Psyllid ID: psy7662

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
MEDDQFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFVTNA
ccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccHHHcccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
cccccccccccEEEEEEcccccHccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEHHHHEccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
meddqfksnknvcvfsfqfeeeeqdtpvnlpsgrkrmFSKELRCMMygfgddrnpytesvDILEDAVIDFLVDMTQKAmemgrtgptfLSLLkfksnknvcvfsfqfeeeeqdtpvnlpsgrkrmFSKELRCMMygfgddrnpytesvDILEDAVIDFLVDMTQKAMEmgrtgrvqVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFVTNA
meddqfksnknVCVFsfqfeeeeqdtpvnlpsgrkrmFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQfeeeeqdtpvnlpsgrkrmFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMemgrtgrvqvedivflvrkdnrkyarvkdlltmneelkkarkafdevkfvtna
MEDDQFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFVTNA
***********VCVFSFQF******************FSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQF******************FSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMN*******************
*****************************************LRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQK**************LKFKS********************************ELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQK*M******RVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFD****V***
********NKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFVTNA
****QFKSNKNVCVFSFQFEEE***********RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFE********NL***RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFVT**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEDDQFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGPTFLSLLKFKSNKNVCVFSFQFEEEEQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFVTNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query220 2.2.26 [Sep-21-2011]
Q5R9W6124 Transcription initiation yes N/A 0.431 0.766 0.810 5e-40
P61216124 Transcription initiation yes N/A 0.431 0.766 0.810 5e-40
Q15543124 Transcription initiation yes N/A 0.431 0.766 0.810 5e-40
Q148M7124 Transcription initiation yes N/A 0.431 0.766 0.810 5e-40
Q54CN8106 Transcription initiation yes N/A 0.431 0.896 0.604 7e-26
O60076111 Transcription initiation yes N/A 0.409 0.810 0.362 2e-12
O75486 399 Transcription initiation no N/A 0.427 0.235 0.360 7e-09
P11747167 Transcription initiation yes N/A 0.409 0.538 0.290 4e-07
O14311 307 SAGA complex subunit spt3 no N/A 0.409 0.293 0.311 2e-05
>sp|Q5R9W6|TAF13_PONAB Transcription initiation factor TFIID subunit 13 OS=Pongo abelii GN=TAF13 PE=2 SV=1 Back     alignment and function desciption
 Score =  164 bits (414), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 87/95 (91%)

Query: 122 RKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIV 181
           RKR+FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +GR GRVQVEDIV
Sbjct: 28  RKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIV 87

Query: 182 FLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKF 216
           FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE  +
Sbjct: 88  FLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
TFIID beta-specific TAFII.
Pongo abelii (taxid: 9601)
>sp|P61216|TAF13_MOUSE Transcription initiation factor TFIID subunit 13 OS=Mus musculus GN=Taf13 PE=2 SV=1 Back     alignment and function description
>sp|Q15543|TAF13_HUMAN Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1 Back     alignment and function description
>sp|Q148M7|TAF13_BOVIN Transcription initiation factor TFIID subunit 13 OS=Bos taurus GN=TAF13 PE=2 SV=1 Back     alignment and function description
>sp|Q54CN8|TAF13_DICDI Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1 Back     alignment and function description
>sp|O60076|TAF13_SCHPO Transcription initiation factor TFIID subunit 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf13 PE=3 SV=3 Back     alignment and function description
>sp|O75486|SUPT3_HUMAN Transcription initiation protein SPT3 homolog OS=Homo sapiens GN=SUPT3H PE=1 SV=2 Back     alignment and function description
>sp|P11747|TAF13_YEAST Transcription initiation factor TFIID subunit 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF13 PE=1 SV=2 Back     alignment and function description
>sp|O14311|SPT3_SCHPO SAGA complex subunit spt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
332019240127 Transcription initiation factor TFIID su 0.509 0.881 0.798 1e-46
307171011127 Transcription initiation factor TFIID su 0.509 0.881 0.798 3e-46
380014199123 PREDICTED: transcription initiation fact 0.509 0.910 0.798 4e-46
345495731123 PREDICTED: transcription initiation fact 0.509 0.910 0.789 6e-46
307195168126 Transcription initiation factor TFIID su 0.509 0.888 0.787 2e-45
114052310129 TBP-associated factor 13 isoform 2 [Bomb 0.509 0.868 0.785 6e-44
242024683130 transcription initiation factor TFIID su 0.509 0.861 0.760 7e-44
312380735135 hypothetical protein AND_26003 [Anophele 0.509 0.829 0.741 8e-44
91077382127 PREDICTED: similar to TATA box binding p 0.518 0.897 0.793 1e-43
115345324126 TBP-associated factor 13 isoform 1 [Bomb 0.509 0.888 0.776 7e-43
>gi|332019240|gb|EGI59749.1| Transcription initiation factor TFIID subunit 13 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 104/114 (91%), Gaps = 2/114 (1%)

