+|.. ++  +++. |...+|+++.||+||+  .+..+..   
T Consensus       370 ~~yp~GG~g~L~qaL~r~~~-----~~Gg~i~l~~~V~~I~~-~~~~g~v~gV~~~~Ge~i~A~~VVs--~~~~lp~---  438 (650)
T 1vg0_A          370 FLFPLYGQGELPQCFCRMCA-----VFGGIYCLRHSVQCLVV-DKESRKCKAVIDQFGQRIISKHFII--EDSYLSE---  438 (650)
T ss_dssp             EEEETTCTTHHHHHHHHHHH-----HTTCEEESSCCEEEEEE-ETTTCCEEEEEETTSCEEECSEEEE--EGGGBCT---
T ss_pred             eEEeCCchhHHHHHHHHHHH-----HcCCEEEeCCEeeEEEE-eCCCCeEEEEEeCCCCEEEcCEEEE--ChhhcCH---
Confidence            44679999999999998876     78999999999999988 44  5553 5567799999999998  2222221   


Q ss_pred             ccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCC
Q psy7654         114 TFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKW  146 (373)
Q Consensus       114 ~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~  146 (373)
                          .+       .+++.++.+.++++.++++.
T Consensus       439 ----~~-------~~~~~~~~v~R~i~i~~~pi  460 (650)
T 1vg0_A          439 ----NT-------CSRVQYRQISRAVLITDGSV  460 (650)
T ss_dssp             ----TT-------TTTCCCEEEEEEEEEESSCS
T ss_pred             ----hH-------hccccccceEEEEEEecCCC
Confidence                11       12235678899999998874

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.26  E-value=0.00016  Score=72.07  Aligned_cols=61  Identities=11%  Similarity=0.159  Sum_probs=52.1

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC--CCcE-EEEeCCCcEEEcCEEEEcCCcc
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED--ANGV-LVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~--~~~v-~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      +++||+++|+++|++.+.     ++|++|++|++|++|.. .  ++++ .|.+ +|+++.||+||+|+++.
T Consensus       236 ~p~gG~~~l~~al~~~~~-----~~G~~i~~~~~V~~i~~-~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          236 YPMYGLGELPQGFARLSA-----IYGGTYMLDTPIDEVLY-KKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             EETTCTTHHHHHHHHHHH-----HTTCEEECSCCCCEEEE-ETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             eeCCCHHHHHHHHHHHHH-----HcCCEEECCCEEEEEEE-ECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            468999999999999886     67899999999999998 5  5664 4666 57789999999999886

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.85  E-value=0.0012  Score=64.31  Aligned_cols=78  Identities=9%  Similarity=0.015  Sum_probs=46.6

Q ss_pred             hhcchhhhhhhh-ccCCcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEc
Q psy7654          18 FETSAKRYNSFV-THEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSA   96 (373)
Q Consensus        18 ~~~S~~~~~~~~-~~~g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~a   96 (373)
                      .++|+..++.+. ..........++||+++|+++|++.+.        .+|++|++|++|.+ .++++.+.+.+......
T Consensus       292 ~~~s~l~~l~~~~~~~~~~~~~~i~GG~~~l~~~l~~~l~--------~~i~l~~~V~~I~~-~~~gv~v~~~~~~~~~g  362 (376)
T 2e1m_A          292 LHLAFFHSFLGRSDIDPRATYWEIEGGSRMLPETLAKDLR--------DQIVMGQRMVRLEY-YDPGRDGHHGELTGPGG  362 (376)
T ss_dssp             TTSBHHHHHHHCSCSCTTCCEEEETTCTTHHHHHHHHHGG--------GTEECSEEEEEEEE-CCCC-------------
T ss_pred             chhhHHHHHHHhhhhccCCceEEECCcHHHHHHHHHHhcC--------CcEEecCeEEEEEE-CCCceEEEeCCCcCCCC
Confidence            467766666543 122222222358999999999999986        58999999999999 77777666544334456


Q ss_pred             CEEEEcCC
Q psy7654          97 DKVLITVS  104 (373)
Q Consensus        97 d~VIvtiP  104 (373)
                      -+|++.+-
T Consensus       363 ~~~~~~~~  370 (376)
T 2e1m_A          363 PAVAIQTV  370 (376)
T ss_dssp             CCEEEEEE
T ss_pred             CeeEEEec
Confidence            67776653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=96.84  E-value=0.00053  Score=67.42  Aligned_cols=108  Identities=12%  Similarity=0.058  Sum_probs=74.3

Q ss_pred             hhhhhhhccCCchhhcchhhhhhhh---ccCC----cceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEE
Q psy7654           5 GKAQNSLDASDSWFETSAKRYNSFV---THEG----CEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKIN   77 (373)
Q Consensus         5 ~~~~~~~~~g~~~~~~S~~~~~~~~---~~~g----~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~   77 (373)
                      ++-.+.-.+|.+.+++|+.++...-   ..+.    +....+++||+++|+++|+++.        |++|++|++|+++ 
T Consensus       176 ~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~~--------g~~V~l~~~v~~~-  246 (397)
T 3hdq_A          176 FRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSSP--------NIKVMLNTDYREI-  246 (397)
T ss_dssp             THHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCST--------TEEEEESCCGGGT-
T ss_pred             HHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHHhcc--------CCEEEECCeEEec-
Confidence            3444445668889999998765321   1110    1112246999999999997643        5899999999833 


Q ss_pred             ecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHhcCCCcceeEEEEEcCCCCCC
Q psy7654          78 WEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWP  148 (373)
Q Consensus        78 ~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~W~  148 (373)
                                   +.++.+|+||+|+|+..+-.    .          .+..+.|.++.-+.+.++.+.+.
T Consensus       247 -------------~~~~~~d~vI~T~P~d~~~~----~----------~~g~L~yrsl~~~~~~~~~~~~~  290 (397)
T 3hdq_A          247 -------------ADFIPFQHMIYTGPVDAFFD----F----------CYGKLPYRSLEFRHETHDTEQLL  290 (397)
T ss_dssp             -------------TTTSCEEEEEECSCHHHHTT----T----------TTCCCCEEEEEEEEEEESSSCSC
T ss_pred             -------------cccccCCEEEEcCCHHHHHH----H----------hcCCCCCceEEEEEEEeccccCC
Confidence                         23457899999999987633    1          24567888999999999876443

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=95.79  E-value=0.011  Score=57.92  Aligned_cols=59  Identities=19%  Similarity=0.305  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCC---ceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCcccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNK---EVTKINWEDANGVL-VTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~---~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ...++++|.+.+.     ++|++|++++   +|++|.. ++++|. |.+.+|+++.||+||+|+-...-
T Consensus       160 ~~~~~~~L~~~a~-----~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          160 ARNALVAAAREAQ-----RMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHH-----hcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            5688888888776     6789999999   9999998 677887 99999888999999999988753

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=95.78  E-value=0.0073  Score=57.43  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..++++|.+.+.     ++|++|+++++|++|.. ++++|.|++.+| ++.||+||+|+-...
T Consensus       154 ~~~~~~l~~~a~-----~~Gv~i~~~~~V~~i~~-~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          154 DALHQGYLRGIR-----RNQGQVLCNHEALEIRR-VDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEESSCCCCEEEE-ETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCCEEEEEEE-eCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            788888888776     67899999999999998 677899999888 899999999998864

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=95.46  E-value=0.017  Score=54.46  Aligned_cols=58  Identities=9%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCC--cEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADG--SQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G--~~~~ad~VIvtiP~~~  107 (373)
                      ...+.++|.+.+.     +.|++|+++++|++|.. ++++ +.|.+.+|  .++.||+||+|+-...
T Consensus       149 ~~~~~~~l~~~~~-----~~Gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAE-----SDGAQLVFHTPLIAGRV-RPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-CTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHH-----HCCCEEECCCEEEEEEE-cCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            4678888888776     67899999999999998 5554 88888887  4789999999998864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.35  E-value=0.018  Score=60.15  Aligned_cols=57  Identities=11%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..++++|.+.+.     ++|++|+++++|++|.. ++++|.|.+.+|.++.||+||+|+-...
T Consensus       417 ~~l~~aL~~~a~-----~~Gv~i~~~t~V~~l~~-~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          417 AELTRNVLELAQ-----QQGLQIYYQYQLQNFSR-KDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEESCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHH-----hCCCEEEeCCeeeEEEE-eCCeEEEEECCCCEEECCEEEECCCcch
Confidence            788888888776     56899999999999999 7788999998888899999999998764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.11  E-value=0.022  Score=59.66  Aligned_cols=57  Identities=9%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc-EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~-~~~ad~VIvtiP~~~  107 (373)
                      ..++++|.+.+.     ++|++|+++++|++|.. ++++|.|.+.+|. ++.||+||+|+-...
T Consensus       412 ~~l~~aL~~~a~-----~~Gv~i~~~t~V~~l~~-~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          412 SDLTHALMMLAQ-----QNGMTCHYQHELQRLKR-IDSQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEESCCEEEEEE-CSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHH-----hCCCEEEeCCeEeEEEE-eCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence            788888888776     56899999999999999 7778999998887 899999999998874

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=94.99  E-value=0.026  Score=55.48  Aligned_cols=62  Identities=18%  Similarity=0.352  Sum_probs=52.7

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ++......+.+.|.+.+.     +.|++|+++++|++|.. +++++.|.+.+| ++.||+||+|+-...
T Consensus       126 ~~~~~~~~l~~~L~~~l~-----~~Gv~i~~~~~V~~i~~-~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          126 FCDHSAKDIIRMLMAEMK-----EAGVQLRLETSIGEVER-TASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             EESSCHHHHHHHHHHHHH-----HHTCEEECSCCEEEEEE-ETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             eeCCCHHHHHHHHHHHHH-----HCCCEEEECCEEEEEEE-eCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            345567789999988876     56799999999999998 777899999888 899999999988765

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=94.87  E-value=0.03  Score=53.08  Aligned_cols=56  Identities=30%  Similarity=0.429  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.++|.+.+.     +.|++|+.+++|++|.. ++++|.|++.+| ++.||+||+|+....
T Consensus       149 ~~l~~~l~~~~~-----~~G~~i~~~~~V~~i~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          149 ELAIKTWIQLAK-----EAGCAQLFNCPVTAIRH-DDDGVTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-CSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCCEEEEEEE-cCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence            477888887765     56799999999999998 677788988887 599999999998865

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.77  E-value=0.038  Score=52.65  Aligned_cols=57  Identities=18%  Similarity=0.113  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...+.++|.+.+.     ++|++|+.+++|++|.. ++++|. |++.+| ++.||+||+|+-...
T Consensus       148 ~~~l~~~l~~~~~-----~~Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAK-----EYGAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHH-----HCCCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            3677888887775     56899999999999998 677887 888877 899999999998764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=94.49  E-value=0.043  Score=54.15  Aligned_cols=59  Identities=25%  Similarity=0.345  Sum_probs=49.4

Q ss_pred             cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ....+.+.|.+.+.     +.|++|+++++|++|.. ++++ +.|.+.+|+++.||.||+|+-...
T Consensus       132 ~~~~l~~~L~~~~~-----~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          132 KAQSVVDALLTRLK-----DLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             CHHHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             CHHHHHHHHHHHHH-----HCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            46788899988876     56899999999999998 5666 778888887799999999987654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=94.45  E-value=0.03  Score=53.36  Aligned_cols=56  Identities=18%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++|+++++|++|.. .+++|.|.+.+| ++.+|.||+|+....
T Consensus       164 ~~~~~~l~~~~~-----~~g~~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          164 YFVCKAYVKAAK-----MLGAEIFEHTPVLHVER-DGEALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEETTCCCCEEEC-SSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCCcEEEEEE-ECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence            678888888776     56799999999999998 677888888777 899999999998853

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=94.42  E-value=0.041  Score=52.44  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.++|.+.+.     +.|++|+.+++|++|+. ++++|.|.+.+| ++.||.||+|+-...
T Consensus       150 ~~~~~~l~~~~~-----~~Gv~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAE-----ARGAKVLTHTRVEDFDI-SPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-CSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCcEEEEEEe-cCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            678888888776     56899999999999998 677788888776 799999999998764

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=94.36  E-value=0.044  Score=52.65  Aligned_cols=55  Identities=31%  Similarity=0.363  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.++|.+.+.     +.|++|+++++|++|.. ++++|.|.+.+| ++.||.||+|+-..
T Consensus       153 ~~~~~~l~~~a~-----~~Gv~i~~~~~V~~i~~-~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          153 RGTLAALFTLAQ-----AAGATLRAGETVTELVP-DADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEESCCEEEEEE-ETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHH-----HcCCEEECCCEEEEEEE-cCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            567778877665     56789999999999998 677888888776 79999999999765

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=94.30  E-value=0.067  Score=51.43  Aligned_cols=58  Identities=14%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCC-CceEEcCCceEEEEecCCCcE--EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDL-GKKLLLNKEVTKINWEDANGV--LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~-G~~I~ln~~V~~I~~~~~~~v--~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      -..|.+.|.+.+.     +. |++|+++++|++|.. ++++|  .|++.+|+++++|.||.|.-...
T Consensus       106 r~~l~~~L~~~~~-----~~~gv~i~~~~~v~~i~~-~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          106 CESLRRLVLEKID-----GEATVEMLFETRIEAVQR-DERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             HHHHHHHHHHHHT-----TCTTEEEECSCCEEEEEE-CTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhh-----hcCCcEEEcCCEEEEEEE-cCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            3577888888876     45 789999999999998 77788  89988888999999999998764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=93.98  E-value=0.058  Score=45.76  Aligned_cols=54  Identities=15%  Similarity=0.150  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+++++ +|++|+. +++++.|++.+| ++.+|.||+|+-..
T Consensus        56 ~~~~~~l~~~~~-----~~gv~v~~~-~v~~i~~-~~~~~~v~~~~g-~i~ad~vI~A~G~~  109 (180)
T 2ywl_A           56 EELLRRLEAHAR-----RYGAEVRPG-VVKGVRD-MGGVFEVETEEG-VEKAERLLLCTHKD  109 (180)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEEC-CCCEEEE-CSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHH-----HcCCEEEeC-EEEEEEE-cCCEEEEEECCC-EEEECEEEECCCCC
Confidence            567777777665     567899999 9999998 677788988888 89999999998764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=93.93  E-value=0.075  Score=54.25  Aligned_cols=58  Identities=14%  Similarity=0.310  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...+.+.|.+.+.     ++|++|+++++|++|.. .++++ .|++.+|+++.||.||+|+-...
T Consensus       219 ~~~l~~~L~~~l~-----~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          219 LVTMIEKMRATII-----ELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHH-----hcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            3678888888776     56899999999999998 66665 48888898999999999998765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=93.65  E-value=0.11  Score=49.89  Aligned_cols=56  Identities=20%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. +++++.|.+.+|+++.+|.||+|+...
T Consensus       187 ~~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~d~vv~a~G~~  242 (384)
T 2v3a_A          187 PAAAKAVQAGLE-----GLGVRFHLGPVLASLKK-AGEGLEAHLSDGEVIPCDLVVSAVGLR  242 (384)
T ss_dssp             HHHHHHHHHHHH-----TTTCEEEESCCEEEEEE-ETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----HcCCEEEeCCEEEEEEe-cCCEEEEEECCCCEEECCEEEECcCCC
Confidence            445666666665     56799999999999998 677788888888899999999998763

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=93.44  E-value=0.077  Score=51.73  Aligned_cols=58  Identities=16%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC----CCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED----ANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~----~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ....+.+.|.+.+.     +.|++|+++++|++|.. +    +++|.|.+.+| ++.||+||+|+-...
T Consensus       107 ~~~~l~~~L~~~~~-----~~Gv~i~~~~~v~~i~~-~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          107 GAEQIVEMLKSECD-----KYGAKILLRSEVSQVER-IQNDEKVRFVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             CTHHHHHHHHHHHH-----HHTCEEECSCCEEEEEE-CCSCSSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred             CHHHHHHHHHHHHH-----HCCCEEEeCCEEEEEEc-ccCcCCCeEEEEECCC-EEECCEEEECCCCcc
Confidence            56778888887775     56789999999999998 5    56788888777 899999999996554

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.13  E-value=0.13  Score=51.50  Aligned_cols=54  Identities=24%  Similarity=0.375  Sum_probs=42.9