Query: 106 QFEEEEQDTPVN--LPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
           QFE+EE + P+   LP GRKR+FSKELRCMMYGFGDD+NPYTESVD+LED VI+F+ +MT
Sbjct: 9   QFEDEEAEIPIGGTLPGGRKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEFITEMT 68

Query: 164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFV 217
            +AME+GRTGRVQVEDIVFLVRKD+RKYARVKDLLTMNEELKKARKAFDEVK+ 
Sbjct: 69  HRAMEIGRTGRVQVEDIVFLVRKDSRKYARVKDLLTMNEELKKARKAFDEVKYA 122

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307171011|gb|EFN63074.1| Transcription initiation factor TFIID subunit 13 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380014199|ref|XP_003691127.1| PREDICTED: transcription initiation factor TFIID subunit 13-like [Apis florea] Back     alignment and taxonomy information
>gi|345495731|ref|XP_001606443.2| PREDICTED: transcription initiation factor TFIID subunit 13-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307195168|gb|EFN77161.1| Transcription initiation factor TFIID subunit 13 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|114052310|ref|NP_001040516.1| TBP-associated factor 13 isoform 2 [Bombyx mori] gi|95102664|gb|ABF51270.1| transcription initiation factor TFIID 18 kDa subunit isoform 2 [Bombyx mori] Back     alignment and taxonomy information
>gi|242024683|ref|XP_002432756.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis] gi|212518241|gb|EEB20018.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|312380735|gb|EFR26651.1| hypothetical protein AND_26003 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|91077382|ref|XP_975241.1| PREDICTED: similar to TATA box binding protein (TBP)-associated factor, putative [Tribolium castaneum] gi|270002114|gb|EEZ98561.1| hypothetical protein TcasGA2_TC001068 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|115345324|ref|NP_001041704.1| TBP-associated factor 13 isoform 1 [Bombyx mori] gi|95102662|gb|ABF51269.1| transcription initiation factor TFIID 18 kDa subunit isoform 1 [Bombyx mori] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
FB|FBgn0032847136 Taf13 "TBP-associated factor 1 0.513 0.830 0.736 6.6e-42
UNIPROTKB|Q5ZLI0124 TAF13 "Uncharacterized protein 0.5 0.887 0.725 1.1e-39
UNIPROTKB|Q148M7124 TAF13 "Transcription initiatio 0.5 0.887 0.725 2.3e-39
UNIPROTKB|E2QZK3124 TAF13 "Uncharacterized protein 0.5 0.887 0.725 2.3e-39
UNIPROTKB|Q15543124 TAF13 "Transcription initiatio 0.5 0.887 0.725 2.3e-39
UNIPROTKB|F1S5Y9124 LOC100624071 "Uncharacterized 0.5 0.887 0.725 2.3e-39
MGI|MGI:1913500124 Taf13 "TAF13 RNA polymerase II 0.5 0.887 0.725 2.3e-39
RGD|1305398124 Taf13 "TAF13 RNA polymerase II 0.5 0.887 0.725 2.3e-39
ZFIN|ZDB-GENE-030131-2873124 taf13 "TAF13 RNA polymerase II 0.5 0.887 0.716 2.1e-38
DICTYBASE|DDB_G0292838106 taf13 "TFIID subunit" [Dictyos 0.418 0.867 0.634 3.2e-26
FB|FBgn0032847 Taf13 "TBP-associated factor 13" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 84/114 (73%), Positives = 101/114 (88%)

Query:   105 FQFEEE-EQDTPVNLPSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMT 163
             F F+++ E D  V   SGRKR+FSKELRCMM+GFGDD+NPYTE+VD+LED VI+++ + T
Sbjct:    16 FNFDDDAEDDQFVATNSGRKRLFSKELRCMMFGFGDDKNPYTETVDLLEDLVIEYIAETT 75

Query:   164 QKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLLTMNEELKKARKAFDEVKFV 217
              +AME+GRTGRVQVEDI+FLVRKD RKYARVKDLLTMNEELKKARKAFDE+K+V
Sbjct:    76 HRAMEIGRTGRVQVEDIIFLVRKDPRKYARVKDLLTMNEELKKARKAFDEIKYV 129
GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS
GO:0005669 "transcription factor TFIID complex" evidence=ISS
GO:0001075 "RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly" evidence=ISS
GO:0046982 "protein heterodimerization activity" evidence=IEA
UNIPROTKB|Q5ZLI0 TAF13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q148M7 TAF13 "Transcription initiation factor TFIID subunit 13" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZK3 TAF13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15543 TAF13 "Transcription initiation factor TFIID subunit 13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5Y9 LOC100624071 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913500 Taf13 "TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305398 Taf13 "TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2873 taf13 "TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292838 taf13 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q148M7TAF13_BOVINNo assigned EC number0.81050.43180.7661yesN/A
Q15543TAF13_HUMANNo assigned EC number0.81050.43180.7661yesN/A
Q54CN8TAF13_DICDINo assigned EC number0.60410.43180.8962yesN/A
P61216TAF13_MOUSENo assigned EC number0.81050.43180.7661yesN/A
Q5R9W6TAF13_PONABNo assigned EC number0.81050.43180.7661yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
cd0797892 cd07978, TAF13, The TATA Binding Protein (TBP) Ass 4e-38
pfam0226993 pfam02269, TFIID-18kDa, Transcription initiation f 2e-35
COG5248126 COG5248, TAF19, Transcription initiation factor TF 4e-19
cd0797892 cd07978, TAF13, The TATA Binding Protein (TBP) Ass 8e-17
pfam0226993 pfam02269, TFIID-18kDa, Transcription initiation f 2e-15
COG5248126 COG5248, TAF19, Transcription initiation factor TF 2e-06
>gnl|CDD|173962 cd07978, TAF13, The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information 
 Score =  127 bits (321), Expect = 4e-38
 Identities = 52/92 (56%), Positives = 77/92 (83%), Gaps = 2/92 (2%)

Query: 123 KRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMG--RTGRVQVEDI 180
           KR+F+KE+R MMYGFGD +NP  E+VD+LED V+++++++  KA E+   R G+V+VED+
Sbjct: 1   KRLFTKEIRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQRRRGKVKVEDL 60

Query: 181 VFLVRKDNRKYARVKDLLTMNEELKKARKAFD 212
           +FL+RKD +K AR+++LL+M +ELKKARKAFD
Sbjct: 61  IFLLRKDPKKLARLRELLSMKDELKKARKAFD 92