Q ss_pred             HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      +.+.+.+.+.     +.|.+|+++++|++|+. +++++.|.+.+|+++.+|.||+|+...
T Consensus       225 ~~~~l~~~l~-----~~GV~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          225 AALVLEESFA-----ERGVRLFKNARAASVTR-TGAGVLVTMTDGRTVEGSHALMTIGSV  278 (499)
T ss_dssp             HHHHHHHHHH-----HTTCEEETTCCEEEEEE-CSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHH-----HCCCEEEeCCEEEEEEE-eCCEEEEEECCCcEEEcCEEEECCCCC
Confidence            4444555554     56799999999999998 666788888888889999999998654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=93.11  E-value=0.15  Score=49.41  Aligned_cols=56  Identities=21%  Similarity=0.218  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|++|+++++|++|.. +++++ .|.+.+|+++.+|.||+++...
T Consensus       194 ~~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv~a~G~~  250 (415)
T 3lxd_A          194 EALSEFYQAEHR-----AHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVIVGIGIV  250 (415)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEEECSCCE
T ss_pred             HHHHHHHHHHHH-----hCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCCc
Confidence            444555555554     56799999999999998 66665 6888899899999999998863

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=93.06  E-value=0.11  Score=51.60  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.|.+.+.     +.|.+|+++++|++|+. .++++.|.+.+|+++.+|.||+|+...
T Consensus       233 ~~~~~l~~~l~-----~~Gv~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          233 DLRQLLNDAMV-----AKGISIIYEATVSQVQS-TENCYNVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             HHHHHHHHHHH-----HHTCEEESSCCEEEEEE-CSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHH-----HCCCEEEeCCEEEEEEe-eCCEEEEEECCCcEEEcCEEEEeeCCC
Confidence            34444555444     45789999999999998 777888999899899999999999863

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=93.03  E-value=0.17  Score=48.65  Aligned_cols=56  Identities=11%  Similarity=0.157  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ..|.+.|.+.+.+       ++|+++++|++|+. ++++|.|++.+|+++++|.||.|.-....
T Consensus       128 ~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          128 NDLRAILLNSLEN-------DTVIWDRKLVMLEP-GKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             HHHHHHHHHTSCT-------TSEEESCCEEEEEE-CSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             HHHHHHHHhhcCC-------CEEEECCEEEEEEE-CCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            5677788887752       58999999999998 77889999999988999999999987643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=93.01  E-value=0.14  Score=50.73  Aligned_cols=56  Identities=13%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. .++++.|.+.+|+++.+|.||+|+...
T Consensus       202 ~~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          202 KSLSQMLRHDLE-----KNDVVVHTGEKVVRLEG-ENGKVARVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-SSSBEEEEEESSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----hcCCEEEeCCEEEEEEc-cCCeEEEEEeCCCEEEcCEEEECCCCC
Confidence            445555555554     56799999999999998 677888888888899999999998863

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=92.71  E-value=0.19  Score=48.28  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      +...|.+.|.+.+.       |++|+++++|++|.. ++++|.|++.+|+++.+|.||.|.-....
T Consensus        97 ~~~~l~~~L~~~~~-------~~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           97 SYDSIYGGLYELFG-------PERYHTSKCLVGLSQ-DSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EHHHHHHHHHHHHC-------STTEETTCCEEEEEE-CSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CHHHHHHHHHHhCC-------CcEEEcCCEEEEEEe-cCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            34678888877764       378999999999998 78889999999989999999999877643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=92.65  E-value=0.21  Score=47.45  Aligned_cols=55  Identities=18%  Similarity=0.250  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|-+.|.+.+.        ..|+++++|++|+..++++|.|++++|+++++|.||-|=-...
T Consensus       112 ~~L~~~L~~~~~--------~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S  166 (412)
T 4hb9_A          112 TELKEILNKGLA--------NTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS  166 (412)
T ss_dssp             HHHHHHHHTTCT--------TTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             HHHHHHHHhhcc--------ceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence            356666777665        5799999999999845567999999999999999999877664

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=92.53  E-value=0.13  Score=49.20  Aligned_cols=56  Identities=21%  Similarity=0.199  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++|+.+++|++|.. ++++ +.|.+.+| ++.+|.||+|+-...
T Consensus       174 ~~~~~~l~~~~~-----~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          174 DHVAWAFARKAN-----EMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            378888887776     56799999999999998 5555 56888777 799999999998753

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=92.46  E-value=0.18  Score=48.74  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|++|+++++|++|.. +++++ .|.+.+|+++.+|.||+++...
T Consensus       184 ~~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~v~~V~~~dG~~i~aD~Vv~a~G~~  240 (404)
T 3fg2_P          184 PEISSYFHDRHS-----GAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGVGVI  240 (404)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHH-----hCCcEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECcCCc
Confidence            445555555554     56799999999999998 55665 5888899999999999998763

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.39  E-value=0.19  Score=46.72  Aligned_cols=56  Identities=21%  Similarity=0.393  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     +.|.+++++++|++|.. .++.+.|.+.+|+++.+|+||+|+-..
T Consensus        65 ~~~~~~l~~~~~-----~~~~~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           65 KDLVKGLVEQVA-----PFNPVYSLGERAETLER-EGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHHHHHHHG-----GGCCEEEESCCEEEEEE-ETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHH-----HcCCEEEeCCEEEEEEE-CCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            567777776665     45678999999999998 566888988888889999999999874

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=92.33  E-value=0.22  Score=48.93  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. .++++.|.+.+| ++.+|.||+|+...
T Consensus       189 ~~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~v~v~~~~g-~i~aD~Vv~A~G~~  243 (452)
T 3oc4_A          189 KEMVAEVQKSLE-----KQAVIFHFEETVLGIEE-TANGIVLETSEQ-EISCDSGIFALNLH  243 (452)
T ss_dssp             HHHHHHHHHHHH-----TTTEEEEETCCEEEEEE-CSSCEEEEESSC-EEEESEEEECSCCB
T ss_pred             HHHHHHHHHHHH-----HcCCEEEeCCEEEEEEc-cCCeEEEEECCC-EEEeCEEEECcCCC
Confidence            455566666665     56899999999999997 677788888777 89999999998764

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.13  E-value=0.2  Score=48.19  Aligned_cols=55  Identities=25%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.+       ++|+++++|++|+. ++++|.|++.+|+++.+|.||.|.-...
T Consensus       127 ~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          127 AELQREMLDYWGR-------DSVQFGKRVTRCEE-DADGVTVWFTDGSSASGDLLIAADGSHS  181 (407)
T ss_dssp             HHHHHHHHHHHCG-------GGEEESCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHhCCc-------CEEEECCEEEEEEe-cCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence            5677777777752       68999999999999 7889999999998999999999987764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=92.05  E-value=0.24  Score=49.53  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=43.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|++|+++++|++|.. .++++.|.+.+|+++.+|.||+++...
T Consensus       227 ~~~~~~~~~l~-----~~GV~v~~~~~V~~i~~-~~~~~~v~l~dG~~i~aD~Vv~a~G~~  281 (493)
T 1m6i_A          227 YLSNWTMEKVR-----REGVKVMPNAIVQSVGV-SSGKLLIKLKDGRKVETDHIVAAVGLE  281 (493)
T ss_dssp             HHHHHHHHHHH-----TTTCEEECSCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHH-----hcCCEEEeCCEEEEEEe-cCCeEEEEECCCCEEECCEEEECCCCC
Confidence            34444555554     56899999999999987 566778888889899999999998763

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=92.04  E-value=0.16  Score=49.94  Aligned_cols=56  Identities=23%  Similarity=0.240  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     +.|.+|+++++|++|+. +++++.+.+.+|+++.+|.||+|+...
T Consensus       208 ~~~~~~l~~~l~-----~~Gv~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~~D~vv~A~G~~  263 (455)
T 2yqu_A          208 LEVSRAAERVFK-----KQGLTIRTGVRVTAVVP-EAKGARVELEGGEVLEADRVLVAVGRR  263 (455)
T ss_dssp             HHHHHHHHHHHH-----HHTCEEECSCCEEEEEE-ETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----HCCCEEEECCEEEEEEE-eCCEEEEEECCCeEEEcCEEEECcCCC
Confidence            455555655554     45789999999999998 677788888788889999999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=91.95  E-value=0.15  Score=47.42  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     ..|.+++++++|++|.. .+++|. |++.+| ++.+|+||+|+-...
T Consensus        76 ~~~~~~l~~~~~-----~~~~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           76 AEVLAYLAQYEQ-----KYALPVLRPIRVQRVSH-FGERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHH-----HTTCCEECSCCEEEEEE-ETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHH-----HcCCEEEcCCEEEEEEE-CCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            455555554443     34578999999999999 788898 998888 899999999998643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=91.76  E-value=0.28  Score=46.19  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|.+++++++|++|.. .++ .+.|++.+|+++.+|+||+|+-...
T Consensus        74 ~~~~~~l~~~~~-----~~~~~~~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           74 IDLVESLWAQAE-----RYNPDVVLNETVTKYTK-LDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHHHHHHH-----TTCCEEECSCCEEEEEE-CTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             HHHHHHHHHHHH-----HhCCEEEcCCEEEEEEE-CCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence            567777776665     45689999999999998 444 7889988888899999999998743

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=91.58  E-value=0.2  Score=48.69  Aligned_cols=54  Identities=24%  Similarity=0.298  Sum_probs=41.9

Q ss_pred             HHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          47 VLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        47 L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      +.+.+.+.+.     +.|.+|+++++|++|.. ++....|.+.+|+++.+|.||+++...
T Consensus       187 ~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          187 IGAWLRGLLT-----ELGVQVELGTGVVGFSG-EGQLEQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             HHHHHHHHHH-----HHTCEEECSCCEEEEEC-SSSCCEEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHH-----HCCCEEEeCCEEEEEec-cCcEEEEEECCCCEEEcCEEEEeeCCe
Confidence            4444444444     45789999999999987 555457888899999999999999873

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=91.45  E-value=0.2  Score=50.44  Aligned_cols=55  Identities=25%  Similarity=0.431  Sum_probs=42.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc----EEEEeCCCc-EEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG----VLVTCADGS-QYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~----v~v~~~~G~-~~~ad~VIvtiP~~  106 (373)
                      .+.+.|.+.+.     +.|.+|+++++|++|.. .+++    +.|++.+|+ ++.+|.||+|+...
T Consensus       256 ~~~~~l~~~l~-----~~GV~i~~~~~V~~i~~-~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~  315 (523)
T 1mo9_A          256 ETRAYVLDRMK-----EQGMEIISGSNVTRIEE-DANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ  315 (523)
T ss_dssp             HHHHHHHHHHH-----HTTCEEESSCEEEEEEE-CTTSBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred             HHHHHHHHHHH-----hCCcEEEECCEEEEEEE-cCCCceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence            44555555554     56799999999999997 5554    778888887 79999999998753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=91.16  E-value=0.31  Score=48.62  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=42.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.|.+.+.     +.|.+|+++++|++|+. +++ .+.|.+.+|+++.+|.||+|+...
T Consensus       232 ~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~~~~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          232 ELRKQLTEQLR-----ANGINVRTHENPAKVTK-NADGTRHVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             HHHHHHHHHHH-----HTTEEEEETCCEEEEEE-CTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCCEEEEEECCCcEEEcCEEEEccCCC
Confidence            44555555554     56799999999999998 543 478888888889999999998653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=90.95  E-value=0.35  Score=48.34  Aligned_cols=54  Identities=19%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. .++ .+.|++.+|+++.+|.||+++..
T Consensus       236 ~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~~~~v~~~~G~~i~~D~vv~a~G~  290 (495)
T 2wpf_A          236 TIREEVTKQLT-----ANGIEIMTNENPAKVSL-NTDGSKHVTFESGKTLDVDVVMMAIGR  290 (495)
T ss_dssp             HHHHHHHHHHH-----HTTCEEEESCCEEEEEE-CTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCceEEEEECCCcEEEcCEEEECCCC
Confidence            34445555554     56799999999999998 543 47888888888999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=90.80  E-value=0.39  Score=44.21  Aligned_cols=56  Identities=18%  Similarity=0.271  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ...+.+.+.+.+.     +.|.+++++++|++|.. .++ .|.|.+.+|+ +.+|+||+|+-..
T Consensus        66 ~~~~~~~~~~~~~-----~~~~~~~~~~~v~~i~~-~~~~~~~v~~~~g~-~~~d~vVlAtG~~  122 (332)
T 3lzw_A           66 AQELINNLKEQMA-----KFDQTICLEQAVESVEK-QADGVFKLVTNEET-HYSKTVIITAGNG  122 (332)
T ss_dssp             HHHHHHHHHHHHT-----TSCCEEECSCCEEEEEE-CTTSCEEEEESSEE-EEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHH-----HhCCcEEccCEEEEEEE-CCCCcEEEEECCCE-EEeCEEEECCCCC
Confidence            3667777777776     55789999999999998 554 7899998884 9999999999874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=90.73  E-value=0.34  Score=47.89  Aligned_cols=54  Identities=24%  Similarity=0.273  Sum_probs=42.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc-EEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-QYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~-~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. .++++.|++.+|+ ++.+|.||+|+..
T Consensus       208 ~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~G~~~i~~D~vv~a~G~  262 (463)
T 2r9z_A          208 LLSATLAENMH-----AQGIETHLEFAVAALER-DAQGTTLVAQDGTRLEGFDSVIWAVGR  262 (463)
T ss_dssp             HHHHHHHHHHH-----HTTCEEESSCCEEEEEE-ETTEEEEEETTCCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-eCCeEEEEEeCCcEEEEcCEEEECCCC
Confidence            34445555554     45789999999999998 5666888888898 8999999999865

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=90.68  E-value=0.26  Score=52.61  Aligned_cols=56  Identities=27%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.++|++.+.     ++|++|+.+++|++|.. +++++ .|.+.+| ++.||+||+|+-...
T Consensus       151 ~~l~~~L~~~a~-----~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          151 ARAVQLLIKRTE-----SAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHH-----HcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence            478888888776     66899999999999998 66665 5778777 899999999998864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=90.33  E-value=0.34  Score=47.65  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=42.0

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      .+.+.|.+.+.     +.|.+|+++++|++|+. .++ .+.|++.+|+++.+|.||+|+..
T Consensus       209 ~~~~~l~~~l~-----~~Gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~~D~vv~a~G~  263 (450)
T 1ges_A          209 MISETLVEVMN-----AEGPQLHTNAIPKAVVK-NTDGSLTLELEDGRSETVDCLIWAIGR  263 (450)
T ss_dssp             HHHHHHHHHHH-----HHSCEEECSCCEEEEEE-CTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-eCCcEEEEEECCCcEEEcCEEEECCCC
Confidence            34455555554     45789999999999998 544 47888888888999999999865

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=90.12  E-value=0.31  Score=48.82  Aligned_cols=57  Identities=14%  Similarity=0.074  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc---EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS---QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~---~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     ++|++|+++++|++|+. ++++|.|++.++.   ++++|.||.|--...
T Consensus       107 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          107 STTESVLEEWAL-----GRGAELLRGHTVRALTD-EGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEESCEEEEEEE-CSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-eCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            445555555554     44689999999999998 7788888877764   789999999987764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=90.07  E-value=0.24  Score=48.34  Aligned_cols=58  Identities=10%  Similarity=0.273  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec--------------CCCcE-EEEeCCCcEE--EcCEEEEcCCcc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE--------------DANGV-LVTCADGSQY--SADKVLITVSLG  106 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~--------------~~~~v-~v~~~~G~~~--~ad~VIvtiP~~  106 (373)
                      ...+.++|.+.+.     +.|++|+.+++|++|...              .++++ .|.+.+| ++  .||.||+|+-..
T Consensus       180 ~~~l~~~L~~~~~-----~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~  253 (448)
T 3axb_A          180 AEKVVDYYYRRAS-----GAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVW  253 (448)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHH-----hCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcC
Confidence            3578888888776     568999999999999871              23444 6778777 68  999999999876