The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. Each TAF, with the help of a specific activator, is required only for expression of subset of genes and is not universally involved for transcription as are GTFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs; the HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. The minimal HFD contains three alpha-helices linked by two loops and are found in core histones, TAFs and many other transcription factors. TFIID has a histone octamer-like substructure. TAF13 interacts with TAF11 and makes a histone-like heterodimer similar to H3/H4-like proteins. The dimer may be structurally and functionally similar to the spt3 protein within the SAGA histone acetyltransferase complex. Length = 92
>gnl|CDD|190265 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 18kD subunit Back     alignment and domain information
>gnl|CDD|227573 COG5248, TAF19, Transcription initiation factor TFIID, subunit TAF13 [Transcription] Back     alignment and domain information
>gnl|CDD|173962 cd07978, TAF13, The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>gnl|CDD|190265 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 18kD subunit Back     alignment and domain information
>gnl|CDD|227573 COG5248, TAF19, Transcription initiation factor TFIID, subunit TAF13 [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 220
KOG3901|consensus109 100.0
cd0797892 TAF13 The TATA Binding Protein (TBP) Associated Fa 100.0
PF0226993 TFIID-18kDa: Transcription initiation factor IID, 100.0
COG5248126 TAF19 Transcription initiation factor TFIID, subun 99.94
KOG3901|consensus109 99.91
cd0797892 TAF13 The TATA Binding Protein (TBP) Associated Fa 99.85
PF0226993 TFIID-18kDa: Transcription initiation factor IID, 99.84
COG5248126 TAF19 Transcription initiation factor TFIID, subun 99.77
KOG3902|consensus 352 99.75
KOG3902|consensus 352 99.18
smart0057677 BTP Bromodomain transcription factors and PHD doma 94.93
PF0384768 TFIID_20kDa: Transcription initiation factor TFIID 94.18
PF0080865 CBFD_NFYB_HMF: Histone-like transcription factor ( 93.97
cd0798172 TAF12 TATA Binding Protein (TBP) Associated Factor 93.92
smart0080365 TAF TATA box binding protein associated factor. TA 93.35
PF0752477 Bromo_TP: Bromodomain associated; InterPro: IPR006 93.29
PF1563076 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 92.08
PLN00035103 histone H4; Provisional 91.71
smart0057677 BTP Bromodomain transcription factors and PHD doma 91.5
cd0007685 H4 Histone H4, one of the four histones, along wit 89.5
PTZ00015102 histone H4; Provisional 88.6
PF0752477 Bromo_TP: Bromodomain associated; InterPro: IPR006 88.23
PF0384768 TFIID_20kDa: Transcription initiation factor TFIID 87.77
PF0012575 Histone: Core histone H2A/H2B/H3/H4 histone h2a si 87.44
PF0296966 TAF: TATA box binding protein associated factor (T 87.04
cd0798172 TAF12 TATA Binding Protein (TBP) Associated Factor 85.82
KOG0869|consensus168 84.91
KOG1142|consensus258 84.07
cd07979117 TAF9 TATA Binding Protein (TBP) Associated Factor 82.25
>KOG3901|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.7e-37  Score=241.00  Aligned_cols=100  Identities=61%  Similarity=1.049  Sum_probs=96.7

Q ss_pred             CCCcccccHHHHHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHhhhccChhHHHHHHHHH
Q psy7662         119 PSGRKRMFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEMGRTGRVQVEDIVFLVRKDNRKYARVKDLL  198 (220)
Q Consensus       119 ~~~rk~~f~kEI~~MMygfGD~~~P~~ETv~l~EdIV~e~I~~l~~~A~~~arrgki~~eDl~FllRkD~~Kl~Rv~~lL  198 (220)
                      +..|+++|++||++|||||||+++|+++||+++|+||++||.++|+.|+.+++||++++|||+|+||+||+|++|+++||
T Consensus         4 ~~~rk~lF~Kdl~~mmYgfGDd~nP~~~tv~~Le~iV~~Yi~elt~~a~~~g~rgk~~veD~~f~lRkDpkK~~Rv~eLL   83 (109)
T KOG3901|consen    4 PEQRKHLFSKDLRSMMYGFGDDVNPYPETVDLLEDIVLEYITELTHAAMEIGKRGKVKVEDFKFLLRKDPKKLGRVKELL   83 (109)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHhcccCceeHHHHHHHHHhChHHHhHHHHHH
Confidence            34489999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccccccc
Q psy7662         199 TMNEELKKARKAFDEVKFVT  218 (220)
Q Consensus       199 ~~k~~ik~Ark~fd~~~~~~  218 (220)
                      .|+++||+|||+||+.+|..
T Consensus        84 ~mneelk~ArKaF~~~~y~~  103 (109)
T KOG3901|consen   84 AMNEELKKARKAFDETDYEL  103 (109)
T ss_pred             HhHHHHHHHHhccchHhHHh
Confidence            99999999999999999864

>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18) Back     alignment and domain information
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription] Back     alignment and domain information
>KOG3901|consensus Back     alignment and domain information
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18) Back     alignment and domain information
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription] Back     alignment and domain information
>KOG3902|consensus Back     alignment and domain information
>KOG3902|consensus Back     alignment and domain information
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins Back     alignment and domain information
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin Back     alignment and domain information
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>smart00803 TAF TATA box binding protein associated factor Back     alignment and domain information
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO) Back     alignment and domain information
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C Back     alignment and domain information
>PLN00035 histone H4; Provisional Back     alignment and domain information
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins Back     alignment and domain information
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution Back     alignment and domain information
>PTZ00015 histone H4; Provisional Back     alignment and domain information
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO) Back     alignment and domain information
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] Back     alignment and domain information
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex Back     alignment and domain information
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG0869|consensus Back     alignment and domain information
>KOG1142|consensus Back     alignment and domain information
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
1bh8_A45 Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE Leng 5e-16
1bh8_A45 Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE Leng 5e-16
>pdb|1BH8|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE Length = 45 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 41/45 (91%)
Query: 37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81
          +FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +
Sbjct: 1  LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45
>pdb|1BH8|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE Length = 45 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
1bh9_A45 TAFII18; histone fold, tata binding protein, trans 2e-17
1bh9_A45 TAFII18; histone fold, tata binding protein, trans 2e-17
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A* Length = 45 Back     alignment and structure
 Score = 72.0 bits (177), Expect = 2e-17
 Identities = 35/45 (77%), Positives = 41/45 (91%)

Query: 37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81
          +FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +
Sbjct: 1  LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A* Length = 45 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
1bh9_A45 TAFII18; histone fold, tata binding protein, trans 99.84
1bh9_A45 TAFII18; histone fold, tata binding protein, trans 99.79
3b0b_B107 CENP-S, centromere protein S; histone fold, DNA bi 97.51
1f1e_A154 Histone fold protein; archaeal histone protein, DN 96.07
3b0c_T111 CENP-T, centromere protein T; histone fold, DNA bi 95.72
1id3_B102 Histone H4; nucleosome core particle, chromatin, p 95.05
2hue_C84 Histone H4; mini beta sheet, elongated beta sandwh 95.01
2yfw_B103 Histone H4, H4; cell cycle, kinetochore, centromer 94.8
1tzy_D103 Histone H4-VI; histone-fold, tetramer-dimer-dimer, 94.74
4dra_A113 Centromere protein S; DNA binding complex, DNA dam 94.65
3v9r_A90 MHF1, uncharacterized protein YOL086W-A; histone f 94.52
1ku5_A70 HPHA, archaeal histon; histone fold, DNA binding p 94.06
3vh5_A140 CENP-S; histone fold, chromosome segregation, DNA 93.89
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 93.38
1jfi_B179 DR1 protein, transcription regulator NC2 beta chai 93.26
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 93.03
2ly8_A121 Budding yeast chaperone SCM3; centromere protein, 93.02
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 92.94
1b67_A68 Protein (histone HMFA); DNA binding protein; 1.48A 92.59
3b0c_W76 CENP-W, centromere protein W; histone fold, DNA bi 92.45
4g92_C119 HAPE; transcription factor, nucleosome, minor groo 89.46
1taf_B70 TFIID TBP associated factor 62; transcription init 89.03
1h3o_B76 Transcription initiation factor TFIID 20/15 kDa su 88.97
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 87.68
3b0b_B107 CENP-S, centromere protein S; histone fold, DNA bi 86.85
1taf_A68 TFIID TBP associated factor 42; transcription init 84.88
1h3o_B76 Transcription initiation factor TFIID 20/15 kDa su 82.24
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A* Back     alignment and structure
Probab=99.84  E-value=2.3e-21  Score=130.56  Aligned_cols=45  Identities=78%  Similarity=1.334  Sum_probs=43.5