Q ss_pred             c
Q psy7654         107 V  107 (373)
Q Consensus       107 ~  107 (373)
                      .
T Consensus       254 s  254 (448)
T 3axb_A          254 S  254 (448)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=90.07  E-value=0.34  Score=45.51  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             CCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .|.+|+++++|++|.. .++++.|.+.+| ++.+|+||+|+-..
T Consensus       101 ~gv~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~~d~vVlAtG~~  142 (369)
T 3d1c_A          101 YELNIFENTVVTNISA-DDAYYTIATTTE-TYHADYIFVATGDY  142 (369)
T ss_dssp             TTCEEECSCCEEEEEE-CSSSEEEEESSC-CEEEEEEEECCCST
T ss_pred             cCCeEEeCCEEEEEEE-CCCeEEEEeCCC-EEEeCEEEECCCCC
Confidence            4579999999999998 667888988777 68999999998874

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=90.05  E-value=0.12  Score=50.03  Aligned_cols=56  Identities=20%  Similarity=0.250  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceE---------EEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVT---------KINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~---------~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.++|.+.+.     +.|++|+.+++|+         +|.. ++++|.|.+.+| ++.||.||+|.-...
T Consensus       172 ~~l~~~L~~~~~-----~~Gv~i~~~~~v~~~~g~~~~~~i~~-~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAI-----GQGAGLLLNTRAELVPGGVRLHRLTV-TNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHH-----TTTCEEECSCEEEEETTEEEEECBCC--------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCCEEEeccccccccceEe-eCCeEEEEECCc-EEECCEEEECCCccH
Confidence            568888888776     5689999999999         8987 667787777776 899999999998764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=89.95  E-value=0.4  Score=47.27  Aligned_cols=55  Identities=22%  Similarity=0.346  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEE-eCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVT-CADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~-~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. ++++ +.|. +.+|+ +.+|.||+|+...
T Consensus       211 ~~~~~~l~~~l~-----~~Gv~i~~~~~v~~i~~-~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          211 QDMRRGLHAAME-----EKGIRILCEDIIQSVSA-DADGRRVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-CTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----HCCCEEECCCEEEEEEE-cCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence            344555555554     56799999999999998 5444 6788 88886 9999999998763

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=89.83  E-value=0.27  Score=48.15  Aligned_cols=57  Identities=19%  Similarity=0.047  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC---Cc---EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD---GS---QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~---G~---~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     ..+..|+++++|++|+. .+++|.|++.+   |+   ++.+|+||+|+-...
T Consensus       115 ~~l~~~l~~~~~-----~~~~~i~~~t~V~~v~~-~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          115 HTIQEYQRIYAQ-----PLLPFIKLATDVLDIEK-KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             HHHHHHHHHHHG-----GGGGGEECSEEEEEEEE-ETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHH-----HhhCeEEeCCEEEEEEe-CCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCC
Confidence            445555544433     23467999999999998 67778887755   66   789999999998743

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=89.82  E-value=0.44  Score=42.26  Aligned_cols=55  Identities=18%  Similarity=0.141  Sum_probs=41.7

Q ss_pred             HHHHHHHHhCCCCCCCCC-CceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          46 NVLKLLLKQMPGQTPIDL-GKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~-G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      .+.+.|.+.+.     ++ |.+++ +++|++|.. +++++ .|.+.+|+++.+|.||+|+-...
T Consensus        69 ~~~~~l~~~~~-----~~~gv~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           69 AFHARAKYLLE-----GLRPLHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHHH-----TCTTEEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHHH-----cCCCcEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            55566666665     33 67888 679999998 56664 57788888899999999988743

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=89.65  E-value=0.32  Score=48.76  Aligned_cols=57  Identities=18%  Similarity=0.070  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc---EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS---QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~---~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     ++|++|+++++|++|+. ++++|.|++.++.   ++++|.||.|--...
T Consensus       106 ~~l~~~L~~~~~-----~~gv~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          106 SVTETHLEQWAT-----GLGADIRRGHEVLSLTD-DGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEETCEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHHHH-----HCCCEEECCcEEEEEEE-cCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            345555555554     44689999999999998 7788888877664   789999999987764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.48  E-value=0.56  Score=46.81  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcEEEEeCCCcE-EEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGVLVTCADGSQ-YSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v~v~~~~G~~-~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. .+ +.+.|.+.+|++ +.+|.||+|+...
T Consensus       217 ~~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          217 ESVINVLENDMK-----KNNINIVTFADVVEIKK-VSDKNLSIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-SSTTCEEEEETTSCEEEEESEEEECCCBC
T ss_pred             hhhHHHHHHHHH-----hCCCEEEECCEEEEEEE-cCCceEEEEECCCcEEEECCEEEECCCCC
Confidence            344555555554     56799999999999997 44 347888888877 9999999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=89.45  E-value=0.41  Score=47.43  Aligned_cols=54  Identities=11%  Similarity=0.159  Sum_probs=40.8

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--EEEEeCCC-cEEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--VLVTCADG-SQYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~G-~~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. .+++  +.|.+.+| +++.+|.||+|+..
T Consensus       227 ~~~~~l~~~l~-----~~Gv~i~~~~~v~~i~~-~~~~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          227 CIQNTITDHYV-----KEGINVHKLSKIVKVEK-NVETDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             HHHHHHHHHHH-----HHTCEEECSCCEEEEEE-CC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHH-----hCCeEEEeCCEEEEEEE-cCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence            34444555444     45789999999999997 5444  77888888 78999999999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=89.44  E-value=0.5  Score=43.14  Aligned_cols=55  Identities=20%  Similarity=0.374  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.++++ ++|++|.. .++.+.|.+.+|.++.+|+||+|+-..
T Consensus        70 ~~~~~~~~~~~~-----~~~v~~~~-~~v~~i~~-~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           70 SDMIKVFNKHIE-----KYEVPVLL-DIVEKIEN-RGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHHHH-----TTTCCEEE-SCEEEEEE-C--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHH-----HcCCEEEE-EEEEEEEe-cCCEEEEEECCCCEEEcCEEEECcCCC
Confidence            567777766665     45688999 99999998 778899999888899999999998765

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=89.27  E-value=0.39  Score=45.81  Aligned_cols=59  Identities=14%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC-ADGS--QYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~-~~G~--~~~ad~VIvtiP~~~l  108 (373)
                      ..+.+.|.+.+.     +.|++|+++++|++|...+++++.|+. .+|+  ++.+|.||.|.-....
T Consensus       103 ~~l~~~L~~~~~-----~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          103 TEVTRDLMEARE-----ACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHHHHHHHH-----hcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            456666766654     346899999999999973245677776 6776  6899999999887643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=89.18  E-value=0.47  Score=48.19  Aligned_cols=56  Identities=20%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcE---EEEeCCCc--EEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGV---LVTCADGS--QYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v---~v~~~~G~--~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     ++|++|+++++|++|.. ++ ++|   .+...+|+  ++.+|.||+|+-..
T Consensus       255 ~~l~~~L~~~~~-----~~gv~i~~~~~v~~l~~-~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          255 AHVVQVLYDNAV-----KRNIDLRMNTRGIEVLK-DDKGTVKGILVKGMYKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEESSEEEEEEEE-CTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHH-----hcCCEEEeCCEeeEeEE-cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence            678888888776     56899999999999998 55 553   34443665  68999999998764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=89.05  E-value=0.37  Score=48.29  Aligned_cols=61  Identities=20%  Similarity=0.249  Sum_probs=43.6

Q ss_pred             CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeC-CCc--EEEcC-EEEEcCCccc
Q psy7654          42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCA-DGS--QYSAD-KVLITVSLGV  107 (373)
Q Consensus        42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~-~G~--~~~ad-~VIvtiP~~~  107 (373)
                      +|...|++.|.+.+.     ++|++|+++++|++|..+.+++|. |... +|+  ++.|| .||+|+--..
T Consensus       199 ~g~~~l~~~L~~~~~-----~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          199 GGGYMLMKPLVETAE-----KLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             CTTHHHHHHHHHHHH-----HTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             CCHHHHHHHHHHHHH-----HcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            444588888888776     568999999999999983245542 4332 332  57896 9999887653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=88.97  E-value=0.55  Score=46.00  Aligned_cols=55  Identities=18%  Similarity=0.326  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. .++++. +.+ +|+++.+|.||+|+...
T Consensus       191 ~~~~~~l~~~l~-----~~Gv~i~~~~~v~~i~~-~~~~v~~v~~-~g~~i~~D~vv~a~G~~  246 (452)
T 2cdu_A          191 KEFTDILAKDYE-----AHGVNLVLGSKVAAFEE-VDDEIITKTL-DGKEIKSDIAILCIGFR  246 (452)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEESSCEEEEEE-ETTEEEEEET-TSCEEEESEEEECCCEE
T ss_pred             hhHHHHHHHHHH-----HCCCEEEcCCeeEEEEc-CCCeEEEEEe-CCCEEECCEEEECcCCC
Confidence            445555555554     56799999999999987 566665 444 77889999999999764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=88.96  E-value=0.61  Score=42.66  Aligned_cols=57  Identities=9%  Similarity=0.114  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC--CCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED--ANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~--~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+++++++|++|....  ++.+.|++.+|+++.+|+||+|+-..
T Consensus        56 ~~~~~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           56 QKLAGALKVHVD-----EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             HHHHHHHHHHHH-----TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHH-----HcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            456666666554     4568999999999998621  23688888888889999999999764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=88.68  E-value=0.37  Score=46.31  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--EEEEeCCCc--EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--VLVTCADGS--QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~G~--~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++|+++++|++|.. .+++  +.|.+.+|+  ++.||.||.|.-...
T Consensus       106 ~~~~~~L~~~a~-----~~gv~i~~~~~v~~i~~-~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          106 GNFDKTLADEAA-----RQGVDVEYEVGVTDIKF-FGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHH-----HHTCEEECSEEEEEEEE-ETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-eCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            456666666554     45789999999999998 6665  456667887  689999999987653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=88.55  E-value=0.42  Score=48.56  Aligned_cols=58  Identities=19%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcE---EEEeCCCc--EEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGV---LVTCADGS--QYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v---~v~~~~G~--~~~ad~VIvtiP~~~  107 (373)
                      -..|.+.|.+.+.     ++|++|+++++|++|.. ++ ++|   .+...+|+  ++.+|.||+|+-...
T Consensus       249 ~~~l~~~L~~~~~-----~~gv~i~~~~~v~~l~~-~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          249 GPEIIDTLRKAAK-----EQGIDTRLNSRVVKLVV-NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHH-----HTTCCEECSEEEEEEEE-CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHH-----hcCCEEEeCCEEEEEEE-CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            4668888887776     56799999999999998 55 654   34444675  578999999987654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=88.40  E-value=0.69  Score=42.29  Aligned_cols=54  Identities=17%  Similarity=0.257  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ..+.+.|.+.+.     +.|.++++ ++|++|.. .++++.|.+.+|+++.+|+||+|+-.
T Consensus        59 ~~~~~~l~~~~~-----~~~v~~~~-~~v~~i~~-~~~~~~v~~~~g~~~~~~~vv~AtG~  112 (311)
T 2q0l_A           59 LDFMQPWQEQCF-----RFGLKHEM-TAVQRVSK-KDSHFVILAEDGKTFEAKSVIIATGG  112 (311)
T ss_dssp             HHHHHHHHHHHH-----TTSCEEEC-SCEEEEEE-ETTEEEEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHH-----HcCCEEEE-EEEEEEEE-cCCEEEEEEcCCCEEECCEEEECCCC
Confidence            556666666554     45688988 79999998 67778888888888999999999985

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=88.25  E-value=0.57  Score=46.13  Aligned_cols=54  Identities=15%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             HHHHHHHhC-CCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEcCCcc
Q psy7654          47 VLKLLLKQM-PGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA--DG--SQYSADKVLITVSLG  106 (373)
Q Consensus        47 L~~~L~~~l-~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G--~~~~ad~VIvtiP~~  106 (373)
                      +.+.+.+.+ .     +.|.+|+++++|++|+. +++++.|.+.  +|  +++.+|.||+|+...
T Consensus       217 ~~~~l~~~l~~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~  275 (468)
T 2qae_A          217 VTNALVGALAK-----NEKMKFMTSTKVVGGTN-NGDSVSLEVEGKNGKRETVTCEALLVSVGRR  275 (468)
T ss_dssp             HHHHHHHHHHH-----HTCCEEECSCEEEEEEE-CSSSEEEEEECC---EEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHhh-----cCCcEEEeCCEEEEEEE-cCCeEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            444444444 4     45789999999999998 6666766654  56  578999999998763

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=88.20  E-value=0.34  Score=48.68  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC----cEEEEeCCC---cEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN----GVLVTCADG---SQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~----~v~v~~~~G---~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     ++|++|+++++|++|+. +++    +|.+++.++   .++.||.||.|.-...
T Consensus       120 ~~l~~~L~~~a~-----~~gv~i~~~~~v~~i~~-~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          120 DKLEPILLAQAR-----KHGGAIRFGTRLLSFRQ-HDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEESSCEEEEEEE-ECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-CCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            456666666665     45789999999999998 676    888877665   6789999999988764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=88.02  E-value=0.6  Score=46.06  Aligned_cols=56  Identities=27%  Similarity=0.290  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. +++++.|...++   +++.+|.||+++...
T Consensus       221 ~~~~~~l~~~l~-----~~Gv~v~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          221 EQVAKEAQKILT-----KQGLKILLGARVTGTEV-KNKQVTVKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             HHHHHHHHHHHH-----HTTEEEEETCEEEEEEE-CSSCEEEEEESSSEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----hCCCEEEECCEEEEEEE-cCCEEEEEEEeCCCcEEEECCEEEEeeCCc
Confidence            344455555554     45789999999999998 677777766543   578999999999764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=88.00  E-value=0.61  Score=47.49  Aligned_cols=57  Identities=28%  Similarity=0.233  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcE---EEEeCCCc--EEEcCEEEEcCCcc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGV---LVTCADGS--QYSADKVLITVSLG  106 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v---~v~~~~G~--~~~ad~VIvtiP~~  106 (373)
                      -..+.+.|.+.+.     ++|++|+++++|++|.. ++ ++|   .+...+|+  ++.+|.||+|+-..
T Consensus       254 g~~l~~~L~~~~~-----~~gv~i~~~t~v~~l~~-~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~  316 (572)
T 1d4d_A          254 GAHVAQVLWDNAV-----KRGTDIRLNSRVVRILE-DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF  316 (572)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEESSEEEEEEEE-C--CCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHH-----HcCCeEEecCEEEEEEE-CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCC
Confidence            4578888888776     56899999999999987 55 543   34444664  57899999998754

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=87.99  E-value=0.76  Score=45.70  Aligned_cols=56  Identities=16%  Similarity=0.185  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--VLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++++.+ +|++|.. ++++  +.|++.+|+++.+|.||.|.-...
T Consensus       173 ~~l~~~L~~~a~-----~~gv~~~~~-~v~~i~~-~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          173 DEVARYLSEYAI-----ARGVRHVVD-DVQHVGQ-DERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEEC-CEEEEEE-CTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHH-----HCCCEEEEC-eEeEEEE-cCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            456666666654     457899999 9999998 5444  678888888899999999998864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=87.93  E-value=0.5  Score=47.90  Aligned_cols=40  Identities=28%  Similarity=0.223  Sum_probs=35.2

Q ss_pred             eEEcCCceEEEEecCCC--cEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          66 KLLLNKEVTKINWEDAN--GVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        66 ~I~ln~~V~~I~~~~~~--~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .|+++++|++|+. +++  +|.|++.+|+++.+|+||+|+-..
T Consensus       105 ~i~~~~~V~~i~~-~~~~~~~~V~~~~G~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A          105 HFKFGTEVTSALY-LDDENLWEVTTDHGEVYRAKYVVNAVGLL  146 (540)
T ss_dssp             GEEESCCEEEEEE-ETTTTEEEEEETTSCEEEEEEEEECCCSC
T ss_pred             eeEeccEEEEEEE-eCCCCEEEEEEcCCCEEEeCEEEECCccc
Confidence            7999999999998 444  789999999889999999999863

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=87.90  E-value=0.52  Score=47.04  Aligned_cols=58  Identities=12%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCCc--EEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADGS--QYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G~--~~~ad~VIvtiP~~~  107 (373)
                      -..+..+|++.+.     +.|++|+.+++|++|.. +++.+.|.+   .+|+  ++.||.||+|+-+..
T Consensus       148 ~~~l~~~l~~~a~-----~~Gv~i~~~~~V~~l~~-~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVV-----RKGGEVLTRTRATSARR-ENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEECSEEEEEEEE-ETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHH-----HcCCEEEcCcEEEEEEE-eCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            4678888887775     56899999999999998 566566666   3565  689999999998874

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=87.87  E-value=0.92  Score=41.55  Aligned_cols=56  Identities=16%  Similarity=0.229  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCC----C--cEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCAD----G--SQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~----G--~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|.. +++++ .|...+    |  .++.+|.||++++..
T Consensus       184 ~~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~  246 (320)
T 1trb_A          184 KILIKRLMDKVE-----NGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS  246 (320)
T ss_dssp             HHHHHHHHHHHH-----TSSEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred             HHHHHHHHHhcc-----cCCeEEEcCceeEEEEc-CCCceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence            345556666554     56799999999999998 55453 243322    4  578999999998864

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=87.80  E-value=0.65  Score=46.93  Aligned_cols=56  Identities=23%  Similarity=0.266  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhCCCCCCCCC-CceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDL-GKKLLLNKEVTKINWEDANG--VLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~-G~~I~ln~~V~~I~~~~~~~--v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +. |++|+++ +|++|.. ++++  +.|.+.+|+++.+|.||.|.-...
T Consensus       194 ~~l~~~L~~~~~-----~~~Gv~i~~~-~V~~i~~-~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          194 HLVADFLRRFAT-----EKLGVRHVED-RVEHVQR-DANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHH-----HHSCCEEEEC-CEEEEEE-CTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHH-----hcCCcEEEEC-eEeEEEE-cCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            456666766664     45 7899999 9999998 5444  578888888899999999998764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=87.72  E-value=0.65  Score=44.14  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     +.|++|+++++|++|.. +  + .|++.+|+++.+|.||.|.-...
T Consensus       107 ~~l~~~L~~~~~-----~~gv~i~~~~~v~~i~~-~--~-~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          107 SHLHDALVNRAR-----ALGVDISVNSEAVAADP-V--G-RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEESSCCEEEEET-T--T-EEEETTSCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHH-----hcCCEEEeCCEEEEEEe-C--C-EEEECCCCEEEcCEEEECCCccH
Confidence            556666666654     34689999999999986 3  3 67778888899999999988764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=87.65  E-value=0.86  Score=45.95  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=35.7

Q ss_pred             ceEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          65 KKLLLNKEVTKINWEDA-NGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        65 ~~I~ln~~V~~I~~~~~-~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+|+++++|++++...+ +.|.|++.+|++++||+||+|+-..
T Consensus       111 ~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A          111 SGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             GGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             ceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence            57999999999998332 4689999899899999999999864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=87.65  E-value=0.58  Score=46.14  Aligned_cols=54  Identities=20%  Similarity=0.299  Sum_probs=40.7

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-C--Cc--EEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-D--GS--QYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-~--G~--~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. .++++.|+.. +  |+  ++.+|.||+|+..
T Consensus       211 ~~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~  269 (464)
T 2eq6_A          211 ETAALLRRALE-----KEGIRVRTKTKAVGYEK-KKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR  269 (464)
T ss_dssp             HHHHHHHHHHH-----HTTCEEECSEEEEEEEE-ETTEEEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHH-----hcCCEEEcCCEEEEEEE-eCCEEEEEEeecCCCceeEEEcCEEEECCCc
Confidence            44445555554     45789999999999998 6667777665 5  76  7899999999865

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=87.48  E-value=0.48  Score=45.40  Aligned_cols=59  Identities=8%  Similarity=-0.017  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ..+.+.+.+.+... -.+.|.++++++.|..++. +++...|.+.+|+++.+|.||+++|.
T Consensus       198 ~~~~~~~~~~~~~~-l~~~gi~v~~~~~v~~v~~-~~~~~~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          198 AQFTKGWERLYGFG-TENALIEWHPGPDAAVVKT-DTEAMTVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             HHHHHHHHHHSCTT-STTCSEEEECTTTTCEEEE-ETTTTEEEETTSCEEECSEEEECCCE
T ss_pred             ccccHHHHHHHHHH-HHhcCcEEEeCceEEEEEe-cccceEEEcCCCcEEEeeEEEEecCc
Confidence            34444555444311 1267889999999999998 67777888999999999999998875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=87.41  E-value=0.52  Score=46.70  Aligned_cols=55  Identities=20%  Similarity=0.249  Sum_probs=41.5

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC----CcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD----GSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~----G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. +++++.|++.+    |+++.+|.||+++...
T Consensus       227 ~~~~~l~~~l~-----~~gV~i~~~~~v~~i~~-~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~  285 (482)
T 1ojt_A          227 DLVKVWQKQNE-----YRFDNIMVNTKTVAVEP-KEDGVYVTFEGANAPKEPQRYDAVLVAAGRA  285 (482)
T ss_dssp             HHHHHHHHHHG-----GGEEEEECSCEEEEEEE-ETTEEEEEEESSSCCSSCEEESCEEECCCEE
T ss_pred             HHHHHHHHHHH-----hcCCEEEECCEEEEEEE-cCCeEEEEEeccCCCceEEEcCEEEECcCCC
Confidence            44455555554     56789999999999998 56666676655    6778999999998653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=87.12  E-value=1  Score=45.57  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=35.1

Q ss_pred             eEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          66 KLLLNKEVTKINWEDA-NGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        66 ~I~ln~~V~~I~~~~~-~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      +|+++++|++++...+ .+|.|++.+|+++.||+||+|+-..
T Consensus       117 ~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A          117 DIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPL  158 (549)
T ss_dssp             GEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSE
T ss_pred             cEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCC
Confidence            7999999999998332 3789999999899999999999853

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=87.09  E-value=0.89  Score=44.35  Aligned_cols=57  Identities=23%  Similarity=0.309  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec-CCCcE-EEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE-DANGV-LVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~-~~~~v-~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|... .++++ .|.+.+|+++.+|.||+++...
T Consensus       191 ~~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          191 PPVSAFYEHLHR-----EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             HHHHHHHHHHHH-----HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHH-----hCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            345555555554     557899999999999861 13445 6778888899999999999863

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=87.06  E-value=0.77  Score=45.27  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc-EEEEe-----CCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG-VLVTC-----ADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~-v~v~~-----~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. ++++ +.|+.     .+++++.+|.||+|+...
T Consensus       220 ~~~~~~l~~~l~-----~~Gv~i~~~~~v~~i~~-~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~  281 (474)
T 1zmd_A          220 MEISKNFQRILQ-----KQGFKFKLNTKVTGATK-KSDGKIDVSIEAASGGKAEVITCDVLLVCIGRR  281 (474)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSEEEEEEEE-CTTSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----HCCCEEEeCceEEEEEE-cCCceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence            334455555554     56789999999999998 5555 76663     456689999999998764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=86.83  E-value=0.67  Score=45.40  Aligned_cols=58  Identities=12%  Similarity=0.001  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEE-EEe--C-CCc--EEEcCEEEEcCCcccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVL-VTC--A-DGS--QYSADKVLITVSLGVF  108 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~-v~~--~-~G~--~~~ad~VIvtiP~~~l  108 (373)
                      ..+.+.|.+.+.     +.|++|+++++|++|.. +++++. |+.  . +|+  ++.||.||.|.-....
T Consensus       100 ~~l~~~L~~~a~-----~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          100 PLYNQRVLKEAQ-----DRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHHHHHHHHHH-----HcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            456666766654     45689999999999998 666653 443  3 665  7899999999887643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=86.79  E-value=1.1  Score=40.30  Aligned_cols=56  Identities=13%  Similarity=0.223  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCC-CceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDL-GKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~-G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ...+.+.+.+.+.     +. +.++. +++|++|.. .++++.|++.+|+++.+|+||+|+-..
T Consensus        55 ~~~~~~~~~~~~~-----~~~~v~~~-~~~v~~i~~-~~~~~~v~~~~g~~~~~d~vviAtG~~  111 (297)
T 3fbs_A           55 PGEIIAEARRQIE-----RYPTIHWV-EGRVTDAKG-SFGEFIVEIDGGRRETAGRLILAMGVT  111 (297)
T ss_dssp             HHHHHHHHHHHHT-----TCTTEEEE-ESCEEEEEE-ETTEEEEEETTSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHHH-----hcCCeEEE-EeEEEEEEE-cCCeEEEEECCCCEEEcCEEEECCCCC
Confidence            4577777777775     23 34443 569999998 677899999999889999999999874

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=86.70  E-value=0.99  Score=45.42  Aligned_cols=56  Identities=13%  Similarity=0.313  Sum_probs=41.9

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEec------------------CCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE------------------DANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~------------------~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+++++++|++|...                  .++++.+...+|+++.+|.||+|+...
T Consensus       193 ~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  266 (565)
T 3ntd_A          193 EMAGFAHQAIR-----DQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVR  266 (565)
T ss_dssp             HHHHHHHHHHH-----HTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-----HCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCc
Confidence            34444444443     457899999999999872                  255677888888899999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=86.55  E-value=0.87  Score=44.78  Aligned_cols=55  Identities=13%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. +++.+.|.+.+ .++.+|.||+|+...
T Consensus       216 ~~~~~~l~~~l~-----~~Gv~i~~~~~v~~i~~-~~~~~~v~~~~-~~i~aD~Vv~a~G~~  270 (467)
T 1zk7_A          216 PAIGEAVTAAFR-----AEGIEVLEHTQASQVAH-MDGEFVLTTTH-GELRADKLLVATGRT  270 (467)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEETTCCEEEEEE-ETTEEEEEETT-EEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-eCCEEEEEECC-cEEEcCEEEECCCCC
Confidence            345566666665     56799999999999998 66667777764 589999999998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=86.45  E-value=0.28  Score=50.05  Aligned_cols=57  Identities=23%  Similarity=0.175  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe--CCC-cEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC--ADG-SQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~--~~G-~~~~ad~VIvtiP~~~  107 (373)
                      ..|.+.|.+.+.     +.|++|+++++|++|+. ++++|.|++  .+| +++++|.||.|--...
T Consensus       148 ~~l~~~L~~~a~-----~~gv~i~~~~~v~~l~~-~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          148 SRTEALLAEHAR-----EAGAEIPRGHEVTRLRQ-DAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHHHHHHHHH-----HHTEECCBSCEEEECCB-CSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEE-cCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            455666666554     44689999999999998 788888876  677 6899999999988764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=85.89  E-value=0.82  Score=45.67  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc---EEEEeCCCc--EEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG---VLVTCADGS--QYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~---v~v~~~~G~--~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++|+++++|++|.. ++++   |.+...+|+  ++.+|.||.|.-...
T Consensus       111 ~~l~~~L~~~a~-----~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          111 ARFDDMLLRNSE-----RKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            456666666654     45789999999999998 6665   455566674  789999999998864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=85.50  E-value=1.3  Score=45.28  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcEE-EEeC------CC---------cEEEcCEEEEcCCcc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGVL-VTCA------DG---------SQYSADKVLITVSLG  106 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v~-v~~~------~G---------~~~~ad~VIvtiP~~  106 (373)
                      ...|.+.|.+.+.     ++|++|+++++|++|.. ++ +.|. |.+.      +|         .++.||.||.|.-..
T Consensus       143 r~~l~~~L~~~a~-----~~Gv~i~~g~~v~~l~~-~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~  216 (584)
T 2gmh_A          143 LGHLVSWMGEQAE-----ALGVEVYPGYAAAEILF-HEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCH  216 (584)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEETTCCEEEEEE-CTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTT
T ss_pred             HHHHHHHHHHHHH-----HcCCEEEcCCEEEEEEE-cCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCC
Confidence            3477777877775     56799999999999998 54 4554 6665      33         579999999998876


Q ss_pred             c
Q psy7654         107 V  107 (373)
Q Consensus       107 ~  107 (373)
                      .
T Consensus       217 S  217 (584)
T 2gmh_A          217 G  217 (584)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=85.47  E-value=1.1  Score=45.52  Aligned_cols=56  Identities=16%  Similarity=0.062  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      -..+.+.+.+.+.     +.|.++++++.|.++.. .++++.|...+++++.+|.|++|+--
T Consensus       262 D~ei~~~l~~~l~-----~~gi~~~~~~~v~~~~~-~~~~~~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          262 DQQCAVKVKLYME-----EQGVMFKNGILPKKLTK-MDDKILVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             CHHHHHHHHHHHH-----HTTCEEEETCCEEEEEE-ETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             chhHHHHHHHHHH-----hhcceeecceEEEEEEe-cCCeEEEEEcCCCeEEEEEEEEcccc
Confidence            3445666666665     56789999999999999 78889999888888999999999843

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=85.45  E-value=0.72  Score=42.64  Aligned_cols=54  Identities=19%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     +.|.++++++ |++|.. .++.+.|++ +|.++.+|+||+|+-..
T Consensus        70 ~~~~~~l~~~~~-----~~gv~~~~~~-v~~i~~-~~~~~~v~~-~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           70 VELTDKFRKQSE-----RFGTTIFTET-VTKVDF-SSKPFKLFT-DSKAILADAVILAIGAV  123 (333)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECCC-CCEEEC-SSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHH-----HCCCEEEEeE-EEEEEE-cCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence            466666666554     4568999997 999998 677788888 77789999999999875

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=85.43  E-value=0.89  Score=44.67  Aligned_cols=55  Identities=33%  Similarity=0.434  Sum_probs=40.0

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-DG--SQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-~G--~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. +++++.+... +|  +++.+|.||+++...
T Consensus       213 ~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          213 DVSKEIEKQFK-----KLGVTILTATKVESIAD-GGSQVTVTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             HHHHHHHHHHH-----HHTCEEECSCEEEEEEE-CSSCEEEEEESSSCEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-----HcCCEEEeCcEEEEEEE-cCCeEEEEEEcCCceEEEEcCEEEECCCCC
Confidence            34444444444     45789999999999998 5666777654 55  578999999998753

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=85.18  E-value=0.66  Score=45.50  Aligned_cols=55  Identities=24%  Similarity=0.302  Sum_probs=40.4

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC---CCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA---DGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~---~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. +++++.++..   +++++.+|.||+|+...
T Consensus       212 ~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  269 (455)
T 1ebd_A          212 QMAAIIKKRLK-----KKGVEVVTNALAKGAEE-REDGVTVTYEANGETKTIDADYVLVTVGRR  269 (455)
T ss_dssp             HHHHHHHHHHH-----HTTCEEEESEEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-eCCeEEEEEEeCCceeEEEcCEEEECcCCC
Confidence            44455555554     45789999999999997 5666766653   34678999999998764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=84.55  E-value=0.97  Score=44.69  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=38.7

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCc-----EEEcCEEEEcCCc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGS-----QYSADKVLITVSL  105 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~-----~~~ad~VIvtiP~  105 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+...++.+.|++.+++     ++.+|.||+++..
T Consensus       228 ~~~~~l~~~l~-----~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~  287 (483)
T 3dgh_A          228 QMAELVAASME-----ERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR  287 (483)
T ss_dssp             HHHHHHHHHHH-----HTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHH-----hCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence            34444555554     4578999999999999833445666655443     6899999999865

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=84.55  E-value=1.1  Score=45.88  Aligned_cols=58  Identities=24%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-DG--SQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-~G--~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++|+.+++|++|...+++.+.|++. +|  .++.||.||.|.-...
T Consensus       128 ~~l~~~L~~~a~-----~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          128 EEFDKLLLDEAR-----SRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHH-----hCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            456666666664     4578999999999999833556777776 66  5789999999997754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=84.20  E-value=0.73  Score=44.34  Aligned_cols=51  Identities=22%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ..+.+.+.+.+.     ++|.+++++++|++|+.   ++  |.+.+|+++.+|.||++++.
T Consensus       218 ~~~~~~~~~~l~-----~~gV~~~~~~~v~~i~~---~~--v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          218 PNSRKAVASIYN-----QLGIKLVHNFKIKEIRE---HE--IVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHH-----HHTCEEECSCCEEEECS---SE--EEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHH-----HCCCEEEcCCceEEECC---Ce--EEECCCCEEeeeEEEECCCC
Confidence            345555555554     56789999999999965   23  66678889999999999876

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=83.82  E-value=0.92  Score=44.53  Aligned_cols=55  Identities=24%  Similarity=0.378  Sum_probs=39.9

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC---CC--cEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA---DG--SQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~---~G--~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. +++++.|+..   +|  +++.+|.||+|+...
T Consensus       219 ~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~  278 (470)
T 1dxl_A          219 EIRKQFQRSLE-----KQGMKFKLKTKVVGVDT-SGDGVKLTVEPSAGGEQTIIEADVVLVSAGRT  278 (470)
T ss_dssp             HHHHHHHHHHH-----HSSCCEECSEEEEEEEC-SSSSEEEEEEESSSCCCEEEEESEEECCCCEE
T ss_pred             HHHHHHHHHHH-----HcCCEEEeCCEEEEEEE-cCCeEEEEEEecCCCcceEEECCEEEECCCCC
Confidence            44455555554     45789999999999997 5666666643   44  578999999998764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=83.81  E-value=1.2  Score=40.88  Aligned_cols=54  Identities=11%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC---CCcEEEcCEEEEcCCc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA---DGSQYSADKVLITVSL  105 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~---~G~~~~ad~VIvtiP~  105 (373)
                      ..+.+.|.+.+.     +.|.++++++ |++|.. .++.+.+.+.   ++.++.+|+||+|+-.
T Consensus        84 ~~~~~~~~~~~~-----~~gv~i~~~~-v~~i~~-~~~~~~v~~~~~~~~~~~~~d~vvlAtG~  140 (338)
T 3itj_A           84 SELMDRMREQST-----KFGTEIITET-VSKVDL-SSKPFKLWTEFNEDAEPVTTDAIILATGA  140 (338)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSC-EEEEEC-SSSSEEEEETTCSSSCCEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHH-----HcCCEEEEeE-EEEEEE-cCCEEEEEEEecCCCcEEEeCEEEECcCC
Confidence            466666666655     4568999999 999998 7888888873   6678999999999876

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=83.32  E-value=1.7  Score=42.02  Aligned_cols=51  Identities=20%  Similarity=0.328  Sum_probs=38.4

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+ + +   .|++.+|+++.+|.||+++...
T Consensus       188 ~~~~~l~~~l~-----~~GV~i~~~~~v~~i~-~-~---~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          188 TLADFVARYHA-----AQGVDLRFERSVTGSV-D-G---VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             HHHHHHHHHHH-----HTTCEEEESCCEEEEE-T-T---EEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHH-----HcCcEEEeCCEEEEEE-C-C---EEEECCCCEEEcCEEEECcCCC
Confidence            34445555554     5679999999999998 2 2   5666788899999999998763

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=83.31  E-value=0.26  Score=46.14  Aligned_cols=40  Identities=33%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             CCceEEEeccccCCCC----cc-hhhHHHHHHHHHHHHHHhhCCC
Q psy7654         333 GKQVLLFAGEASNEHQ----YG-TVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       333 ~~~~i~fAGd~~s~~~----~g-~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      +.|+||.|||......    .| ..-|++.||++||+.|++.|.+
T Consensus       282 ~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~laa  326 (326)
T 3fpz_A          282 GVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA  326 (326)
T ss_dssp             TSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            4468999999864221    23 4567889999999999998754

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=83.19  E-value=1.6  Score=43.86  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--VLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+.+.|.+.+.     +.|++++.+ +|++|.. ++++  +.|++.+|+++.+|.||.|.-...
T Consensus       165 ~~l~~~L~~~a~-----~~gv~~~~~-~v~~i~~-~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          165 HLVADFLKRWAV-----ERGVNRVVD-EVVDVRL-NNRGYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEEC-CEEEEEE-CTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             HHHHHHHHHHHH-----HCCCEEEEe-eEeEEEE-cCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence            566667766664     457899999 8999998 5443  578888888899999999998764

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=83.00  E-value=0.73  Score=46.85  Aligned_cols=58  Identities=19%  Similarity=0.104  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeC---CC--cEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCA---DG--SQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~---~G--~~~~ad~VIvtiP~~~  107 (373)
                      -..|..+|++.+.     +.|++|+.+++|++|.. +++++ .|.+.   +|  .++.|+.||+|+-++.
T Consensus       169 ~~~l~~~L~~~a~-----~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAV-----ARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHH-----HcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            3678888887765     66899999999999998 66664 35543   33  3689999999998865

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=82.84  E-value=1.7  Score=43.64  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC--CCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED--ANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~--~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     +.|.+++++++|++|....  ++.+.|++.+|+++.+|+||+|+-..
T Consensus       267 ~~l~~~l~~~~~-----~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          267 QKLAGALKAHVS-----DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             HHHHHHHHHHHH-----TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHH-----HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            456666766665     5678999999999998621  23688888888899999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=82.75  E-value=1.4  Score=42.92  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=35.4

Q ss_pred             CCceEEcCCceEEEEecCCCcEEEEeC---CCcE--EEcCEEEEcCCcc
Q psy7654          63 LGKKLLLNKEVTKINWEDANGVLVTCA---DGSQ--YSADKVLITVSLG  106 (373)
Q Consensus        63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~---~G~~--~~ad~VIvtiP~~  106 (373)
                      .|.+|+++++|++|+. .++++.|+..   +|+.  +.+|.||+|+-..
T Consensus       329 ~~v~i~~~~~v~~v~~-~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          329 PRHAFRCMTTVERATA-TAQGIELALRDAGSGELSVETYDAVILATGYE  376 (463)
T ss_dssp             CCSEEETTEEEEEEEE-ETTEEEEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred             CCeEEEeCCEEEEEEe-cCCEEEEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence            4689999999999998 6778877765   6654  8999999998763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=82.67  E-value=1.1  Score=44.28  Aligned_cols=55  Identities=27%  Similarity=0.318  Sum_probs=39.7

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC---C--cEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD---G--SQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~---G--~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. .++++.|...+   |  +++.+|.||+|+...
T Consensus       240 ~~~~~l~~~l~-----~~gV~v~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~  299 (491)
T 3urh_A          240 EVAKQLQRMLT-----KQGIDFKLGAKVTGAVK-SGDGAKVTFEPVKGGEATTLDAEVVLIATGRK  299 (491)
T ss_dssp             HHHHHHHHHHH-----HTTCEEECSEEEEEEEE-ETTEEEEEEEETTSCCCEEEEESEEEECCCCE
T ss_pred             HHHHHHHHHHH-----hCCCEEEECCeEEEEEE-eCCEEEEEEEecCCCceEEEEcCEEEEeeCCc
Confidence            34444444444     45789999999999998 67776665542   4  578999999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=82.18  E-value=1.5  Score=44.45  Aligned_cols=54  Identities=13%  Similarity=0.233  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|+. .+++  |...+|+++.+|.||+|+...
T Consensus       228 ~~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~~~~--v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          228 YEMAAYVHEHMK-----NHDVELVFEDGVDALEE-NGAV--VRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEG-GGTE--EEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----HcCCEEEECCeEEEEec-CCCE--EEECCCCEEEcCEEEEccCCC
Confidence            345555555554     56789999999999987 4454  555778899999999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=82.17  E-value=1.8  Score=41.64  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             CCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          63 LGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      .|.+++++++|++|.. .+.  .|++.+|+++.+|+||+|+-.
T Consensus        75 ~~i~~~~~~~V~~id~-~~~--~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           75 NNIKVITSEFATSIDP-NNK--LVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             TTCEEECSCCEEEEET-TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             CCCEEEeCCEEEEEEC-CCC--EEEECCCCEEECCEEEEecCC
Confidence            4689999999999987 454  466678889999999999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=82.10  E-value=0.86  Score=45.00  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCce--EEcCCceEEEEecCCC--cEEEEeCC---C--cEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKK--LLLNKEVTKINWEDAN--GVLVTCAD---G--SQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~--I~ln~~V~~I~~~~~~--~v~v~~~~---G--~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.|.+.+.     ..|.+  |+++++|++|+. .++  +|.|++.+   |  .++.+|+||+|+-..
T Consensus       101 ~~l~~~l~~~~~-----~~gv~~~i~~~~~V~~v~~-~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~  165 (464)
T 2xve_A          101 EVLWDYIKGRVE-----KAGVRKYIRFNTAVRHVEF-NEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHF  165 (464)
T ss_dssp             HHHHHHHHHHHH-----HHTCGGGEECSEEEEEEEE-ETTTTEEEEEEEETTTTEEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHH-----HcCCcceEEeCCEEEEEEE-cCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCC
Confidence            455555554433     23345  999999999998 444  67777654   4  468999999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=81.57  E-value=2  Score=41.83  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +.|.+|+++++|++|.. + +++ .|.+ +|.++.+|.||+|+...
T Consensus       191 ~~~~~~l~~~l~-----~~gv~i~~~~~v~~i~~-~-~~v~~v~~-~~~~i~~d~vi~a~G~~  245 (447)
T 1nhp_A          191 KEFTDVLTEEME-----ANNITIATGETVERYEG-D-GRVQKVVT-DKNAYDADLVVVAVGVR  245 (447)
T ss_dssp             HHHHHHHHHHHH-----TTTEEEEESCCEEEEEC-S-SBCCEEEE-SSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHH-----hCCCEEEcCCEEEEEEc-c-CcEEEEEE-CCCEEECCEEEECcCCC
Confidence            345556666665     56799999999999987 4 443 4555 45689999999999763

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=81.47  E-value=2.3  Score=42.14  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=38.8

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCcc
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      .+.+.+.+.+.     +.|.+|+++++|++|+. + +++ .|.+ +|+++.+|.||+|+...
T Consensus       237 ~~~~~l~~~l~-----~~GV~i~~~~~v~~i~~-~-~~v~~v~~-~g~~i~~D~Vi~a~G~~  290 (490)
T 2bc0_A          237 DLTDLMAKNME-----EHGIQLAFGETVKEVAG-N-GKVEKIIT-DKNEYDVDMVILAVGFR  290 (490)
T ss_dssp             HHHHHHHHHHH-----TTTCEEEETCCEEEEEC-S-SSCCEEEE-SSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHH-----hCCeEEEeCCEEEEEEc-C-CcEEEEEE-CCcEEECCEEEECCCCC
Confidence            44555555554     56899999999999986 3 333 3555 66789999999998753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=81.26  E-value=1.7  Score=44.04  Aligned_cols=42  Identities=14%  Similarity=0.055  Sum_probs=35.5

Q ss_pred             ceEEcCCceEEEEecC-CCcEEEEeCCCcEEEcCEEEEcCCcc
Q psy7654          65 KKLLLNKEVTKINWED-ANGVLVTCADGSQYSADKVLITVSLG  106 (373)
Q Consensus        65 ~~I~ln~~V~~I~~~~-~~~v~v~~~~G~~~~ad~VIvtiP~~  106 (373)
                      ..|+++++|++++... .+.|.|++.+|+++.||+||+|+-..
T Consensus       104 ~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~  146 (545)
T 3uox_A          104 KHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPL  146 (545)
T ss_dssp             GGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSC
T ss_pred             CcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCC
Confidence            3799999999999833 24689999999899999999999853

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=81.12  E-value=1.6  Score=42.62  Aligned_cols=44  Identities=9%  Similarity=0.057  Sum_probs=33.3

Q ss_pred             CCCceEEcCCceEEEEecC--CCc--EEEEeCCCc----EEEcCEEEEcCCc
Q psy7654          62 DLGKKLLLNKEVTKINWED--ANG--VLVTCADGS----QYSADKVLITVSL  105 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~--~~~--v~v~~~~G~----~~~ad~VIvtiP~  105 (373)
                      .+|.+|+++++|++|+...  ++.  +.|++.+|+    ++.+|+||+|+-.
T Consensus       139 ~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          139 HFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             TCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            3457899999999999821  333  367766665    7899999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=80.77  E-value=2.5  Score=41.93  Aligned_cols=55  Identities=15%  Similarity=0.016  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA--DG--SQYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G--~~~~ad~VIvtiP~~  106 (373)
                      ..+.+.+.+.+.     +. .+|+++++|++|+. .++++.|+..  +|  +++.+|.||+|+...
T Consensus       215 ~~~~~~l~~~l~-----~~-V~i~~~~~v~~i~~-~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~  273 (492)
T 3ic9_A          215 EEMKRYAEKTFN-----EE-FYFDAKARVISTIE-KEDAVEVIYFDKSGQKTTESFQYVLAATGRK  273 (492)
T ss_dssp             HHHHHHHHHHHH-----TT-SEEETTCEEEEEEE-CSSSEEEEEECTTCCEEEEEESEEEECSCCE
T ss_pred             HHHHHHHHHHHh-----hC-cEEEECCEEEEEEE-cCCEEEEEEEeCCCceEEEECCEEEEeeCCc
Confidence            445555555554     22 78999999999998 6777777764  66  578999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	373
d1b5qa2	112	d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea	1e-17
d1b5qa2	112	d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea	1e-04
d2v5za2	112	d.16.1.5 (A:290-401) Monoamine oxidase B {Human (H	7e-16
d2dw4a3	109	d.16.1.5 (A:655-763) Lysine-specific histone demet	2e-14
d2dw4a3	109	d.16.1.5 (A:655-763) Lysine-specific histone demet	8e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-11
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-10
d2iida2	113	d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan	2e-10
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-09
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-08
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	0.001
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.002
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	0.002
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	0.002
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	0.004

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 112

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 76.0 bits (186), Expect = 1e-17
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
           +    K+F++FP+K+WP+      F +                    +      F     
Sbjct: 2   MAVYTKIFLKFPRKFWPEGKGREFFLYASSRR--------------GYYGVWQEFEKQYP 47

Query: 244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHF 303
           D    L  ++   +R +E  SDEQ K E M+  R        +P+ + +    W +++ +
Sbjct: 48  DANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFP-GKDVPDATDILVPRWWSDRFY 106

Query: 304 KGSYS 308
           KG++S
Sbjct: 107 KGTFS 111

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 112

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 132 LGTVDKVFVRFPQKWWPDDIRGYNFFW-THDDKKNPLFKDTAVVDGAPWISLFL 184
           +    K+F++FP+K+WP+      F + +       ++++         + L  
Sbjct: 2   MAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVT 55

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 7e-16
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 184 LGTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTE 243
           LG+V K  V + + +W      Y      D E+               +           
Sbjct: 2   LGSVIKCIVYYKEPFWRKK--DYCGTMIIDGEE-------------APVAYTLDDTKPEG 46

Query: 244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHF 303
           +    +G+I    AR +  L+ E+   +  + +      +    EP      +W   ++ 
Sbjct: 47  NYAAIMGFILAHKARKLARLTKEERLKKLCELYAKV-LGSLEALEPVHYEEKNWCEEQYS 105

Query: 304 KGSYSIY 310
            G Y+ Y
Sbjct: 106 GGCYTTY 112

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 185 GTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTED 244
           G ++KV + F + +W   V  +    +                      +L+ F+   + 
Sbjct: 3   GNLNKVVLCFDRVFWDPSVNLFGHVGSTT----------------ASRGELFLFWNLYKA 46

Query: 245 PLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFK 304
           P+  L  ++G +A  ME +SD+ I    +   +   G++  +P+P     S W  +   +
Sbjct: 47  PI-LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADPWAR 104

Query: 305 GSYS 308
           GSYS
Sbjct: 105 GSYS 108

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 5/30 (16%), Positives = 13/30 (43%)

Query: 133 GTVDKVFVRFPQKWWPDDIRGYNFFWTHDD 162
           G ++KV + F + +W   +  +    +   
Sbjct: 3   GNLNKVVLCFDRVFWDPSVNLFGHVGSTTA 32

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 1e-11
 Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 6/177 (3%)

Query: 194 FPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWIS 253
             + W  DD   +                         +         T      +   +
Sbjct: 275 SLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNT 334

Query: 254 GASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSY-SIYTL 312
            ++++      D  + T  +   +    A   +P         W T+   +         
Sbjct: 335 RSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE-----WKTSAVQRMVAAGSSGN 389

Query: 313 TTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGWREADRILKS 369
             D M        +     Q    L FAGE +  +   TV+GA+ +G REA RI   
Sbjct: 390 DYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ 446

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 39  WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADK 98
              GG          Q+  +    LG ++ L + V  I+      VLV   +   Y A  
Sbjct: 196 TTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTR-ENVLVETLNHEMYEAKY 254

Query: 99  VLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFW 158
           V+  +   +     I F PPLP  +  +I  +F   +   + R  ++           ++
Sbjct: 255 VISAIPPTLGMK--IHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVD------RIYF 306

Query: 159 --THDDKKNPLFKDTAVVDG 176
             T        + + AV  G
Sbjct: 307 AGTETATHWSGYMEGAVEAG 326

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 18/126 (14%)

Query: 185 GTVDKVFVRFPQKWWPDDVRGYNFFWTHDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTED 244
            +  K+F+    K+W DD  G +   +  D               P     Y  +  T  
Sbjct: 3   RSGTKIFLTCTTKFWEDD--GIHGGKSTTDL--------------PSRFIYYPNHNFTNG 46

Query: 245 PLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLG--ANYTIPEPSRVFHSSWGTNKH 302
               + +  G  A F + L  +                                W  +K+
Sbjct: 47  VGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKY 106

Query: 303 FKGSYS 308
             G  +
Sbjct: 107 AMGGIT 112

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 56.9 bits (135), Expect = 1e-09
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 75  KINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGT 134
           +       GV V   D S YSAD V+++ SLGV +SDLI F P LP  K   I   +   
Sbjct: 234 REIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVG 293

Query: 135 VDKVFVRFPQKWWPDD 150
           V++    + Q   P  
Sbjct: 294 VNR--YEYDQLRAPVG 307

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 13/179 (7%)

Query: 2   DFLGKAQNSLDASDSWFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPI 61
                +  ++D         +  Y SF+     +D    +  +  +    + ++P     
Sbjct: 188 KEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEI-VDGMDKLPTAMYR 246

Query: 62  DLGKKLLLNKEVTKINWEDANGVLVT----CADGSQYSADKVLITVSLGVFKSDLITFVP 117
           D+  K+  N +V KI   D   V V       +    +AD V++  +    +  LI F P
Sbjct: 247 DIQDKVHFNAQVIKIQQND-QKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNP 303

Query: 118 PLPPQKKNIIESLFLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDG 176
           PL P+K + + S+F       F  F         +G  +F      +   + D+ +  G
Sbjct: 304 PLLPKKAHALRSVFTP---YQFQHFSDPLT--ASQGRIYFAGEYTAQAHGWIDSTIKSG 357

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 22  AKRYNSFVTHEGCEDTVWKKG--GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWE 79
           A          G E           G +L   L     +     G K++ N  V  +   
Sbjct: 53  ACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVG-V 111

Query: 80  DANGVLVTCADGSQYSADKVLITVSLGV 107
            +  +L+   DG +   D ++  V  G+
Sbjct: 112 SSGKLLIKLKDGRKVETDHIVAAV--GL 137

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 17  WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76
                   Y   V   G    ++   G G + +   +          G   +L+  + ++
Sbjct: 208 PSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLS-----AIYGGTYMLDTPIDEV 262

Query: 77  NWEDANG-VLVTCADGSQYSADKVLITVS 104
            ++   G           + A  V+   +
Sbjct: 263 LYKKDTGKFEGVKTKLGTFKAPLVIADPT 291

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 17  WFETSAKRYNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKI 76
               + K  +  VT     +    +G    + + L KQ+        G ++L  +   K+
Sbjct: 37  GIFNAYKPKDGQVTLCYRGEM-ILRGFDHTLREELTKQL-----TANGIQILTKENPAKV 90

Query: 77  NWEDANGVLVTCADGSQYSADKVLITV 103
                    VT   G +   D V++ +
Sbjct: 91  ELNADGSKSVTFESGKKMDFDLVMMAI 117

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 6/42 (14%), Positives = 14/42 (33%)

Query: 62  DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV 103
             G +L  N     +       + +   DG   + D ++  +
Sbjct: 74  AEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI 115

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 12/123 (9%)

Query: 25  YNSFVTHEGCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV 84
             +    +         GG   ++  L           LG    +   V  +  ED  G 
Sbjct: 202 LPAGTAPKLSGALSTFDGGLQVLIDALAAS--------LGDAAHVGARVEGLARED-GGW 252

Query: 85  LVTCADGSQ---YSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIESLFLGTVDKVFVR 141
            +   +  +    S  +V++          L      L      I     L  V  +   
Sbjct: 253 RLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDAA 312

Query: 142 FPQ 144
             +
Sbjct: 313 LQR 315

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	373
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.65
d1b5qa2	112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.65
d2dw4a3	109	Lysine-specific histone demethylase 1, LSD1 {Human	99.61
d2iida2	113	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.51
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.88
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.8
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.76
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.6
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.43
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.23
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.21
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.12
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.67
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.31
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.11
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.87
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.82
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.82
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.74
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.73
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.46
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.43
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.42
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.33
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.95
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.67
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.57
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.49
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.4
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.14
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.03
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.77
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.75
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.58
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.42
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.26
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.32
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.83
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.78
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.25
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	91.09
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.96
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	88.76
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	86.75
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	86.62
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.14
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.87
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	80.84
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	80.8

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-16  Score=126.39  Aligned_cols=68  Identities=21%  Similarity=0.361  Sum_probs=61.5

Q ss_pred             CCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCccccccccc
Q psy7654         242 TEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSIY  310 (373)
Q Consensus       242 ~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~~  310 (373)
                      .+++++|++|++|+.|.+++.++++++++.++++|+++||. ..+++|..+.+++|.+|||++|+|+.+
T Consensus        45 ~~~~~vL~~~~~G~~a~~~~~ls~~e~~~~~l~~L~~~~g~-~~~~~~~~~~~~~W~~dp~~~GsYs~~  112 (112)
T d2v5za2          45 EGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGS-LEALEPVHYEEKNWCEEQYSGGCYTTY  112 (112)
T ss_dssp             TSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTC-GGGGCCSEEEEEEGGGCTTTCSSSCBC
T ss_pred             cCCCcEEEEEeCcHHHHHHHhCCHHHHHHHHHHHHHHHhCc-cccCCccEEEEcccCCCCccCcccccc
Confidence            44567999999999999999999999999999999999995 246789999999999999999999864

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.65  E-value=4.9e-16  Score=124.13  Aligned_cols=66  Identities=26%  Similarity=0.487  Sum_probs=60.3

Q ss_pred             CCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCcccccccc
Q psy7654         243 EDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSI  309 (373)
Q Consensus       243 ~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~  309 (373)
                      .+.++|++|++|+.|.+++.++++++++.++++|+++||. ...++|..+.+++|..|||++|+|+.
T Consensus        47 ~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~L~~~~~~-~~~~~~~~~~~t~W~~dp~~~GsYS~  112 (112)
T d1b5qa2          47 PDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPG-KDVPDATDILVPRWWSDRFYKGTFSN  112 (112)
T ss_dssp             TTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCTT-SCCCCCSEEECCCTTTCTTTSSSEEE
T ss_pred             CCCCEEEEEeCcHHHHHHHhCCHHHHHHHHHHHHHHHhCc-ccccCCCEEEeccCCCCCCccccCCC
Confidence            4467999999999999999999999999999999999985 35678999999999999999999974

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.2e-15  Score=119.42  Aligned_cols=65  Identities=26%  Similarity=0.544  Sum_probs=59.1

Q ss_pred             CCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCceEEeccCCCCCcccccccc
Q psy7654         244 DPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPSRVFHSSWGTNKHFKGSYSI  309 (373)
Q Consensus       244 ~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G~~~~  309 (373)
                      +.++|++|+.|+.|..+..++++++++.++++|++++|.+ ..++|..+.+++|.+|||++|+|++
T Consensus        45 ~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~L~~~~~~~-~~~~~~~~~~~~W~~dp~~~GsYSy  109 (109)
T d2dw4a3          45 KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSYSY  109 (109)
T ss_dssp             -CCEEEEEECHHHHHHHTTSCHHHHHHHHHHHHHHHHCTT-TCCCCSEEEECCTTTCTTTSSSCEE
T ss_pred             CCCEEEEEECcHHHHHHHhcCHHHHHHHHHHHHHHHhCcc-ccCcccEEEEeccCCCCccCEecCC
Confidence            3569999999999999999999999999999999999953 4678999999999999999999974

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.51  E-value=6e-15  Score=118.00  Aligned_cols=67  Identities=10%  Similarity=0.101  Sum_probs=56.4

Q ss_pred             CCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCC-C-CCCCceEEeccCCCCCcccccccc
Q psy7654         243 EDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANY-T-IPEPSRVFHSSWGTNKHFKGSYSI  309 (373)
Q Consensus       243 ~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~-~-~~~~~~~~~~~W~~dp~~~G~~~~  309 (373)
                      ++.++|++|++|+.|.++..++++++++.++++|+++||... + .+.+..+.+++|.+|||++|+|+.
T Consensus        45 ~~~~vL~~~~~g~~a~~~~~l~~e~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~W~~dp~~~GaYSs  113 (113)
T d2iida2          45 NGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITT  113 (113)
T ss_dssp             TSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEEC
T ss_pred             CCceEEEEEeCCchhHHHHcCCHHHHHHHHHHHHHHHcCCcccccccccCeEEEeecCCCCCccccCCC
Confidence            345799999999999999999999999999999999998520 0 112567888999999999999974

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.88  E-value=4.4e-09  Score=91.56  Aligned_cols=66  Identities=45%  Similarity=0.646  Sum_probs=58.1

Q ss_pred             CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCCCHHHHHHHh
Q psy7654          62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPLPPQKKNIIE  128 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~Lp~~~~~ai~  128 (373)
                      ..+..++++++|..|.. .++++.|++.+|+.+.+|++|+++|+..+....+.|.|.||..+..++.
T Consensus       222 ~~~~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~  287 (347)
T d1b5qa1         222 IVDPRLQLNKVVREIKY-SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY  287 (347)
T ss_dssp             BCCTTEESSCCEEEEEE-CSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH
T ss_pred             hcccccccccccccccc-cCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH
Confidence            55678999999999999 8889999999999999999999999999887667888989888777654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.5e-09  Score=94.56  Aligned_cols=82  Identities=26%  Similarity=0.414  Sum_probs=73.7

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccccccccccCCCC
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVFKSDLITFVPPL  119 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l~~~~i~f~p~L  119 (373)
                      ..+|++.++++|++...        ++|++|++|++|.. ++++|.|++.+|++++||+||+|+|+.++.+  +.|.|+|
T Consensus       205 ~~~~~~~~~~~l~~~~g--------~~i~~~~~v~~I~~-~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~--~~~~p~l  273 (383)
T d2v5za1         205 FVGGSGQVSERIMDLLG--------DRVKLERPVIYIDQ-TRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPL  273 (383)
T ss_dssp             ETTCTHHHHHHHHHHHG--------GGEEESCCEEEEEC-SSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCC
T ss_pred             eccchhHHHHHHHHHcC--------CeEEecCcceEEEe-cCCeEEEEECCCCEEECCEEEECCCHHHHhh--CccCCCC
Confidence            38999999999998654        79999999999999 8899999999999999999999999999988  7899999


Q ss_pred             CHHHHHHHhcCCC
Q psy7654         120 PPQKKNIIESLFL  132 (373)
Q Consensus       120 p~~~~~ai~~~~~  132 (373)
                      |..+.++++++..
T Consensus       274 ~~~~~~~~~~~~~  286 (383)
T d2v5za1         274 PMMRNQMITRVFP  286 (383)
T ss_dssp             CHHHHHHTTSCCC
T ss_pred             CHHHHHHHHHhcc
Confidence            9999888877543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.76  E-value=1.4e-08  Score=92.48  Aligned_cols=80  Identities=24%  Similarity=0.403  Sum_probs=69.5

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe----CCCcEEEcCEEEEcCCccccccccccc
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC----ADGSQYSADKVLITVSLGVFKSDLITF  115 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~----~~G~~~~ad~VIvtiP~~~l~~~~i~f  115 (373)
                      ..+|+..|+++|++...        ++|++|++|++|.. +++++.|..    .++++++||+||+|+|+.+++.  |.|
T Consensus       233 ~~~~~~~l~~~l~~~~g--------~~i~~~~~V~~I~~-~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~--i~~  301 (370)
T d2iida1         233 IVDGMDKLPTAMYRDIQ--------DKVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKF  301 (370)
T ss_dssp             ETTCTTHHHHHHHHHTG--------GGEESSCEEEEEEE-CSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTT--SEE
T ss_pred             chhhHHHHHHHHHHhcC--------CccccCceEEEEEE-eCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhh--Ccc
Confidence            58999999999998664        79999999999999 788877654    2346899999999999999988  889


Q ss_pred             CCCCCHHHHHHHhcC
Q psy7654         116 VPPLPPQKKNIIESL  130 (373)
Q Consensus       116 ~p~Lp~~~~~ai~~~  130 (373)
                      +|+||..+.++++.+
T Consensus       302 ~p~l~~~~~~ai~~~  316 (370)
T d2iida1         302 NPPLLPKKAHALRSV  316 (370)
T ss_dssp             ESCCCHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999888765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.4e-09  Score=94.51  Aligned_cols=73  Identities=27%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             ceEEeccCCCCCcccccccccc---------ccCCccccchHhhcccccCCCCCceEEEeccccCCCCcchhhHHHHHHH
Q psy7654         290 SRVFHSSWGTNKHFKGSYSIYT---------LTTDKMNASRHDLEAPLSNGQGKQVLLFAGEASNEHQYGTVNGAVETGW  360 (373)
Q Consensus       290 ~~~~~~~W~~dp~~~G~~~~~~---------~g~~~~~~~~~~l~~p~~~~~~~~~i~fAGd~~s~~~~g~veGA~~SG~  360 (373)
                      .....++|..+++.++.+....         |+...  ...+.+.+|++      |||||||+|+..++||||||++||.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~------~l~fAGe~t~~~~~g~~~GA~~SG~  437 (449)
T d2dw4a2         366 FVPPLPEWKTSAVQRMVAAGSSGNDYDLMAQPITPG--PSIPGAPQPIP------RLFFAGEHTIRNYPATVHGALLSGL  437 (449)
T ss_dssp             EESCCCHHHHHHHHHSCBTTCCHHHHHHHHCCBCC-----------CCC------CEEECSGGGCTTSCSSHHHHHHHHH
T ss_pred             cCcccccchhhhhhcccccccccchhhhhcCCcccc--ccchhhcCCCC------CEEEEcCCcCCCCceehHHHHHHHH
Confidence            3445678888887766554321         22111  23344555554      8999999999888899999999999


Q ss_pred             HHHHHHHhhC
Q psy7654         361 READRILKSD  370 (373)
Q Consensus       361 ~AA~~i~~~~  370 (373)
                      +||++|++.+
T Consensus       438 ~aA~~Il~~~  447 (449)
T d2dw4a2         438 REAGRIADQF  447 (449)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999853

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.43  E-value=3.9e-07  Score=71.49  Aligned_cols=104  Identities=14%  Similarity=0.265  Sum_probs=79.8

Q ss_pred             CCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccc
Q psy7654         131 FLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFW  210 (373)
Q Consensus       131 ~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~  210 (373)
                      .|.++..|.|.|++.-.+. .+|++++.+..+...                 ++                          
T Consensus         1 ~Ya~vavV~l~~~~~~~~~-~~GfG~LVP~~e~~~-----------------~l--------------------------   36 (108)
T d2ivda2           1 AYAPIAVVHLGFDAGTLPA-PDGFGFLVPAEEQRR-----------------ML--------------------------   36 (108)
T ss_dssp             CBCCEEEEEEEECTTSSCC-CCSSEEECCGGGCCS-----------------CC--------------------------
T ss_pred             CCCCEEEEEEEEcHHHCCC-CCceEEEccCCCCCe-----------------EE--------------------------
Confidence            4889999999999876654 379999965432210                 11                          


Q ss_pred             cCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCc
Q psy7654         211 THDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPS  290 (373)
Q Consensus       211 ~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~  290 (373)
                                       +..|.+..|+... +++..+|++|++|.....+..++|+++++.++++|++++|.   ..+|.
T Consensus        37 -----------------g~~f~S~~fp~r~-p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a~~dL~~~lgi---~~~P~   95 (108)
T d2ivda2          37 -----------------GAIHASTTFPFRA-EGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGV---TARPS   95 (108)
T ss_dssp             -----------------EEEEHHHHCGGGB-STTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHHHHHHCC---CSCCS
T ss_pred             -----------------EEEEEcccccccc-CCCCEEEEEEeCCCCCcccccCCHHHHHHHHHHHHHHHhCC---CCCCc
Confidence                             1356666666443 45567788999998888888999999999999999999996   35799


Q ss_pred             eEEeccCCC
Q psy7654         291 RVFHSSWGT  299 (373)
Q Consensus       291 ~~~~~~W~~  299 (373)
                      ...+++|.+
T Consensus        96 ~~~v~rw~~  104 (108)
T d2ivda2          96 FTRVFRWPL  104 (108)
T ss_dssp             EEEEEEESS
T ss_pred             EEEeeECCC
Confidence            999999986

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.23  E-value=3.1e-07  Score=72.58  Aligned_cols=108  Identities=17%  Similarity=0.270  Sum_probs=79.4

Q ss_pred             CCcceeEEEEEcCCCCCCCCCCceeEEecCCCCCCCCcccccccCCCCccccccccccceeecCCCCCCCCCCCCCCccc
Q psy7654         131 FLGTVDKVFVRFPQKWWPDDIRGYNFFWTHDDKKNPLFKDTAVVDGAPWISLFLGTVDKVFVRFPQKWWPDDVRGYNFFW  210 (373)
Q Consensus       131 ~~~~~~kv~l~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~  210 (373)
                      .|.++..|.+.|+++-.+....|++++.+..+...++              .++|                         
T Consensus         1 ~Ya~va~V~l~~~~~~~~~~~~GfG~LVP~~e~~~g~--------------~~lg-------------------------   41 (112)
T d1seza2           1 DYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGL--------------KTLG-------------------------   41 (112)
T ss_dssp             CEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTC--------------CSSE-------------------------
T ss_pred             CCCcEEEEEEEEchHHcCCCCCceEEEeCCcccCCCc--------------eEEE-------------------------
Confidence            4788999999999887766678999996543210000              0111                         


Q ss_pred             cCCCCCCcccccccccCCCcceeeeeeeeecCCCCceEEEEecchhhHHhhcCCHHHHHHHHHHHHHHHhCCCCCCCCCc
Q psy7654         211 THDDEKNPLFKDTAVVDGAPWIVDLYGFYLTTEDPLTFLGWISGASARFMETLSDEQIKTESMKAFRFFLGANYTIPEPS  290 (373)
Q Consensus       211 ~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~ls~e~~~~~~~~~L~~~~g~~~~~~~~~  290 (373)
                                        ..|.+..|.... +.+..+|++|++|.....+..++|+++++.++++|++++|.   ..+|.
T Consensus        42 ------------------~~f~S~~fp~r~-p~~~~ll~~~~Gg~~~~~~~~~~d~~l~~~a~~dl~~~lgi---~~~P~   99 (112)
T d1seza2          42 ------------------TLFSSMMFPDRA-PNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGA---EGEPT   99 (112)
T ss_dssp             ------------------EEEHHHHCGGGS-CTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCB---CSCCS
T ss_pred             ------------------EEEecccCCCcC-CCCcEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCC---CCCcc
Confidence                              345555565433 44456788999998877788899999999999999999996   35899


Q ss_pred             eEEeccCCC
Q psy7654         291 RVFHSSWGT  299 (373)
Q Consensus       291 ~~~~~~W~~  299 (373)
                      ...+++|.+
T Consensus       100 ~~~v~rw~~  108 (112)
T d1seza2         100 YVNHLYWSK  108 (112)
T ss_dssp             SEEEEEEEE
T ss_pred             EEEEEECCc
Confidence            999999975

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.21  E-value=6.3e-07  Score=79.57  Aligned_cols=80  Identities=13%  Similarity=0.258  Sum_probs=59.9

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEcCCcccccccccccC
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-DG--SQYSADKVLITVSLGVFKSDLITFV  116 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-~G--~~~~ad~VIvtiP~~~l~~~~i~f~  116 (373)
                      .+||+++++++|++.+.        ++|++|++|++|+. +++++.|.+. +|  +++.||+||+|+|+..+.+  | + 
T Consensus       217 ~~~g~~~~~~~l~~~~g--------~~i~~~~~V~~I~~-~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~--L-l-  283 (347)
T d2ivda1         217 FDGGLQVLIDALAASLG--------DAAHVGARVEGLAR-EDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAK--L-L-  283 (347)
T ss_dssp             ETTCTHHHHHHHHHHHG--------GGEESSEEEEEEEC-C--CCEEEEEETTEEEEEECSEEEECSCHHHHHH--H-H-
T ss_pred             cCCchHHHHHHHHHHhh--------cccccCCEEEEEEE-eCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHH--h-c-
Confidence            48999999999998764        79999999999998 7777766553 33  4689999999999998877  2 2 


Q ss_pred             CCCCHHHHHHHhcCCC
Q psy7654         117 PPLPPQKKNIIESLFL  132 (373)
Q Consensus       117 p~Lp~~~~~ai~~~~~  132 (373)
                      +++++...+.+.++..
T Consensus       284 ~~~~~~~~~~~~~~~~  299 (347)
T d2ivda1         284 RPLDDALAALVAGIYN  299 (347)
T ss_dssp             TTTCHHHHHHHHTCCB
T ss_pred             cCCCHHHHHHhhccee
Confidence            3455555556665543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=9.2e-07  Score=76.03  Aligned_cols=61  Identities=10%  Similarity=0.153  Sum_probs=50.3

Q ss_pred             eeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEc
Q psy7654          37 TVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA-NGVLVTCADGSQYSADKVLIT  102 (373)
Q Consensus        37 ~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~-~~v~v~~~~G~~~~ad~VIvt  102 (373)
                      +.+++||+++|+++|++.+.     ++|++|++|++|++|....+ +++...+.+|++++||+||++
T Consensus       228 ~~~~~gG~~~l~~~l~~~~~-----~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         228 YLYPMYGLGELPQGFARLSA-----IYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             EEEETTCTTHHHHHHHHHHH-----HTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             ceeccCcHHHHHHHHHHHHH-----hcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            34569999999999999887     78999999999999987333 446545567889999999987

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.31  E-value=0.00019  Score=56.05  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.++++|++|++|+.+.++.+.|++++|++++||.||+|+
T Consensus        64 ~~~~~~l~~~l~-----~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          64 HTLREELTKQLT-----ANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             hHHHHHHHHHHH-----hcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            666677777776     668999999999999974566788999999999999999986

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00043  Score=55.59  Aligned_cols=53  Identities=17%  Similarity=0.315  Sum_probs=45.0

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCC
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVS  104 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP  104 (373)
                      .+.+.+.+.+.     ++|.++++|+.|++|+. +++++.|++++|+++.+|.||+|+-
T Consensus        84 ~~~~~~~~~l~-----~~GV~~~~~~~V~~i~~-~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          84 YLSNWTMEKVR-----REGVKVMPNAIVQSVGV-SSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHH-----TTTCEEECSCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHH-----hCCcEEEeCCEEEEEEe-cCCEEEEEECCCCEEECCEEEEeec
Confidence            45555566665     67899999999999998 7888999999999999999999973

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00074  Score=52.53  Aligned_cols=54  Identities=15%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.++++|+.|++|..+.++.+.+++++|+++.+|.||+|+
T Consensus        62 ~~~~~~~~~~l~-----~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~  115 (116)
T d1gesa2          62 PMISETLVEVMN-----AEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI  115 (116)
T ss_dssp             HHHHHHHHHHHH-----HHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             hhhHHHHHHHHH-----HCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEec
Confidence            445555556555     567999999999999984455688999999999999999986

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.82  E-value=0.001  Score=51.61  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.+|++|+.|++|..+.++...+.+++|+++.+|.||+|+
T Consensus        62 ~~~~~~~~~~l~-----~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~  115 (117)
T d1feca2          62 SELRKQLTEQLR-----ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI  115 (117)
T ss_dssp             HHHHHHHHHHHH-----HTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             chhhHHHHHHHh-----hCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEec
Confidence            456666666665     567999999999999983445567888999999999999986

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.82  E-value=0.00058  Score=59.43  Aligned_cols=63  Identities=22%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             cCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc------EEEE--e---CCCcEEEcCEEEEcCCcccc
Q psy7654          40 KKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG------VLVT--C---ADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        40 ~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~------v~v~--~---~~G~~~~ad~VIvtiP~~~l  108 (373)
                      .++|+++|+++|++.+.+       .+|++|++|++|+. ++++      ..|.  .   ..++++.+|+||+|+|.+.+
T Consensus       226 ~~~g~~~l~~~l~~~l~~-------~~i~~~~~V~~i~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l  297 (373)
T d1seza1         226 FLGGMQTLTDAICKDLRE-------DELRLNSRVLELSC-SCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDV  297 (373)
T ss_dssp             ETTCTHHHHHHHHTTSCT-------TTEETTCCEEEEEE-ECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHH
T ss_pred             ecccchHHHHHHHHHhcc-------ceEecCCEEEEEEE-eCCcccccccceEEecccCCCCceEEECCEEEECCchHHh
Confidence            489999999999998863       68999999999998 4332      2232  2   12456899999999999887


Q ss_pred             cc
Q psy7654         109 KS  110 (373)
Q Consensus       109 ~~  110 (373)
                      +.
T Consensus       298 ~~  299 (373)
T d1seza1         298 KS  299 (373)
T ss_dssp             HT
T ss_pred             hh
Confidence            66

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.74  E-value=0.00068  Score=60.01  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..+..+|.+.+.     ++|++|+.|++|++|+. .+++|.|.+++| ++.||+||+|+-.+.
T Consensus       150 ~~~~~~l~~~a~-----~~Gv~i~~~~~V~~i~~-~~~~v~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         150 ENCIRAYRELAE-----ARGAKVLTHTRVEDFDI-SPDSVKIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-CSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             cccccccccccc-----cccccccCCcEEEEEEE-ECCEEEEEECCc-EEEcCEEEECCCCcc
Confidence            678888888776     67899999999999999 888999999888 799999999987754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.73  E-value=0.0014  Score=51.01  Aligned_cols=54  Identities=20%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEE-EcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQY-SADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~-~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.++++|+.|++|+...++++.+++.+|++. .+|.||+|+
T Consensus        63 ~~~~~~~~~~l~-----~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          63 ESVINVLENDMK-----KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHHHHHH-----hCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            556666666665     557999999999999984556788999999887 479999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.46  E-value=0.0017  Score=56.31  Aligned_cols=61  Identities=25%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          41 KGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        41 ~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ......+++.|.+.+.     +.|++|+++++|++|.. +++++ .|.+.+|++++||+||+|+--..
T Consensus       106 ~~~~~~i~~~L~~~~~-----~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         106 SNKAQSVVDALLTRLK-----DLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             TCCHHHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             cccHHHHHHHHHHHHH-----HcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            4456788899988876     66899999999999998 66665 47888999999999999987643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.43  E-value=0.0011  Score=58.37  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ..++...|++.+.     ++|++|+.+++|++|++ +++.+.|.+.+| ++.||+||+|+-.+.
T Consensus       150 ~~~~~~~l~~~~~-----~~Gv~i~~~~~V~~i~~-~~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         150 PYFVCKAYVKAAK-----MLGAEIFEHTPVLHVER-DGEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEETTCCCCEEEC-SSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             cccchhHHHHHHH-----HcCCEEecceEEEeEEe-ecceEEEecCCe-EEEcCEEEECCCccH
Confidence            4678888887775     67899999999999998 788899999887 799999999988764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.42  E-value=0.0011  Score=58.86  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=28.8

Q ss_pred             eEEEeccccCCCCcchhhHHHHHHHHHHHHHHh
Q psy7654         336 VLLFAGEASNEHQYGTVNGAVETGWREADRILK  368 (373)
Q Consensus       336 ~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~  368 (373)
                      +||||||+++.. .+||++|+.||.+||..|..
T Consensus       335 ~v~~aGd~~~~~-~~~~~~a~~sG~~aA~~i~~  366 (370)
T d2iida1         335 RIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNL  366 (370)
T ss_dssp             TEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEecccccCC-CcccHHHHHHHHHHHHHHHh
Confidence            799999999764 68999999999999999965

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.33  E-value=0.0025  Score=49.64  Aligned_cols=53  Identities=28%  Similarity=0.324  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADG---SQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.++++|++|++|+. +++++.|+..++   +++.||.||+|+
T Consensus        63 ~ei~~~l~~~l~-----~~Gv~i~~~~~v~~i~~-~~~~v~v~~~~~~~~~~~~~D~vlvAv  118 (119)
T d3lada2          63 EQVAKEAQKILT-----KQGLKILLGARVTGTEV-KNKQVTVKFVDAEGEKSQAFDKLIVAV  118 (119)
T ss_dssp             HHHHHHHHHHHH-----HTTEEEEETCEEEEEEE-CSSCEEEEEESSSEEEEEEESEEEECS
T ss_pred             chhHHHHHHHHH-----hcCceeecCcEEEEEEE-eCCEEEEEEEECCCCEEEECCEEEEee
Confidence            556666666665     45789999999999999 788888776543   578999999986

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.95  E-value=0.0039  Score=55.55  Aligned_cols=57  Identities=26%  Similarity=0.232  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEcCCccc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV-LVTCADGSQYSADKVLITVSLGV  107 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v-~v~~~~G~~~~ad~VIvtiP~~~  107 (373)
                      ...+..+|.+.+.     ++|++|+.+++|++|.. +++++ .|.|.+| +++||+||+|+-.+.
T Consensus       147 p~~l~~~l~~~a~-----~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         147 AARAVQLLIKRTE-----SAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhhhhhHHhhhh-----cccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhH
Confidence            4567777777665     66899999999999999 67775 4888887 799999999997764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.005  Score=54.86  Aligned_cols=37  Identities=38%  Similarity=0.528  Sum_probs=33.4

Q ss_pred             ceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCC
Q psy7654         335 QVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDP  371 (373)
Q Consensus       335 ~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~  371 (373)
                      .+|+|||++++..+.|+|+||+.+|++||.+|+..+.
T Consensus       302 ~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~~  338 (383)
T d2v5za1         302 DRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMG  338 (383)
T ss_dssp             TTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CceEeccccccccCCcchHHHHHHHHHHHHHHHHHhc
Confidence            3799999999988889999999999999999988664

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.57  E-value=0.0034  Score=54.25  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             ceEEEeccccCCCCcchhhHHHHHHHHHHHHHHhhCCC
Q psy7654         335 QVLLFAGEASNEHQYGTVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       335 ~~i~fAGd~~s~~~~g~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      |+||||||++.+   .++++|+.||.+||+.|++.|.+
T Consensus       337 pglf~aGd~~~g---~~~~~A~~~G~~aA~~i~~~L~~  371 (373)
T d1seza1         337 PGLFYAGNHRGG---LSVGKALSSGCNAADLVISYLES  371 (373)
T ss_dssp             TTEEECCSSSSC---SSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEecCCCc---hhHHHHHHHHHHHHHHHHHHHhc
Confidence            489999999764   37999999999999999998865

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.49  E-value=0.0062  Score=46.87  Aligned_cols=52  Identities=25%  Similarity=0.354  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA-DG--SQYSADKVLIT  102 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~-~G--~~~~ad~VIvt  102 (373)
                      ..+.+.+.+.+.     +.|.+|++|+.|++|+. .++++.|+.. +|  +++.+|.||++
T Consensus        63 ~~~~~~l~~~l~-----~~GI~i~~~~~v~~i~~-~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLK-----KKGVEVVTNALAKGAEE-REDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEEESEEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHH-----hcCCEEEcCCEEEEEEE-cCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            346666666665     56799999999999998 6777776653 44  56899999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.40  E-value=0.012  Score=46.42  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=34.3

Q ss_pred             CCCceEEcCCceEEEEecCC-CcE-EEEeCCCcEEEcCEEEEcC
Q psy7654          62 DLGKKLLLNKEVTKINWEDA-NGV-LVTCADGSQYSADKVLITV  103 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~-~~v-~v~~~~G~~~~ad~VIvti  103 (373)
                      +.|.++++|+.|++|+...+ .++ .|.+++|+++.+|.||+|+
T Consensus        89 ~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~  132 (133)
T d1q1ra2          89 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI  132 (133)
T ss_dssp             HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECC
T ss_pred             ccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEee
Confidence            56789999999999988322 234 4778999999999999986

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.14  E-value=0.012  Score=45.68  Aligned_cols=52  Identities=21%  Similarity=0.285  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.++++|+.|++|+. ++ .+.+...+|+++.||.||+|+
T Consensus        72 ~~~~~~~~~~l~-----~~gv~~~~~~~v~~i~~-~~-~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          72 KEFTDVLTEEME-----ANNITIATGETVERYEG-DG-RVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHH-----TTTEEEEESCCEEEEEC-SS-BCCEEEESSCEEECSEEEECS
T ss_pred             hhhHHHHHHHhh-----cCCeEEEeCceEEEEEc-CC-CEEEEEeCCCEEECCEEEEEC
Confidence            345555555555     56899999999999986 43 443334577799999999986

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.012  Score=45.83  Aligned_cols=52  Identities=21%  Similarity=0.304  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc--EEEEeCCC-----cEEEcCEEEEc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG--VLVTCADG-----SQYSADKVLIT  102 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~--v~v~~~~G-----~~~~ad~VIvt  102 (373)
                      ..+.+.+.+.+.     +.|.+|++|+.|++|+. .+++  +.++..++     +++++|.|++|
T Consensus        64 ~ei~~~l~~~l~-----~~GV~i~~~~~v~~v~~-~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLK-----KQGLDFKLSTKVISAKR-NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEECSEEEEEEEE-ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhHHHHHHHHH-----hccceEEeCCEEEEEEE-eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            455566666665     56799999999999998 4444  44554433     46899999986

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.77  E-value=0.015  Score=45.48  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCA--DG--SQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~--~G--~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.++++|++|++|+. .++++.|++.  +|  +++++|.|++|+
T Consensus        67 ~~~~~~l~~~l~-----~~gv~~~~~~~v~~v~~-~~~g~~v~~~~~~g~~~~i~~D~vl~A~  123 (125)
T d1ojta2          67 RDLVKVWQKQNE-----YRFDNIMVNTKTVAVEP-KEDGVYVTFEGANAPKEPQRYDAVLVAA  123 (125)
T ss_dssp             HHHHHHHHHHHG-----GGEEEEECSCEEEEEEE-ETTEEEEEEESSSCCSSCEEESCEEECC
T ss_pred             hhHHHHHHHHHH-----HcCcccccCcEEEEEEE-cCCcEEEEEEeCCCCeEEEEcCEEEEec
Confidence            456666666666     56789999999999998 6777766553  33  479999999986

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.75  E-value=0.012  Score=51.19  Aligned_cols=60  Identities=17%  Similarity=0.378  Sum_probs=45.7

Q ss_pred             ecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc----EEEEeCCCcEEEcCEEEEcCCc
Q psy7654          39 WKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG----VLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        39 ~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~----v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ++......+++.|.+.+.     ++|++|+++++|++|.+ .++.    +.+ ..++++++||+||+|+--
T Consensus       103 ~~~~~a~~i~~~L~~~~~-----~~gV~i~~~~~V~~i~~-~~~~~~v~~~~-~~~~~~~~a~~VIiAtGG  166 (253)
T d2gqfa1         103 FCDEGAEQIVEMLKSECD-----KYGAKILLRSEVSQVER-IQNDEKVRFVL-QVNSTQWQCKNLIVATGG  166 (253)
T ss_dssp             EETTCTHHHHHHHHHHHH-----HHTCEEECSCCEEEEEE-CCSCSSCCEEE-EETTEEEEESEEEECCCC
T ss_pred             ccccchhHHHHHHHHHHH-----HcCCCeecCceEEEEEe-ecCCceeEEEE-ecCCEEEEeCEEEEcCCc
Confidence            345567788888888776     67799999999999998 4443    233 345668999999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.58  E-value=0.031  Score=43.27  Aligned_cols=49  Identities=20%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     ++|.++++|+.|+++..   +  .|++.+|+++.+|.||+|+
T Consensus        72 ~~~~~~~~~~l~-----~~GV~i~~~~~v~~~~~---~--~v~l~dg~~i~~D~vi~a~  120 (121)
T d1d7ya2          72 ATLADFVARYHA-----AQGVDLRFERSVTGSVD---G--VVLLDDGTRIAADMVVVGI  120 (121)
T ss_dssp             HHHHHHHHHHHH-----TTTCEEEESCCEEEEET---T--EEEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHH-----HCCcEEEeCCEEEEEeC---C--EEEECCCCEEECCEEEEee
Confidence            344455555555     66899999999999864   2  3567889999999999986

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.42  E-value=0.019  Score=44.54  Aligned_cols=52  Identities=25%  Similarity=0.408  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEE--eC-CC--cEEEcCEEEEc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVT--CA-DG--SQYSADKVLIT  102 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~--~~-~G--~~~~ad~VIvt  102 (373)
                      ..+.+.|.+.+.     +.|.+|++|+.|++|+. .++++.|+  .. +|  +++++|.|++|
T Consensus        66 ~~~~~~l~~~l~-----~~GI~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          66 AEIRKQFQRSLE-----KQGMKFKLKTKVVGVDT-SGDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             HHHHHHHHHHHH-----HSSCCEECSEEEEEEEC-SSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             hcchhhhhhhhh-----cccceEEcCCceEEEEE-ccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            566666666666     56789999999999998 66776554  33 33  45899999987

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.26  E-value=0.022  Score=51.44  Aligned_cols=44  Identities=23%  Similarity=0.058  Sum_probs=34.9

Q ss_pred             CCceEEcCCceEEEEecCCCcEEEEeCCC---c---EEEcCEEEEcCCccc
Q psy7654          63 LGKKLLLNKEVTKINWEDANGVLVTCADG---S---QYSADKVLITVSLGV  107 (373)
Q Consensus        63 ~G~~I~ln~~V~~I~~~~~~~v~v~~~~G---~---~~~ad~VIvtiP~~~  107 (373)
                      ++..|++|+.|++|+. .+++|.|++.++   +   +..||+||+|+-...
T Consensus       126 ~~~~I~~~t~V~~v~~-~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         126 LLPFIKLATDVLDIEK-KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             GGGGEECSEEEEEEEE-ETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             hhhcccCceEEEEEEe-cCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            3468999999999999 788998876532   1   457999999987643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.32  E-value=0.042  Score=41.93  Aligned_cols=52  Identities=27%  Similarity=0.357  Sum_probs=35.3

Q ss_pred             HHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCC-cEE-E---EeCCCcEEEcCEEEEcC
Q psy7654          46 NVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDAN-GVL-V---TCADGSQYSADKVLITV  103 (373)
Q Consensus        46 ~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~-~v~-v---~~~~G~~~~ad~VIvti  103 (373)
                      .+.+.+.+.+.     +.|.++++|+.|++|+. +++ .+. +   ...+++++++|.||+|+
T Consensus        64 ~~~~~~~~~l~-----~~gI~v~~~~~v~~i~~-~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          64 ETRAYVLDRMK-----EQGMEIISGSNVTRIEE-DANGRVQAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             HHHHHHHHHHH-----HTTCEEESSCEEEEEEE-CTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred             chhhhhhhhhh-----ccccEEEcCCEEEEEEe-cCCceEEEEEEEeCCCCEEEEcCEEEEEE
Confidence            34444444444     45689999999999998 544 332 2   22345678999999986

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.055  Score=41.86  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEe---CCC------cEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTC---ADG------SQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~---~~G------~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.+|++|++|++|+. +++++.++.   ..|      ....+|.||+|+
T Consensus        63 ~~~~~~~~~~l~-----~~Gv~i~~~~~v~~i~~-~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~  124 (125)
T d3grsa2          63 SMISTNCTEELE-----NAGVEVLKFSQVKEVKK-TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI  124 (125)
T ss_dssp             HHHHHHHHHHHH-----HTTCEEETTEEEEEEEE-ETTEEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred             hHHHHHHHHHHH-----HCCCEEEeCCEEEEEEE-cCCeEEEEEEEccCCcCcCccccccCCEEEEEe
Confidence            445566666665     56799999999999998 777765543   233      245799999986

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.78  E-value=0.022  Score=43.51  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCC--CcEEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCAD--GSQYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~--G~~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.+++++++|++|+.   +...+...+  ++++.||.||+|+
T Consensus        62 ~~~~~~l~~~l~-----~~gV~i~~~~~V~~i~~---~~~~~~~~~~~~~~i~~D~vi~A~  114 (115)
T d1lvla2          62 SELTAPVAESLK-----KLGIALHLGHSVEGYEN---GCLLANDGKGGQLRLEADRVLVAV  114 (115)
T ss_dssp             HHHHHHHHHHHH-----HHTCEEETTCEEEEEET---TEEEEECSSSCCCEECCSCEEECC
T ss_pred             chhHHHHHHHHH-----hhcceEEcCcEEEEEcC---CeEEEEEcCCCeEEEEcCEEEEec
Confidence            345555555555     55789999999999963   333333333  3579999999986

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.25  E-value=0.13  Score=45.87  Aligned_cols=56  Identities=13%  Similarity=0.233  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC-CCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          44 YGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED-ANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        44 ~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~-~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      +..-++.++++..      +-..|++|++|++++++. .++|.|++.+++++++|.||+|+-.
T Consensus        87 ~~~Yl~~~a~~~~------L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          87 ILRYINFVADKFD------LRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHHTT------GGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHcC------CcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecc
Confidence            4444555666542      113699999999999733 3569999999999999999999764

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.09  E-value=0.22  Score=47.52  Aligned_cols=66  Identities=14%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             CcceeeecCCcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecC-CCcE-EEEeCCCcEEEcCEEEEcC
Q psy7654          33 GCEDTVWKKGGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWED-ANGV-LVTCADGSQYSADKVLITV  103 (373)
Q Consensus        33 g~~~~~~~~gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~-~~~v-~v~~~~G~~~~ad~VIvti  103 (373)
                      |...++++..|.+.|+++|+....     -.|+...||++|.+|..+. ++++ .|...+|+++.+++||+.-
T Consensus       364 G~spflyp~YG~gEipQ~FcR~~A-----V~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         364 GNTPFLFPLYGQGELPQCFCRMCA-----VFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             SSSSEEEETTCTTHHHHHHHHHHH-----HTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             CCCCeEeecCCcchHHHHHHHHHH-----hcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence            445567788999999999987553     4568999999999998742 3344 4667889999999998764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.091  Score=44.27  Aligned_cols=41  Identities=32%  Similarity=0.423  Sum_probs=34.6

Q ss_pred             CCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCc
Q psy7654          62 DLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSL  105 (373)
Q Consensus        62 ~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~  105 (373)
                      ..|.+++++++|++|+. .+.  .|++++|+++.+|.||+|+..
T Consensus        95 ~~gI~~~~g~~V~~id~-~~~--~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          95 NGGVAVLTGKKVVQLDV-RDN--MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TCEEEEEETCCEEEEEG-GGT--EEEETTSCEEEEEEEEECCCE
T ss_pred             HCCeEEEeCCEEEEeec-cCc--eeeeccceeeccceEEEeeee
Confidence            56789999999999987 455  466788999999999999874

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.76  E-value=0.28  Score=37.47  Aligned_cols=54  Identities=22%  Similarity=0.236  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCC---CcEEEEeCCC---c--EEEcCEEEEcC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDA---NGVLVTCADG---S--QYSADKVLITV  103 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~---~~v~v~~~~G---~--~~~ad~VIvti  103 (373)
                      ..+.+.+.+.+.     +.|.+|++|+.|++++...+   .++.++...+   +  ...+|.|++|+
T Consensus        60 ~~~~~~l~~~l~-----~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~Ai  121 (122)
T d1h6va2          60 QDMANKIGEHME-----EHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV  121 (122)
T ss_dssp             HHHHHHHHHHHH-----HTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCC
T ss_pred             HHHHHHHHHHHH-----HCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEe
Confidence            446666666665     56899999999999987322   2355554332   2  35789999986

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=86.75  E-value=0.64  Score=38.99  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             cHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCCcccc
Q psy7654          43 GYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVSLGVF  108 (373)
Q Consensus        43 G~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP~~~l  108 (373)
                      ....+...+......       ..++++++|++|.. .+++|.|++++|.++++|.+|.|......
T Consensus        96 ~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~-~~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          96 SYDSIYGGLYELFGP-------ERYHTSKCLVGLSQ-DSETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             EHHHHHHHHHHHHCS-------TTEETTCCEEEEEE-CSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             hhHHHHHHHHHhccc-------ceeecCcEEEEEEe-eCCceEEEECCCCEEEEEEEecccccccc
Confidence            445555555544432       68999999999999 88899999999999999999999876543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.62  E-value=0.2  Score=38.27  Aligned_cols=49  Identities=16%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEcCC
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGVLVTCADGSQYSADKVLITVS  104 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v~v~~~~G~~~~ad~VIvtiP  104 (373)
                      ..+.+.+.+.+.     ++|.++++|+.|+++..   +++  . .+++.+++|.||+|+-
T Consensus        72 ~~~~~~~~~~l~-----~~GV~~~~~~~v~~~~~---~~v--~-~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          72 EELSNMIKDMLE-----ETGVKFFLNSELLEANE---EGV--L-TNSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHHH-----HTTEEEECSCCEEEECS---SEE--E-ETTEEEECSCEEEECC
T ss_pred             HHHHHHHHHHHH-----HCCcEEEeCCEEEEEeC---CEE--E-eCCCEEECCEEEEEEE
Confidence            345555555555     56799999999999864   332  2 3566899999999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.14  E-value=0.52  Score=41.53  Aligned_cols=59  Identities=25%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCc---EEEEeCCCc--EEEcCEEEEcCCc
Q psy7654          42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANG---VLVTCADGS--QYSADKVLITVSL  105 (373)
Q Consensus        42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~---v~v~~~~G~--~~~ad~VIvtiP~  105 (373)
                      +....+.+.|.+.+.     ++|++|+++++|++|..+.+++   |.+...++.  .+.|+.||+|+--
T Consensus       149 ~~~~~~~~~l~~~a~-----~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG  212 (322)
T d1d4ca2         149 GVGAHVAQVLWDNAV-----KRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGG  212 (322)
T ss_dssp             CSHHHHHHHHHHHHH-----HTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             chhHHHHHHHHHHHH-----hcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCC
Confidence            445678888887776     5689999999999998833444   344444432  4789999999763

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.87  E-value=0.56  Score=40.83  Aligned_cols=59  Identities=20%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             CcHHHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCC--cEEEcCEEEEcCCc
Q psy7654          42 GGYGNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADG--SQYSADKVLITVSL  105 (373)
Q Consensus        42 gG~~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G--~~~~ad~VIvtiP~  105 (373)
                      +....+++.+.+.+.     +.|++|+++++|++|..+++++|   .+...++  .++.|+.||+|+--
T Consensus       142 ~~~~~~~~~l~~~a~-----~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         142 GVGAHVVQVLYDNAV-----KRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             CHHHHHHHHHHHHHH-----HTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             chHHHHHHHHHHHHH-----hccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCc
Confidence            345668888877765     56799999999999988333444   3333333  25789999999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.84  E-value=0.16  Score=44.95  Aligned_cols=39  Identities=31%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             CceEEEeccccCCC----Ccc-hhhHHHHHHHHHHHHHHhhCCC
Q psy7654         334 KQVLLFAGEASNEH----QYG-TVNGAVETGWREADRILKSDPA  372 (373)
Q Consensus       334 ~~~i~fAGd~~s~~----~~g-~veGA~~SG~~AA~~i~~~~~~  372 (373)
                      .|+||++||.....    ..| ++.+++.||++||+.|++.|.+
T Consensus       268 ~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~~  311 (311)
T d2gjca1         268 VDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA  311 (311)
T ss_dssp             STTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35899999976421    123 6777899999999999998754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.80  E-value=0.84  Score=40.09  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCceEEcCCceEEEEecCCCcE---EEEeCCCc--EEEcCEEEEcCCcc
Q psy7654          45 GNVLKLLLKQMPGQTPIDLGKKLLLNKEVTKINWEDANGV---LVTCADGS--QYSADKVLITVSLG  106 (373)
Q Consensus        45 ~~L~~~L~~~l~~~~~~~~G~~I~ln~~V~~I~~~~~~~v---~v~~~~G~--~~~ad~VIvtiP~~  106 (373)
                      ..|+++|.+.+.     +.|++|+++++|+++...++++|   .+...+++  .+.++.||+|+--.
T Consensus       148 ~~i~~~L~~~~~-----~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  209 (317)
T d1qo8a2         148 PEIIDTLRKAAK-----EQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY  209 (317)
T ss_dssp             HHHHHHHHHHHH-----HTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             hhhhHHHHHHhh-----hccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccc
Confidence            458888887776     66899999999999977344454   34444553  46799999998753