Q ss_pred             cchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy7662          37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM   81 (220)
Q Consensus        37 ~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~   81 (220)
                      +|+|||++|||||||+++|+||||++|||||++||+++|++|+++
T Consensus         1 lF~~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v   45 (45)
T 1bh9_A            1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI   45 (45)
T ss_dssp             CCHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999999999999999874
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A* Back     alignment and structure
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T Back     alignment and structure
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B Back     alignment and structure
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} Back     alignment and structure
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... Back     alignment and structure
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A Back     alignment and structure
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Back     alignment and structure
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Back     alignment and structure
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Back     alignment and structure
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W Back     alignment and structure
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* Back     alignment and structure
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} Back     alignment and structure
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 220
d1bh9a_45 a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [Tax 2e-17
d1bh9a_45 a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [Tax 2e-17
>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 Back     information, alignment and structure

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (174), Expect = 2e-17
 Identities = 35/45 (77%), Positives = 41/45 (91%)

Query: 37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM 81
          +FSKELRCMMYGFGDD+NPYTESVDILED VI+F+ +MT KAM +
Sbjct: 1  LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45
>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
d1bh9a_45 TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]} 99.86
d1bh9a_45 TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 96.36
d1htaa_68 Archaeal histone {Archaeon Methanothermus fervidus 95.92
d2huec182 Histone H4 {African clawed frog (Xenopus laevis) [ 95.2
d1ku5a_66 Archaeal histone {Archaeon (Pyrococcus horikoshii) 95.18
d1n1jb_78 Nuclear transcription factor Y subunit gamma (Nf-Y 94.89
d1jfib_135 Negative cofactor 2, NC2, beta chain {Human (Homo 91.92
d2bykb189 Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax 90.69
d1jfia_66 Negative cofactor 2, NC2, alpha chain {Human (Homo 88.77
d1h3ob_74 TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom 88.42
d1n1ja_87 Nuclear transcription factor Y subunit beta (Nf-Yb 88.41
d1htaa_68 Archaeal histone {Archaeon Methanothermus fervidus 81.1
d2huec182 Histone H4 {African clawed frog (Xenopus laevis) [ 80.21
>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=134.88  Aligned_cols=45  Identities=78%  Similarity=1.334  Sum_probs=43.7

Q ss_pred             cchHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy7662          37 MFSKELRCMMYGFGDDRNPYTESVDILEDAVIDFLVDMTQKAMEM   81 (220)
Q Consensus        37 ~f~kel~~mmygfGD~~~P~~eTv~llEeIv~~yI~~l~~~A~~~   81 (220)
                      +|+|||++|||||||+++|+||||++|||||++||++|||+|+++
T Consensus         1 lF~~ei~~mMy~~GD~~~P~~ETv~llEdiv~~~i~~~~~~A~~v   45 (45)
T d1bh9a_           1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI   45 (45)
T ss_dssp             CCHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999999999999999974
>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Back     information, alignment and structure
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Back     information, alignment and structure
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Back     information, alignment and structure
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure