Psyllid ID: psy7674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MVDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK
Secondary Structure (PSIPRED)
cccEEEccccccEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccEEEEccEEEEEEccEEEEcccccccccccccccEEEcccccccccccccEEEEEcccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEccEEEEEEEEEEEEcccEEEcccccccHHHcEEHHHHHHccccccEEEEEcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvdiqtappdynfqvveldklpngaQIQTALFertgqktvpnifihgkhidnnsvvifskswcpfctkAKENNYEKELEKnkidyfnakavfvdkhrvkfageertVSAQNFIIAvggrptypdipgahlgitsddlfslnkdpgkvLLVGASYIALECAGCDK
Flexible Loop (DISEMBL)
mvdiqtappdynFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVkfageertvsaQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK
Low Complexity Region (SEG)
MVDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAkennyekeleknkIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK
Disordered region (IsUnstruct)
**********YNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC**
Disordered Region (DISOPRED)
******APPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK
Disordered Region (DISEMBL)
MVDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK
Disordered Region (DISPRO)
MVDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
P91938	596	Thioredoxin reductase 1,	yes	N/A	0.518	0.142	0.602	4e-24
P30635	503	Probable glutathione redu	yes	N/A	0.573	0.186	0.524	3e-22
Q9VNT5	516	Thioredoxin reductase 2,	no	N/A	0.512	0.162	0.494	7e-21
B9A1H3	495	Thioredoxin reductase SEP	N/A	N/A	0.542	0.179	0.516	7e-21
Q9N2I8	511	Thioredoxin reductase 2,	yes	N/A	0.518	0.166	0.577	8e-21
Q9NNW7	524	Thioredoxin reductase 2,	yes	N/A	0.518	0.162	0.566	1e-19
Q9JLT4	524	Thioredoxin reductase 2,	yes	N/A	0.518	0.162	0.533	2e-19
Q9Z0J5	526	Thioredoxin reductase 2,	yes	N/A	0.542	0.169	0.510	3e-18
Q9MYY8	499	Thioredoxin reductase 1,	no	N/A	0.536	0.176	0.521	4e-17
O62768	499	Thioredoxin reductase 1,	no	N/A	0.542	0.178	0.516	5e-17

>sp|P91938|TRXR1_DROME Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 222 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 281

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 282 SDDLFSLDREPGKTLVVGAGYIGLECAG 309

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|P30635|GSHR_CAEEL Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=3 SV=2

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 68/101 (67%), Gaps = 7/101 (6%)

Query: 68  KAKENN--YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERT-----VSAQNFIIAVGGRP 120
           + K NN  Y  +L + KI+YFNA A FVDK ++   G ++      +SA N +I+ G RP
Sbjct: 118 RVKANNWIYRVQLNQKKINYFNAYAEFVDKDKIVITGTDKNKTKNFLSAPNVVISTGLRP 177

Query: 121 TYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            YP+IPGA LGITSDDLF+L   PGK L+VG  Y+ALECAG
Sbjct: 178 KYPNIPGAELGITSDDLFTLASVPGKTLIVGGGYVALECAG 218

Maintains high levels of reduced glutathione in the cytosol.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9VNT5|TRXR2_DROME Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 5/89 (5%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRVKF----AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLG 131
           +L   K++Y N+ A F D H +++      E R V+++  ++AVGGRP YPDIPGA  LG
Sbjct: 140 DLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELG 199

Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALECA 160
           ITSDD+FS  ++PG+ L+VGA Y+ LECA
Sbjct: 200 ITSDDIFSYEREPGRTLVVGAGYVGLECA 228

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|B9A1H3|TRXR1_EMIHU Thioredoxin reductase SEP1 OS=Emiliania huxleyi GN=SEP1 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 62/93 (66%), Gaps = 4/93 (4%)

Query: 73  NYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA- 128
            Y  +L  N + Y+NA A F+D H V+     G+   ++A   +I  GGRP YPDIPGA 
Sbjct: 109 GYRSDLMSNGVKYYNAYATFLDPHTVEAVDKKGKVTKITASEIVICTGGRPRYPDIPGAK 168

Query: 129 HLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            LGITSDD+F+L   PG+ L+VGASY+ALECAG
Sbjct: 169 ELGITSDDVFALKSPPGRTLVVGASYVALECAG 201

Emiliania huxleyi (taxid: 2903)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9N2I8|TRXR2_BOVIN Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 5/90 (5%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPD-IPGA-HLG 131
           +L+  K+ YFN KA FVD H V      GEE  +SA++ +IA GGRP YP  I GA   G
Sbjct: 133 QLQDRKVKYFNVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYG 192

Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           ITSDDLF L + PGK L+VGASY+ALECAG
Sbjct: 193 ITSDDLFWLKESPGKTLVVGASYVALECAG 222

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 5/90 (5%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPD-IPGA-HLG 131
           +L+  K+ YFN KA FVD+H V      G+E  +SA + IIA GGRP YP  I GA   G
Sbjct: 146 QLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYG 205

Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           ITSDD+F L + PGK L+VGASY+ALECAG
Sbjct: 206 ITSDDIFWLKESPGKTLVVGASYVALECAG 235

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 63/90 (70%), Gaps = 5/90 (5%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRVK---FAGEERTVSAQNFIIAVGGRPTYP-DIPGA-HLG 131
           +L+  K+ YFN KA FVD+H V+     G+   +SA++ +IA GGRP YP  + GA   G
Sbjct: 146 QLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG 205

Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           ITSDD+F L + PGK L+VGASY+ALECAG
Sbjct: 206 ITSDDIFWLKESPGKTLVVGASYVALECAG 235

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 5/94 (5%)

Query: 73  NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP-DIPGA 128
            +  +L+  K+ YFN KA FV++H V     AG+   +SA++ +IA GGRP YP  + GA
Sbjct: 144 GHRVQLQDRKVKYFNIKASFVNEHTVHGVDKAGKVTQLSAKHIVIATGGRPKYPTQVKGA 203

Query: 129 -HLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
              GITSDD+F L + PGK L+VGASY+ALECAG
Sbjct: 204 LEHGITSDDIFWLKESPGKTLVVGASYVALECAG 237

Maintains mitochondrial thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9MYY8|TRXR1_PIG Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AH 129
           Y   L + K+ Y NA   FV  HR+K     G+E+  SA+ F+IA G RP Y  IPG   
Sbjct: 116 YRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGERPRYLGIPGDKE 175

Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
             I+SDDLFSL   PGK L+VGASY+ALECAG
Sbjct: 176 YCISSDDLFSLPYCPGKTLVVGASYVALECAG 207

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3

 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 73  NYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-A 128
            Y   L + K+ Y NA   FV  HR+K     G+E+  SA+ F+IA G RP Y  IPG  
Sbjct: 115 GYRVALREKKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDK 174

Query: 129 HLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
              I+SDDLFSL   PGK L+VGASY+ALECAG
Sbjct: 175 EYCISSDDLFSLPYCPGKTLVVGASYVALECAG 207

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
326436016	495	thioredoxin reductase 1 [Salpingoeca sp.	0.542	0.179	0.554	4e-23
15291597	470	GM14215p [Drosophila melanogaster]	0.518	0.180	0.602	1e-22
195131915	601	GI15898 [Drosophila mojavensis] gi|19390	0.518	0.141	0.602	2e-22
24640551	596	thioredoxin reductase-1, isoform B [Dros	0.518	0.142	0.602	2e-22
194893675	491	GG19308 [Drosophila erecta] gi|190649568	0.518	0.173	0.602	2e-22
10953881	491	thioredoxin reductase-1 splice variant [	0.518	0.173	0.602	2e-22
24640553	508	thioredoxin reductase-1, isoform C [Dros	0.518	0.167	0.602	2e-22
146386953	488	Chain X, Crystal Structure Of Thioredoxi	0.518	0.174	0.602	2e-22
240104320	483	Chain A, Crystal Structure Of Drosophila	0.518	0.175	0.602	2e-22
240104332	482	Chain A, Crystal Structure Of Drosophila	0.518	0.176	0.602	2e-22

>gi|326436016|gb|EGD81586.1| thioredoxin reductase 1 [Salpingoeca sp. ATCC 50818]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 3/92 (3%)

Query: 73  NYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAH 129
            Y   L  N +DY NA+   VD H +K     GEE T++ +N ++A+GGRP YPDIPGA 
Sbjct: 119 GYRVSLRDNNVDYKNARGSLVDAHTLKLVNKRGEESTLTTKNVVLAMGGRPRYPDIPGAE 178

Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            GITSDDLF + ++PGK L+VGASY+ALECAG
Sbjct: 179 HGITSDDLFWMEREPGKTLVVGASYVALECAG 210

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|15291597|gb|AAK93067.1| GM14215p [Drosophila melanogaster]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 222 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 281

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 282 SDDLFSLDREPGKTLVVGAGYIGLECAG 309

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195131915|ref|XP_002010389.1| GI15898 [Drosophila mojavensis] gi|193908839|gb|EDW07706.1| GI15898 [Drosophila mojavensis]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K  G ERT++AQ F+IAVGGRP YP+IPGA   GIT
Sbjct: 227 DLRDKKVEYINGLGSFVDSHTISAKLKGGERTITAQTFVIAVGGRPRYPNIPGAVEYGIT 286

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+ +PGK L+VGA YI LECAG
Sbjct: 287 SDDLFSLDHEPGKTLVVGAGYIGLECAG 314

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24640551|ref|NP_727251.1| thioredoxin reductase-1, isoform B [Drosophila melanogaster] gi|27924001|sp|P91938.2|TRXR1_DROME RecName: Full=Thioredoxin reductase 1, mitochondrial; Short=TrxR-1; Flags: Precursor gi|22831936|gb|AAF46355.2| thioredoxin reductase-1, isoform B [Drosophila melanogaster]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 222 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 281

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 282 SDDLFSLDREPGKTLVVGAGYIGLECAG 309

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194893675|ref|XP_001977919.1| GG19308 [Drosophila erecta] gi|190649568|gb|EDV46846.1| GG19308 [Drosophila erecta]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 117 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 176

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAG 204

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|10953881|gb|AAG25640.1|AF301145_1 thioredoxin reductase-1 splice variant [Drosophila melanogaster]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 117 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 176

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAG 204

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24640553|ref|NP_727252.1| thioredoxin reductase-1, isoform C [Drosophila melanogaster] gi|22831937|gb|AAN09228.1| thioredoxin reductase-1, isoform C [Drosophila melanogaster] gi|92109834|gb|ABE73241.1| IP15366p [Drosophila melanogaster]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 134 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 193

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 194 SDDLFSLDREPGKTLVVGAGYIGLECAG 221

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|146386953|pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 117 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 176

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAG 204

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240104320|pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation gi|240104321|pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 117 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 176

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAG 204

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240104332|pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type gi|240104333|pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 77  ELEKNKIDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT 133
           +L   K++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GIT
Sbjct: 113 DLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT 172

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 173 SDDLFSLDREPGKTLVVGAGYIGLECAG 200

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
ZFIN|ZDB-GENE-030327-2	602	txnrd1 "thioredoxin reductase	0.481	0.131	0.518	2e-23
UNIPROTKB|E1C928	604	TXNRD3 "Uncharacterized protei	0.481	0.130	0.493	4e-22
FB|FBgn0020653	596	Trxr-1 "Thioredoxin reductase-	0.481	0.132	0.621	9.2e-22
UNIPROTKB|H0YBI6	644	TXNRD3 "Thioredoxin reductase	0.481	0.122	0.506	1e-21
UNIPROTKB|Q86VQ6	682	TXNRD3 "Thioredoxin reductase	0.481	0.115	0.506	1.2e-21
UNIPROTKB|H0YBQ0	698	TXNRD3 "Thioredoxin reductase	0.481	0.113	0.506	1.3e-21
UNIPROTKB|I3L752	550	TXNRD3 "Uncharacterized protei	0.481	0.143	0.493	2e-21
UNIPROTKB|F1MBL2	577	LOC100847285 "Uncharacterized	0.481	0.136	0.518	2.9e-21
UNIPROTKB|F1P8Z4	584	TXNRD3 "Uncharacterized protei	0.481	0.135	0.493	5.1e-21
UNIPROTKB|F1M0T6	695	Txnrd3 "Protein Txnrd3" [Rattu	0.481	0.113	0.481	5.7e-21

ZFIN|ZDB-GENE-030327-2 txnrd1 "thioredoxin reductase 1" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
 Identities = 43/83 (51%), Positives = 54/83 (65%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             ++Y NA A FV+ H++K     G+E   +A  F++A G RP Y  IPG     ITSDDLF
Sbjct:   228 VNYVNAYAEFVEPHKIKATNKRGKETFYTAAQFVLATGERPRYLGIPGDKEFCITSDDLF 287

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PGK L+VGASY+ALEC G
Sbjct:   288 SLPYCPGKTLVVGASYVALECGG 310

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|E1C928 TXNRD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
 Identities = 41/83 (49%), Positives = 53/83 (63%)

Query:    83 IDYFNAKAVFVDKHRVKFAGEERTVS---AQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H++K    +  V+   A+ F++A G RP Y  IPG     ITSDDLF
Sbjct:   232 VTYQNSYGEFVEPHKIKATNRKGQVTYHTAETFVLATGERPRYLGIPGDKEYCITSDDLF 291

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PGK L+VGASY+ALECAG
Sbjct:   292 SLPYCPGKTLVVGASYVALECAG 314

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

FB|FBgn0020653 Trxr-1 "Thioredoxin reductase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 9.2e-22, P = 9.2e-22
 Identities = 51/82 (62%), Positives = 61/82 (74%)

Query:    83 IDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS 139
             ++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GITSDDLFS
Sbjct:   228 VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFS 287

Query:   140 LNKDPGKVLLVGASYIALECAG 161
             L+++PGK L+VGA YI LECAG
Sbjct:   288 LDREPGKTLVVGAGYIGLECAG 309

GO:0001666 "response to hypoxia" evidence=IMP

GO:0004362 "glutathione-disulfide reductase activity" evidence=IDA;NAS;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA;IC

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=NAS;IDA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|H0YBI6 TXNRD3 "Thioredoxin reductase 3" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 42/83 (50%), Positives = 52/83 (62%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H++K     G+E   +A  F+IA G RP Y  I G     ITSDDLF
Sbjct:   306 VAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLF 365

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PGK L+VGASY+ALECAG
Sbjct:   366 SLPYCPGKTLVVGASYVALECAG 388

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|Q86VQ6 TXNRD3 "Thioredoxin reductase 3" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 42/83 (50%), Positives = 52/83 (62%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H++K     G+E   +A  F+IA G RP Y  I G     ITSDDLF
Sbjct:   308 VAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLF 367

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PGK L+VGASY+ALECAG
Sbjct:   368 SLPYCPGKTLVVGASYVALECAG 390

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=NAS

GO:0045454 "cell redox homeostasis" evidence=NAS

UNIPROTKB|H0YBQ0 TXNRD3 "Thioredoxin reductase 3" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 42/83 (50%), Positives = 52/83 (62%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H++K     G+E   +A  F+IA G RP Y  I G     ITSDDLF
Sbjct:   324 VAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLF 383

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PGK L+VGASY+ALECAG
Sbjct:   384 SLPYCPGKTLVVGASYVALECAG 406

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|I3L752 TXNRD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 41/83 (49%), Positives = 51/83 (61%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H++K     G+E   +A  F+IA G RP Y  I G     ITSDDLF
Sbjct:   274 VAYINSYGEFVEHHKIKATNGKGQETCYTAAKFVIATGERPRYLGIQGDKEYCITSDDLF 333

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PG  L+VGASY+ALECAG
Sbjct:   334 SLPYCPGTTLVVGASYVALECAG 356

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|F1MBL2 LOC100847285 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
 Identities = 43/83 (51%), Positives = 52/83 (62%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H+VK     G+E   +A  F+IA G RP Y  IPG     ITSDDLF
Sbjct:   205 VTYVNSFGEFVEHHKVKATNEKGQEVLYTAAKFVIATGERPRYLGIPGDREYCITSDDLF 264

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PG  L+VGASY+ALECAG
Sbjct:   265 SLPYCPGATLVVGASYVALECAG 287

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|F1P8Z4 TXNRD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 185 (70.2 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
 Identities = 41/83 (49%), Positives = 52/83 (62%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H++K     G+E   +A  F++A G RP Y  I G     ITSDDLF
Sbjct:   212 VAYVNSYGEFVEHHKIKATNRKGQETCYTAAKFVLATGQRPRYLGIQGDKEYCITSDDLF 271

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PGK L+VGASY+ALECAG
Sbjct:   272 SLPYCPGKTLVVGASYVALECAG 294

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|F1M0T6 Txnrd3 "Protein Txnrd3" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
 Identities = 40/83 (48%), Positives = 50/83 (60%)

Query:    83 IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLF 138
             + Y N+   FV+ H++K     G+E   +A  F+IA G RP Y  I G     ITSDDLF
Sbjct:   323 VTYVNSFGEFVELHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDDLF 382

Query:   139 SLNKDPGKVLLVGASYIALECAG 161
             SL   PG  L+VGASY+ LECAG
Sbjct:   383 SLPYCPGNTLIVGASYVGLECAG 405

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NNW7	TRXR2_HUMAN	1, ., 8, ., 1, ., 9	0.5666	0.5182	0.1622	yes	N/A
Q9Z0J5	TRXR2_RAT	1, ., 8, ., 1, ., 9	0.5106	0.5426	0.1692	yes	N/A
P30635	GSHR_CAEEL	1, ., 8, ., 1, ., 7	0.5247	0.5731	0.1868	yes	N/A
P91938	TRXR1_DROME	1, ., 8, ., 1, ., 9	0.6022	0.5182	0.1426	yes	N/A
Q9N2I8	TRXR2_BOVIN	1, ., 8, ., 1, ., 9	0.5777	0.5182	0.1663	yes	N/A
Q9JLT4	TRXR2_MOUSE	1, ., 8, ., 1, ., 9	0.5333	0.5182	0.1622	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	4e-32
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	2e-29
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	1e-25
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	1e-20
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-20
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	3e-19
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	1e-17
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-17
TIGR02053	463	TIGR02053, MerA, mercuric reductase	1e-17
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-15
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	5e-15
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	6e-15
PLN02546	558	PLN02546, PLN02546, glutathione reductase	4e-14
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	1e-12
PLN02507	499	PLN02507, PLN02507, glutathione reductase	1e-12
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	4e-12
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	1e-10
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-10
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	1e-09
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	3e-09
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	9e-09
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	3e-08
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	1e-07
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	2e-07
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	2e-07
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	2e-07
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	3e-07
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	3e-07
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	3e-07
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	4e-07
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	1e-06
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	2e-06
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	3e-06
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	1e-05
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	4e-05
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	4e-05
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	8e-05
cd03029	72	cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family	8e-05
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	9e-05
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	1e-04
TIGR02189	99	TIGR02189, GlrX-like_plant, Glutaredoxin-like fami	2e-04
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	3e-04
cd02976	73	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is	3e-04
TIGR02190	79	TIGR02190, GlrX-dom, Glutaredoxin-family domain	4e-04
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	0.001
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	0.001

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score =  119 bits (299), Expect = 4e-32
 Identities = 55/92 (59%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA-H 129
           Y   L + K+ Y NA A FVDKHR+K     G+E+  SA+ F+IA G RP YP IPGA  
Sbjct: 106 YRVALREKKVKYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKE 165

Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           L ITSDDLFSL   PGK L+VGASY+ALECAG
Sbjct: 166 LCITSDDLFSLPYCPGKTLVVGASYVALECAG 197

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score =  111 bits (279), Expect = 2e-29
 Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
           Y   LE N +D     A FVD H V+  GE    +A + +IA GGRP+ PDIPGA  GIT
Sbjct: 99  YRNGLENNGVDLIEGFARFVDAHTVEVNGE--RYTADHILIATGGRPSIPDIPGAEYGIT 156

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SD  F+L + P +V +VGA YIA+E AG
Sbjct: 157 SDGFFALEELPKRVAVVGAGYIAVEFAG 184

Length = 450

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score =  101 bits (253), Expect = 1e-25
 Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 4/93 (4%)

Query: 73  NYEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYP-DIPGA- 128
           +Y   L  +K++Y N  A   D+H V +    +E T++A+  +IA GGRP+ P D+PGA 
Sbjct: 107 SYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAK 166

Query: 129 HLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
              ITSDD+FSL+KDPGK L+VGASYI LE AG
Sbjct: 167 EYSITSDDIFSLSKDPGKTLIVGASYIGLETAG 199

Length = 499

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGI 132
           Y+K LEKNK+D     A F     V+  G +   +A + +IA GG+P++P+ IPGA LG 
Sbjct: 97  YQKNLEKNKVDVIFGHARFTKDGTVEVNGRD--YTAPHILIATGGKPSFPENIPGAELGT 154

Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECAG 161
            SD  F+L + P +V++VGA YIA+E AG
Sbjct: 155 DSDGFFALEELPKRVVIVGAGYIAVELAG 183

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 72  NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEE-RTVSAQNFIIAVGGRPTYPDIPGA-- 128
              E  L+KN +D    +A FVD H V+  GE+  T++A N IIA G RP  P  PG   
Sbjct: 98  GGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDG 157

Query: 129 HLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
              + S D   L + P  +++VG  YI LE A 
Sbjct: 158 ARILDSSDALFLLELPKSLVIVGGGYIGLEFAS 190

Length = 454

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 82.9 bits (205), Expect = 3e-19
 Identities = 34/91 (37%), Positives = 49/91 (53%)

Query: 71  ENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL 130
              Y K L     +  + +A  V  + V+     +T +A+  +IAVGGRP  P +PG  L
Sbjct: 93  SGLYRKGLANAGAELLDGRAELVGPNTVEVLASGKTYTAEKILIAVGGRPPKPALPGHEL 152

Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           GITS++ F L   P  +L+ G  YIA+E AG
Sbjct: 153 GITSNEAFHLPTLPKSILIAGGGYIAVEFAG 183

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 75  EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
           E   +K KID     A FVD + V+    ER + A+N +IA G R   P IPG  L    
Sbjct: 99  EGLEKKPKIDKIKGTARFVDPNTVE-VNGER-IEAKNIVIATGSR--VPPIPGVWLILGD 154

Query: 132 --ITSDDLFSLNKDPGKVLLVGASYIALE 158
             +TSDD F L+K P  + ++G   I LE
Sbjct: 155 RLLTSDDAFELDKLPKSLAVIGGGVIGLE 183

Length = 460

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 70  KENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH 129
           KE   E  L    +D    +   V K         R ++    IIA G RP  P IPG  
Sbjct: 67  KEFGVEVLLGTEVVDIDRGEKTVVLKDVET----GREITYDKLIIATGARPRIPGIPGVE 122

Query: 130 LG-----ITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           +      I SD++  L + P +V++VG  YI LE A 
Sbjct: 123 VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAA 159

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 70  KENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG-A 128
           +   YE  L    +DY   +A F D   VK         A+ F+IA G RP  P IPG  
Sbjct: 90  RHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLK 149

Query: 129 HLG-ITSDDLFSLNKDPGKVLLVGASYIALECA 160
             G +TS++  +L++ P  + ++G   I +E A
Sbjct: 150 EAGYLTSEEALALDRIPESLAVIGGGAIGVELA 182

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 72  NNYEKELEK-NKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG-AH 129
           +  E+ L     +D F   A F   + V+  GE  T+ A+   I  G R   P IPG   
Sbjct: 98  HGSEQWLRGLEGVDVFRGHARFESPNTVRVGGE--TLRAKRIFINTGARAAIPPIPGLDE 155

Query: 130 LG-ITSDDLFSLNKDPGKVLLVGASYIALECA 160
           +G +T++ +FSL++ P  ++++G  YI LE A
Sbjct: 156 VGYLTNETIFSLDELPEHLVIIGGGYIGLEFA 187

Length = 463

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 65.7 bits (161), Expect = 5e-15
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
             ++VVELD+L NG++IQ  L E TGQ+TVPNIFI+GK I   S
Sbjct: 25 KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCS 69

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 65.6 bits (161), Expect = 6e-15
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
             VVELD+  +G++IQ  L E TGQ+TVPN+FI GK I
Sbjct: 26 KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFI 64

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
           Y+  L+   +     +   VD H V   G  +  +A+N +IAVGGRP  PDIPG    I 
Sbjct: 184 YKNILKNAGVTLIEGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPGIEHAID 241

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SD    L   P K+ +VG  YIALE AG
Sbjct: 242 SDAALDLPSKPEKIAIVGGGYIALEFAG 269

Length = 558

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 78  LEKNKIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYP-DIPGAHLGI- 132
            E+N++D    +A FVD H V      GE  T++A   +IA G RP  P D+   H  I 
Sbjct: 104 YERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIY 163

Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECA 160
            SD + SL+  P  +++ GA  I  E A
Sbjct: 164 DSDSILSLDHLPRSLIIYGAGVIGCEYA 191

Length = 461

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL 130
           Y++ L    +  +  +   V  + V   +  G +   +A++ +IA G R   P+IPG  L
Sbjct: 130 YKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKEL 189

Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            ITSD+  SL + P + +++G  YIA+E A 
Sbjct: 190 AITSDEALSLEELPKRAVVLGGGYIAVEFAS 220

Length = 499

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFAGE--ERTVSAQNFIIAVGGRPTYPDIPGAHLG---I 132
           L+KNK+     +A F+D   V   GE  E T+ A+N IIA G RP     P    G   I
Sbjct: 99  LKKNKVTVIKGEAKFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI 158

Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECA 160
           TS    +L + P  ++++G   I +E A
Sbjct: 159 TSTGALNLEEVPESLVIIGGGVIGVEFA 186

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 83  IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDL 137
           ID +   A F+    ++    E  ++A   +IA G RP  P +        H   TSD +
Sbjct: 104 IDVYRGHARFIGPKTLRTGDGE-EITADQVVIAAGSRPVIPPVIADSGVRYH---TSDTI 159

Query: 138 FSLNKDPGKVLLVGASYIALECA 160
             L + P  +++VG  +IA E A
Sbjct: 160 MRLPELPESLVIVGGGFIAAEFA 182

Length = 451

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 28/115 (24%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAG---------------------------EERT 106
           Y + L+K+ ++YF  K   + +++V                               + + 
Sbjct: 141 YRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200

Query: 107 VSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           +  +N +IAVG +P +PD+ G    I+SDD F + K+  ++ + G+ YIA+E   
Sbjct: 201 IEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKI-KEAKRIGIAGSGYIAVELIN 254

Length = 561

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 18/91 (19%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           VV+FSKS+CP+C +AK       L++  +       V +D+H       E     Q+++ 
Sbjct: 2   VVVFSKSYCPYCKRAKSL-----LKELGVKPA---VVELDQH-------EDGSEIQDYLQ 46

Query: 115 AVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
            + G+ T P+  I G  +G   DDL +L+K 
Sbjct: 47  ELTGQRTVPNVFIGGKFIG-GCDDLMALHKS 76

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 70  KENNYEKELEKNK-IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDI 125
           +E+ Y+  L +N  I   N +A FVD+  +      G E+TV      I  G RP  P +
Sbjct: 98  RESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPV 157

Query: 126 PGAHLG--ITSDDLFSLNKDPGKVLLVGASYIALECA 160
           PG      +TS     L+  P ++L++GAS +ALE A
Sbjct: 158 PGLAETPYLTSTSALELDHIPERLLVIGASVVALELA 194

Length = 468

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 78  LEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRP-TYPDI-PGAHLGIT 133
           L+KNK+D    +A  VD +  RV     E+T +A+N I+A G RP   P I     +  T
Sbjct: 102 LKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SD+  +L++ P  ++++G  YI +E A 
Sbjct: 162 SDEALNLDEVPKSLVVIGGGYIGVEFAS 189

Length = 462

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 47.8 bits (115), Expect = 3e-08
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
              +  E+D L +G  ++  L E +G  TVP IFI+G+ I
Sbjct: 22 SLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFI 61

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 29/94 (30%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSA----Q 110
           VV+FSKS CP+C +AK       LE   I++                 EE  +      +
Sbjct: 2   VVVFSKSTCPYCKRAKRL-----LESLGIEF-----------------EEIDILEDGELR 39

Query: 111 NFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNK 142
             +  + G PT P   I G  +G   DDL +L++
Sbjct: 40  EELKELSGWPTVPQIFINGEFIG-GYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 106 TVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            + A++ ++A G  P    IPG    I+S++ F L++ P +VL VG  +I++E AG
Sbjct: 149 RLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAG 204

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 20/91 (21%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           V I++K  CP+C +AK       L+K  +DY   + + VD               +  I 
Sbjct: 2   VEIYTKPNCPYCVRAK-----ALLDKKGVDY---EEIDVDGDPALR---------EEMIN 44

Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNKD 143
             GGR T P I     H+G   DDL++L + 
Sbjct: 45  RSGGRRTVPQIFIGDVHIG-GCDDLYALERK 74

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGI- 132
           Y +  E   ID ++  A FV    ++  G+   ++    +IA G RP  P    A  G+ 
Sbjct: 98  YRRGDETPNIDVYDGHARFVGPRTLR-TGDGEEITGDQIVIAAGSRPYIPPAI-ADSGVR 155

Query: 133 --TSDDLFSLNKDPGKVLLVGASYIALECA 160
             T++D+  L + P  +++VG  YIA E A
Sbjct: 156 YHTNEDIMRLPELPESLVIVGGGYIAAEFA 185

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 78  LEKNKIDYFNAKAVFVDKH---------RVKFA-GEERTVSAQNFIIAVGGRP-TYPDIP 126
           L+K KID F+     +             V+   GE   +  +N +IA G RP   P +P
Sbjct: 102 LKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161

Query: 127 -GAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
                 I+SD+  SL   P  +++VG   I LE A
Sbjct: 162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWA 196

Length = 472

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 19/91 (20%)

Query: 54  SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
           +V I++K  CP+C +AK     + L++  +DY   + + VD              A+  +
Sbjct: 2   NVTIYTKPGCPYCKRAK-----RLLDRKGVDY---EEIDVDDD--------EPEEAREMV 45

Query: 114 IAVGGRPTYPDI--PGAHLGITSDDLFSLNK 142
               G+ T P I   G H+G   DDL +L  
Sbjct: 46  KRGKGQRTVPQIFIGGKHVG-GCDDLDALEA 75

Length = 80

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 78  LEKNKIDYFNAKAVFVDKHR--VKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---- 131
           ++KNKI     KA F   HR  V++  +E  V A+ FIIA G  PT  ++P A       
Sbjct: 100 MKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT--ELPFAPFDGKWI 157

Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           I S    SL   P  +L+VG   I  E A 
Sbjct: 158 INSKHAMSLPSIPSSLLIVGGGVIGCEFAS 187

Length = 458

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 44.8 bits (107), Expect = 4e-07
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 18/69 (26%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           VV+F+K  CPFC +AK       L+   + +   + + VD+              +  + 
Sbjct: 1   VVLFTKPTCPFCKRAKR-----LLDSLGVKF---EEIDVDEDP----------EIREELK 42

Query: 115 AVGGRPTYP 123
            + G PT P
Sbjct: 43  ELSGWPTVP 51

Length = 60

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 16/91 (17%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           VV+FSKS+CP+C KAKE      L K  +     + V +D+              Q+++ 
Sbjct: 1   VVVFSKSYCPYCKKAKE-----ILAKLNVKP-AYEVVELDQL-------SNGSEIQDYLE 47

Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNKD 143
            + G+ T P+I   G  +G    DL +L K 
Sbjct: 48  EITGQRTVPNIFINGKFIG-GCSDLLALYKS 77

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 70  KENNYEKELEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 127
           +  N+    +   ID  + +A F++ H  RV        +  +   I  G +   P IPG
Sbjct: 79  RNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPG 138

Query: 128 --AHLGI-TSDDLFSLNKDPGKVLLVGASYIALECA 160
                G+  S  L +L + PG + ++G  YI +E A
Sbjct: 139 ITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFA 174

Length = 441

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           F+ +++D+ P   +I+  L E +G  TVP +FI G+HI
Sbjct: 25 KFEEIDVDEDP---EIREELKELSGWPTVPQVFIDGEHI 60

Length = 60

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 81  NKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLG---IT 133
            K+   N    F   + ++     G+   +   N IIA G RP    +P   H       
Sbjct: 106 RKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI--QLPFIPHDDPRIWD 163

Query: 134 SDDLFSLNKDPGKVLLVGASYIALE 158
           S D   L + P ++L++G   I LE
Sbjct: 164 STDALELKEVPKRLLVMGGGIIGLE 188

Length = 471

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 74  YEKELEKN-KIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPG-- 127
           Y+  L+ N  +      A F D + +      G ER ++A   +IA G  PT P IPG  
Sbjct: 112 YQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM 171

Query: 128 -AHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
                 +++ LFS ++ P  + ++G+S +A E A
Sbjct: 172 DTPYWTSTEALFS-DELPASLTVIGSSVVAAEIA 204

Length = 479

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 80  KNKIDYFNAKAVFV----DKHRVKFAGE-ERTVSAQNFIIAVGGRP-TYPDIPGAHLGIT 133
           KNKI     +  FV      + +K  GE E  ++A++ IIA G  P   P +P  +  I 
Sbjct: 112 KNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIIL 171

Query: 134 SDD-LFSLNKDPGKVLLVGASYIALE 158
            +    +  + P K+ ++GA  I LE
Sbjct: 172 DNTGALNFTEVPKKLAVIGAGVIGLE 197

Length = 475

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 74  YEKELEKN-KIDYFNAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGAH 129
           YE  L+ N  I   + +A F D   +      G ER V+    +IA G  P  P IPG  
Sbjct: 194 YEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPG-- 251

Query: 130 LGIT-----SDDLFSLNKDPGKVLLVGASYIALECA 160
           L  T     ++ L S +  P ++ ++G+S +ALE A
Sbjct: 252 LKETPYWTSTEALVS-DTIPERLAVIGSSVVALELA 286

Length = 561

>gnl|CDD|239327 cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

 Score = 38.7 bits (90), Expect = 8e-05
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 22/86 (25%)

Query: 54  SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
           SV +F+K  CPFC +AK       L++N I Y   + + + K       +    S +   
Sbjct: 2   SVSLFTKPGCPFCARAKA-----ALQENGISY---EEIPLGK-------DITGRSLR--- 43

Query: 114 IAVGGRPTYPD--IPGAHLGITSDDL 137
            AV G  T P   I G  +G  SDDL
Sbjct: 44  -AVTGAMTVPQVFIDGELIG-GSDDL 67

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH -> GSH reductase -> GSH -> GRX domain of hybrid -> PRX domain of hybrid -> peroxide substrate. Length = 72

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 20/95 (21%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
           ++KNKI   +    F D + ++     G   TV+  N IIA G       +PG  L    
Sbjct: 102 MKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRL--LPGTSLSENV 159

Query: 132 ------ITSDDLFSLNKDPGKVLLVGASYIALECA 160
                 I S +L      P  +++ GA  I +E A
Sbjct: 160 VTYEEQILSREL------PKSIVIAGAGAIGMEFA 188

Length = 466

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 21/90 (23%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           V I++K +CP+CT+AK       L    + +         + RV      R     + ++
Sbjct: 1   VTIYTKPYCPYCTRAK-----ALLSSKGVTF--------TEIRVDGDPALR-----DEMM 42

Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNK 142
              GR T P I     H+G   DDL++L++
Sbjct: 43  QRSGRRTVPQIFIGDVHVG-GCDDLYALDR 71

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 15 VVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          V E+DK P G  I+ AL        VP +F+ GK +
Sbjct: 37 VHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLV 72

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. Length = 99

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
            +++ +++D      + +  +    GQ+TVP IFI GKH+
Sbjct: 25 GVDYEEIDVDDDE-PEEAREMVKRGKGQRTVPQIFIGGKHV 64

Length = 80

>gnl|CDD|239274 cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFA 101
           V +++K  CP+C   K     + L++  I +   + V VD+      
Sbjct: 2   VTVYTKPDCPYCKATK-----RFLDERGIPF---EEVDVDEDPEALE 40

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein. Length = 73

>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 22/86 (25%)

Query: 54  SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
           SVV+F+K  CPFC KAK       L++   D+   + + +         + R  S    +
Sbjct: 9   SVVVFTKPGCPFCAKAKAT-----LKEKGYDF---EEIPLGN-------DARGRS----L 49

Query: 114 IAVGGRPTYPD--IPGAHLGITSDDL 137
            AV G  T P   I G  +G  SD+L
Sbjct: 50  RAVTGATTVPQVFIGGKLIG-GSDEL 74

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. Length = 79

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
             KNK+D+           +V    E   E  + A++ +IA G  PT   +PG  +    
Sbjct: 103 FRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPGVTIDNQR 160

Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
            I S    SL + P  ++++GA  I LE
Sbjct: 161 IIDSTGALSLPEVPKHLVVIGAGVIGLE 188

Length = 466

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 75  EKELEKNKIDYFNAKAVFVDKHRVKF-AGEERT-VSAQNFIIAVGGRPTYPDIPG---AH 129
              L  + +D ++A+A FV    ++  AG+E+  ++A+  +I  G       IPG   + 
Sbjct: 83  YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSK 142

Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
               S  + SL   P ++ ++G   I LE AG
Sbjct: 143 HVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174

Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG0405|consensus	478		99.7
KOG4716|consensus	503		99.7
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.69
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.66
PLN02546	558	glutathione reductase	99.64
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.61
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.61
PRK06116	450	glutathione reductase; Validated	99.6
PRK07846	451	mycothione reductase; Reviewed	99.6
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.6
PTZ00058	561	glutathione reductase; Provisional	99.59
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.59
PLN02507	499	glutathione reductase	99.59
PRK06370	463	mercuric reductase; Validated	99.58
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.57
TIGR02053	463	MerA mercuric reductase. This model represents the	99.55
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.54
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.53
PRK14727	479	putative mercuric reductase; Provisional	99.52
PRK14694	468	putative mercuric reductase; Provisional	99.52
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.52
PTZ00052	499	thioredoxin reductase; Provisional	99.51
PRK13748	561	putative mercuric reductase; Provisional	99.51
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.51
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.51
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.49
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.48
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.45
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.45
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.45
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.43
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.43
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.43
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.43
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.42
KOG1335|consensus	506		99.42
KOG1336|consensus	478		99.41
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.41
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.39
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.38
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.36
KOG2495|consensus	491		99.35
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.35
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.35
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.34
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.34
KOG1752|consensus	104		99.3
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.24
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.2
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.18
PRK10262	321	thioredoxin reductase; Provisional	99.16
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.12
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.07
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.06
PRK12831	464	putative oxidoreductase; Provisional	98.99
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.94
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	98.91
PRK10824	115	glutaredoxin-4; Provisional	98.91
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.9
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.87
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.86
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.8
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.79
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.78
PHA03050	108	glutaredoxin; Provisional	98.76
PLN02852	491	ferredoxin-NADP+ reductase	98.76
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.7
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.67
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.66
PRK13984	604	putative oxidoreductase; Provisional	98.65
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	98.65
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	98.64
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	98.63
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.61
KOG1346|consensus	659		98.6
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	98.59
KOG1752|consensus	104		98.55
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.53
PHA03050	108	glutaredoxin; Provisional	98.53
KOG0404|consensus	322		98.45
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.44
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	98.42
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.41
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	98.41
PRK10824	115	glutaredoxin-4; Provisional	98.4
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.39
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.32
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.31
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.3
PTZ00062	204	glutaredoxin; Provisional	98.3
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	98.29
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.26
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.22
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	98.21
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.2
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.19
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	98.16
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	98.14
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.13
PRK10638	83	glutaredoxin 3; Provisional	98.09
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	98.07
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.05
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.01
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.99
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.96
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.9
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.89
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.88
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.87
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.86
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.85
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.75
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.74
PRK11200	85	grxA glutaredoxin 1; Provisional	97.72
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.67
PRK10638	83	glutaredoxin 3; Provisional	97.65
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.64
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	97.64
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	97.64
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.57
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.55
PTZ00062	204	glutaredoxin; Provisional	97.46
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.44
KOG1399|consensus	448		97.29
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	97.24
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.22
PRK10329	81	glutaredoxin-like protein; Provisional	97.21
KOG1800|consensus	468		97.19
PRK10329	81	glutaredoxin-like protein; Provisional	97.19
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.12
KOG0911|consensus	227		97.09
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.02
PTZ00188	506	adrenodoxin reductase; Provisional	96.97
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.89
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.88
PRK11200	85	grxA glutaredoxin 1; Provisional	96.87
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	96.83
KOG0399|consensus	2142		96.76
KOG2755|consensus	334		96.7
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.65
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.62
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.57
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.5
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.3
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	96.29
PRK09897	534	hypothetical protein; Provisional	96.19
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	96.11
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	96.05
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	95.94
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	95.94
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	95.91
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.52
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.51
KOG2824|consensus	281		95.37
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.3
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.26
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	95.19
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	95.06
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.93
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.75
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	94.61
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.61
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	94.6
KOG1336|consensus	478		94.59
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	94.39
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	93.98
PRK06370	463	mercuric reductase; Validated	93.8
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	93.77
PRK12559	131	transcriptional regulator Spx; Provisional	93.57
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	93.46
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	93.29
PRK14694	468	putative mercuric reductase; Provisional	93.26
PRK13728	181	conjugal transfer protein TrbB; Provisional	93.11
TIGR02053	463	MerA mercuric reductase. This model represents the	93.02
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	92.98
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	92.97
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.88
PHA02125	75	thioredoxin-like protein	92.84
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	92.62
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.53
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	92.53
KOG3425|consensus	128		92.52
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	92.49
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	92.47
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	92.46
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	92.39
PRK06116	450	glutathione reductase; Validated	92.26
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	92.23
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	92.18
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	92.08
PRK07845	466	flavoprotein disulfide reductase; Reviewed	92.07
PTZ00188	506	adrenodoxin reductase; Provisional	92.05
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	92.01
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	91.91
PLN02507	499	glutathione reductase	91.76
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.5
COG2081	408	Predicted flavoproteins [General function predicti	91.39
KOG1335|consensus	506		91.39
PTZ00058	561	glutathione reductase; Provisional	91.18
PRK14727	479	putative mercuric reductase; Provisional	91.15
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	91.07
PRK13748	561	putative mercuric reductase; Provisional	90.89
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	90.88
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	90.7
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	90.7
PRK12831	464	putative oxidoreductase; Provisional	90.66
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	90.64
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	90.38
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	90.38
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	90.21
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	90.21
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	89.99
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	89.81
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	89.45
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	89.37
PRK10262	321	thioredoxin reductase; Provisional	89.3
PTZ00052	499	thioredoxin reductase; Provisional	89.03
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	88.95
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	88.93
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	88.92
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	88.74
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	88.73
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	88.45
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	88.39
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	88.2
PRK07846	451	mycothione reductase; Reviewed	88.07
KOG3851|consensus	446		87.87
PRK12779	944	putative bifunctional glutamate synthase subunit b	87.85
PRK12814	652	putative NADPH-dependent glutamate synthase small	87.71
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	87.65
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	87.57
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	87.13
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	87.12
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	86.95
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	86.8
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	86.79
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	86.68
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	86.43
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	86.33
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	86.29
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	86.2
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	86.13
KOG2495|consensus	491		86.02
PRK09564	444	coenzyme A disulfide reductase; Reviewed	85.98
PLN02546	558	glutathione reductase	85.52
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	85.41
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	84.8
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	84.78
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	84.68
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	84.64
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	84.63
PTZ00256	183	glutathione peroxidase; Provisional	84.55
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	84.5
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	84.45
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	84.44
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	84.42
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	84.35
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	84.12
PTZ00056	199	glutathione peroxidase; Provisional	83.73
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	83.38
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	83.34
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	83.09
PRK14989	847	nitrite reductase subunit NirD; Provisional	83.09
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	83.08
PTZ00383	497	malate:quinone oxidoreductase; Provisional	82.7
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	82.62
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	82.61
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	82.61
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	82.45
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	82.43
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	82.36
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	82.35
KOG3855|consensus	481		81.23
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	81.05
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	80.86
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	80.64
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	80.6
PLN02463	447	lycopene beta cyclase	80.59
PLN02412	167	probable glutathione peroxidase	80.49
PLN02697	529	lycopene epsilon cyclase	80.04

>KOG0405|consensus

Probab=99.70  E-value=1.6e-17  Score=129.32  Aligned_cols=91  Identities=42%  Similarity=0.757  Sum_probs=81.6

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      |++.|.+.+|+++.|++.++++.++++   ++....+++.+++||||++|.+|+|||.+.-.++|.++++++.|++++||
T Consensus       116 Y~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvv  195 (478)
T KOG0405|consen  116 YKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVV  195 (478)
T ss_pred             HHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEE
Confidence            567778889999999999999887776   55445689999999999999999999988888999999999999999999


Q ss_pred             CCcHHHHHhhcccC
Q psy7674         151 GASYIALECAGCDK  164 (164)
Q Consensus       151 GgG~~g~E~A~~l~  164 (164)
                      |+|||++|+|+.|+
T Consensus       196 GaGYIavE~Agi~~  209 (478)
T KOG0405|consen  196 GAGYIAVEFAGIFA  209 (478)
T ss_pred             ccceEEEEhhhHHh
Confidence            99999999998764

>KOG4716|consensus

Probab=99.70  E-value=2.5e-17  Score=127.98  Aligned_cols=94  Identities=56%  Similarity=0.966  Sum_probs=84.4

Q ss_pred             chhhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCc
Q psy7674          71 ENNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGK  146 (164)
Q Consensus        71 ~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~  146 (164)
                      +|.++-+|+++.|+++.+.++++|++++..   .+.+..++++.++||||.||+.|.|||. ++.+|+||++.+...|.+
T Consensus       121 NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp~IpG~~Ey~ITSDDlFsl~~~PGk  200 (503)
T KOG4716|consen  121 NWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIPGAKEYGITSDDLFSLPYEPGK  200 (503)
T ss_pred             cceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCCCCCCceeeeecccccccccCCCCc
Confidence            455666788889999999999999998877   4445679999999999999999999998 899999999999999999


Q ss_pred             EEEECCcHHHHHhhcccC
Q psy7674         147 VLLVGASYIALECAGCDK  164 (164)
Q Consensus       147 vvViGgG~~g~E~A~~l~  164 (164)
                      .+|||+||+|+|+|++|+
T Consensus       201 TLvVGa~YVaLECAgFL~  218 (503)
T KOG4716|consen  201 TLVVGAGYVALECAGFLK  218 (503)
T ss_pred             eEEEccceeeeehhhhHh
Confidence            999999999999999884

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.69  E-value=1.1e-16  Score=131.00  Aligned_cols=91  Identities=38%  Similarity=0.575  Sum_probs=79.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEeCC-eeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAG-EERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~-~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      .++.++++.+|+++.|++.+++++++.+++ +.+.+.++++||||||+|+.|++++.  ..++++++.+.+.+.|++++|
T Consensus        99 ~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvI  178 (454)
T COG1249          99 GVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVI  178 (454)
T ss_pred             hHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEE
Confidence            456777888999999999999999999943 23689999999999999999998876  557888887777799999999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       179 iGgG~IGlE~a~~~  192 (454)
T COG1249         179 VGGGYIGLEFASVF  192 (454)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.66  E-value=5.8e-16  Score=128.37  Aligned_cols=91  Identities=60%  Similarity=0.944  Sum_probs=79.3

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCcEE
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~vv  148 (164)
                      .++.++++.||+++.|++.+++++++.+   ++....+.||++|||||++|+.|++||. +...++++++.+...|++++
T Consensus       105 ~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ipG~~~~~~~~~~~~~~~~~~~~vv  184 (484)
T TIGR01438       105 GYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPYCPGKTL  184 (484)
T ss_pred             HHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCCCccceeecHHHhhcccccCCCEE
Confidence            4556788899999999999999998887   2323479999999999999999999997 66678899988888889999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       185 IIGgG~iG~E~A~~l  199 (484)
T TIGR01438       185 VVGASYVALECAGFL  199 (484)
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999876

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02546 glutathione reductase

Probab=99.64  E-value=7.9e-16  Score=129.25  Aligned_cols=88  Identities=41%  Similarity=0.694  Sum_probs=78.8

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGAS  153 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG  153 (164)
                      +..++++.||+++.|++++++++++.+++  +.+.||++|||||++|..|++||.++++++++++.+...+++++|||||
T Consensus       184 ~~~~l~~~gV~~i~G~a~~vd~~~V~v~G--~~~~~D~LVIATGs~p~~P~IpG~~~v~~~~~~l~~~~~~k~V~VIGgG  261 (558)
T PLN02546        184 YKNILKNAGVTLIEGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALDLPSKPEKIAIVGGG  261 (558)
T ss_pred             HHHHHHhCCcEEEEeEEEEccCCEEEECC--EEEECCEEEEeCCCCCCCCCCCChhhccCHHHHHhccccCCeEEEECCC
Confidence            44567788999999999999999888876  6799999999999999999999977788899988887788999999999


Q ss_pred             HHHHHhhccc
Q psy7674         154 YIALECAGCD  163 (164)
Q Consensus       154 ~~g~E~A~~l  163 (164)
                      ++|+|+|..|
T Consensus       262 ~iGvE~A~~L  271 (558)
T PLN02546        262 YIALEFAGIF  271 (558)
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.61  E-value=2.5e-15  Score=124.58  Aligned_cols=91  Identities=29%  Similarity=0.511  Sum_probs=76.9

Q ss_pred             hhHHHHhh-cCceEEeeEEEEeeCcEEEeCC----e---eEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCC
Q psy7674          73 NYEKELEK-NKIDYFNAKAVFVDKHRVKFAG----E---ERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDP  144 (164)
Q Consensus        73 ~~~~~l~~-~gv~~~~~~~~~~~~~~v~v~~----~---~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~  144 (164)
                      .+.+++++ .|++++.|++.+++++++.++.    .   .+.+.||++||||||+|+.|++||.+.++++++++.+...|
T Consensus       108 ~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p~~p~i~G~~~~~~~~~~~~~~~~~  187 (486)
T TIGR01423       108 SYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPP  187 (486)
T ss_pred             HHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCCCCCCCCCChhheechhhhhccccCC
Confidence            34556777 4999999999999999888731    1   24799999999999999999999976678888888887788


Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ++++|||||++|+|+|..|
T Consensus       188 ~~vvIIGgG~iG~E~A~~~  206 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIF  206 (486)
T ss_pred             CeEEEECCCHHHHHHHHHH
Confidence            9999999999999999654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.61  E-value=4.5e-15  Score=122.09  Aligned_cols=88  Identities=47%  Similarity=0.821  Sum_probs=77.0

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCC-CCCCccceechhhhccCcCCCCcEEEECC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP-DIPGAHLGITSDDLFSLNKDPGKVLLVGA  152 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p-~i~g~~~v~~~~~~~~~~~~~~~vvViGg  152 (164)
                      +...+++.||+++.+++.+.+++++.+++  ..+.||++|+|||++|+.| ++||.+...++++++.+...|++++||||
T Consensus        97 ~~~~l~~~gv~~~~g~~~~~~~~~v~v~~--~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~~~~~~~~~~vvIIGg  174 (450)
T TIGR01421        97 YQKNLEKNKVDVIFGHARFTKDGTVEVNG--RDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELPKRVVIVGA  174 (450)
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHhhCccccCCeEEEECC
Confidence            45667788999999999888888888776  5799999999999999999 89987555788888888888999999999


Q ss_pred             cHHHHHhhccc
Q psy7674         153 SYIALECAGCD  163 (164)
Q Consensus       153 G~~g~E~A~~l  163 (164)
                      |++|+|+|..|
T Consensus       175 G~iG~E~A~~l  185 (450)
T TIGR01421       175 GYIAVELAGVL  185 (450)
T ss_pred             CHHHHHHHHHH
Confidence            99999999876

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06116 glutathione reductase; Validated

Probab=99.60  E-value=5e-15  Score=121.70  Aligned_cols=88  Identities=49%  Similarity=0.815  Sum_probs=77.8

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGAS  153 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG  153 (164)
                      +++.+++.||+++.+++++++++++++++  ..+.||+||+|||++|+.|++||.+.+.++++++.+...+++++|||||
T Consensus        99 ~~~~l~~~gv~~~~g~~~~v~~~~v~~~g--~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG  176 (450)
T PRK06116         99 YRNGLENNGVDLIEGFARFVDAHTVEVNG--ERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEELPKRVAVVGAG  176 (450)
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCcceeEchhHhhCccccCCeEEEECCC
Confidence            34557778999999999999998888865  6799999999999999999999976778888888887788999999999


Q ss_pred             HHHHHhhccc
Q psy7674         154 YIALECAGCD  163 (164)
Q Consensus       154 ~~g~E~A~~l  163 (164)
                      ++|+|+|..|
T Consensus       177 ~~g~E~A~~l  186 (450)
T PRK06116        177 YIAVEFAGVL  186 (450)
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>PRK07846 mycothione reductase; Reviewed

Probab=99.60  E-value=3.3e-15  Score=122.93  Aligned_cols=84  Identities=27%  Similarity=0.460  Sum_probs=74.6

Q ss_pred             HhhcCceEEeeEEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEECCcH
Q psy7674          78 LEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVGASY  154 (164)
Q Consensus        78 l~~~gv~~~~~~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViGgG~  154 (164)
                      +++.|++++.|++.+++++++++ ++  +.+.||++|||||++|+.|++||.  ..+.+.++++.+...|++++|||||+
T Consensus        99 ~~~~~v~~~~g~a~~~~~~~V~v~~g--~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~  176 (451)
T PRK07846         99 RDTPNIDVYRGHARFIGPKTLRTGDG--EEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIVGGGF  176 (451)
T ss_pred             hhhCCcEEEEEEEEEecCCEEEECCC--CEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHHHhhhhhcCCeEEEECCCH
Confidence            67789999999999999999988 44  579999999999999999999985  34678888888877889999999999


Q ss_pred             HHHHhhccc
Q psy7674         155 IALECAGCD  163 (164)
Q Consensus       155 ~g~E~A~~l  163 (164)
                      +|+|+|..|
T Consensus       177 iG~E~A~~l  185 (451)
T PRK07846        177 IAAEFAHVF  185 (451)
T ss_pred             HHHHHHHHH
Confidence            999999876

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.60  E-value=7.1e-15  Score=121.52  Aligned_cols=89  Identities=26%  Similarity=0.368  Sum_probs=74.5

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCC-CCCCCc-cceechhhhccCcCCCCcEEE
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY-PDIPGA-HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~-p~i~g~-~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      ..++++.||+++.+++.+++++++.+   +++...+.||++||||||+|+. |.+++. ++++++++++.+...|++++|
T Consensus       100 ~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvI  179 (471)
T PRK06467        100 AGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRLLV  179 (471)
T ss_pred             HHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEEChHHhhccccCCCeEEE
Confidence            35567789999999999999888777   2322579999999999999974 446665 678888999888888899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       180 iGgG~iG~E~A~~l  193 (471)
T PRK06467        180 MGGGIIGLEMGTVY  193 (471)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>PTZ00058 glutathione reductase; Provisional

Probab=99.59  E-value=5.7e-15  Score=124.11  Aligned_cols=89  Identities=29%  Similarity=0.688  Sum_probs=74.7

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---------------------------CCeeEEEEeceEEEecCCCCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---------------------------AGEERTVSAQNFIIAVGGRPTYPDIP  126 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---------------------------~~~~~~~~~d~liiAtGs~~~~p~i~  126 (164)
                      +++.+++.||+++.|++.+.+++++.+                           ..++..+.||++|||||++|+.|++|
T Consensus       141 ~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~lVIATGS~P~~P~Ip  220 (561)
T PTZ00058        141 YRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPDVK  220 (561)
T ss_pred             HHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEEEEecCCCCCCCCCC
Confidence            456678889999999999998887642                           01125799999999999999999999


Q ss_pred             CccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         127 GAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       127 g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |.+.++++++++.+.. +++++|||||++|+|+|..|
T Consensus       221 G~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l  256 (561)
T PTZ00058        221 GKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVV  256 (561)
T ss_pred             CceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHH
Confidence            9766788888887765 89999999999999999876

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.59  E-value=7.4e-15  Score=120.61  Aligned_cols=91  Identities=36%  Similarity=0.656  Sum_probs=76.6

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGA  152 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGg  152 (164)
                      .++.++++.|++++.+++.+++++++.+..++..+.||++|+|||++|+.|++||.+...++++++.+...+++++||||
T Consensus        95 ~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~~l~~~~~~vvVIGg  174 (446)
T TIGR01424        95 LYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAFHLPTLPKSILILGG  174 (446)
T ss_pred             HHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhhcccccCCeEEEECC
Confidence            34566788899999999999998877762112679999999999999999999987556778888887777899999999


Q ss_pred             cHHHHHhhccc
Q psy7674         153 SYIALECAGCD  163 (164)
Q Consensus       153 G~~g~E~A~~l  163 (164)
                      |++|+|+|..|
T Consensus       175 G~~g~E~A~~l  185 (446)
T TIGR01424       175 GYIAVEFAGIW  185 (446)
T ss_pred             cHHHHHHHHHH
Confidence            99999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=99.59  E-value=8.6e-15  Score=121.80  Aligned_cols=89  Identities=30%  Similarity=0.551  Sum_probs=75.4

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEEC
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVG  151 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViG  151 (164)
                      +.++++.+|+++.+++.+++++++.+   ++....+.||+||||||++|+.|++||.+...++++++.+...+++++|||
T Consensus       131 ~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ipG~~~~~~~~~~~~l~~~~k~vvVIG  210 (499)
T PLN02507        131 KRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITSDEALSLEELPKRAVVLG  210 (499)
T ss_pred             HHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCCCCCccceechHHhhhhhhcCCeEEEEC
Confidence            45567789999999999999887777   442236899999999999999999998755578888888877889999999


Q ss_pred             CcHHHHHhhccc
Q psy7674         152 ASYIALECAGCD  163 (164)
Q Consensus       152 gG~~g~E~A~~l  163 (164)
                      ||++|+|+|..|
T Consensus       211 gG~ig~E~A~~l  222 (499)
T PLN02507        211 GGYIAVEFASIW  222 (499)
T ss_pred             CcHHHHHHHHHH
Confidence            999999999876

>PRK06370 mercuric reductase; Validated

Probab=99.58  E-value=1.3e-14  Score=119.66  Aligned_cols=88  Identities=32%  Similarity=0.518  Sum_probs=76.5

Q ss_pred             hHHHHhhc-CceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEE
Q psy7674          74 YEKELEKN-KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        74 ~~~~l~~~-gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      +..++++. |++++.+++.+++.+++.+++  ..+.||++|+|||++|+.|++||.  ..+++.++++.....+++++||
T Consensus       100 ~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~--~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvVI  177 (463)
T PRK06370        100 SEQWLRGLEGVDVFRGHARFESPNTVRVGG--ETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDELPEHLVII  177 (463)
T ss_pred             HHHHHhcCCCcEEEEEEEEEccCCEEEECc--EEEEeCEEEEcCCCCCCCCCCCCCCcCceEcchHhhCccccCCEEEEE
Confidence            44567776 999999999888888888876  579999999999999999999997  4577888888777778999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       178 GgG~~g~E~A~~l  190 (463)
T PRK06370        178 GGGYIGLEFAQMF  190 (463)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.57  E-value=1.9e-14  Score=118.55  Aligned_cols=90  Identities=34%  Similarity=0.447  Sum_probs=76.0

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      ++.++++.+++++.|++.+++++++.+  ++....+.||++|||||++|+.|++++.  ..++++++++.+...|++++|
T Consensus        96 ~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvI  175 (458)
T PRK06912         96 IQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLI  175 (458)
T ss_pred             HHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcchHHhCccccCCcEEE
Confidence            445677789999999999999888877  2322469999999999999988887764  567888999988888999999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       176 IGgG~iG~E~A~~l  189 (458)
T PRK06912        176 VGGGVIGCEFASIY  189 (458)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999865

>TIGR02053 MerA mercuric reductase

Probab=99.55  E-value=3.1e-14  Score=117.37  Aligned_cols=90  Identities=32%  Similarity=0.524  Sum_probs=76.7

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEEC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVG  151 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViG  151 (164)
                      +..++++.+++++.+++.+.+.+++.+++....+.||++|+|||++|+.|++||.  ..++++++++.+...+++++|||
T Consensus        94 ~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvIIG  173 (463)
T TIGR02053        94 YEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIPESLAVIG  173 (463)
T ss_pred             HHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhhhCcccCCCeEEEEC
Confidence            4466788899999999999998888884322468999999999999999999986  34778888887777789999999


Q ss_pred             CcHHHHHhhccc
Q psy7674         152 ASYIALECAGCD  163 (164)
Q Consensus       152 gG~~g~E~A~~l  163 (164)
                      ||++|+|+|..|
T Consensus       174 gG~~g~E~A~~l  185 (463)
T TIGR02053       174 GGAIGVELAQAF  185 (463)
T ss_pred             CCHHHHHHHHHH
Confidence            999999999876

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.54  E-value=3.6e-14  Score=116.26  Aligned_cols=88  Identities=26%  Similarity=0.403  Sum_probs=75.1

Q ss_pred             HHHhhcCceEEeeEEEEeeCcEEEeC--CeeEEEEeceEEEecCCCCCCCCCCCc---cceechhhhccCcCCCCcEEEE
Q psy7674          76 KELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPGA---HLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        76 ~~l~~~gv~~~~~~~~~~~~~~v~v~--~~~~~~~~d~liiAtGs~~~~p~i~g~---~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      +.+.+.+|+++.+++.+++.+++.+.  ++...+.||++|+|||++|+.|++||.   ++++++++++.+...+++++||
T Consensus        84 ~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvII  163 (438)
T PRK07251         84 AMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGII  163 (438)
T ss_pred             HHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEEE
Confidence            45677899999999988888888772  222479999999999999999999985   4588888888887788999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       164 GgG~~g~e~A~~l  176 (438)
T PRK07251        164 GGGNIGLEFAGLY  176 (438)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.53  E-value=6e-14  Score=115.57  Aligned_cols=90  Identities=32%  Similarity=0.471  Sum_probs=75.6

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vv  148 (164)
                      +.+++++.+++++.+++.+++.+++.+   ++....+.||++|+|||++|+.|++++.  +.++++++++.+...+++++
T Consensus       100 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~~~~~~~~~~~~~~~v~  179 (461)
T PRK05249        100 RRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILSLDHLPRSLI  179 (461)
T ss_pred             HHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEEcHHHhhchhhcCCeEE
Confidence            345677889999999999998887766   3322479999999999999999887664  67888998888878899999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       180 IiGgG~~g~E~A~~l  194 (461)
T PRK05249        180 IYGAGVIGCEYASIF  194 (461)
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999876

>PRK14727 putative mercuric reductase; Provisional

Probab=99.52  E-value=7.5e-14  Score=115.67  Aligned_cols=89  Identities=29%  Similarity=0.428  Sum_probs=71.0

Q ss_pred             HHHHhhc-CceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEE
Q psy7674          75 EKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        75 ~~~l~~~-gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vv  148 (164)
                      ...++.. +++++.|++.+.+++++.+   ++....+.||+||||||++|+.|++||.  ...++.++.+.....|++++
T Consensus       113 ~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~l~~~~~~k~vv  192 (479)
T PRK14727        113 QSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFSDELPASLT  192 (479)
T ss_pred             HHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccceecchHHhccccCCCeEE
Confidence            3445544 8999999999999887776   3322469999999999999999999996  23456666665556789999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       193 VIGgG~iG~E~A~~l  207 (479)
T PRK14727        193 VIGSSVVAAEIAQAY  207 (479)
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999876

>PRK14694 putative mercuric reductase; Provisional

Probab=99.52  E-value=6.7e-14  Score=115.62  Aligned_cols=88  Identities=35%  Similarity=0.528  Sum_probs=71.0

Q ss_pred             HHHhhc-CceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674          76 KELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        76 ~~l~~~-gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      ..++++ +++++.++++++|++...+   +++...+.||+||+|||++|+.|++||.  ..+.++++.+.+...+++++|
T Consensus       104 ~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~l~~~~~~vvV  183 (468)
T PRK14694        104 SILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPERLLV  183 (468)
T ss_pred             HHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCCceEcchhhhchhcCCCeEEE
Confidence            335444 8999999999998766555   3322479999999999999999999996  235667777777677899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       184 iG~G~~G~E~A~~l  197 (468)
T PRK14694        184 IGASVVALELAQAF  197 (468)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.52  E-value=5.5e-14  Score=119.94  Aligned_cols=90  Identities=27%  Similarity=0.332  Sum_probs=75.3

Q ss_pred             hHHHHhhcC-------ceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCC
Q psy7674          74 YEKELEKNK-------IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDP  144 (164)
Q Consensus        74 ~~~~l~~~g-------v~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~  144 (164)
                      +...+++.+       ++++.|.+.+++++++.+..++..+.||++|||||++|+.|++++.  +.++++++++.+...+
T Consensus       233 ~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lp  312 (659)
T PTZ00153        233 IENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQ  312 (659)
T ss_pred             HHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcC
Confidence            455666664       8999999999999988873222679999999999999999886554  5689999998888788


Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ++++|||||++|+|+|..|
T Consensus       313 k~VvIVGgG~iGvE~A~~l  331 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIY  331 (659)
T ss_pred             CceEEECCCHHHHHHHHHH
Confidence            9999999999999999876

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.51  E-value=7.3e-14  Score=116.28  Aligned_cols=90  Identities=51%  Similarity=0.897  Sum_probs=75.2

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe-C-CeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcCCCCcEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF-A-GEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v-~-~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      ++..++..+|+++.+++.+.+.+++.+ + +....+.||++|||||++|+.|+ +||. +...++++++.+...|++++|
T Consensus       108 ~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~~~~~~~~~~~~~~~~~~~~vvI  187 (499)
T PTZ00052        108 YRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITSDDIFSLSKDPGKTLI  187 (499)
T ss_pred             HHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCccceeecHHHHhhhhcCCCeEEE
Confidence            344455679999999999988888877 2 22357999999999999999885 9987 566788898888778899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       188 IGgG~iG~E~A~~l  201 (499)
T PTZ00052        188 VGASYIGLETAGFL  201 (499)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>PRK13748 putative mercuric reductase; Provisional

Probab=99.51  E-value=9.8e-14  Score=116.87  Aligned_cols=86  Identities=31%  Similarity=0.470  Sum_probs=69.8

Q ss_pred             Hhhc-CceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCcc--ceechhhhccCcCCCCcEEEEC
Q psy7674          78 LEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAH--LGITSDDLFSLNKDPGKVLLVG  151 (164)
Q Consensus        78 l~~~-gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~~--~v~~~~~~~~~~~~~~~vvViG  151 (164)
                      +++. +|+++.+++.+++++++.+   ++....+.||+||+|||++|+.|++||.+  .+++.++.+.....|++++|||
T Consensus       198 ~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViG  277 (561)
T PRK13748        198 LDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWTSTEALVSDTIPERLAVIG  277 (561)
T ss_pred             HhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCccceEccHHHhhcccCCCeEEEEC
Confidence            4444 8999999999999887766   33224699999999999999999999962  3556666666666789999999


Q ss_pred             CcHHHHHhhccc
Q psy7674         152 ASYIALECAGCD  163 (164)
Q Consensus       152 gG~~g~E~A~~l  163 (164)
                      ||++|+|+|..|
T Consensus       278 gG~ig~E~A~~l  289 (561)
T PRK13748        278 SSVVALELAQAF  289 (561)
T ss_pred             CCHHHHHHHHHH
Confidence            999999999876

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.51  E-value=1.3e-13  Score=113.91  Aligned_cols=90  Identities=31%  Similarity=0.454  Sum_probs=72.4

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCc-------EEEe---CCeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKH-------RVKF---AGEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLN  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~-------~v~v---~~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~  141 (164)
                      +..++++.+|+++.++++++|++       ++.+   ++....+.||+||+|||++|+.|+ ++.. .+++++++++.+.
T Consensus        98 ~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~~~~~~~~~~~~  177 (472)
T PRK05976         98 VAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDEALSLE  177 (472)
T ss_pred             HHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCceEEcchHhhCcc
Confidence            34566778999999999999887       6666   332257999999999999997654 3322 5578888888887


Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++++|||||++|+|+|..|
T Consensus       178 ~~~~~vvIIGgG~~G~E~A~~l  199 (472)
T PRK05976        178 TLPKSLVIVGGGVIGLEWASML  199 (472)
T ss_pred             ccCCEEEEECCCHHHHHHHHHH
Confidence            7889999999999999999876

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.51  E-value=1.2e-13  Score=114.15  Aligned_cols=91  Identities=24%  Similarity=0.392  Sum_probs=74.3

Q ss_pred             hhHHHHhhcCceEEeeEEEE----eeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVF----VDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKD  143 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~----~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~  143 (164)
                      .+++++++.+|+++.+++++    ++++++++   ++....+.||+||+|||++|+.|+.++.  +.+++.++++.+...
T Consensus        97 ~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~  176 (466)
T PRK07845         97 DIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLYDLDEL  176 (466)
T ss_pred             HHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCCCceEEeehhhhccccc
Confidence            35567888899999999988    66777766   3322369999999999999987775443  568888888887777


Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      +++++|||||++|+|+|..|
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l  196 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAY  196 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            89999999999999999876

>TIGR03452 mycothione_red mycothione reductase

Probab=99.49  E-value=1e-13  Score=114.14  Aligned_cols=82  Identities=28%  Similarity=0.467  Sum_probs=70.4

Q ss_pred             hcCceEEeeEEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEECCcHHH
Q psy7674          80 KNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVGASYIA  156 (164)
Q Consensus        80 ~~gv~~~~~~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViGgG~~g  156 (164)
                      +.||+++.|++.+.+.+++.+ ++  ..+.||++|||||++|+.|++.+.  ..+.+.++++.+.+.|++++|||||++|
T Consensus       104 ~~gv~~~~g~~~~~~~~~V~~~~g--~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig  181 (452)
T TIGR03452       104 TPNIDVYDGHARFVGPRTLRTGDG--EEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIA  181 (452)
T ss_pred             cCCeEEEEEEEEEecCCEEEECCC--cEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHH
Confidence            379999999999999999888 44  579999999999999998885432  3467888888887788999999999999


Q ss_pred             HHhhccc
Q psy7674         157 LECAGCD  163 (164)
Q Consensus       157 ~E~A~~l  163 (164)
                      +|+|..|
T Consensus       182 ~E~A~~l  188 (452)
T TIGR03452       182 AEFAHVF  188 (452)
T ss_pred             HHHHHHH
Confidence            9999876

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.48  E-value=2.4e-13  Score=111.48  Aligned_cols=83  Identities=25%  Similarity=0.474  Sum_probs=70.4

Q ss_pred             cCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc---cceechhhhccCcCCCCcEEEECCcHH
Q psy7674          81 NKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA---HLGITSDDLFSLNKDPGKVLLVGASYI  155 (164)
Q Consensus        81 ~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~---~~v~~~~~~~~~~~~~~~vvViGgG~~  155 (164)
                      .+++++.+++++++.+.+.+  .+....+.||++|+|||++|+.|++||.   ..++++++++.+...+++++|||||++
T Consensus        90 ~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~  169 (441)
T PRK08010         90 PNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYI  169 (441)
T ss_pred             CCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEEEECCCHH
Confidence            49999999999998877766  2212369999999999999999999995   357888888887778899999999999


Q ss_pred             HHHhhccc
Q psy7674         156 ALECAGCD  163 (164)
Q Consensus       156 g~E~A~~l  163 (164)
                      |+|+|..|
T Consensus       170 g~E~A~~l  177 (441)
T PRK08010        170 GVEFASMF  177 (441)
T ss_pred             HHHHHHHH
Confidence            99999875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.45  E-value=5.6e-13  Score=107.26  Aligned_cols=87  Identities=25%  Similarity=0.303  Sum_probs=65.5

Q ss_pred             HHHHhhcCceEEee-EEEEeeC--cEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceech---hhhccC---cCCCC
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDK--HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITS---DDLFSL---NKDPG  145 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~--~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~---~~~~~~---~~~~~  145 (164)
                      +++++++|++++.+ ++..+|.  +++.+++  ..+.||+||+|||++|..|++||.+.++++   +++..+   ...++
T Consensus        65 ~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~--~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~  142 (377)
T PRK04965         65 GEFAEQFNLRLFPHTWVTDIDAEAQVVKSQG--NQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQ  142 (377)
T ss_pred             HHHHHhCCCEEECCCEEEEEECCCCEEEECC--eEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCC
Confidence            35567789999876 6777774  4455565  679999999999999999999997435443   333222   13468


Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      +++|||||++|+|+|..|
T Consensus       143 ~vvViGgG~~g~e~A~~L  160 (377)
T PRK04965        143 RVLVVGGGLIGTELAMDL  160 (377)
T ss_pred             eEEEECCCHHHHHHHHHH
Confidence            999999999999999876

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.45  E-value=4.8e-13  Score=108.33  Aligned_cols=87  Identities=20%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             HHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceec---hhhhccCcC---
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGIT---SDDLFSLNK---  142 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~---~~~~~~~~~---  142 (164)
                      .+++.+.+|+++.+ .+..+|.  +.+.+ ++  ..+.||+||+|||++|+.|++++.  +++++   ++|+..+..   
T Consensus        65 ~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~  142 (396)
T PRK09754         65 ANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ  142 (396)
T ss_pred             HHHHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh
Confidence            34567789999988 4667764  45555 44  579999999999999988877653  55655   456544432   


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l  163 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASA  163 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999999876

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.45  E-value=5.8e-13  Score=109.77  Aligned_cols=90  Identities=33%  Similarity=0.492  Sum_probs=72.5

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeC--CeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcCCCCcEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~--~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      ++.++++.||+++.+++++++++++++.  .+...+.||+||+|||++|..|+ ++.. ..++++++++.+...+++++|
T Consensus        98 ~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~~~~~~~~~~~~~~vvV  177 (462)
T PRK06416         98 VEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALNLDEVPKSLVV  177 (462)
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEcchHhhCccccCCeEEE
Confidence            4556778899999999999998877773  11257999999999999997654 3211 457788888887778899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       178 vGgG~~g~E~A~~l  191 (462)
T PRK06416        178 IGGGYIGVEFASAY  191 (462)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.43  E-value=1.1e-12  Score=108.33  Aligned_cols=88  Identities=30%  Similarity=0.434  Sum_probs=69.7

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc----cceechhhhccCcCCCCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA----HLGITSDDLFSLNKDPGK  146 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~----~~v~~~~~~~~~~~~~~~  146 (164)
                      ++.++++.+|+++.|++.+.+++++.+   ++....+.||++|||||++|..  +||.    ..++++++++.+...|++
T Consensus        99 ~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~--ipg~~~~~~~~~~~~~~~~~~~~~~~  176 (466)
T PRK06115         99 VEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP--LPGVTIDNQRIIDSTGALSLPEVPKH  176 (466)
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC--CCCCCCCCCeEECHHHHhCCccCCCe
Confidence            445567779999999988877777766   3322469999999999999853  4442    456788888887778899


Q ss_pred             EEEECCcHHHHHhhccc
Q psy7674         147 VLLVGASYIALECAGCD  163 (164)
Q Consensus       147 vvViGgG~~g~E~A~~l  163 (164)
                      ++|||||++|+|+|..|
T Consensus       177 vvIIGgG~ig~E~A~~l  193 (466)
T PRK06115        177 LVVIGAGVIGLELGSVW  193 (466)
T ss_pred             EEEECCCHHHHHHHHHH
Confidence            99999999999999876

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.43  E-value=9.6e-13  Score=108.39  Aligned_cols=90  Identities=31%  Similarity=0.435  Sum_probs=74.2

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeC--CeeEEEEeceEEEecCCCCCCCCCC-Cc--cceechhhhccCcCCCCcEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIP-GA--HLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~--~~~~~~~~d~liiAtGs~~~~p~i~-g~--~~v~~~~~~~~~~~~~~~vv  148 (164)
                      +..++++.|++++.+++.+++++.+.+.  +....+.||++|+|||++|+.|++| +.  ..+.++++.+.+...+++++
T Consensus        95 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv  174 (461)
T TIGR01350        95 VKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVITSTGALNLKEVPESLV  174 (461)
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEcchHHhccccCCCeEE
Confidence            3456677899999999999988887772  2114799999999999999988876 43  45788899888877889999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       175 ViGgG~~g~e~A~~l  189 (461)
T TIGR01350       175 IIGGGVIGIEFASIF  189 (461)
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.43  E-value=6.5e-13  Score=116.33  Aligned_cols=88  Identities=30%  Similarity=0.426  Sum_probs=68.2

Q ss_pred             hHHHHhhcCceEEeeE-EEEeeCc--EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccC---c
Q psy7674          74 YEKELEKNKIDYFNAK-AVFVDKH--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSL---N  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~-~~~~~~~--~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~---~  141 (164)
                      ...++++.||+++.++ ++.+|.+  .+.+ ++  ..+.||+|||||||+|+.|++||.  ..++   +.+++..+   .
T Consensus        65 ~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~  142 (847)
T PRK14989         65 REGFYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA  142 (847)
T ss_pred             CHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH
Confidence            3567888999999985 6677753  3444 34  679999999999999999999996  3444   55665543   2


Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++++|||||++|+|+|..|
T Consensus       143 ~~~k~vvVIGgG~iGlE~A~~L  164 (847)
T PRK14989        143 RRSKRGAVVGGGLLGLEAAGAL  164 (847)
T ss_pred             hcCCeEEEECCCHHHHHHHHHH
Confidence            3568999999999999999876

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.43  E-value=5.1e-13  Score=106.82  Aligned_cols=89  Identities=16%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-cceec---hhhhcc------
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGIT---SDDLFS------  139 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~---~~~~~~------  139 (164)
                      .++++++++|++++.++++.+|.  +++.+ ++  +.+.||+||+|||++|..|++||. +++++   .+++..      
T Consensus        59 ~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~  136 (364)
T TIGR03169        59 DLRRLARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALL  136 (364)
T ss_pred             cHHHHHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHH
Confidence            35577788899999999988874  45655 44  579999999999999999999986 54442   222221      


Q ss_pred             --C--cCCCCcEEEECCcHHHHHhhccc
Q psy7674         140 --L--NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       140 --~--~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                        .  ....++++|||||++|+|+|..|
T Consensus       137 ~~~~~~~~~~~vvVvG~G~~g~E~A~~l  164 (364)
T TIGR03169       137 ESADAPPGTKRLAVVGGGAAGVEIALAL  164 (364)
T ss_pred             HHHhcCCCCceEEEECCCHHHHHHHHHH
Confidence              1  11347999999999999999876

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.42  E-value=1.2e-12  Score=108.39  Aligned_cols=90  Identities=26%  Similarity=0.411  Sum_probs=71.8

Q ss_pred             hHHHHhhcCceEEeeEEEEee----CcEEEeC-CeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcCCCCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVD----KHRVKFA-GEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNKDPGK  146 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~----~~~v~v~-~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~~~~~  146 (164)
                      ++.+++..+|+++.+++.+++    .+++.++ ++...+.||++|+|||++|+.|+ ++.. ..++++++++.+...|++
T Consensus       106 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~  185 (475)
T PRK06327        106 IEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNFTEVPKK  185 (475)
T ss_pred             HHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCCCCCCceEECcHHHhcccccCCe
Confidence            445667789999999998887    6677773 22257999999999999997554 4433 567788888887778899


Q ss_pred             EEEECCcHHHHHhhccc
Q psy7674         147 VLLVGASYIALECAGCD  163 (164)
Q Consensus       147 vvViGgG~~g~E~A~~l  163 (164)
                      ++|||||++|+|+|..|
T Consensus       186 vvVvGgG~~g~E~A~~l  202 (475)
T PRK06327        186 LAVIGAGVIGLELGSVW  202 (475)
T ss_pred             EEEECCCHHHHHHHHHH
Confidence            99999999999999865

>KOG1335|consensus

Probab=99.42  E-value=3.2e-13  Score=106.70  Aligned_cols=89  Identities=33%  Similarity=0.546  Sum_probs=77.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc----cceechhhhccCcCCCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA----HLGITSDDLFSLNKDPG  145 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~----~~v~~~~~~~~~~~~~~  145 (164)
                      .++.+|++.+|+++.|...+++++++.+   ++....+.++++|+||||.  ++++||.    +.+.+++.++++.+-|+
T Consensus       135 gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V~~~PGI~IDekkIVSStgALsL~~vPk  212 (506)
T KOG1335|consen  135 GIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--VTPFPGITIDEKKIVSSTGALSLKEVPK  212 (506)
T ss_pred             HHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--cCCCCCeEecCceEEecCCccchhhCcc
Confidence            4778899999999999999999999988   5655789999999999995  3444454    78999999999999999


Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      +++|||||+||+|++..+
T Consensus       213 ~~~viG~G~IGLE~gsV~  230 (506)
T KOG1335|consen  213 KLTVIGAGYIGLEMGSVW  230 (506)
T ss_pred             eEEEEcCceeeeehhhHH
Confidence            999999999999998653

>KOG1336|consensus

Probab=99.41  E-value=2.6e-12  Score=103.85  Aligned_cols=110  Identities=21%  Similarity=0.321  Sum_probs=81.3

Q ss_pred             CCceEEEeccC-Cccccccc-----------chhhHHHHhhcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEe
Q psy7674          52 NNSVVIFSKSW-CPFCTKAK-----------ENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIA  115 (164)
Q Consensus        52 ~d~vvv~~~~~-cp~~~~~~-----------~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiA  115 (164)
                      +..++++++++ .||.++..           .....+++++++|+++.+ .++.+|  .+++.+ +|  +.+.|++|+||
T Consensus        99 ~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilA  176 (478)
T KOG1336|consen   99 TERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIA  176 (478)
T ss_pred             CcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEe
Confidence            67777777555 44555332           223457899999999998 566776  456666 55  89999999999


Q ss_pred             cCCCCCCCCCCCc--cceech---hhhc---cCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         116 VGGRPTYPDIPGA--HLGITS---DDLF---SLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       116 tGs~~~~p~i~g~--~~v~~~---~~~~---~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ||++|+.|++||.  +++...   +|+.   ...+...+|+++|||++|+|+|..|
T Consensus       177 TGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l  232 (478)
T KOG1336|consen  177 TGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL  232 (478)
T ss_pred             ecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence            9999999999997  555543   3332   2223467899999999999999876

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=6.6e-13  Score=103.99  Aligned_cols=90  Identities=19%  Similarity=0.207  Sum_probs=67.0

Q ss_pred             hhhHHHHhhcCceEEee-EEEEeeC-------cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhh
Q psy7674          72 NNYEKELEKNKIDYFNA-KAVFVDK-------HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDL  137 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~-~~~~~~~-------~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~  137 (164)
                      ..++++.+++.|+++.. .++.+.+       .++++ +|  ..+....+|+|||++|+-.++||.     +.+.-|..+
T Consensus       270 ~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHC  347 (520)
T COG3634         270 AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHC  347 (520)
T ss_pred             HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCC
Confidence            35788999999999876 4444432       34555 56  789999999999999999999997     234444443


Q ss_pred             ccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         138 FSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       138 ~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..-.-.+|+|+|||||++|+|+|--|
T Consensus       348 DGPLF~gK~VAVIGGGNSGvEAAIDL  373 (520)
T COG3634         348 DGPLFKGKRVAVIGGGNSGVEAAIDL  373 (520)
T ss_pred             CCcccCCceEEEECCCcchHHHHHhH
Confidence            33234568999999999999998655

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.39  E-value=2.8e-12  Score=105.96  Aligned_cols=87  Identities=24%  Similarity=0.289  Sum_probs=67.4

Q ss_pred             HHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCC-CCCccceechhhhccCcCCCCcEEEECC
Q psy7674          77 ELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNKDPGKVLLVGA  152 (164)
Q Consensus        77 ~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~-i~g~~~v~~~~~~~~~~~~~~~vvViGg  152 (164)
                      .++..+|+++.+++.+++++++.+   ++....+.||++|||||++|+.|+ ++....+++.++.+.....|++++||||
T Consensus       101 ~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~~~~~~~~~~~~~vvVIGg  180 (466)
T PRK07818        101 LMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYEEQILSRELPKSIVIAGA  180 (466)
T ss_pred             HHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEchHHHhccccCCCeEEEECC
Confidence            345568999999999999888777   332357999999999999998653 2211456777776555567899999999


Q ss_pred             cHHHHHhhccc
Q psy7674         153 SYIALECAGCD  163 (164)
Q Consensus       153 G~~g~E~A~~l  163 (164)
                      |++|+|+|..|
T Consensus       181 G~ig~E~A~~l  191 (466)
T PRK07818        181 GAIGMEFAYVL  191 (466)
T ss_pred             cHHHHHHHHHH
Confidence            99999999876

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.38  E-value=2.2e-12  Score=112.58  Aligned_cols=88  Identities=28%  Similarity=0.368  Sum_probs=67.9

Q ss_pred             hHHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceec---hhhhccC---c
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGIT---SDDLFSL---N  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~---~~~~~~~---~  141 (164)
                      ..+++++.||+++.+ +++.+|.  +.+.+ ++  ..+.||+||+|||++|+.|++||.  .++++   .+|+..+   .
T Consensus        60 ~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~  137 (785)
T TIGR02374        60 SKDWYEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA  137 (785)
T ss_pred             CHHHHHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh
Confidence            456788899999988 5777875  44555 44  679999999999999999999996  34543   3444332   2


Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++++|||||++|+|+|..|
T Consensus       138 ~~~k~vvVVGgG~~GlE~A~~L  159 (785)
T TIGR02374       138 QRFKKAAVIGGGLLGLEAAVGL  159 (785)
T ss_pred             hcCCeEEEECCCHHHHHHHHHH
Confidence            3468999999999999999876

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.36  E-value=9.2e-13  Score=106.18  Aligned_cols=93  Identities=23%  Similarity=0.379  Sum_probs=70.6

Q ss_pred             chhhHHHHhhcC-ceEEeeEEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-ccee---chhhhccCc--
Q psy7674          71 ENNYEKELEKNK-IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGI---TSDDLFSLN--  141 (164)
Q Consensus        71 ~~~~~~~l~~~g-v~~~~~~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~---~~~~~~~~~--  141 (164)
                      ...++.+++..+ ++|+.++++.+|  .++|.++. ...+.||+||+|+||++..+++||. ++.+   +.+|+.++.  
T Consensus        60 ~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~  138 (405)
T COG1252          60 AIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRH  138 (405)
T ss_pred             eccHHHHhcccCceEEEEEEEEEEcccCCEEEeCC-CccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHH
Confidence            345678888555 999999999987  46677633 2679999999999999999999997 6654   344543321  


Q ss_pred             ---------CCC-----CcEEEECCcHHHHHhhcccC
Q psy7674         142 ---------KDP-----GKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       142 ---------~~~-----~~vvViGgG~~g~E~A~~l~  164 (164)
                               +.+     .+++|+|||++|+|+|+.|+
T Consensus       139 l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~  175 (405)
T COG1252         139 LLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELA  175 (405)
T ss_pred             HHHHHHHhhccccccceeEEEEECCChhHHHHHHHHH
Confidence                     112     36999999999999999873

>KOG2495|consensus

Probab=99.35  E-value=1.7e-12  Score=103.82  Aligned_cols=127  Identities=19%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             CCcceEEeeceEec------------CCceEE-----Eec-----cCCcccccccch--hhHHHHhhc--CceEEeeEEE
Q psy7674          38 KTVPNIFIHGKHID------------NNSVVI-----FSK-----SWCPFCTKAKEN--NYEKELEKN--KIDYFNAKAV   91 (164)
Q Consensus        38 ~~vp~v~i~~~~ig------------~d~vvv-----~~~-----~~cp~~~~~~~~--~~~~~l~~~--gv~~~~~~~~   91 (164)
                      ..-|++.|-|.-++            ||.++|     |..     +.|.++...++.  ..+...+..  ++.|++.++.
T Consensus        53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~  132 (491)
T KOG2495|consen   53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT  132 (491)
T ss_pred             CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence            33567777664444            666665     222     223366665533  344444444  7888888888


Q ss_pred             EeeC--cEEEe---CC----eeEEEEeceEEEecCCCCCCCCCCCc-cceech---hhhccC-------------c----
Q psy7674          92 FVDK--HRVKF---AG----EERTVSAQNFIIAVGGRPTYPDIPGA-HLGITS---DDLFSL-------------N----  141 (164)
Q Consensus        92 ~~~~--~~v~v---~~----~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~---~~~~~~-------------~----  141 (164)
                      .+|+  +++.+   .+    .+..+.||+||+|+|+.++.+++||. ++....   .|+..+             .    
T Consensus       133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~  212 (491)
T KOG2495|consen  133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD  212 (491)
T ss_pred             eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence            8874  55665   11    12578999999999999999999998 554322   111111             0    


Q ss_pred             ---CCCCcEEEECCcHHHHHhhcccC
Q psy7674         142 ---KDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       142 ---~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                         +..-+++|||||++|+|+|+.|+
T Consensus       213 eerkRlLh~VVVGGGPTGVEFAaEL~  238 (491)
T KOG2495|consen  213 EERKRLLHFVVVGGGPTGVEFAAELA  238 (491)
T ss_pred             HHhhheEEEEEECCCCcceeehHHHH
Confidence               11248999999999999999874

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.35  E-value=1.2e-12  Score=110.46  Aligned_cols=139  Identities=24%  Similarity=0.269  Sum_probs=90.1

Q ss_pred             CChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhcCceEEee-EEEEeeCc--EE
Q psy7674          22 PNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKH--RV   98 (164)
Q Consensus        22 ~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~--~v   98 (164)
                      .-.+.+++.+. .......=++|=...+..|+.+.+-+--.-+.........-.++++++||+++.+ .++++|..  .+
T Consensus        14 ag~r~iEell~-~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V   92 (793)
T COG1251          14 AGHRTIEELLE-SAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVV   92 (793)
T ss_pred             chhhHHHHHHh-cCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceE
Confidence            33466666665 4344434344434456667775542211111122222223457889999999998 67788753  34


Q ss_pred             Ee-CCeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccC---cCCCCcEEEECCcHHHHHhhccc
Q psy7674          99 KF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSL---NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus        99 ~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .. .+  ..+.||+|++||||.|.+||+||.  +.++   +.+|+...   .+..++.+|||||..|+|+|..|
T Consensus        93 ~t~~g--~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L  164 (793)
T COG1251          93 TTDAG--RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGL  164 (793)
T ss_pred             EccCC--cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHH
Confidence            33 34  789999999999999999999997  4555   34444332   23456789999999999999876

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.35  E-value=2.9e-12  Score=104.70  Aligned_cols=90  Identities=24%  Similarity=0.269  Sum_probs=65.2

Q ss_pred             hHHHHhhcCceEEeeEEEEeeC--cEEEeC---------CeeEEEEeceEEEecCCCCCCCCCCCc-ccee---chhhhc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDK--HRVKFA---------GEERTVSAQNFIIAVGGRPTYPDIPGA-HLGI---TSDDLF  138 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~--~~v~v~---------~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~---~~~~~~  138 (164)
                      ++.+++..+++++.++++.+|.  +.+.+.         .++..+.||+||+|||++|..|++||. ++++   +.+++.
T Consensus        68 ~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~  147 (424)
T PTZ00318         68 VRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHAR  147 (424)
T ss_pred             HHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHH
Confidence            4566777899999999999874  556551         223579999999999999999999997 4433   222222


Q ss_pred             cCc--------------------CCCCcEEEECCcHHHHHhhccc
Q psy7674         139 SLN--------------------KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       139 ~~~--------------------~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+.                    ...++++|||||++|+|+|..|
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l  192 (424)
T PTZ00318        148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAEL  192 (424)
T ss_pred             HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHH
Confidence            110                    0124899999999999999876

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.34  E-value=7.6e-12  Score=103.10  Aligned_cols=84  Identities=38%  Similarity=0.559  Sum_probs=69.1

Q ss_pred             HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhhccCcCCCCcEEEE
Q psy7674          76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      ..++..+++++.+++.+++.+++.+++  ..+.||++|+|||++  .|++||.     ..++++++.+.+...+++++||
T Consensus       100 ~~~~~~~v~~~~g~~~~~~~~~v~v~~--~~~~~d~lIiATGs~--~p~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VI  175 (460)
T PRK06292        100 GLEKKPKIDKIKGTARFVDPNTVEVNG--ERIEAKNIVIATGSR--VPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVI  175 (460)
T ss_pred             HHHhhCCCEEEEEEEEEccCCEEEECc--EEEEeCEEEEeCCCC--CCCCCCCcccCCCcEECchHHhCccccCCeEEEE
Confidence            345667999999999888888887765  679999999999999  3444442     4567888888877888999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       176 GgG~~g~E~A~~l  188 (460)
T PRK06292        176 GGGVIGLELGQAL  188 (460)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.34  E-value=9.9e-12  Score=102.00  Aligned_cols=86  Identities=20%  Similarity=0.281  Sum_probs=61.0

Q ss_pred             HHhhcCceEEe-eEEEEeeC--cEEEe-CC---eeEEEEeceEEEecCCCCCCCCCCCccceech---hhhccC-----c
Q psy7674          77 ELEKNKIDYFN-AKAVFVDK--HRVKF-AG---EERTVSAQNFIIAVGGRPTYPDIPGAHLGITS---DDLFSL-----N  141 (164)
Q Consensus        77 ~l~~~gv~~~~-~~~~~~~~--~~v~v-~~---~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~---~~~~~~-----~  141 (164)
                      +.++.|++++. .++..+|.  +++.+ ++   +...+.||+||||||++|+.|++++ +++++.   +++..+     .
T Consensus        67 ~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~  145 (438)
T PRK13512         67 FYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFES-DITFTLRNLEDTDAIDQFIKA  145 (438)
T ss_pred             HHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCC-CCeEEecCHHHHHHHHHHHhh
Confidence            34567999976 47777774  55665 21   1225789999999999999988776 444443   232221     2


Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++++|||||++|+|+|..|
T Consensus       146 ~~~~~vvViGgG~ig~E~A~~l  167 (438)
T PRK13512        146 NQVDKALVVGAGYISLEVLENL  167 (438)
T ss_pred             cCCCEEEEECCCHHHHHHHHHH
Confidence            2478999999999999999876

>KOG1752|consensus

Probab=99.30  E-value=1.9e-12  Score=85.68  Aligned_cols=53  Identities=45%  Similarity=0.570  Sum_probs=49.2

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++.||...++++.++|+|.++++.++|++|.+++|++|+|++||+|+|||+.+
T Consensus        30 ~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~   82 (104)
T KOG1752|consen   30 AKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGAS   82 (104)
T ss_pred             HHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHH
Confidence            46688889999999999999999999999999999999999999999999543

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.24  E-value=3.2e-11  Score=98.52  Aligned_cols=88  Identities=23%  Similarity=0.358  Sum_probs=62.8

Q ss_pred             HHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEE--eceEEEecCCCCCCCCCCCc--cceechh---hhccC---
Q psy7674          76 KELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVS--AQNFIIAVGGRPTYPDIPGA--HLGITSD---DLFSL---  140 (164)
Q Consensus        76 ~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~--~d~liiAtGs~~~~p~i~g~--~~v~~~~---~~~~~---  140 (164)
                      .++++.|++++.+ ++..+|  .+++.+  +++...+.  ||+||+|||++|+.|++||.  +++++..   ++..+   
T Consensus        52 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~  131 (427)
T TIGR03385        52 VFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQY  131 (427)
T ss_pred             HHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHH
Confidence            4457889998755 677776  455655  22124567  99999999999999999985  4455432   22211   


Q ss_pred             --cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 --NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 --~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                        ...+++++|||||++|+|+|..|
T Consensus       132 l~~~~~~~vvViGgG~~g~e~A~~l  156 (427)
T TIGR03385       132 IDKNKVENVVIIGGGYIGIEMAEAL  156 (427)
T ss_pred             HhhcCCCeEEEECCCHHHHHHHHHH
Confidence              13468999999999999999876

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.20  E-value=3.9e-10  Score=94.44  Aligned_cols=90  Identities=19%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC----cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-cc----eechhhhccCc
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK----HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-HL----GITSDDLFSLN  141 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~----~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~----v~~~~~~~~~~  141 (164)
                      .+.+++++++++++.+ ++..++.    ..+.+ ++  ..+.||++|+|||++|+.|++||. ++    +..+.......
T Consensus       271 ~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~  348 (517)
T PRK15317        271 ALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPL  348 (517)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchh
Confidence            3566778889999876 5666643    23434 33  579999999999999999999986 21    22222111112


Q ss_pred             CCCCcEEEECCcHHHHHhhcccC
Q psy7674         142 KDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ..+++|+|||||++|+|+|..|+
T Consensus       349 ~~gk~VvVVGgG~~g~e~A~~L~  371 (517)
T PRK15317        349 FKGKRVAVIGGGNSGVEAAIDLA  371 (517)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH
Confidence            34689999999999999998763

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.18  E-value=8.4e-11  Score=96.44  Aligned_cols=89  Identities=25%  Similarity=0.394  Sum_probs=64.2

Q ss_pred             HHHHhhcCceEEee-EEEEee--CcEEEe-C-CeeEEEE--eceEEEecCCCCCCCCCCCc--cceech---hhhccCc-
Q psy7674          75 EKELEKNKIDYFNA-KAVFVD--KHRVKF-A-GEERTVS--AQNFIIAVGGRPTYPDIPGA--HLGITS---DDLFSLN-  141 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~-~~~~~~~--~d~liiAtGs~~~~p~i~g~--~~v~~~---~~~~~~~-  141 (164)
                      .+.+++.|++++.+ +++.+|  .+.+.+ + +++..+.  ||+||+|||++|+.|++||.  ++++++   ++...+. 
T Consensus        63 ~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~  142 (444)
T PRK09564         63 PEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKE  142 (444)
T ss_pred             HHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHH
Confidence            45677889998765 677776  455666 2 1123455  99999999999999999886  455543   3333332 


Q ss_pred             ----CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 ----KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ----~~~~~vvViGgG~~g~E~A~~l  163 (164)
                          ..+++++|||||++|+|+|..|
T Consensus       143 ~l~~~~~~~vvVvGgG~~g~e~A~~l  168 (444)
T PRK09564        143 LLKDEEIKNIVIIGAGFIGLEAVEAA  168 (444)
T ss_pred             HHhhcCCCEEEEECCCHHHHHHHHHH
Confidence                2468999999999999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=99.16  E-value=1.6e-10  Score=91.09  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=61.8

Q ss_pred             hHHHHhhcCceEEeeEEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCcc-----ceechhhhccCcCCCCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH-----LGITSDDLFSLNKDPGK  146 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~-----~v~~~~~~~~~~~~~~~  146 (164)
                      ++++...+++++..+++..++  .....++.+...+.||++|+|||++|+.|++||.+     .+..+.........+++
T Consensus        69 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~  148 (321)
T PRK10262         69 MHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQK  148 (321)
T ss_pred             HHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCE
Confidence            355566677788777665554  33344422114689999999999999999999851     22222222222345789


Q ss_pred             EEEECCcHHHHHhhcccC
Q psy7674         147 VLLVGASYIALECAGCDK  164 (164)
Q Consensus       147 vvViGgG~~g~E~A~~l~  164 (164)
                      ++|||+|++|+|+|..|+
T Consensus       149 vvVvGgG~~g~e~A~~l~  166 (321)
T PRK10262        149 VAVIGGGNTAVEEALYLS  166 (321)
T ss_pred             EEEECCCHHHHHHHHHHH
Confidence            999999999999998763

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.12  E-value=4.1e-10  Score=87.20  Aligned_cols=91  Identities=21%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             hhhHHHHhhcCceEEeeEEEEeeCc----EEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcC
Q psy7674          72 NNYEKELEKNKIDYFNAKAVFVDKH----RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNK  142 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~~~~~~~~~----~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~  142 (164)
                      ..+++.+++++++++..+++.++..    .+..++ ...+.||++|+|||++|+.|++||. .    .+..+........
T Consensus        61 ~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~-~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~  139 (300)
T TIGR01292        61 EKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGD-GKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFF  139 (300)
T ss_pred             HHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCC-CCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhc
Confidence            3456778888999988777777542    233322 2579999999999999999889985 1    1222211111112


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||+|++|+|+|..|
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l  160 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYL  160 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHH
Confidence            458999999999999999876

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.07  E-value=5.5e-10  Score=94.28  Aligned_cols=89  Identities=18%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC--c--EEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK--H--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNKD  143 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~--~--~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~~  143 (164)
                      .++.++++.+++++.+++..++.  +  .+...+  ..+.++++|+|||++|+.|++||. .    .+..+.........
T Consensus        65 ~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~--g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~  142 (555)
T TIGR03143        65 EMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTAR--GDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFT  142 (555)
T ss_pred             HHHHHHHHcCCEEeccEEEEEEecCCEEEEEecC--CEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcC
Confidence            44566777899998777777653  2  233333  358899999999999999999995 1    12222111111234


Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      +++++|||||++|+|+|..|
T Consensus       143 g~~VvVIGgG~~g~E~A~~L  162 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFL  162 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            68999999999999999876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.06  E-value=7e-10  Score=92.89  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=62.5

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--c--EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCc
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--H--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLN  141 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~--~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~  141 (164)
                      .+.+++++++++++.+ ++..++.  +  .+.+ ++  ..+.||++++|||++|+.|++||. +    .+..+.......
T Consensus       272 ~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~  349 (515)
T TIGR03140       272 NLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPF  349 (515)
T ss_pred             HHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhh
Confidence            3456777889999886 5555542  2  3333 34  579999999999999999999985 2    122221111112


Q ss_pred             CCCCcEEEECCcHHHHHhhcccC
Q psy7674         142 KDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ..+++|+|||||++|+|+|..|+
T Consensus       350 ~~~k~VvViGgG~~g~E~A~~L~  372 (515)
T TIGR03140       350 FKGKDVAVIGGGNSGIEAAIDLA  372 (515)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHH
Confidence            24689999999999999998763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.99  E-value=3.3e-10  Score=93.71  Aligned_cols=86  Identities=19%  Similarity=0.237  Sum_probs=61.1

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhccC-----------
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSL-----------  140 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~-----------  140 (164)
                      .+++++.|++++.++...   +.+.+++....+.||++++|||+ .|+.|++||.  +++++..+++..           
T Consensus       198 ~~~~~~~gv~i~~~~~v~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~  274 (464)
T PRK12831        198 IENIKKLGVKIETNVVVG---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEY  274 (464)
T ss_pred             HHHHHHcCCEEEcCCEEC---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccc
Confidence            356788899998876331   22333221124579999999999 6888999996  567776654421           


Q ss_pred             ---cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 ---NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 ---~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                         ...+++|+|||||++|+|+|..|
T Consensus       275 ~~~~~~gk~VvVIGgG~va~d~A~~l  300 (464)
T PRK12831        275 DTPIKVGKKVAVVGGGNVAMDAARTA  300 (464)
T ss_pred             cCcccCCCeEEEECCcHHHHHHHHHH
Confidence               13468999999999999999765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.94  E-value=5.6e-10  Score=91.98  Aligned_cols=84  Identities=18%  Similarity=0.221  Sum_probs=59.4

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhccC-----------
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSL-----------  140 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~-----------  140 (164)
                      .+.+++.|++++.+...   .+.+++++  ....||+|++|||+ +|+.|++||.  .++++..+.+..           
T Consensus       190 ~~~l~~~gv~~~~~~~v---~~~v~~~~--~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~  264 (449)
T TIGR01316       190 IKTLKKLGVTFRMNFLV---GKTATLEE--LFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPH  264 (449)
T ss_pred             HHHHHhCCcEEEeCCcc---CCcCCHHH--HHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence            35677889999887533   22333322  23469999999998 6888899986  456665544311           


Q ss_pred             ----cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 ----NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 ----~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                          ...+++|+|||||++|+|+|..|
T Consensus       265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l  291 (449)
T TIGR01316       265 ADTPVYAGKSVVVIGGGNTAVDSARTA  291 (449)
T ss_pred             cCCcccCCCeEEEECCCHHHHHHHHHH
Confidence                12358999999999999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=98.91  E-value=1.4e-09  Score=71.80  Aligned_cols=53  Identities=30%  Similarity=0.364  Sum_probs=48.1

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++-+|++.+++|++++||.++++.++++++.+++|++|+|+|||+|++||+.+
T Consensus        24 ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d   76 (99)
T TIGR02189        24 VKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE   76 (99)
T ss_pred             HHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence            35678899999999999999999999999999999999999999999998543

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK10824 glutaredoxin-4; Provisional

Probab=98.91  E-value=1.2e-09  Score=73.70  Aligned_cols=71  Identities=14%  Similarity=0.263  Sum_probs=53.2

Q ss_pred             ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhcC
Q psy7674           3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNK   82 (164)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~g   82 (164)
                      +-||++.+++|.+++++.+   .++|++|.+++|++|||+|||+|+|||+.+.++         ....+..+..+|+..+
T Consensus        37 k~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~---------~l~~~G~L~~lL~~~~  104 (115)
T PRK10824         37 VQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVDGELVGGCDIVI---------EMYQRGELQQLIKETA  104 (115)
T ss_pred             HHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHH---------HHHHCCCHHHHHHHHH
Confidence            4578888999999999876   679999999999999999999999999654331         0011233556666666


Q ss_pred             ceE
Q psy7674          83 IDY   85 (164)
Q Consensus        83 v~~   85 (164)
                      +.+
T Consensus       105 ~~~  107 (115)
T PRK10824        105 AKY  107 (115)
T ss_pred             hhh
Confidence            654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.90  E-value=3.2e-09  Score=84.80  Aligned_cols=89  Identities=24%  Similarity=0.260  Sum_probs=56.6

Q ss_pred             HHHHhhcCceEEeeEEEEee-C------cEE--E-eCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhc-c-
Q psy7674          75 EKELEKNKIDYFNAKAVFVD-K------HRV--K-FAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLF-S-  139 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~-~------~~v--~-v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~-~-  139 (164)
                      .+.+.+.+++++.++....+ .      ...  . +..+...+.||+||+|||+ .|+.|++||.  .++++..+.. . 
T Consensus        75 ~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~  154 (352)
T PRK12770         75 VKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRI  154 (352)
T ss_pred             HHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHh
Confidence            34566679999887544321 1      001  1 1111124789999999999 4778889985  4566543321 1 


Q ss_pred             ---------CcCC----CCcEEEECCcHHHHHhhccc
Q psy7674         140 ---------LNKD----PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       140 ---------~~~~----~~~vvViGgG~~g~E~A~~l  163 (164)
                               ....    .++++|||+|++|+|+|..|
T Consensus       155 ~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l  191 (352)
T PRK12770        155 RAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEA  191 (352)
T ss_pred             hhccccccccccccccCCCEEEEECCCHHHHHHHHHH
Confidence                     1111    47999999999999999765

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.6e-08  Score=75.61  Aligned_cols=145  Identities=17%  Similarity=0.102  Sum_probs=85.7

Q ss_pred             EEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCccccc-----ccchhhHHHHhhcCceEEee
Q psy7674          14 QVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTK-----AKENNYEKELEKNKIDYFNA   88 (164)
Q Consensus        14 ~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~-----~~~~~~~~~l~~~gv~~~~~   88 (164)
                      .++=|...|  .-+-+++........++.++-++..-++-...... +..|.+..     ......+++....++++...
T Consensus         5 DviIIG~GP--AGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~v-enypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~   81 (305)
T COG0492           5 DVIIIGGGP--AGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDV-ENYPGFPGGILGPELMEQMKEQAEKFGVEIVED   81 (305)
T ss_pred             eEEEECCCH--HHHHHHHHHHHcCCCcEEEEecCCcCCccccceee-cCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence            344444443  45555664322222345555444433333333323 33343333     12334566777789999887


Q ss_pred             EEEEeeCc--EEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhhccCcCCCCcEEEECCcHHHHHh
Q psy7674          89 KAVFVDKH--RVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDLFSLNKDPGKVLLVGASYIALEC  159 (164)
Q Consensus        89 ~~~~~~~~--~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~  159 (164)
                      ++..++..  ...+  +.  ..+.++++|||||+.++.|.+||.     +.+..|..+.. ....++|+|||||.+++|.
T Consensus        82 ~v~~v~~~~~~F~v~t~~--~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~  158 (305)
T COG0492          82 EVEKVELEGGPFKVKTDK--GTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEE  158 (305)
T ss_pred             EEEEEeecCceEEEEECC--CeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHH
Confidence            77776533  3333  33  349999999999999999988864     23333332222 2344799999999999999


Q ss_pred             hcccC
Q psy7674         160 AGCDK  164 (164)
Q Consensus       160 A~~l~  164 (164)
                      |.+|+
T Consensus       159 Al~L~  163 (305)
T COG0492         159 ALYLS  163 (305)
T ss_pred             HHHHH
Confidence            98874

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.86  E-value=1.6e-08  Score=74.18  Aligned_cols=91  Identities=25%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--C--cEEEeCCeeEEEEeceEEEecCC--CCCCCCCCC-c-cceechhhhccCcC-
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--K--HRVKFAGEERTVSAQNFIIAVGG--RPTYPDIPG-A-HLGITSDDLFSLNK-  142 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~--~~v~v~~~~~~~~~d~liiAtGs--~~~~p~i~g-~-~~v~~~~~~~~~~~-  142 (164)
                      .++...++.++++..+ +++.+.  .  -.+++... ..+.+|+||+|||.  .|+.|.++| . ...+.+.+...... 
T Consensus        87 yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~-~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~~~~~~  165 (203)
T PF13738_consen   87 YLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG-RTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWRDPEDF  165 (203)
T ss_dssp             HHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS--EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-STTGGC
T ss_pred             HHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec-ceeeeeeEEEeeeccCCCCccccccccccceEehhhcCChhhc
Confidence            3556667788887766 455553  2  23555331 57899999999995  888899999 4 44555555544333 


Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ..++|+|||+|.+|+++|..|+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~  187 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALA  187 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHT
T ss_pred             CCCcEEEEcChHHHHHHHHHHH
Confidence            4589999999999999998764

...

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.80  E-value=4.2e-09  Score=86.96  Aligned_cols=85  Identities=16%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhccC-------c--
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFSL-------N--  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~~-------~--  141 (164)
                      ..+++++.|++++.++...   +.+++++  ..+.||++++|||++ |+.+++||.  +++++..+.+..       .  
T Consensus       196 ~~~~l~~~gv~~~~~~~v~---~~v~~~~--~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~  270 (457)
T PRK11749        196 EVERLLKLGVEIRTNTEVG---RDITLDE--LRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDL  270 (457)
T ss_pred             HHHHHHHcCCEEEeCCEEC---CccCHHH--HHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccC
Confidence            3456778899998875431   2233322  237899999999996 677788886  456654433221       1  


Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++|+|||||++|+|+|..|
T Consensus       271 ~~g~~VvViGgG~~g~e~A~~l  292 (457)
T PRK11749        271 PVGKRVVVIGGGNTAMDAARTA  292 (457)
T ss_pred             CCCCeEEEECCCHHHHHHHHHH
Confidence            2468999999999999999765

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.79  E-value=1.9e-08  Score=89.38  Aligned_cols=108  Identities=11%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CCceEEEeccCCc-----ccccc----cc--hhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-C
Q psy7674          52 NNSVVIFSKSWCP-----FCTKA----KE--NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-R  119 (164)
Q Consensus        52 ~d~vvv~~~~~cp-----~~~~~----~~--~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~  119 (164)
                      +..++||.+...+     |..+.    +.  ....+.+++.|++|+.+....   +.++++. .....||++++|||+ .
T Consensus       329 G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---~dit~~~-l~~~~yDAV~LAtGA~~  404 (944)
T PRK12779        329 GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---KTATLED-LKAAGFWKIFVGTGAGL  404 (944)
T ss_pred             CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec---cEEeHHH-hccccCCEEEEeCCCCC
Confidence            6778888875422     33332    11  122356788899998875432   2344422 134579999999999 4


Q ss_pred             CCCCCCCCc--cceechhhhccC----------------cCCCCcEEEECCcHHHHHhhccc
Q psy7674         120 PTYPDIPGA--HLGITSDDLFSL----------------NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       120 ~~~p~i~g~--~~v~~~~~~~~~----------------~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |+.+++||.  +++++..+.+..                ...+++|+|||||++|+++|..+
T Consensus       405 pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta  466 (944)
T PRK12779        405 PTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTA  466 (944)
T ss_pred             CCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHH
Confidence            888899996  567766554421                01358999999999999999764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.78  E-value=6.1e-09  Score=90.84  Aligned_cols=85  Identities=21%  Similarity=0.296  Sum_probs=60.4

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCCCCc--cceechhhhccC-----------
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSL-----------  140 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~-----------  140 (164)
                      .+++++.|++++.+...   .+.++++.. ....||+++||||+ .|+.|++||.  +++++..+++..           
T Consensus       488 ~~~l~~~gv~~~~~~~v---~~~v~~~~l-~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~  563 (752)
T PRK12778        488 IENLKKLGVKFETDVIV---GKTITIEEL-EEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDS  563 (752)
T ss_pred             HHHHHHCCCEEECCCEE---CCcCCHHHH-hhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence            35677889999877533   223334221 34679999999999 5888999986  567776654321           


Q ss_pred             ---cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 ---NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 ---~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                         ...+++|+|||||++|+|+|..+
T Consensus       564 ~~~~~~gk~VvVIGgG~~a~d~A~~~  589 (752)
T PRK12778        564 DTPIKFGKKVAVVGGGNTAMDSARTA  589 (752)
T ss_pred             cCcccCCCcEEEECCcHHHHHHHHHH
Confidence               12358999999999999999765

>PHA03050 glutaredoxin; Provisional

Probab=98.76  E-value=6.9e-09  Score=69.49  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=45.8

Q ss_pred             cccccCCCCC---ccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDY---NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      ++-+|++.++   .|++++|+...++.++|+.|.+++|++|||++||+|++||+.
T Consensus        29 ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~   83 (108)
T PHA03050         29 ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGY   83 (108)
T ss_pred             HHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence            3557788888   799999998777889999999999999999999999999844

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.76  E-value=2.2e-08  Score=83.19  Aligned_cols=85  Identities=16%  Similarity=0.332  Sum_probs=58.0

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC-CCCCCCCc--cceechhhhcc----------C
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA--HLGITSDDLFS----------L  140 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~-~~p~i~g~--~~v~~~~~~~~----------~  140 (164)
                      +...++..+++|+.+...   .+.++++.  -...||++++|||+.+ +.+++||.  .++++..++..          +
T Consensus        85 ~~~~~~~~~v~~~~nv~v---g~dvtl~~--L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~  159 (491)
T PLN02852         85 FSRVATDDRVSFFGNVTL---GRDVSLSE--LRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHL  159 (491)
T ss_pred             HHHHHHHCCeEEEcCEEE---CccccHHH--HhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence            345566778888764322   12233322  2347999999999986 67789986  56776655531          1


Q ss_pred             ---cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 ---NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 ---~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                         ....++|+|||+|++|+|+|..|
T Consensus       160 ~~~~~~gk~VvVIGgGnvAlD~Ar~L  185 (491)
T PLN02852        160 PPDLKSSDTAVVLGQGNVALDCARIL  185 (491)
T ss_pred             hhcccCCCEEEEECCCHHHHHHHHHH
Confidence               12358999999999999999875

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.70  E-value=1e-07  Score=78.88  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=58.0

Q ss_pred             hhHHHHhhcCce--EEee-EEEEeeC--cE--EEe-CC--eeEEEEeceEEEecC--CCCCCCCCCCccc----eechhh
Q psy7674          73 NYEKELEKNKID--YFNA-KAVFVDK--HR--VKF-AG--EERTVSAQNFIIAVG--GRPTYPDIPGAHL----GITSDD  136 (164)
Q Consensus        73 ~~~~~l~~~gv~--~~~~-~~~~~~~--~~--v~v-~~--~~~~~~~d~liiAtG--s~~~~p~i~g~~~----v~~~~~  136 (164)
                      .++...+..++.  +..+ +++.++.  ..  +++ ++  ......||+||+|||  +.|++|++||.+.    ...+.+
T Consensus       116 YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~  195 (461)
T PLN02172        116 YLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHN  195 (461)
T ss_pred             HHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecc
Confidence            345555667776  5444 5666642  33  333 22  123567999999999  7899999998621    112222


Q ss_pred             hccCc-CCCCcEEEECCcHHHHHhhccc
Q psy7674         137 LFSLN-KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       137 ~~~~~-~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..... ...++|+|||+|.+|+|+|..|
T Consensus       196 yr~~~~~~gk~VvVVG~G~Sg~diA~~L  223 (461)
T PLN02172        196 YRVPDPFKNEVVVVIGNFASGADISRDI  223 (461)
T ss_pred             cCCccccCCCEEEEECCCcCHHHHHHHH
Confidence            22111 2468999999999999999876

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.67  E-value=4e-08  Score=87.24  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=55.5

Q ss_pred             HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC-CCCCCCCc-cceechhhhcc-------CcCCCCc
Q psy7674          76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA-HLGITSDDLFS-------LNKDPGK  146 (164)
Q Consensus        76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~-~~p~i~g~-~~v~~~~~~~~-------~~~~~~~  146 (164)
                      +++.+.|++++.+....     +.++. .....||+|+||||+++ +.++++|. +++++..+.+.       ....+++
T Consensus       597 e~l~~~GVe~~~gt~Vd-----i~le~-L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKr  670 (1019)
T PRK09853        597 EFVKAHGVKFEFGCSPD-----LTVEQ-LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKH  670 (1019)
T ss_pred             HHHHHcCCEEEeCceeE-----EEhhh-heeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCE
Confidence            56777899998875431     23322 13456999999999985 45568886 45655433221       1234689


Q ss_pred             EEEECCcHHHHHhhcc
Q psy7674         147 VLLVGASYIALECAGC  162 (164)
Q Consensus       147 vvViGgG~~g~E~A~~  162 (164)
                      |+|||||++|+|+|..
T Consensus       671 VVVIGGGnVAmD~Ar~  686 (1019)
T PRK09853        671 VVVVGGGNTAMDAARA  686 (1019)
T ss_pred             EEEECCChHHHHHHHH
Confidence            9999999999999864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.66  E-value=2.5e-08  Score=82.70  Aligned_cols=83  Identities=17%  Similarity=0.282  Sum_probs=56.5

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhc--------c----
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLF--------S----  139 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~--------~----  139 (164)
                      .+++.+.|++++.++....+   +..+.  ....||++++|||++ |+.+++||.  +++++..+.+        .    
T Consensus       200 ~~~~~~~gv~~~~~~~v~~~---~~~~~--~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~  274 (471)
T PRK12810        200 IELMEAEGIEFRTNVEVGKD---ITAEE--LLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETE  274 (471)
T ss_pred             HHHHHhCCcEEEeCCEECCc---CCHHH--HHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhcccccc
Confidence            45678889999887543221   11111  235799999999997 777889886  5565532211        1    


Q ss_pred             --CcCCCCcEEEECCcHHHHHhhcc
Q psy7674         140 --LNKDPGKVLLVGASYIALECAGC  162 (164)
Q Consensus       140 --~~~~~~~vvViGgG~~g~E~A~~  162 (164)
                        ....+++|+|||||++|+|+|..
T Consensus       275 ~~~~~~gk~VvVIGgG~~g~e~A~~  299 (471)
T PRK12810        275 PFISAKGKHVVVIGGGDTGMDCVGT  299 (471)
T ss_pred             ccccCCCCEEEEECCcHHHHHHHHH
Confidence              12346899999999999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=98.65  E-value=2.1e-08  Score=85.54  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=57.1

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhcc-C----------
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFS-L----------  140 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~-~----------  140 (164)
                      .+++++.|++++.++.+..+   +..+.  ....||++++|||++ |+.+++||.  .++++..+.+. +          
T Consensus       340 ~~~~~~~gv~~~~~~~v~~~---~~~~~--~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~  414 (604)
T PRK13984        340 IAFIEALGVKIHLNTRVGKD---IPLEE--LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPK  414 (604)
T ss_pred             HHHHHHCCcEEECCCEeCCc---CCHHH--HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCc
Confidence            35678889999877443211   11122  235799999999997 577789986  45555433321 1          


Q ss_pred             cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 ~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ...+++|+|||||++|+|+|..|
T Consensus       415 ~~~~k~VvVIGGG~~g~e~A~~l  437 (604)
T PRK13984        415 PKIPRSLVVIGGGNVAMDIARSM  437 (604)
T ss_pred             CCCCCcEEEECCchHHHHHHHHH
Confidence            12368999999999999999865

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=98.65  E-value=1.8e-09  Score=71.23  Aligned_cols=78  Identities=21%  Similarity=0.282  Sum_probs=52.4

Q ss_pred             EecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEE-eceEEEecCCCCCCCC--C
Q psy7674          49 HIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVS-AQNFIIAVGGRPTYPD--I  125 (164)
Q Consensus        49 ~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~-~d~liiAtGs~~~~p~--i  125 (164)
                      .|..+.++||+++|||||.+++     +.|++.++++          +.+.++....... .+.+.-.|| .+.+|.  +
T Consensus         4 ~i~~~~Vvvysk~~Cp~C~~ak-----~~L~~~~i~~----------~~vdid~~~~~~~~~~~l~~~tg-~~tvP~Vfi   67 (99)
T TIGR02189         4 MVSEKAVVIFSRSSCCMCHVVK-----RLLLTLGVNP----------AVHEIDKEPAGKDIENALSRLGC-SPAVPAVFV   67 (99)
T ss_pred             hhccCCEEEEECCCCHHHHHHH-----HHHHHcCCCC----------EEEEcCCCccHHHHHHHHHHhcC-CCCcCeEEE
Confidence            3667889999999999999999     8999999987          3344432101111 112333355 446777  3


Q ss_pred             CCccceechhhhccCcCC
Q psy7674         126 PGAHLGITSDDLFSLNKD  143 (164)
Q Consensus       126 ~g~~~v~~~~~~~~~~~~  143 (164)
                      .| +++++++++..+.+.
T Consensus        68 ~g-~~iGG~ddl~~l~~~   84 (99)
T TIGR02189        68 GG-KLVGGLENVMALHIS   84 (99)
T ss_pred             CC-EEEcCHHHHHHHHHc
Confidence            55 889999998877543

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.8e-08  Score=62.97  Aligned_cols=50  Identities=24%  Similarity=0.440  Sum_probs=44.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++-+|++.++.|..++++.++. .+.++++.+.+|++|||+|||+++++|+
T Consensus        17 ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg   66 (80)
T COG0695          17 AKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGG   66 (80)
T ss_pred             HHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence            4668899999999999999865 6889999988899999999999998885

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=98.63  E-value=3.1e-08  Score=65.06  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=43.1

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++-+|++.+++|..++|+.+   .+.+++|.+++|++++|++||+|++||+.+
T Consensus        33 ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~iGG~d   82 (97)
T TIGR00365        33 AVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFVGGCD   82 (97)
T ss_pred             HHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeChH
Confidence            45678899999999988755   788999999999999999999999998544

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.61  E-value=3.7e-08  Score=88.20  Aligned_cols=87  Identities=16%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhccC----------
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFSL----------  140 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~~----------  140 (164)
                      ..+++++.|++++.+....   +.++++.-.....||+|+||||+. |+.|++||.  ..+++..+.+..          
T Consensus       486 ~~~~l~~~Gv~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~  562 (1006)
T PRK12775        486 EVQRLVDIGVKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFP  562 (1006)
T ss_pred             HHHHHHHCCCEEEeCCccC---CccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccc
Confidence            3466788999998875431   122222100135699999999994 888999996  566666543311          


Q ss_pred             -----cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 -----NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 -----~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                           ...+++|+|||||++|+++|..+
T Consensus       563 ~~~~~~~~Gk~VvVIGgG~tA~D~A~~a  590 (1006)
T PRK12775        563 FLDTPISLGKSVVVIGAGNTAMDCLRVA  590 (1006)
T ss_pred             cccCCccCCCEEEEECCcHHHHHHHHHH
Confidence                 12468999999999999987643

>KOG1346|consensus

Probab=98.60  E-value=4.4e-08  Score=78.85  Aligned_cols=82  Identities=22%  Similarity=0.330  Sum_probs=59.6

Q ss_pred             hcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEecCCCCCCCC-CCCc-----c---ceechhhhccCcC---C
Q psy7674          80 KNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD-IPGA-----H---LGITSDDLFSLNK---D  143 (164)
Q Consensus        80 ~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~-i~g~-----~---~v~~~~~~~~~~~---~  143 (164)
                      .-||.++.| .++.+|  .+.|.+ ||  .++.||+++||||.+|+..+ +...     .   +.....|...+++   .
T Consensus       269 nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae  346 (659)
T KOG1346|consen  269 NGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE  346 (659)
T ss_pred             cCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh
Confidence            348888888 566676  355666 66  78999999999999998766 3222     1   2234555554443   3


Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++|.|||+|++|-|+|+.|
T Consensus       347 k~siTIiGnGflgSELacsl  366 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSL  366 (659)
T ss_pred             cceEEEEcCcchhhhHHHHH
Confidence            48899999999999999876

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=98.59  E-value=5.2e-08  Score=63.07  Aligned_cols=50  Identities=14%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++.+|++.+++|+.++++.+   .+++++|.+++|++++|++||+|++||+.+
T Consensus        29 ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~   78 (90)
T cd03028          29 VVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGCD   78 (90)
T ss_pred             HHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCHH
Confidence            34578889999999999866   789999999999999999999999998543

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>KOG1752|consensus

Probab=98.55  E-value=6.7e-09  Score=68.81  Aligned_cols=77  Identities=35%  Similarity=0.552  Sum_probs=52.6

Q ss_pred             ecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEE-eceEEEecCCCCCCCC--CC
Q psy7674          50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVS-AQNFIIAVGGRPTYPD--IP  126 (164)
Q Consensus        50 ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~-~d~liiAtGs~~~~p~--i~  126 (164)
                      +..+.++||||+|||||.+.|     .+|.+.++..          ..+++|....... -+++.-.||++ .+|.  |.
T Consensus        11 i~~~~VVifSKs~C~~c~~~k-----~ll~~~~v~~----------~vvELD~~~~g~eiq~~l~~~tg~~-tvP~vFI~   74 (104)
T KOG1752|consen   11 ISENPVVIFSKSSCPYCHRAK-----ELLSDLGVNP----------KVVELDEDEDGSEIQKALKKLTGQR-TVPNVFIG   74 (104)
T ss_pred             hhcCCEEEEECCcCchHHHHH-----HHHHhCCCCC----------EEEEccCCCCcHHHHHHHHHhcCCC-CCCEEEEC
Confidence            557789999999999999999     8888877765          3455532111111 13344457766 6777  45


Q ss_pred             CccceechhhhccCcCC
Q psy7674         127 GAHLGITSDDLFSLNKD  143 (164)
Q Consensus       127 g~~~v~~~~~~~~~~~~  143 (164)
                      | +++++++|+..++..
T Consensus        75 G-k~iGG~~dl~~lh~~   90 (104)
T KOG1752|consen   75 G-KFIGGASDLMALHKS   90 (104)
T ss_pred             C-EEEcCHHHHHHHHHc
Confidence            5 899999998877644

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.53  E-value=9.5e-08  Score=79.59  Aligned_cols=82  Identities=20%  Similarity=0.296  Sum_probs=55.3

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhc-------------
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLF-------------  138 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~-------------  138 (164)
                      .+++++.|++++.++....+   +..+.  ....||+|++|||++ |+.|++||.  +.+++.-+.+             
T Consensus       200 ~~~~~~~Gv~~~~~~~v~~~---~~~~~--~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~  274 (485)
T TIGR01317       200 IDLLSAEGIDFVTNTEIGVD---ISADE--LKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFK  274 (485)
T ss_pred             HHHHHhCCCEEECCCEeCCc---cCHHH--HHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhcccccc
Confidence            35678889999887543211   11111  235799999999998 888899986  4555432211             


Q ss_pred             ---cCcCCCCcEEEECCcHHHHHhhc
Q psy7674         139 ---SLNKDPGKVLLVGASYIALECAG  161 (164)
Q Consensus       139 ---~~~~~~~~vvViGgG~~g~E~A~  161 (164)
                         .....+++|+|||||++|+|+|.
T Consensus       275 ~~~~~~~~gk~VvViGgG~~g~d~a~  300 (485)
T TIGR01317       275 DIIFIKAKGKKVVVIGGGDTGADCVG  300 (485)
T ss_pred             ccccccCCCCEEEEECCcHHHHHHHH
Confidence               01124689999999999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PHA03050 glutaredoxin; Provisional

Probab=98.53  E-value=6.8e-09  Score=69.51  Aligned_cols=80  Identities=29%  Similarity=0.320  Sum_probs=52.6

Q ss_pred             ecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCe-eEEEEeceEEEecCCCCCCCCC--C
Q psy7674          50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGE-ERTVSAQNFIIAVGGRPTYPDI--P  126 (164)
Q Consensus        50 ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~-~~~~~~d~liiAtGs~~~~p~i--~  126 (164)
                      +..+.++||+++|||||.+++     +.|++.+++...       -..+.++.. ...-..+.+.-.||.+ .+|.+  .
T Consensus        10 i~~~~V~vys~~~CPyC~~ak-----~~L~~~~i~~~~-------~~~i~i~~~~~~~~~~~~l~~~tG~~-tVP~IfI~   76 (108)
T PHA03050         10 LANNKVTIFVKFTCPFCRNAL-----DILNKFSFKRGA-------YEIVDIKEFKPENELRDYFEQITGGR-TVPRIFFG   76 (108)
T ss_pred             hccCCEEEEECCCChHHHHHH-----HHHHHcCCCcCC-------cEEEECCCCCCCHHHHHHHHHHcCCC-CcCEEEEC
Confidence            556789999999999999999     889999983200       022333210 0111235555567754 67773  5


Q ss_pred             CccceechhhhccCcCC
Q psy7674         127 GAHLGITSDDLFSLNKD  143 (164)
Q Consensus       127 g~~~v~~~~~~~~~~~~  143 (164)
                      | +++++++|+..+.+.
T Consensus        77 g-~~iGG~ddl~~l~~~   92 (108)
T PHA03050         77 K-TSIGGYSDLLEIDNM   92 (108)
T ss_pred             C-EEEeChHHHHHHHHc
Confidence            5 889999998877644

>KOG0404|consensus

Probab=98.45  E-value=4.4e-07  Score=67.83  Aligned_cols=127  Identities=17%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             cCCCCcceEEeeceEec---CC-ceEEEeccCCccccc-----ccchhhHHHHhhcCceEEeeEEEEee--CcEEEe--C
Q psy7674          35 TGQKTVPNIFIHGKHID---NN-SVVIFSKSWCPFCTK-----AKENNYEKELEKNKIDYFNAKAVFVD--KHRVKF--A  101 (164)
Q Consensus        35 ~g~~~vp~v~i~~~~ig---~d-~vvv~~~~~cp~~~~-----~~~~~~~~~l~~~gv~~~~~~~~~~~--~~~v~v--~  101 (164)
                      ....--|.+|-+...-+   +. ..+--+-+..|....     ..+..++++..+.|.+++..++..+|  .+...+  +
T Consensus        28 araelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td  107 (322)
T KOG0404|consen   28 ARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTD  107 (322)
T ss_pred             hhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEec
Confidence            34455688876654222   22 222222234453222     23556778888899999998887765  233444  4


Q ss_pred             CeeEEEEeceEEEecCCCCCCCCCCCc-cc-ee--------chhhhccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         102 GEERTVSAQNFIIAVGGRPTYPDIPGA-HL-GI--------TSDDLFSLNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       102 ~~~~~~~~d~liiAtGs~~~~p~i~g~-~~-v~--------~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .  +.+.+|.+|+|||++.++.-+||. +. .+        -||.+..+ ...|..+|||||..++|-|.+|.
T Consensus       108 ~--~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapi-frnk~laVIGGGDsA~EEA~fLt  177 (322)
T KOG0404|consen  108 A--RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPI-FRNKPLAVIGGGDSAMEEALFLT  177 (322)
T ss_pred             C--CceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchh-hcCCeeEEEcCcHHHHHHHHHHH
Confidence            4  679999999999999998888886 32 11        12222211 12378999999999999998873

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.44  E-value=1.6e-07  Score=80.86  Aligned_cols=84  Identities=18%  Similarity=0.207  Sum_probs=56.3

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC-CCCCCCCc--cceechhhhcc------CcCCCC
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA--HLGITSDDLFS------LNKDPG  145 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~-~~p~i~g~--~~v~~~~~~~~------~~~~~~  145 (164)
                      .+.+.+.|++++.++....+   ++++.  ....||++++|||+++ +.+++||.  .++++..+.+.      ....++
T Consensus       250 ~~~l~~~Gv~i~~~~~v~~d---v~~~~--~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk  324 (652)
T PRK12814        250 IAPLRAMGAEFRFNTVFGRD---ITLEE--LQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGK  324 (652)
T ss_pred             HHHHHHcCCEEEeCCcccCc---cCHHH--HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCC
Confidence            35667889998876543211   22221  1235999999999986 46778886  45555444332      123468


Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      +|+|||||++|+|+|..+
T Consensus       325 ~VvVIGgG~~a~e~A~~l  342 (652)
T PRK12814        325 KVVVIGGGNTAIDAARTA  342 (652)
T ss_pred             eEEEECCCHHHHHHHHHH
Confidence            999999999999999764

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=98.42  E-value=2.9e-07  Score=59.81  Aligned_cols=48  Identities=15%  Similarity=0.101  Sum_probs=39.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC----CCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ----KTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~----~~vp~v~i~~~~ig~   52 (164)
                      |+.||+.+++.|+.++|+.+   ++.++.|.+.+|.    +++|++|++++|+|+
T Consensus        22 v~~lL~~k~I~f~eiDI~~d---~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg   73 (92)
T cd03030          22 VLGFLEAKKIEFEEVDISMN---EENRQWMRENVPNENGKPLPPQIFNGDEYCGD   73 (92)
T ss_pred             HHHHHHHCCCceEEEecCCC---HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeC
Confidence            45688999999999999876   6666677777664    999999999999984

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.41  E-value=1.5e-07  Score=56.06  Aligned_cols=46  Identities=28%  Similarity=0.450  Sum_probs=40.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEe
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI   50 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~i   50 (164)
                      ++.+|++.+++|++++|+.+   ++.++.+.+.+|..++|++|++|++|
T Consensus        15 ~~~~L~~~~i~y~~~dv~~~---~~~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen   15 AKEFLDEKGIPYEEVDVDED---EEAREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             HHHHHHHTTBEEEEEEGGGS---HHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             HHHHHHHcCCeeeEcccccc---hhHHHHHHHHcCCCccCEEEECCEEC
Confidence            45678899999999999999   58888888888999999999999976

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.7e-08  Score=63.08  Aligned_cols=72  Identities=31%  Similarity=0.551  Sum_probs=48.5

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC-CCcccee
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI-PGAHLGI  132 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i-~g~~~v~  132 (164)
                      .++||++++||||.++|     +.|.+.|+++          ..+.++........+.+..++|.+ .+|.| -+..+++
T Consensus         2 ~v~iyt~~~CPyC~~ak-----~~L~~~g~~~----------~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~~~ig   65 (80)
T COG0695           2 NVTIYTKPGCPYCKRAK-----RLLDRKGVDY----------EEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGGKHVG   65 (80)
T ss_pred             CEEEEECCCCchHHHHH-----HHHHHcCCCc----------EEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECCEEEe
Confidence            47899999999999999     8999999998          334553211123345555555655 56773 2326888


Q ss_pred             chhhhccCc
Q psy7674         133 TSDDLFSLN  141 (164)
Q Consensus       133 ~~~~~~~~~  141 (164)
                      +++++..+.
T Consensus        66 g~~d~~~~~   74 (80)
T COG0695          66 GCDDLDALE   74 (80)
T ss_pred             CcccHHHHH
Confidence            777766543

>PRK10824 glutaredoxin-4; Provisional

Probab=98.40  E-value=2.1e-08  Score=67.65  Aligned_cols=75  Identities=19%  Similarity=0.315  Sum_probs=53.3

Q ss_pred             ecCCceEEEecc-----CCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          50 IDNNSVVIFSKS-----WCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        50 ig~d~vvv~~~~-----~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      |..+.++||+|+     |||||.+++     +.|++.++++.          .+.++.+ .. ..+.+.--|| +|.+|.
T Consensus        12 I~~~~Vvvf~Kg~~~~p~Cpyc~~ak-----~lL~~~~i~~~----------~idi~~d-~~-~~~~l~~~sg-~~TVPQ   73 (115)
T PRK10824         12 IAENPILLYMKGSPKLPSCGFSAQAV-----QALSACGERFA----------YVDILQN-PD-IRAELPKYAN-WPTFPQ   73 (115)
T ss_pred             HhcCCEEEEECCCCCCCCCchHHHHH-----HHHHHcCCCce----------EEEecCC-HH-HHHHHHHHhC-CCCCCe
Confidence            667889999995     999999999     89999999873          3444221 11 2234444565 557887


Q ss_pred             --CCCccceechhhhccCcCC
Q psy7674         125 --IPGAHLGITSDDLFSLNKD  143 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~~~~  143 (164)
                        |.| +++++++++..+.+.
T Consensus        74 IFI~G-~~IGG~ddl~~l~~~   93 (115)
T PRK10824         74 LWVDG-ELVGGCDIVIEMYQR   93 (115)
T ss_pred             EEECC-EEEcChHHHHHHHHC
Confidence              456 899999998876543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.39  E-value=4.5e-07  Score=80.87  Aligned_cols=82  Identities=15%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc-cceechhhhcc-------CcCCCCc
Q psy7674          76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA-HLGITSDDLFS-------LNKDPGK  146 (164)
Q Consensus        76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~-~~v~~~~~~~~-------~~~~~~~  146 (164)
                      +++.+.||+++.+..     ..++++. .....||+|++|||+++. .++++|. +.+++..+.+.       ....+++
T Consensus       595 e~l~~~GVe~~~g~~-----~d~~ve~-l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~  668 (1012)
T TIGR03315       595 ELVKFHGVEFKYGCS-----PDLTVAE-LKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKH  668 (1012)
T ss_pred             HHHHhcCcEEEEecc-----cceEhhh-hhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCe
Confidence            566778999987632     1122322 134579999999999854 4568875 45555433321       1235799


Q ss_pred             EEEECCcHHHHHhhccc
Q psy7674         147 VLLVGASYIALECAGCD  163 (164)
Q Consensus       147 vvViGgG~~g~E~A~~l  163 (164)
                      |+|||||++|+|+|..+
T Consensus       669 VVVIGGGnvAmD~Ar~a  685 (1012)
T TIGR03315       669 VVVVGGGNTAMDAARAA  685 (1012)
T ss_pred             EEEECCCHHHHHHHHHH
Confidence            99999999999999653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.32  E-value=7.7e-07  Score=71.59  Aligned_cols=83  Identities=25%  Similarity=0.342  Sum_probs=57.2

Q ss_pred             hhcCceEEee-EEEEeeC--cEEEeCCeeEEEEeceEEEecCCCCCCCCCCCcccee---chhhhccCcC---CCCcEEE
Q psy7674          79 EKNKIDYFNA-KAVFVDK--HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGI---TSDDLFSLNK---DPGKVLL  149 (164)
Q Consensus        79 ~~~gv~~~~~-~~~~~~~--~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~---~~~~~~~~~~---~~~~vvV  149 (164)
                      .+.++++..+ +++.+|+  +++.+.+  ..+.||+|++|||++|+.++......++   +.+++..+..   ..++++|
T Consensus        64 ~~~~i~~~~~~~v~~id~~~~~v~~~~--g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  141 (415)
T COG0446          64 RATGIDVRTGTEVTSIDPENKVVLLDD--GEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVV  141 (415)
T ss_pred             HhhCCEEeeCCEEEEecCCCCEEEECC--CcccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEE
Confidence            3568888877 5677774  4555533  2789999999999999987611112232   3344433321   2489999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      +|+|++|+|+|..|
T Consensus       142 vG~G~~gle~A~~~  155 (415)
T COG0446         142 VGAGPIGLEAAEAA  155 (415)
T ss_pred             ECCcHHHHHHHHHH
Confidence            99999999999876

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.31  E-value=5.7e-07  Score=80.71  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=46.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCc--cceechhhhccC----c-CCCCcEEEECCcHHHHHhhccc
Q psy7674         106 TVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSL----N-KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       106 ~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+.||++|+|||++++.|++||.  ..++++..+..+    . ..+++++|||+|++|+|+|..|
T Consensus       272 ~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L  336 (985)
T TIGR01372       272 RIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADL  336 (985)
T ss_pred             EEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHH
Confidence            68999999999999999999986  566665443321    1 2358999999999999999876

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.30  E-value=7.2e-07  Score=78.95  Aligned_cols=56  Identities=16%  Similarity=0.220  Sum_probs=44.4

Q ss_pred             EEEeceEEEecCC-CCCCCCCCCc--cceechhhhccCc--------------CCCCcEEEECCcHHHHHhhc
Q psy7674         106 TVSAQNFIIAVGG-RPTYPDIPGA--HLGITSDDLFSLN--------------KDPGKVLLVGASYIALECAG  161 (164)
Q Consensus       106 ~~~~d~liiAtGs-~~~~p~i~g~--~~v~~~~~~~~~~--------------~~~~~vvViGgG~~g~E~A~  161 (164)
                      ...||++++|||+ +|+.+++||.  +.+++..+++...              ...++|+|||||++|+|+|.
T Consensus       495 ~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~Ar  567 (1028)
T PRK06567        495 DLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAAT  567 (1028)
T ss_pred             hcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHH
Confidence            4679999999999 7999999997  5777766633221              12478999999999999997

>PTZ00062 glutaredoxin; Provisional

Probab=98.30  E-value=4.7e-07  Score=67.14  Aligned_cols=52  Identities=12%  Similarity=0.252  Sum_probs=44.2

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceE
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVV   56 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vv   56 (164)
                      ++-+|++.+++|..++|+.+   .+.|+.|.+.+|++|+|++||+|++||+.+.+
T Consensus       134 ~k~~L~~~~i~y~~~DI~~d---~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l  185 (204)
T PTZ00062        134 VVNMLNSSGVKYETYNIFED---PDLREELKVYSNWPTYPQLYVNGELIGGHDII  185 (204)
T ss_pred             HHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHhCCCCCCeEEECCEEEcChHHH
Confidence            34578888999999988865   67899999999999999999999999966543

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=98.29  E-value=9.2e-07  Score=54.77  Aligned_cols=49  Identities=24%  Similarity=0.396  Sum_probs=42.3

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      ++.+|++.+++|+.++++..   .+.++.+.+++|..++|++|+++++||+-
T Consensus        17 a~~~L~~~gi~~~~~di~~~---~~~~~el~~~~g~~~vP~v~i~~~~iGg~   65 (73)
T cd03027          17 VRLFLREKGLPYVEINIDIF---PERKAELEERTGSSVVPQIFFNEKLVGGL   65 (73)
T ss_pred             HHHHHHHCCCceEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCH
Confidence            45678899999999999877   56778888899999999999999999953

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.26  E-value=1.5e-06  Score=54.88  Aligned_cols=51  Identities=51%  Similarity=0.713  Sum_probs=44.9

Q ss_pred             cccccCCCCCc--cEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYN--FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++  |++++++..++..++++++.+.+|..++|++|++|+++|+
T Consensus        15 ~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg   67 (84)
T TIGR02180        15 AKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGG   67 (84)
T ss_pred             HHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcC
Confidence            35667778888  9999999988889999999999999999999999998874

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.22  E-value=2.5e-06  Score=70.38  Aligned_cols=57  Identities=26%  Similarity=0.338  Sum_probs=43.8

Q ss_pred             EEeceEEEecC--CCCCCCCCCCcc----ceechhhhccC-cCCCCcEEEECCcHHHHHhhccc
Q psy7674         107 VSAQNFIIAVG--GRPTYPDIPGAH----LGITSDDLFSL-NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       107 ~~~d~liiAtG--s~~~~p~i~g~~----~v~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +.+|.||+|||  +.|.+|.++|.+    .++.+.+.... .-.+|+|+|||+|++|+++|..|
T Consensus       131 ~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l  194 (443)
T COG2072         131 LTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPEL  194 (443)
T ss_pred             EecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHH
Confidence            77999999999  578889999872    24444444333 33579999999999999998766

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=98.21  E-value=1.9e-06  Score=54.04  Aligned_cols=49  Identities=22%  Similarity=0.469  Sum_probs=41.3

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      ++.+|++.++.|+.++++..   .+.++.+.+++|+.++|++|++|+++|+-
T Consensus        15 a~~~L~~~~i~~~~~di~~~---~~~~~~~~~~~g~~~vP~i~i~g~~igg~   63 (79)
T TIGR02181        15 AKALLSSKGVTFTEIRVDGD---PALRDEMMQRSGRRTVPQIFIGDVHVGGC   63 (79)
T ss_pred             HHHHHHHcCCCcEEEEecCC---HHHHHHHHHHhCCCCcCEEEECCEEEcCh
Confidence            45678899999999999877   56677788889999999999999988843

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.20  E-value=9.7e-07  Score=64.49  Aligned_cols=76  Identities=30%  Similarity=0.515  Sum_probs=53.6

Q ss_pred             HHhhcCceEEe-eEEEEee--CcEE-----E----eCCeeEEEEeceEEEecCCCCCCCCCCCc------cceechhhhc
Q psy7674          77 ELEKNKIDYFN-AKAVFVD--KHRV-----K----FAGEERTVSAQNFIIAVGGRPTYPDIPGA------HLGITSDDLF  138 (164)
Q Consensus        77 ~l~~~gv~~~~-~~~~~~~--~~~v-----~----v~~~~~~~~~d~liiAtGs~~~~p~i~g~------~~v~~~~~~~  138 (164)
                      .++..+++++. .++..++  .+.+     .    ..++...+.||++|+|||++|+.|++||.      ..+.++++++
T Consensus        67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~  146 (201)
T PF07992_consen   67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL  146 (201)
T ss_dssp             HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred             ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence            34678999944 4666664  2321     1    13334789999999999999999999984      2345667777


Q ss_pred             cCcCCCCcEEEECC
Q psy7674         139 SLNKDPGKVLLVGA  152 (164)
Q Consensus       139 ~~~~~~~~vvViGg  152 (164)
                      .....+++++|||-
T Consensus       147 ~~~~~~~~v~VvG~  160 (201)
T PF07992_consen  147 ELLESPKRVAVVGT  160 (201)
T ss_dssp             THSSTTSEEEEEST
T ss_pred             cccccccccccccc
Confidence            66666779999994

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.19  E-value=2.2e-06  Score=53.87  Aligned_cols=51  Identities=43%  Similarity=0.552  Sum_probs=45.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.++.|++++++..++..+.++.+.+++|..++|++|++|+++|+
T Consensus        16 ~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg   66 (82)
T cd03419          16 AKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGG   66 (82)
T ss_pred             HHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcC
Confidence            456788889999999999998888889999999999999999999998874

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=98.16  E-value=1.6e-07  Score=61.70  Aligned_cols=75  Identities=21%  Similarity=0.326  Sum_probs=51.4

Q ss_pred             ecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          50 IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        50 ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +..+.++||++     +|||||.+++     +.|+++|+++.          .+.++.+ . -..+.+.--|| .+.+|.
T Consensus         9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak-----~lL~~~~i~~~----------~~di~~~-~-~~~~~l~~~tg-~~tvP~   70 (97)
T TIGR00365         9 IKENPVVLYMKGTPQFPQCGFSARAV-----QILKACGVPFA----------YVNVLED-P-EIRQGIKEYSN-WPTIPQ   70 (97)
T ss_pred             hccCCEEEEEccCCCCCCCchHHHHH-----HHHHHcCCCEE----------EEECCCC-H-HHHHHHHHHhC-CCCCCE
Confidence            55678999998     8999999999     89999999983          3444221 1 12233333355 446776


Q ss_pred             --CCCccceechhhhccCcCC
Q psy7674         125 --IPGAHLGITSDDLFSLNKD  143 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~~~~  143 (164)
                        +.| +.+++++++..+.+.
T Consensus        71 vfi~g-~~iGG~ddl~~l~~~   90 (97)
T TIGR00365        71 LYVKG-EFVGGCDIIMEMYQS   90 (97)
T ss_pred             EEECC-EEEeChHHHHHHHHC
Confidence              355 888999998876543

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=98.14  E-value=2.5e-06  Score=60.09  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC----CCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ----KTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~----~~vp~v~i~~~~ig~d~   54 (164)
                      ++.+|++.+++|..++|+.+   ++.+++|.+++|.    .++|+|||+|++||+.+
T Consensus        22 ak~iL~~~~V~~~e~DVs~~---~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~d   75 (147)
T cd03031          22 VRAILESFRVKFDERDVSMD---SGFREELRELLGAELKAVSLPRVFVDGRYLGGAE   75 (147)
T ss_pred             HHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHH
Confidence            56788999999999888876   6666667776665    89999999999999554

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.13  E-value=3.6e-06  Score=69.91  Aligned_cols=83  Identities=14%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceechhh--------hccCc--
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITSDD--------LFSLN--  141 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~~~--------~~~~~--  141 (164)
                      .+++++.|++++.++...   +.+.+++  ....||++++|||+.+. .+++||.  +++++.-+        +..+.  
T Consensus       198 ~~~~~~~Gv~~~~~~~v~---~~~~~~~--~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~  272 (467)
T TIGR01318       198 REIFTAMGIEFHLNCEVG---RDISLDD--LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPES  272 (467)
T ss_pred             HHHHHHCCCEEECCCEeC---CccCHHH--HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCcc
Confidence            466788899998764321   1122222  23479999999999875 4678886  45554321        11111  


Q ss_pred             -------CCCCcEEEECCcHHHHHhhcc
Q psy7674         142 -------KDPGKVLLVGASYIALECAGC  162 (164)
Q Consensus       142 -------~~~~~vvViGgG~~g~E~A~~  162 (164)
                             ...++++|||||++|+|+|..
T Consensus       273 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~  300 (467)
T TIGR01318       273 PEEPLIDVEGKRVVVLGGGDTAMDCVRT  300 (467)
T ss_pred             ccccccccCCCEEEEECCcHHHHHHHHH
Confidence                   135899999999999999865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK10638 glutaredoxin 3; Provisional

Probab=98.09  E-value=4.1e-06  Score=53.17  Aligned_cols=49  Identities=29%  Similarity=0.479  Sum_probs=41.1

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      +..+|++.++.|..++++..   .+.++.+.+++|..++|++|++|+++|+-
T Consensus        18 a~~~L~~~gi~y~~~dv~~~---~~~~~~l~~~~g~~~vP~i~~~g~~igG~   66 (83)
T PRK10638         18 AKALLNSKGVSFQEIPIDGD---AAKREEMIKRSGRTTVPQIFIDAQHIGGC   66 (83)
T ss_pred             HHHHHHHcCCCcEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCH
Confidence            34578889999999999876   55677788899999999999999988843

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.07  E-value=5e-06  Score=51.43  Aligned_cols=49  Identities=22%  Similarity=0.457  Sum_probs=38.9

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCC-CcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQK-TVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~-~vp~v~i~~~~ig~d   53 (164)
                      ++.+|++.+++|+.++|+.+   .+.++.+.+..|.. ++|++|++|+++|+-
T Consensus        16 ak~~L~~~~i~~~~i~i~~~---~~~~~~~~~~~~~~~~vP~v~i~g~~igg~   65 (75)
T cd03418          16 AKALLDKKGVDYEEIDVDGD---PALREEMINRSGGRRTVPQIFIGDVHIGGC   65 (75)
T ss_pred             HHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCccCEEEECCEEEeCh
Confidence            45678889999999999876   55555666667877 999999999988843

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.05  E-value=1.2e-05  Score=67.73  Aligned_cols=64  Identities=27%  Similarity=0.346  Sum_probs=41.1

Q ss_pred             CCeeEEEEeceEEEecCC--CCCCCC--CCCcc----ceechhhhccCc-CCCCcEEEECCcHHHHHhhcccC
Q psy7674         101 AGEERTVSAQNFIIAVGG--RPTYPD--IPGAH----LGITSDDLFSLN-KDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       101 ~~~~~~~~~d~liiAtGs--~~~~p~--i~g~~----~v~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ++..+...||++++|||-  .|.+|.  +||.+    .+..+.+-.... -..|+|+|||+|.+|+++|..|+
T Consensus       131 ~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~  203 (531)
T PF00743_consen  131 DGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELS  203 (531)
T ss_dssp             TTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHT
T ss_pred             CCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHH
Confidence            343456679999999995  567774  78862    344444433322 24689999999999999998763

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.01  E-value=4e-06  Score=66.94  Aligned_cols=62  Identities=27%  Similarity=0.350  Sum_probs=36.1

Q ss_pred             CeeEEEEeceEEEecCCCCCCCCC-C---CccceechhhhccC---cCCCCcEEEECCcHHHHHhhccc
Q psy7674         102 GEERTVSAQNFIIAVGGRPTYPDI-P---GAHLGITSDDLFSL---NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       102 ~~~~~~~~d~liiAtGs~~~~p~i-~---g~~~v~~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ++...+.++.||+|||.+|.+|.. .   +...++.+.+.+..   ....++|+|||||-+|.|++..|
T Consensus       141 g~~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L  209 (341)
T PF13434_consen  141 GDGETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDL  209 (341)
T ss_dssp             S-EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHH
T ss_pred             CCeeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHH
Confidence            445789999999999999999873 2   22456655544332   33568999999999999998765

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.99  E-value=4.7e-07  Score=58.58  Aligned_cols=75  Identities=24%  Similarity=0.365  Sum_probs=51.0

Q ss_pred             ecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          50 IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        50 ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +..+.++||++     +|||||..++     +.|++.+++|.          .+.++.+  ....+.+.--|| +..+|.
T Consensus         5 i~~~~vvvf~k~~~~~~~Cp~C~~ak-----~~L~~~~i~y~----------~idv~~~--~~~~~~l~~~~g-~~tvP~   66 (90)
T cd03028           5 IKENPVVLFMKGTPEEPRCGFSRKVV-----QILNQLGVDFG----------TFDILED--EEVRQGLKEYSN-WPTFPQ   66 (90)
T ss_pred             hccCCEEEEEcCCCCCCCCcHHHHHH-----HHHHHcCCCeE----------EEEcCCC--HHHHHHHHHHhC-CCCCCE
Confidence            55678999998     5999999999     89999999883          3444221  112333444456 445676


Q ss_pred             --CCCccceechhhhccCcCC
Q psy7674         125 --IPGAHLGITSDDLFSLNKD  143 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~~~~  143 (164)
                        +.| +.+++++++..+.+.
T Consensus        67 vfi~g-~~iGG~~~l~~l~~~   86 (90)
T cd03028          67 LYVNG-ELVGGCDIVKEMHES   86 (90)
T ss_pred             EEECC-EEEeCHHHHHHHHHc
Confidence              344 788899888776543

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.96  E-value=6e-07  Score=55.64  Aligned_cols=71  Identities=34%  Similarity=0.617  Sum_probs=46.5

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCccce
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLG  131 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v  131 (164)
                      .+++|++++||+|..++     .+|+++++++.          .+.++.+  .-..+.+.--+|.+..+|.  +.| +.+
T Consensus         1 ~i~ly~~~~Cp~C~~ak-----~~L~~~~i~~~----------~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g-~~i   62 (75)
T cd03418           1 KVEIYTKPNCPYCVRAK-----ALLDKKGVDYE----------EIDVDGD--PALREEMINRSGGRRTVPQIFIGD-VHI   62 (75)
T ss_pred             CEEEEeCCCChHHHHHH-----HHHHHCCCcEE----------EEECCCC--HHHHHHHHHHhCCCCccCEEEECC-EEE
Confidence            37899999999999999     88999999883          3444221  0111223333454435666  345 788


Q ss_pred             echhhhccCcC
Q psy7674         132 ITSDDLFSLNK  142 (164)
Q Consensus       132 ~~~~~~~~~~~  142 (164)
                      ++++++.++.+
T Consensus        63 gg~~~~~~~~~   73 (75)
T cd03418          63 GGCDDLYALER   73 (75)
T ss_pred             eChHHHHHHHh
Confidence            88888876543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.90  E-value=1.6e-06  Score=53.49  Aligned_cols=66  Identities=35%  Similarity=0.601  Sum_probs=42.3

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC--CCccce
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI--PGAHLG  131 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i--~g~~~v  131 (164)
                      .++||+++|||||..++     +.|++.|+++.          .+.++.+  . ..+.+...+|. ..+|.+  .| +.+
T Consensus         2 ~v~lys~~~Cp~C~~ak-----~~L~~~~i~~~----------~~~v~~~--~-~~~~~~~~~g~-~~vP~ifi~g-~~i   61 (72)
T cd03029           2 SVSLFTKPGCPFCARAK-----AALQENGISYE----------EIPLGKD--I-TGRSLRAVTGA-MTVPQVFIDG-ELI   61 (72)
T ss_pred             eEEEEECCCCHHHHHHH-----HHHHHcCCCcE----------EEECCCC--h-hHHHHHHHhCC-CCcCeEEECC-EEE
Confidence            58999999999999999     88999999983          3444321  1 12222222443 356663  34 667


Q ss_pred             echhhhcc
Q psy7674         132 ITSDDLFS  139 (164)
Q Consensus       132 ~~~~~~~~  139 (164)
                      ++++++..
T Consensus        62 gg~~~l~~   69 (72)
T cd03029          62 GGSDDLEK   69 (72)
T ss_pred             eCHHHHHH
Confidence            77776643

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.89  E-value=1.1e-05  Score=50.78  Aligned_cols=48  Identities=31%  Similarity=0.523  Sum_probs=37.6

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      ++.+|++.+++|+.++++..++.   + .+.+++|..++|++|++|+++++-
T Consensus        24 ak~~L~~~gi~y~~idi~~~~~~---~-~~~~~~g~~~vP~i~i~g~~igG~   71 (79)
T TIGR02190        24 AKATLKEKGYDFEEIPLGNDARG---R-SLRAVTGATTVPQVFIGGKLIGGS   71 (79)
T ss_pred             HHHHHHHcCCCcEEEECCCChHH---H-HHHHHHCCCCcCeEEECCEEEcCH
Confidence            45678899999999999876433   2 345568999999999999988743

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.88  E-value=1.6e-05  Score=48.96  Aligned_cols=47  Identities=26%  Similarity=0.363  Sum_probs=37.3

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++-+|++.+++|+.++++..++    .+.+.+++|..++|++|++|+++|+
T Consensus        17 ak~~L~~~~i~~~~~~v~~~~~----~~~~~~~~g~~~vP~ifi~g~~igg   63 (72)
T cd03029          17 AKAALQENGISYEEIPLGKDIT----GRSLRAVTGAMTVPQVFIDGELIGG   63 (72)
T ss_pred             HHHHHHHcCCCcEEEECCCChh----HHHHHHHhCCCCcCeEEECCEEEeC
Confidence            3457788899999999987642    2356667899999999999998874

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.87  E-value=1.7e-06  Score=53.57  Aligned_cols=69  Identities=22%  Similarity=0.268  Sum_probs=46.5

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCccce
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLG  131 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v  131 (164)
                      ++++|++++||+|.+++     .+|++.|+++.          .+.++.  .....+.+.-.+|. ..+|.  +.| +.+
T Consensus         2 ~v~ly~~~~C~~C~ka~-----~~L~~~gi~~~----------~~di~~--~~~~~~el~~~~g~-~~vP~v~i~~-~~i   62 (73)
T cd03027           2 RVTIYSRLGCEDCTAVR-----LFLREKGLPYV----------EINIDI--FPERKAELEERTGS-SVVPQIFFNE-KLV   62 (73)
T ss_pred             EEEEEecCCChhHHHHH-----HHHHHCCCceE----------EEECCC--CHHHHHHHHHHhCC-CCcCEEEECC-EEE
Confidence            57899999999999999     89999999983          344422  11122233333554 34565  355 888


Q ss_pred             echhhhccCc
Q psy7674         132 ITSDDLFSLN  141 (164)
Q Consensus       132 ~~~~~~~~~~  141 (164)
                      ++.+++.++.
T Consensus        63 Gg~~~~~~~~   72 (73)
T cd03027          63 GGLTDLKSLE   72 (73)
T ss_pred             eCHHHHHhhc
Confidence            8999887654

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.86  E-value=3.3e-05  Score=66.59  Aligned_cols=83  Identities=18%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceech--------hhhccCc--
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITS--------DDLFSLN--  141 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~--------~~~~~~~--  141 (164)
                      .+++++.|++++.+....   +.++++.  ....||++++|||+.+. .+++||.  ..+++.        .++..+.  
T Consensus       367 ~~~~~~~Gv~~~~~~~v~---~~~~~~~--l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~  441 (639)
T PRK12809        367 REIFTAMGIDFHLNCEIG---RDITFSD--LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPES  441 (639)
T ss_pred             HHHHHHCCeEEEcCCccC---CcCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccc
Confidence            466788899998764321   1122222  23579999999999753 5668875  344432        1222111  


Q ss_pred             -------CCCCcEEEECCcHHHHHhhcc
Q psy7674         142 -------KDPGKVLLVGASYIALECAGC  162 (164)
Q Consensus       142 -------~~~~~vvViGgG~~g~E~A~~  162 (164)
                             ...++++|||||++|+++|..
T Consensus       442 ~~~~~~~~~gk~vvViGgG~~a~d~a~~  469 (639)
T PRK12809        442 EEYPLTDVEGKRVVVLGGGDTTMDCLRT  469 (639)
T ss_pred             cccccccCCCCeEEEECCcHHHHHHHHH
Confidence                   135899999999999998854

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.85  E-value=1e-06  Score=55.34  Aligned_cols=70  Identities=29%  Similarity=0.627  Sum_probs=45.7

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCcccee
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLGI  132 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v~  132 (164)
                      ++||++++||+|..++     .+|+++|+++.          .+.++.+  ....+.+.-.+| ...+|.  +.| +.++
T Consensus         1 v~ly~~~~Cp~C~~a~-----~~L~~~~i~~~----------~~di~~~--~~~~~~~~~~~g-~~~vP~i~i~g-~~ig   61 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAK-----ALLSSKGVTFT----------EIRVDGD--PALRDEMMQRSG-RRTVPQIFIGD-VHVG   61 (79)
T ss_pred             CEEEecCCChhHHHHH-----HHHHHcCCCcE----------EEEecCC--HHHHHHHHHHhC-CCCcCEEEECC-EEEc
Confidence            5789999999999999     88999999873          3444221  111122222355 455666  344 7788


Q ss_pred             chhhhccCcCC
Q psy7674         133 TSDDLFSLNKD  143 (164)
Q Consensus       133 ~~~~~~~~~~~  143 (164)
                      +++++.++.+.
T Consensus        62 g~~~~~~~~~~   72 (79)
T TIGR02181        62 GCDDLYALDRE   72 (79)
T ss_pred             ChHHHHHHHHc
Confidence            88888766543

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.75  E-value=3.3e-05  Score=66.73  Aligned_cols=83  Identities=13%  Similarity=0.169  Sum_probs=51.8

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceechh--------hhccC---
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITSD--------DLFSL---  140 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~~--------~~~~~---  140 (164)
                      .+++++.|++++.++....   .+++..  ....||++++|||+.+. .+++||.  ..+++.-        .+..+   
T Consensus       384 ~~~~~~~Gv~~~~~~~v~~---~i~~~~--~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~  458 (654)
T PRK12769        384 REIFSAMGIEFELNCEVGK---DISLES--LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEEL  458 (654)
T ss_pred             HHHHHHCCeEEECCCEeCC---cCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccc
Confidence            4567788999887643211   122211  12479999999999654 5677775  3444321        11111   


Q ss_pred             ------cCCCCcEEEECCcHHHHHhhcc
Q psy7674         141 ------NKDPGKVLLVGASYIALECAGC  162 (164)
Q Consensus       141 ------~~~~~~vvViGgG~~g~E~A~~  162 (164)
                            ....++|+|||||++|+|+|..
T Consensus       459 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~  486 (654)
T PRK12769        459 PEEPFINTAGLNVVVLGGGDTAMDCVRT  486 (654)
T ss_pred             cccccccCCCCeEEEECCcHHHHHHHHH
Confidence                  1135799999999999999864

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.74  E-value=4.2e-05  Score=46.18  Aligned_cols=48  Identities=25%  Similarity=0.405  Sum_probs=39.5

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      +..+|++.+++|..++++..   .+.++.+.+++|..++|++|++++++++
T Consensus        16 ~~~~L~~~~i~~~~~di~~~---~~~~~~l~~~~~~~~~P~~~~~~~~igg   63 (72)
T cd02066          16 AKRLLESLGIEFEEIDILED---GELREELKELSGWPTVPQIFINGEFIGG   63 (72)
T ss_pred             HHHHHHHcCCcEEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEec
Confidence            45678888888888888766   4477888888999999999999998874

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.72  E-value=4.8e-05  Score=48.39  Aligned_cols=41  Identities=32%  Similarity=0.671  Sum_probs=29.8

Q ss_pred             CCCccEEEEecCCCChhHHHHHHHhhcCC--CCcceEEeeceEecC
Q psy7674           9 PDYNFQVVELDKLPNGAQIQTALFERTGQ--KTVPNIFIHGKHIDN   52 (164)
Q Consensus         9 ~~~~~~~~~i~~~~~~~~~~~~l~~~~g~--~~vp~v~i~~~~ig~   52 (164)
                      .++.+..++++..  +.+ ++.+.+++|+  .++|++||+|+++|+
T Consensus        29 ~~i~~~~idi~~~--~~~-~~el~~~~~~~~~~vP~ifi~g~~igg   71 (85)
T PRK11200         29 DDFDYRYVDIHAE--GIS-KADLEKTVGKPVETVPQIFVDQKHIGG   71 (85)
T ss_pred             cCCcEEEEECCCC--hHH-HHHHHHHHCCCCCcCCEEEECCEEEcC
Confidence            5777777777654  333 3446667776  899999999998873

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.67  E-value=4.3e-06  Score=53.55  Aligned_cols=74  Identities=28%  Similarity=0.397  Sum_probs=41.8

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCC--CCccce
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDI--PGAHLG  131 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i--~g~~~v  131 (164)
                      ++||+++|||||..++     +.|++.+++.- +    +.-..+.++.+  ......+.-.+|. ...+|.+  .| +.+
T Consensus         2 V~vys~~~Cp~C~~ak-----~~L~~~~~~~~-~----i~~~~idi~~~--~~~~~~l~~~~g~~~~tVP~ifi~g-~~i   68 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAK-----QLAEKLAIERA-D----FEFRYIDIHAE--GISKADLEKTVGKPVETVPQIFVDE-KHV   68 (86)
T ss_pred             EEEEeCCCCccHHHHH-----HHHHHhCcccC-C----CcEEEEECCCC--HHHHHHHHHHhCCCCCCcCeEEECC-EEe
Confidence            6899999999999999     78887754320 0    00022333211  1011123334553 1346663  44 788


Q ss_pred             echhhhccCc
Q psy7674         132 ITSDDLFSLN  141 (164)
Q Consensus       132 ~~~~~~~~~~  141 (164)
                      ++++|+.++.
T Consensus        69 gG~~dl~~~~   78 (86)
T TIGR02183        69 GGCTDFEQLV   78 (86)
T ss_pred             cCHHHHHHHH
Confidence            8888887654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK10638 glutaredoxin 3; Provisional

Probab=97.65  E-value=4.1e-06  Score=53.19  Aligned_cols=71  Identities=28%  Similarity=0.547  Sum_probs=46.9

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC--CCccce
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI--PGAHLG  131 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i--~g~~~v  131 (164)
                      .+++|+++|||||.+++     ..|++.|+++.          .+.++.. .... +.+.--+|. ..+|.+  .| +.+
T Consensus         3 ~v~ly~~~~Cp~C~~a~-----~~L~~~gi~y~----------~~dv~~~-~~~~-~~l~~~~g~-~~vP~i~~~g-~~i   63 (83)
T PRK10638          3 NVEIYTKATCPFCHRAK-----ALLNSKGVSFQ----------EIPIDGD-AAKR-EEMIKRSGR-TTVPQIFIDA-QHI   63 (83)
T ss_pred             cEEEEECCCChhHHHHH-----HHHHHcCCCcE----------EEECCCC-HHHH-HHHHHHhCC-CCcCEEEECC-EEE
Confidence            58899999999999999     89999999983          3444321 1111 223333454 356664  44 788


Q ss_pred             echhhhccCcCC
Q psy7674         132 ITSDDLFSLNKD  143 (164)
Q Consensus       132 ~~~~~~~~~~~~  143 (164)
                      ++++++..+...
T Consensus        64 gG~~~~~~~~~~   75 (83)
T PRK10638         64 GGCDDLYALDAR   75 (83)
T ss_pred             eCHHHHHHHHHc
Confidence            888888766543

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.64  E-value=6.7e-05  Score=47.98  Aligned_cols=40  Identities=28%  Similarity=0.643  Sum_probs=27.3

Q ss_pred             CccEEEEecCCCChhHHHHHHHhhcCC--CCcceEEeeceEecCC
Q psy7674          11 YNFQVVELDKLPNGAQIQTALFERTGQ--KTVPNIFIHGKHIDNN   53 (164)
Q Consensus        11 ~~~~~~~i~~~~~~~~~~~~l~~~~g~--~~vp~v~i~~~~ig~d   53 (164)
                      +.|..++++  .++... +.+.+++|+  ++||++|++++++|+.
T Consensus        30 i~~~~idi~--~~~~~~-~~l~~~~g~~~~tVP~ifi~g~~igG~   71 (86)
T TIGR02183        30 FEFRYIDIH--AEGISK-ADLEKTVGKPVETVPQIFVDEKHVGGC   71 (86)
T ss_pred             CcEEEEECC--CCHHHH-HHHHHHhCCCCCCcCeEEECCEEecCH
Confidence            445555554  444443 447777887  8999999999988854

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=2.7e-05  Score=50.66  Aligned_cols=47  Identities=19%  Similarity=0.393  Sum_probs=40.3

Q ss_pred             CCCC-CccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceE
Q psy7674           7 APPD-YNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVV   56 (164)
Q Consensus         7 ~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vv   56 (164)
                      ...| ++|.+++|=.+   +++|+.|.+-+...|.|+.+|+|++||+.+++
T Consensus        41 ~~~g~v~~~~vnVL~d---~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv   88 (105)
T COG0278          41 SACGVVDFAYVDVLQD---PEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIV   88 (105)
T ss_pred             HHcCCcceeEEeeccC---HHHHhccHhhcCCCCCceeeECCEEeccHHHH
Confidence            3445 77777777776   89999999999999999999999999988866

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=97.64  E-value=3.7e-05  Score=62.94  Aligned_cols=52  Identities=25%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHH-----HHhhcCCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTA-----LFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      ++.+|++.|++|++++|+.++...++++.     |.+.+|+++||+|||++++||+-
T Consensus        18 aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf   74 (410)
T PRK12759         18 AKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY   74 (410)
T ss_pred             HHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence            46789999999999999977655555444     33457999999999999988833

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.57  E-value=4.9e-05  Score=47.76  Aligned_cols=68  Identities=34%  Similarity=0.587  Sum_probs=44.4

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCcc
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAH  129 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~  129 (164)
                      .+.+++|+++|||||.+++     ..|++.|+++.          .+.++.+   .....+...+|. ..+|.  +.| +
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak-----~~L~~~gi~y~----------~idi~~~---~~~~~~~~~~g~-~~vP~i~i~g-~   66 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAK-----ATLKEKGYDFE----------EIPLGND---ARGRSLRAVTGA-TTVPQVFIGG-K   66 (79)
T ss_pred             CCCEEEEECCCCHhHHHHH-----HHHHHcCCCcE----------EEECCCC---hHHHHHHHHHCC-CCcCeEEECC-E
Confidence            5679999999999999999     88999999983          3444321   011122223553 34666  344 6


Q ss_pred             ceechhhhcc
Q psy7674         130 LGITSDDLFS  139 (164)
Q Consensus       130 ~v~~~~~~~~  139 (164)
                      .+++++++..
T Consensus        67 ~igG~~~l~~   76 (79)
T TIGR02190        67 LIGGSDELEA   76 (79)
T ss_pred             EEcCHHHHHH
Confidence            7777777653

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.55  E-value=6.4e-06  Score=51.92  Aligned_cols=71  Identities=35%  Similarity=0.563  Sum_probs=41.7

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCce--EEeeEEEEeeCcEEEeCCee-EEEEeceEEEecCCCCCCCCC--CCcc
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKID--YFNAKAVFVDKHRVKFAGEE-RTVSAQNFIIAVGGRPTYPDI--PGAH  129 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~--~~~~~~~~~~~~~v~v~~~~-~~~~~d~liiAtGs~~~~p~i--~g~~  129 (164)
                      +++|+++|||+|...+     ..|.+.+++  +          ..+.++... .....+++.--+| .+.+|.+  .| +
T Consensus         1 V~~f~~~~Cp~C~~~~-----~~L~~~~i~~~~----------~~~~v~~~~~~~~~~~~l~~~~g-~~~vP~v~i~g-~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAK-----EILAKLNVKPAY----------EVVELDQLSNGSEIQDYLEEITG-QRTVPNIFING-K   63 (84)
T ss_pred             CEEEECCCChhHHHHH-----HHHHHcCCCCCC----------EEEEeeCCCChHHHHHHHHHHhC-CCCCCeEEECC-E
Confidence            5789999999999999     888888866  3          122221100 0011122222234 4456663  44 6


Q ss_pred             ceechhhhccCcC
Q psy7674         130 LGITSDDLFSLNK  142 (164)
Q Consensus       130 ~v~~~~~~~~~~~  142 (164)
                      .+.+++++.++.+
T Consensus        64 ~igg~~~~~~~~~   76 (84)
T TIGR02180        64 FIGGCSDLLALYK   76 (84)
T ss_pred             EEcCHHHHHHHHH
Confidence            7778888776544

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PTZ00062 glutaredoxin; Provisional

Probab=97.46  E-value=1.3e-05  Score=59.46  Aligned_cols=101  Identities=18%  Similarity=0.316  Sum_probs=63.2

Q ss_pred             ChhHHHHHHHhhcCCCCcce--EEeeceEecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeC
Q psy7674          23 NGAQIQTALFERTGQKTVPN--IFIHGKHIDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDK   95 (164)
Q Consensus        23 ~~~~~~~~l~~~~g~~~vp~--v~i~~~~ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~   95 (164)
                      +.+++...+.+..+......  -++. +.|....+++|+|     ++||||+..+     +.|++.+|++.         
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~li~~~~Vvvf~Kg~~~~p~C~~C~~~k-----~~L~~~~i~y~---------  146 (204)
T PTZ00062         82 NTSTLVSFIRGWAQKGSSEDTVEKIE-RLIRNHKILLFMKGSKTFPFCRFSNAVV-----NMLNSSGVKYE---------  146 (204)
T ss_pred             CHHHHHHHHHHHcCCCCHHHHHHHHH-HHHhcCCEEEEEccCCCCCCChhHHHHH-----HHHHHcCCCEE---------
Confidence            45666666666544333211  1222 2366899999999     5899999999     89999999983         


Q ss_pred             cEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCccceechhhhccCcCC
Q psy7674          96 HRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD  143 (164)
Q Consensus        96 ~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v~~~~~~~~~~~~  143 (164)
                       .+.++.+ ... .+.+.--+| .+.+|.  |.| +++++++++..+.+.
T Consensus       147 -~~DI~~d-~~~-~~~l~~~sg-~~TvPqVfI~G-~~IGG~d~l~~l~~~  191 (204)
T PTZ00062        147 -TYNIFED-PDL-REELKVYSN-WPTYPQLYVNG-ELIGGHDIIKELYES  191 (204)
T ss_pred             -EEEcCCC-HHH-HHHHHHHhC-CCCCCeEEECC-EEEcChHHHHHHHHc
Confidence             3444221 111 223333355 456777  455 889999988876543

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.44  E-value=0.00012  Score=45.02  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=35.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece-Eec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK-HID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~-~ig   51 (164)
                      ++.+|++.++.|+.++|+.+   .+.++.+.+. |..++|.++++|. +++
T Consensus        15 ak~~L~~~~i~~~~~di~~~---~~~~~~~~~~-g~~~vP~v~~~g~~~~~   61 (72)
T TIGR02194        15 TKKALEEHGIAFEEINIDEQ---PEAIDYVKAQ-GFRQVPVIVADGDLSWS   61 (72)
T ss_pred             HHHHHHHCCCceEEEECCCC---HHHHHHHHHc-CCcccCEEEECCCcEEe
Confidence            45678899999999999877   4556666654 9999999999774 444

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG1399|consensus

Probab=97.29  E-value=0.00042  Score=57.31  Aligned_cols=58  Identities=24%  Similarity=0.285  Sum_probs=40.5

Q ss_pred             EEEEeceEEEecCCC--CCCCCCCCc--c----ceechhhhccCc-CCCCcEEEECCcHHHHHhhcc
Q psy7674         105 RTVSAQNFIIAVGGR--PTYPDIPGA--H----LGITSDDLFSLN-KDPGKVLLVGASYIALECAGC  162 (164)
Q Consensus       105 ~~~~~d~liiAtGs~--~~~p~i~g~--~----~v~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~  162 (164)
                      ...-||.|++|||-.  |+.|.++|.  +    .++.+.+-...+ -..++|+|||.|.+|.++|.-
T Consensus       138 ~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d  204 (448)
T KOG1399|consen  138 EEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLD  204 (448)
T ss_pred             eEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHH
Confidence            578899999999976  788888872  1    122222222111 234899999999999999865

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=97.24  E-value=0.00014  Score=59.56  Aligned_cols=70  Identities=26%  Similarity=0.430  Sum_probs=45.8

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEE------eceEEEecCCCCCCCCC-C
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVS------AQNFIIAVGGRPTYPDI-P  126 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~------~d~liiAtGs~~~~p~i-~  126 (164)
                      .++||+++|||||.++|     +.|++.||++.          .+.++.+.....      -..+..-+|.+ .+|.| -
T Consensus         3 ~V~vys~~~Cp~C~~aK-----~~L~~~gi~~~----------~idi~~~~~~~~~~~~~~~~~~~~~~g~~-tvP~ifi   66 (410)
T PRK12759          3 EVRIYTKTNCPFCDLAK-----SWFGANDIPFT----------QISLDDDVKRAEFYAEVNKNILLVEEHIR-TVPQIFV   66 (410)
T ss_pred             cEEEEeCCCCHHHHHHH-----HHHHHCCCCeE----------EEECCCChhHHHHHHHHhhccccccCCCC-ccCeEEE
Confidence            58999999999999999     99999999983          344432111000      01244557766 46763 2


Q ss_pred             Cccceechhhhcc
Q psy7674         127 GAHLGITSDDLFS  139 (164)
Q Consensus       127 g~~~v~~~~~~~~  139 (164)
                      |.+++++++++..
T Consensus        67 ~~~~igGf~~l~~   79 (410)
T PRK12759         67 GDVHIGGYDNLMA   79 (410)
T ss_pred             CCEEEeCchHHHH
Confidence            3378888877754

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.22  E-value=0.00018  Score=42.58  Aligned_cols=26  Identities=46%  Similarity=0.982  Sum_probs=24.3

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +++|++++||+|..++     ++|++.|+++
T Consensus         1 V~vy~~~~C~~C~~~~-----~~L~~~~i~y   26 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAK-----EFLDEKGIPY   26 (60)
T ss_dssp             EEEEESTTSHHHHHHH-----HHHHHTTBEE
T ss_pred             cEEEEcCCCcCHHHHH-----HHHHHcCCee
Confidence            5899999999999999     8999999998

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.21  E-value=0.00038  Score=44.05  Aligned_cols=46  Identities=11%  Similarity=0.321  Sum_probs=35.4

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++.+|++.|+.|+.++++..   ++..+.+.. .|.+++|.+++++.++.
T Consensus        17 ak~~L~~~gI~~~~idi~~~---~~~~~~~~~-~g~~~vPvv~i~~~~~~   62 (81)
T PRK10329         17 TKRAMESRGFDFEMINVDRV---PEAAETLRA-QGFRQLPVVIAGDLSWS   62 (81)
T ss_pred             HHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCCCcCEEEECCEEEe
Confidence            56678999999999999876   444445544 59999999999986443

>KOG1800|consensus

Probab=97.19  E-value=0.00053  Score=55.12  Aligned_cols=124  Identities=27%  Similarity=0.384  Sum_probs=73.5

Q ss_pred             cCCCCcceEEeece-Eec------------CCceEEEeccCCccccc----------ccc--hhhHHHHhhcCceEEeeE
Q psy7674          35 TGQKTVPNIFIHGK-HID------------NNSVVIFSKSWCPFCTK----------AKE--NNYEKELEKNKIDYFNAK   89 (164)
Q Consensus        35 ~g~~~vp~v~i~~~-~ig------------~d~vvv~~~~~cp~~~~----------~~~--~~~~~~l~~~gv~~~~~~   89 (164)
                      +-+.+-|+|-|-|. ..|            .-.+.||.+.--||-..          .|+  ..+...++.....|+-+.
T Consensus        15 s~qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv   94 (468)
T KOG1800|consen   15 STQSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNV   94 (468)
T ss_pred             hhccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecc
Confidence            35666788887663 333            34677788755552211          111  123344444555554321


Q ss_pred             EEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhccC------------cCCCCcEEEECCcH
Q psy7674          90 AVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLFSL------------NKDPGKVLLVGASY  154 (164)
Q Consensus        90 ~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~~~------------~~~~~~vvViGgG~  154 (164)
                      -.   .+.+.+..  -.-.||.+++|.|+. ++.+.|||.  .++++.++....            .-...+|+|||-|+
T Consensus        95 ~v---G~dvsl~e--L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GN  169 (468)
T KOG1800|consen   95 KV---GRDVSLKE--LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGN  169 (468)
T ss_pred             ee---cccccHHH--HhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCc
Confidence            10   01122211  245799999999984 667889997  566665543321            12257899999999


Q ss_pred             HHHHhhccc
Q psy7674         155 IALECAGCD  163 (164)
Q Consensus       155 ~g~E~A~~l  163 (164)
                      +++.+|..|
T Consensus       170 VAlDvARiL  178 (468)
T KOG1800|consen  170 VALDVARIL  178 (468)
T ss_pred             hhhhhhhhh
Confidence            999999876

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.19  E-value=0.00019  Score=45.39  Aligned_cols=27  Identities=22%  Similarity=0.652  Sum_probs=25.1

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||||...+     ..|++.||+|
T Consensus         2 ~v~lYt~~~Cp~C~~ak-----~~L~~~gI~~   28 (81)
T PRK10329          2 RITIYTRNDCVQCHATK-----RAMESRGFDF   28 (81)
T ss_pred             EEEEEeCCCCHhHHHHH-----HHHHHCCCce
Confidence            47899999999999999     8899999998

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.12  E-value=3.8e-05  Score=48.15  Aligned_cols=27  Identities=44%  Similarity=0.903  Sum_probs=24.2

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|...+     ..+++.++++
T Consensus         1 ~v~~y~~~~Cp~C~~~~-----~~l~~~~~~~   27 (82)
T cd03419           1 PVVVFSKSYCPYCKRAK-----SLLKELGVKP   27 (82)
T ss_pred             CEEEEEcCCCHHHHHHH-----HHHHHcCCCc
Confidence            37899999999999999     8899998876

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>KOG0911|consensus

Probab=97.09  E-value=0.0004  Score=51.69  Aligned_cols=49  Identities=14%  Similarity=0.333  Sum_probs=43.7

Q ss_pred             ccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceE
Q psy7674           5 QTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVV   56 (164)
Q Consensus         5 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vv   56 (164)
                      .|++.+++|..++|-.+   +++|+.+.+.+...|.|++||+|+++|+.+++
T Consensus       163 iL~~~nV~~~~fdIL~D---eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl  211 (227)
T KOG0911|consen  163 ILQSHNVNYTIFDVLTD---EELRQGLKEFSDWPTFPQLYVKGEFIGGLDIL  211 (227)
T ss_pred             HHHHcCCCeeEEeccCC---HHHHHHhhhhcCCCCccceeECCEeccCcHHH
Confidence            46778899999999888   88999999999999999999999999977755

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.02  E-value=0.0006  Score=56.56  Aligned_cols=105  Identities=19%  Similarity=0.323  Sum_probs=62.5

Q ss_pred             CCceEEEeccCCc-----ccc----cccc--hhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-
Q psy7674          52 NNSVVIFSKSWCP-----FCT----KAKE--NNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-  119 (164)
Q Consensus        52 ~d~vvv~~~~~cp-----~~~----~~~~--~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-  119 (164)
                      +..+++|.+..-+     |-.    ..+.  ....+.|++.|++|+.+.....   .+++..  -.-.||+++++||+. 
T Consensus       146 G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~it~~~--L~~e~Dav~l~~G~~~  220 (457)
T COG0493         146 GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---DITLEE--LLKEYDAVFLATGAGK  220 (457)
T ss_pred             CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---cCCHHH--HHHhhCEEEEeccccC
Confidence            6677777764422     211    1221  1344678888999987644322   122222  234569999999984 


Q ss_pred             CCCCCCCCc--cceechhhhc--------c-Cc--C----CCCcEEEECCcHHHHHhhc
Q psy7674         120 PTYPDIPGA--HLGITSDDLF--------S-LN--K----DPGKVLLVGASYIALECAG  161 (164)
Q Consensus       120 ~~~p~i~g~--~~v~~~~~~~--------~-~~--~----~~~~vvViGgG~~g~E~A~  161 (164)
                      |+..++||.  +.+...-+.+        . ..  .    ..++++|||||.+++++|.
T Consensus       221 ~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~  279 (457)
T COG0493         221 PRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG  279 (457)
T ss_pred             CCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHH
Confidence            555678886  3554322211        1 11  1    1289999999999999984

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.97  E-value=0.0023  Score=53.50  Aligned_cols=20  Identities=15%  Similarity=0.240  Sum_probs=17.8

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++++|||.|++++.+|..|
T Consensus       197 ~~~vvVIG~GNVAlDvARiL  216 (506)
T PTZ00188        197 FTTSIIIGNGNVSLDIARIL  216 (506)
T ss_pred             CCcEEEECCCchHHHHHHHH
Confidence            36899999999999999876

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.89  E-value=0.002  Score=52.28  Aligned_cols=56  Identities=21%  Similarity=0.319  Sum_probs=42.0

Q ss_pred             EEEEeceEEEecCCCCCCCC----CCCccceechhhhcc-CcC--CCCcEEEECCcHHHHHhhc
Q psy7674         105 RTVSAQNFIIAVGGRPTYPD----IPGAHLGITSDDLFS-LNK--DPGKVLLVGASYIALECAG  161 (164)
Q Consensus       105 ~~~~~d~liiAtGs~~~~p~----i~g~~~v~~~~~~~~-~~~--~~~~vvViGgG~~g~E~A~  161 (164)
                      ..+.+..||+.+|.+|.+|+    +++ +.++.+.+... ..+  ..++|.|||||-+|.|+-.
T Consensus       142 ~~y~ar~lVlg~G~~P~IP~~f~~l~~-~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~  204 (436)
T COG3486         142 TVYRARNLVLGVGTQPYIPPCFRSLIG-ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFL  204 (436)
T ss_pred             cEEEeeeEEEccCCCcCCChHHhCcCc-cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHH
Confidence            58999999999999999997    344 56776665543 222  2245999999999999754

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.88  E-value=0.00049  Score=42.27  Aligned_cols=26  Identities=35%  Similarity=0.718  Sum_probs=24.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +++|++++||+|..++     ++|++.|+.+
T Consensus         1 v~ly~~~~Cp~C~~ak-----~~L~~~~i~~   26 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTK-----KALEEHGIAF   26 (72)
T ss_pred             CEEEeCCCCHHHHHHH-----HHHHHCCCce
Confidence            5789999999999999     8899999998

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.87  E-value=0.00071  Score=42.93  Aligned_cols=69  Identities=30%  Similarity=0.469  Sum_probs=40.9

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhh-----cCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCC--C
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEK-----NKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPD--I  125 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~-----~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~--i  125 (164)
                      .++||+++|||+|.+++     ++|++     .++.+.          .+.++.+  ....+.+.-.+|-. ..+|.  +
T Consensus         2 ~v~iy~~~~C~~C~~a~-----~~L~~l~~~~~~i~~~----------~idi~~~--~~~~~el~~~~~~~~~~vP~ifi   64 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAK-----ELAEKLSEERDDFDYR----------YVDIHAE--GISKADLEKTVGKPVETVPQIFV   64 (85)
T ss_pred             EEEEEeCCCChhHHHHH-----HHHHhhcccccCCcEE----------EEECCCC--hHHHHHHHHHHCCCCCcCCEEEE
Confidence            47899999999999999     77777     577762          2333210  00111222234421 24565  3


Q ss_pred             CCccceechhhhccC
Q psy7674         126 PGAHLGITSDDLFSL  140 (164)
Q Consensus       126 ~g~~~v~~~~~~~~~  140 (164)
                      .| +.+.+.+++..+
T Consensus        65 ~g-~~igg~~~~~~~   78 (85)
T PRK11200         65 DQ-KHIGGCTDFEAY   78 (85)
T ss_pred             CC-EEEcCHHHHHHH
Confidence            45 777777776543

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=96.83  E-value=0.00012  Score=51.59  Aligned_cols=71  Identities=15%  Similarity=0.296  Sum_probs=44.9

Q ss_pred             ceEEEecc------CCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC---CCCCCC
Q psy7674          54 SVVIFSKS------WCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG---RPTYPD  124 (164)
Q Consensus        54 ~vvv~~~~------~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs---~~~~p~  124 (164)
                      .++||+.+      +||||..++     ..|++++|+|.          ++.++.+ ..+ .+.|--.+|.   .+.+|.
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak-----~iL~~~~V~~~----------e~DVs~~-~~~-~~EL~~~~g~~~~~~tvPq   63 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVR-----AILESFRVKFD----------ERDVSMD-SGF-REELRELLGAELKAVSLPR   63 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHH-----HHHHHCCCcEE----------EEECCCC-HHH-HHHHHHHhCCCCCCCCCCE
Confidence            37899998      899999999     89999999983          3444211 000 1112222333   345665


Q ss_pred             --CCCccceechhhhccCcC
Q psy7674         125 --IPGAHLGITSDDLFSLNK  142 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~~~  142 (164)
                        |.| +++++.+++..+.+
T Consensus        64 VFI~G-~~IGG~del~~L~e   82 (147)
T cd03031          64 VFVDG-RYLGGAEEVLRLNE   82 (147)
T ss_pred             EEECC-EEEecHHHHHHHHH
Confidence              345 88888888877653

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG0399|consensus

Probab=96.76  E-value=0.0011  Score=59.83  Aligned_cols=103  Identities=17%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             CCceEEEeccCCc-----ccccc-c-----chhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-
Q psy7674          52 NNSVVIFSKSWCP-----FCTKA-K-----ENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-  119 (164)
Q Consensus        52 ~d~vvv~~~~~cp-----~~~~~-~-----~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-  119 (164)
                      ++.+++|.++.-+     |-.+. |     -...-+++.+.||+|+.++...   +.+.+|.  -.-.+|++|+|+||. 
T Consensus      1808 gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eig---k~vs~d~--l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1808 GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG---KHVSLDE--LKKENDAIVLATGSTT 1882 (2142)
T ss_pred             CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccc---ccccHHH--HhhccCeEEEEeCCCC
Confidence            7888899887633     22221 1     0112356778899997754221   2233343  345789999999985 


Q ss_pred             CCCCCCCCc--cceech------------h---hhccCcCCCCcEEEECCcHHHHHh
Q psy7674         120 PTYPDIPGA--HLGITS------------D---DLFSLNKDPGKVLLVGASYIALEC  159 (164)
Q Consensus       120 ~~~p~i~g~--~~v~~~------------~---~~~~~~~~~~~vvViGgG~~g~E~  159 (164)
                      |+-+|+||-  +.+...            +   |...+....|+|+|||||..|-.+
T Consensus      1883 prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dc 1939 (2142)
T KOG0399|consen 1883 PRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDC 1939 (2142)
T ss_pred             CcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccc
Confidence            666789886  444211            1   112223356899999999988665

>KOG2755|consensus

Probab=96.70  E-value=0.0025  Score=49.05  Aligned_cols=65  Identities=20%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhcc------CcCCCCcEEEECCcHHHHHhhccc
Q psy7674          96 HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS------LNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus        96 ~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~------~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +.+.. +|  ..+.|++|.++||++|.+ ...|. ..+...+|...      .-...|.|.|+|-|-+++|++..|
T Consensus        81 hci~t~~g--~~~ky~kKOG~tg~kPkl-q~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yEl  153 (334)
T KOG2755|consen   81 HCIHTQNG--EKLKYFKLCLCTGYKPKL-QVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYEL  153 (334)
T ss_pred             ceEEecCC--ceeeEEEEEEecCCCcce-eecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHh
Confidence            33444 55  789999999999999875 33432 44443322221      113468999999999999998765

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.65  E-value=0.003  Score=37.98  Aligned_cols=47  Identities=19%  Similarity=0.297  Sum_probs=36.9

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      +..++++.+++|..++++..   ....+.+.++.+..++|.++++++.++
T Consensus        16 ~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~i~~~~~~i~   62 (73)
T cd02976          16 TKRFLDERGIPFEEVDVDED---PEALEELKKLNGYRSVPVVVIGDEHLS   62 (73)
T ss_pred             HHHHHHHCCCCeEEEeCCCC---HHHHHHHHHHcCCcccCEEEECCEEEe
Confidence            34667888999999998775   455667777778899999999887554

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.62  E-value=0.0015  Score=39.12  Aligned_cols=27  Identities=52%  Similarity=0.993  Sum_probs=24.2

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|...+     ..|+++++++
T Consensus         1 ~v~ly~~~~Cp~C~~~~-----~~L~~~~i~~   27 (72)
T cd02066           1 KVVVFSKSTCPYCKRAK-----RLLESLGIEF   27 (72)
T ss_pred             CEEEEECCCCHHHHHHH-----HHHHHcCCcE
Confidence            36899999999999999     8899999887

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.57  E-value=0.0021  Score=54.18  Aligned_cols=20  Identities=30%  Similarity=0.288  Sum_probs=17.7

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++|||||+.|+.+|..|
T Consensus       211 ~~dvvIIGgGpaGl~aA~~l  230 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYA  230 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHH
Confidence            35899999999999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.50  E-value=0.0015  Score=54.94  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ...+|+|||||+.|+++|..|+
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la  232 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAA  232 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHH
Confidence            3478999999999999998763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.30  E-value=0.0057  Score=52.08  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=49.4

Q ss_pred             HHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCc--cceechhhhcc------CcCCCCc
Q psy7674          76 KELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGA--HLGITSDDLFS------LNKDPGK  146 (164)
Q Consensus        76 ~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~--~~v~~~~~~~~------~~~~~~~  146 (164)
                      +.+++.|+++..+.....+   +..+.  ....||++++|||+.+. .+.+++.  ..+...-+.+.      .....++
T Consensus       195 ~~~~~~Gv~~~~~~~~~~~---~~~~~--~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~  269 (564)
T PRK12771        195 QRILDLGVEVRLGVRVGED---ITLEQ--LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKR  269 (564)
T ss_pred             HHHHHCCCEEEeCCEECCc---CCHHH--HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCC
Confidence            4567789988765322111   11111  12358999999999754 3457775  33333222211      1223689


Q ss_pred             EEEECCcHHHHHhhcc
Q psy7674         147 VLLVGASYIALECAGC  162 (164)
Q Consensus       147 vvViGgG~~g~E~A~~  162 (164)
                      ++|+|||+.|++.|..
T Consensus       270 v~ViGgg~~a~d~a~~  285 (564)
T PRK12771        270 VVVIGGGNTAMDAART  285 (564)
T ss_pred             EEEECChHHHHHHHHH
Confidence            9999999999998863

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=96.29  E-value=0.0026  Score=39.01  Aligned_cols=27  Identities=22%  Similarity=0.865  Sum_probs=23.9

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|..+|||+|+..+     ..|.+.++++
T Consensus         1 ~v~ly~~~~C~~C~~~~-----~~L~~~~~~~   27 (77)
T TIGR02200         1 TITVYGTTWCGYCAQLM-----RTLDKLGAAY   27 (77)
T ss_pred             CEEEEECCCChhHHHHH-----HHHHHcCCce
Confidence            37899999999999988     7888888887

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK09897 hypothetical protein; Provisional

Probab=96.19  E-value=0.042  Score=46.69  Aligned_cols=84  Identities=13%  Similarity=0.060  Sum_probs=47.7

Q ss_pred             HhhcC--ceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhh--hccCcCCCCcE
Q psy7674          78 LEKNK--IDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDD--LFSLNKDPGKV  147 (164)
Q Consensus        78 l~~~g--v~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~--~~~~~~~~~~v  147 (164)
                      +.+.|  +.++.. +++.++  ...+.+  +..+..+.+|++|+|||..+..+ .++. .++.+.-+  +.... .+.+|
T Consensus       117 a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~-~~~~~~yi~~pw~~~~~~~i-~~~~V  194 (534)
T PRK09897        117 ARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDE-EEATRTYFPSPWSGLMEAKV-DACNV  194 (534)
T ss_pred             HHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCC-ChhhccccCCCCcchhhcCC-CCCeE
Confidence            34455  666655 666663  233333  22225689999999999754221 1121 12221111  11111 25889


Q ss_pred             EEECCcHHHHHhhccc
Q psy7674         148 LLVGASYIALECAGCD  163 (164)
Q Consensus       148 vViGgG~~g~E~A~~l  163 (164)
                      +|+|.|.+++..+..|
T Consensus       195 ~I~GtGLt~iD~v~~L  210 (534)
T PRK09897        195 GIMGTSLSGLDAAMAV  210 (534)
T ss_pred             EEECCCHHHHHHHHHH
Confidence            9999999999988655

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=96.11  E-value=0.0049  Score=37.10  Aligned_cols=27  Identities=37%  Similarity=0.850  Sum_probs=23.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|+.+|||+|...+     ..+++.++++.
T Consensus         2 i~lf~~~~C~~C~~~~-----~~l~~~~i~~~   28 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAK-----EYLTSKGIAFE   28 (74)
T ss_pred             EEEEcCCCChhHHHHH-----HHHHHCCCeEE
Confidence            6789999999999987     67788888873

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=96.05  E-value=0.0097  Score=35.73  Aligned_cols=44  Identities=20%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceE
Q psy7674           3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKH   49 (164)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~   49 (164)
                      ..++++.++.|..++++..   .+..+.+.+..|..++|.++++|+.
T Consensus        17 ~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~~vP~~~~~~~~   60 (74)
T TIGR02196        17 KEYLTSKGIAFEEIDVEKD---SAAREEVLKVLGQRGVPVIVIGHKI   60 (74)
T ss_pred             HHHHHHCCCeEEEEeccCC---HHHHHHHHHHhCCCcccEEEECCEE
Confidence            4567777888887777765   3444555556799999999999863

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=95.94  E-value=0.0041  Score=41.05  Aligned_cols=27  Identities=30%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|+.++||+|+.++     ++|+++|++|.
T Consensus         1 i~iY~~~~C~~c~ka~-----~~L~~~~i~~~   27 (105)
T cd02977           1 ITIYGNPNCSTSRKAL-----AWLEEHGIEYE   27 (105)
T ss_pred             CEEEECCCCHHHHHHH-----HHHHHcCCCcE
Confidence            4789999999999999     89999999984

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=95.94  E-value=0.0043  Score=41.56  Aligned_cols=27  Identities=33%  Similarity=0.634  Sum_probs=24.5

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|+.++||+|++++     ++|+++|++|.
T Consensus         1 i~iY~~~~C~~c~ka~-----~~L~~~~i~~~   27 (111)
T cd03036           1 LKFYEYPKCSTCRKAK-----KWLDEHGVDYT   27 (111)
T ss_pred             CEEEECCCCHHHHHHH-----HHHHHcCCceE
Confidence            4689999999999999     89999999984

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=95.91  E-value=0.0072  Score=36.17  Aligned_cols=17  Identities=29%  Similarity=0.886  Sum_probs=14.9

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .+++|+++|||+|...+
T Consensus         2 ~v~~f~~~~C~~C~~~~   18 (67)
T cd02973           2 NIEVFVSPTCPYCPDAV   18 (67)
T ss_pred             EEEEEECCCCCCcHHHH
Confidence            46889999999998877

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.52  E-value=0.1  Score=43.07  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=53.8

Q ss_pred             ceEEeeceEec----------CCceEEEeccCC--cccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEE
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERT  106 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~  106 (164)
                      ..+.|++-.+|          +..++++.+...  +.........+.+.+++.||+++.+ .+..++...+.+ ++  +.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g--~~  227 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSG--KV  227 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCC--CE
Confidence            34556665455          457777776542  2222222344567788899999887 556676666666 44  57


Q ss_pred             EEeceEEEecCCCCCCC
Q psy7674         107 VSAQNFIIAVGGRPTYP  123 (164)
Q Consensus       107 ~~~d~liiAtGs~~~~p  123 (164)
                      +.+|.+++|+|.+|+..
T Consensus       228 ~~~D~vl~a~G~~pn~~  244 (438)
T PRK13512        228 EHYDMIIEGVGTHPNSK  244 (438)
T ss_pred             EEeCEEEECcCCCcChH
Confidence            89999999999998753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.51  E-value=0.064  Score=44.66  Aligned_cols=73  Identities=21%  Similarity=0.320  Sum_probs=49.8

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeEE-EEee--Cc--EEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAKA-VFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~~-~~~~--~~--~v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+++++.+..  .|.+.+.-...+.+.|++.+++++.+.. ..+.  ..  .+.+ ++....+.+|++++|+|-+|+..
T Consensus       196 G~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~  275 (454)
T COG1249         196 GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD  275 (454)
T ss_pred             CCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence            66777776654  5566666666777888888899998854 3342  22  2333 34222688999999999888776


Q ss_pred             C
Q psy7674         124 D  124 (164)
Q Consensus       124 ~  124 (164)
                      .
T Consensus       276 ~  276 (454)
T COG1249         276 G  276 (454)
T ss_pred             C
Confidence            4

>KOG2824|consensus

Probab=95.37  E-value=0.0089  Score=45.92  Aligned_cols=54  Identities=17%  Similarity=0.282  Sum_probs=43.4

Q ss_pred             CcccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC----CCcceEEeeceEecCCceEE
Q psy7674           1 MVDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ----KTVPNIFIHGKHIDNNSVVI   57 (164)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~----~~vp~v~i~~~~ig~d~vvv   57 (164)
                      +|..+|+.+++.|..-+|.-+   +..+++|+++.|.    -+.|+|||+|.+||+-..++
T Consensus       152 ~VR~ilesf~V~v~ERDVSMd---~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~  209 (281)
T KOG2824|consen  152 AVRAILESFRVKVDERDVSMD---SEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV  209 (281)
T ss_pred             HHHHHHHhCceEEEEeccccc---HHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence            366789999999999988877   6777777776655    56899999999999776554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.30  E-value=0.12  Score=43.09  Aligned_cols=74  Identities=22%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee---CcEEE-e---CCeeEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KHRVK-F---AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~~v~-v---~~~~~~~~~d~liiAtGs~~~  121 (164)
                      +..++++.+..  .|.........+.+.+++.||+++.+ .+..++   ...+. +   +++...+.+|.+++|+|.+|+
T Consensus       203 g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        203 GVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             CCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence            45566665433  23322222334556788899999988 455553   22222 1   443347999999999999988


Q ss_pred             CCCC
Q psy7674         122 YPDI  125 (164)
Q Consensus       122 ~p~i  125 (164)
                      .+.+
T Consensus       283 ~~~l  286 (472)
T PRK05976        283 TEGI  286 (472)
T ss_pred             CCCC
Confidence            6543

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.26  E-value=0.014  Score=34.92  Aligned_cols=27  Identities=30%  Similarity=0.754  Sum_probs=23.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +++|+.+|||+|.+.+     ..+++.++++.
T Consensus         2 v~l~~~~~c~~c~~~~-----~~l~~~~i~~~   28 (73)
T cd02976           2 VTVYTKPDCPYCKATK-----RFLDERGIPFE   28 (73)
T ss_pred             EEEEeCCCChhHHHHH-----HHHHHCCCCeE
Confidence            6889999999999987     77888888773

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=95.19  E-value=0.012  Score=40.62  Aligned_cols=27  Identities=37%  Similarity=0.652  Sum_probs=24.7

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|+.++||+|++++     .+|+++||+|.
T Consensus         2 i~iY~~~~C~~C~ka~-----~~L~~~gi~~~   28 (131)
T PRK01655          2 VTLFTSPSCTSCRKAK-----AWLEEHDIPFT   28 (131)
T ss_pred             EEEEeCCCChHHHHHH-----HHHHHcCCCcE
Confidence            5789999999999999     89999999983

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=95.06  E-value=0.023  Score=34.63  Aligned_cols=43  Identities=12%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhc-CCCCcceEEeec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERT-GQKTVPNIFIHG   47 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-g~~~vp~v~i~~   47 (164)
                      +..+|++.++.|..++++..   ....+.+.+++ +..++|.+++++
T Consensus        16 ~~~~L~~~~~~~~~idi~~~---~~~~~~~~~~~~~~~~vP~i~~~~   59 (77)
T TIGR02200        16 LMRTLDKLGAAYEWVDIEED---EGAADRVVSVNNGNMTVPTVKFAD   59 (77)
T ss_pred             HHHHHHHcCCceEEEeCcCC---HhHHHHHHHHhCCCceeCEEEECC
Confidence            45678889999999888776   44456666666 889999997754

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.00  E-value=0.12  Score=42.60  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe--CCe
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF--AGE  103 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v--~~~  103 (164)
                      ..+.|++-.+|          +.+++++.+..  .|...........+.+++.||+++.+ .+..++.  ..+.+  ++ 
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g-  237 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTED-  237 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECC-
Confidence            35555665455          45677776643  22222222334456788899999987 4555542  23433  44 


Q ss_pred             eEEEEeceEEEecCCCCCCCC
Q psy7674         104 ERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       104 ~~~~~~d~liiAtGs~~~~p~  124 (164)
                       ..+.+|.+++|+|.+|+...
T Consensus       238 -~~i~~D~viva~G~~p~~~~  257 (438)
T PRK07251        238 -ETYRFDALLYATGRKPNTEP  257 (438)
T ss_pred             -eEEEcCEEEEeeCCCCCccc
Confidence             57999999999999988653

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.93  E-value=0.14  Score=42.57  Aligned_cols=73  Identities=18%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe--CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF--AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v--~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +.+++++.+..  .|.........+.+.|++.||+++.+ .+..++.  ..+.+  ++....+.+|.+++|||.+|+...
T Consensus       193 g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~  272 (458)
T PRK06912        193 GTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ  272 (458)
T ss_pred             CCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence            34555665433  22222222334567788899999987 4555542  23333  332246899999999999987653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.75  E-value=0.22  Score=40.82  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=50.7

Q ss_pred             ceEEeeceEec----------CCceEEEeccCCc---ccccccchhhHHHHhhcCceEEee-EEEEeeCcE-E-Ee-CCe
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSWCP---FCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHR-V-KF-AGE  103 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~cp---~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~-v-~v-~~~  103 (164)
                      ..+++++-.++          +..++++.+...+   .........+.+.+++.||+++.+ .+..++... + .+ ++ 
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g-  217 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG-  217 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC-
Confidence            45566665455          4467777654322   122222334567788899999877 455565322 2 33 44 


Q ss_pred             eEEEEeceEEEecCCCCCCC
Q psy7674         104 ERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus       104 ~~~~~~d~liiAtGs~~~~p  123 (164)
                       ..+.+|.+++|+|.+|..+
T Consensus       218 -~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       218 -GVYQADMVILATGIKPNSE  236 (427)
T ss_pred             -CEEEeCEEEECCCccCCHH
Confidence             5799999999999998753

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=94.61  E-value=0.031  Score=36.71  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             ccccCCCCCccEEEEecCCCChhHHHHHHHhhcC--------CCCc-ceEEeeceEec
Q psy7674           3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTG--------QKTV-PNIFIHGKHID   51 (164)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g--------~~~v-p~v~i~~~~ig   51 (164)
                      ..+|+.++++|+.++|..+   .+.++.+.+..|        .... |++|.+++.+|
T Consensus        24 ~~iL~a~kI~fe~vDIa~~---e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G   78 (99)
T PF04908_consen   24 LMILEAKKIPFEEVDIAMD---EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG   78 (99)
T ss_dssp             HHHHHHTT--EEEEETTT----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred             HHHHHHcCCCcEEEeCcCC---HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence            4578889999999999886   666677766663        3344 79999999777

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.61  E-value=0.26  Score=40.81  Aligned_cols=72  Identities=21%  Similarity=0.336  Sum_probs=44.8

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ..+++++.+..  .|+........+.+.+++.||+++.+ .+..++  ...+.+   ++....+.+|.+++|+|.+|+..
T Consensus       193 g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       193 GSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             CCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            34556665433  22322222334566788899999988 455553  333433   33224699999999999998766

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=94.60  E-value=0.17  Score=40.46  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=44.7

Q ss_pred             ceEEEeccCCcccc-cccchhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674          54 SVVIFSKSWCPFCT-KAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        54 ~vvv~~~~~cp~~~-~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~  121 (164)
                      +++++..+...... ......+.+.+++.||+++.+ .+..++...+.+ ++  ..+.+|.+++|+|.+|.
T Consensus       176 ~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g--~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       176 QVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILADG--RTLPADAILWATGARAP  244 (364)
T ss_pred             eEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCC--CEEecCEEEEccCCChh
Confidence            56666443322221 112334567888999999988 455666666666 45  67999999999999875

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1336|consensus

Probab=94.59  E-value=0.22  Score=41.38  Aligned_cols=98  Identities=14%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             hHHHHHHHhhcCCCCcceEEeeceEec----------CCceEEEec-cCCc--ccccccchhhHHHHhhcCceEEeeEEE
Q psy7674          25 AQIQTALFERTGQKTVPNIFIHGKHID----------NNSVVIFSK-SWCP--FCTKAKENNYEKELEKNKIDYFNAKAV   91 (164)
Q Consensus        25 ~~~~~~l~~~~g~~~vp~v~i~~~~ig----------~d~vvv~~~-~~cp--~~~~~~~~~~~~~l~~~gv~~~~~~~~   91 (164)
                      ++..+.+..+ +. ..-.+.+++.+++          ...++|+.+ .||-  .........++..|+++||++++++..
T Consensus       201 eda~~l~~~~-~~-~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~  278 (478)
T KOG1336|consen  201 EDANRLVAAI-QL-GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVV  278 (478)
T ss_pred             HHHHHHHHHh-cc-CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecce
Confidence            4444444433 22 3344555666666          455566554 5544  222233557888999999999999653


Q ss_pred             -Eee----CcEEEe---CCeeEEEEeceEEEecCCCCCCCCCC
Q psy7674          92 -FVD----KHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP  126 (164)
Q Consensus        92 -~~~----~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~  126 (164)
                       .++    .+...+   ++  ..+.+|.+++.+|++|+.+...
T Consensus       279 s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  279 SSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             eecccCCCCcEEEEEeccC--CEeccCeEEEeecccccccccc
Confidence             332    233333   55  7899999999999999987655

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=94.39  E-value=0.02  Score=38.56  Aligned_cols=27  Identities=33%  Similarity=0.697  Sum_probs=24.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|..++||+|+.++     ++|+++|+++.
T Consensus         1 i~iY~~~~C~~c~ka~-----~~L~~~~i~~~   27 (117)
T TIGR01617         1 IKVYGSPNCTTCKKAR-----RWLEANGIEYQ   27 (117)
T ss_pred             CEEEeCCCCHHHHHHH-----HHHHHcCCceE
Confidence            4689999999999999     89999999873

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.98  E-value=0.37  Score=39.94  Aligned_cols=73  Identities=27%  Similarity=0.271  Sum_probs=45.6

Q ss_pred             CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe---C-CeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF---A-GEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v---~-~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +.+++++.+...+  .........+.+.+++.||+++.+ .+..++.  ..+.+   + ++.+.+.+|.+++|+|.+|+.
T Consensus       195 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        195 GAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             CCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence            4456666654332  222222334567788899999988 4555542  23333   2 222568999999999999876


Q ss_pred             CC
Q psy7674         123 PD  124 (164)
Q Consensus       123 p~  124 (164)
                      ..
T Consensus       275 ~~  276 (462)
T PRK06416        275 EN  276 (462)
T ss_pred             CC
Confidence            54

>PRK06370 mercuric reductase; Validated

Probab=93.80  E-value=0.35  Score=40.12  Aligned_cols=72  Identities=17%  Similarity=0.264  Sum_probs=44.5

Q ss_pred             CCceEEEeccCCccc--ccccchhhHHHHhhcCceEEee-EEEEeeC--c--EEEe--CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWCPFC--TKAKENNYEKELEKNKIDYFNA-KAVFVDK--H--RVKF--AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~--~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~--~v~v--~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +..++++.+...+..  .......+.+.+++.|++++.+ .+..++.  .  .+.+  +++...+.+|.+++|+|.+|+.
T Consensus       194 G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        194 GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             CCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence            455666665443311  1112334567788899999987 5555542  2  2333  2323579999999999999886


Q ss_pred             C
Q psy7674         123 P  123 (164)
Q Consensus       123 p  123 (164)
                      .
T Consensus       274 ~  274 (463)
T PRK06370        274 D  274 (463)
T ss_pred             C
Confidence            5

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=93.77  E-value=0.038  Score=37.13  Aligned_cols=27  Identities=30%  Similarity=0.623  Sum_probs=24.4

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|..++|++|++++     ++|+++|+++.
T Consensus         2 i~iY~~~~C~~c~ka~-----~~L~~~gi~~~   28 (115)
T cd03032           2 IKLYTSPSCSSCRKAK-----QWLEEHQIPFE   28 (115)
T ss_pred             EEEEeCCCCHHHHHHH-----HHHHHCCCceE
Confidence            5789999999999999     89999999883

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=93.57  E-value=0.042  Score=37.93  Aligned_cols=27  Identities=48%  Similarity=0.826  Sum_probs=24.7

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +++|+.++|++|+.++     .+|++.|++|.
T Consensus         2 i~iY~~~~C~~crkA~-----~~L~~~gi~~~   28 (131)
T PRK12559          2 VVLYTTASCASCRKAK-----AWLEENQIDYT   28 (131)
T ss_pred             EEEEeCCCChHHHHHH-----HHHHHcCCCeE
Confidence            6789999999999999     89999999983

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=93.46  E-value=0.052  Score=33.50  Aligned_cols=17  Identities=35%  Similarity=0.991  Sum_probs=14.8

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .+.+|.++|||+|...+
T Consensus         2 ~v~~f~~~~C~~C~~~~   18 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAK   18 (82)
T ss_pred             EEEEEECCCCcchHHHH
Confidence            36789999999999877

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=93.29  E-value=0.12  Score=30.15  Aligned_cols=46  Identities=11%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ..+++..++.|+.++++..++...   .+.+..+.+++|.++.++..+.
T Consensus        16 ~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~   61 (71)
T cd00570          16 RLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLT   61 (71)
T ss_pred             HHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEE
Confidence            457788899999999987654333   4556789999999999876443

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>PRK14694 putative mercuric reductase; Provisional

Probab=93.26  E-value=0.44  Score=39.68  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=45.0

Q ss_pred             CCceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          52 NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        52 ~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ...++++.+.. .|...+.....+.+.+++.||+++.+ .+..++  ...+.+  ++  ..+.+|.+++|+|.+|+...
T Consensus       201 g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~--~~i~~D~vi~a~G~~pn~~~  277 (468)
T PRK14694        201 GSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA--GTLRAEQLLVATGRTPNTEN  277 (468)
T ss_pred             CCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC--CEEEeCEEEEccCCCCCcCC
Confidence            45666666532 12222222345667788899999987 555554  233333  33  46999999999999988653

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=93.11  E-value=0.072  Score=38.87  Aligned_cols=40  Identities=20%  Similarity=0.594  Sum_probs=25.3

Q ss_pred             eceEec--CCceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          46 HGKHID--NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        46 ~~~~ig--~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +|+.+.  .-.+++|-.+|||||+..-. .+.++.+++++.++
T Consensus        62 dG~~v~lsd~~lV~FwaswCp~C~~e~P-~L~~l~~~~g~~Vi  103 (181)
T PRK13728         62 NGRQVNLADWKVVLFMQGHCPYCHQFDP-VLKQLAQQYGFSVF  103 (181)
T ss_pred             CCCEeehhHceEEEEECCCCHhHHHHHH-HHHHHHHHcCCEEE
Confidence            554343  22377799999999998741 22245566677664

>TIGR02053 MerA mercuric reductase

Probab=93.02  E-value=0.61  Score=38.67  Aligned_cols=73  Identities=21%  Similarity=0.289  Sum_probs=45.0

Q ss_pred             CCceEEEeccCC--cccccccchhhHHHHhhcCceEEeeE-EEEee--CcE--EEe--CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KHR--VKF--AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~~--v~v--~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      ..+++++.+...  |...+.....+.+.+++.||+++.+. +..++  ...  +.+  +++...+.+|.+++|+|.+|+.
T Consensus       189 g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       189 GSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             CCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence            456666665432  22222223345677888999999884 55553  222  333  2223579999999999999887


Q ss_pred             CC
Q psy7674         123 PD  124 (164)
Q Consensus       123 p~  124 (164)
                      .+
T Consensus       269 ~~  270 (463)
T TIGR02053       269 DG  270 (463)
T ss_pred             CC
Confidence            64

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=92.98  E-value=0.067  Score=36.98  Aligned_cols=27  Identities=33%  Similarity=0.603  Sum_probs=24.6

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|+.++|+.|+.++     .+|+++|++|.
T Consensus         2 i~iY~~~~C~~crkA~-----~~L~~~~i~~~   28 (132)
T PRK13344          2 IKIYTISSCTSCKKAK-----TWLNAHQLSYK   28 (132)
T ss_pred             EEEEeCCCCHHHHHHH-----HHHHHcCCCeE
Confidence            5789999999999999     89999999984

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=92.97  E-value=0.39  Score=39.11  Aligned_cols=47  Identities=17%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             hHHHHhhcCceEEee-EEEEeeCc--EEEeCCeeEEEEeceEEEecCCCC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~~--~v~v~~~~~~~~~d~liiAtGs~~  120 (164)
                      +...+++.||+++.+ ++..++..  .+.+......+.+|+||+|||+.+
T Consensus        92 L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        92 WLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            556778899999988 55667443  233322224689999999999864

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.88  E-value=0.6  Score=38.64  Aligned_cols=70  Identities=13%  Similarity=0.173  Sum_probs=44.9

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEE--e-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVK--F-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~--v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+++++.+..  .|+........+.+.+++.|++++.+ .+..++  ...+.  + ++  ..+.+|.+++|+|.+|+..
T Consensus       198 g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        198 GVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSG--KKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             CCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCC--CEEEeCEEEEeecCCcccc
Confidence            45566665432  33433333445667788899999987 455553  23333  3 34  5799999999999998764

>PHA02125 thioredoxin-like protein

Probab=92.84  E-value=0.072  Score=32.77  Aligned_cols=16  Identities=31%  Similarity=1.007  Sum_probs=14.4

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      +++|+.+||+.|+..+
T Consensus         2 iv~f~a~wC~~Ck~~~   17 (75)
T PHA02125          2 IYLFGAEWCANCKMVK   17 (75)
T ss_pred             EEEEECCCCHhHHHHH
Confidence            6789999999999877

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=92.62  E-value=0.074  Score=36.14  Aligned_cols=17  Identities=24%  Similarity=0.772  Sum_probs=14.4

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      -++.|.++|||+|+.-.
T Consensus        26 ~iv~f~~~~Cp~C~~~~   42 (122)
T TIGR01295        26 ATFFIGRKTCPYCRKFS   42 (122)
T ss_pred             EEEEEECCCChhHHHHh
Confidence            36779999999999865

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.53  E-value=0.69  Score=38.37  Aligned_cols=73  Identities=18%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKFAGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+++++.+...+  .........+.+.|++.||+++.+ .+..++.   .  .+.+++....+.+|.+++|+|.+|+..
T Consensus       189 g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       189 GSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             CCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence            4566666654432  322233344567788899999987 4455532   1  233332224689999999999998865


Q ss_pred             C
Q psy7674         124 D  124 (164)
Q Consensus       124 ~  124 (164)
                      .
T Consensus       269 ~  269 (450)
T TIGR01421       269 G  269 (450)
T ss_pred             c
Confidence            3

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=92.53  E-value=0.45  Score=39.12  Aligned_cols=49  Identities=14%  Similarity=0.168  Sum_probs=38.4

Q ss_pred             chhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674          71 ENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        71 ~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~  121 (164)
                      .....+.|++.||+++.+ .+..++...+.+ ++  +.+++|.+++++|.+|+
T Consensus       231 ~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g--~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        231 RKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDG--EVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCC--CEEEccEEEEccCCCCc
Confidence            344567889999999977 566677667766 45  68999999999998875

>KOG3425|consensus

Probab=92.52  E-value=0.12  Score=35.03  Aligned_cols=40  Identities=28%  Similarity=0.547  Sum_probs=28.6

Q ss_pred             hHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCccccccc
Q psy7674          25 AQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        25 ~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~   70 (164)
                      +++|+.+.....++++=..|.+++.    +  --..+|||+|+.+.
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd----~--~tGqSWCPdCV~AE   52 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKD----D--TTGQSWCPDCVAAE   52 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccC----C--CCCCcCCchHHHhh
Confidence            7888899888777776666666551    1  12359999999987

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.49  E-value=0.59  Score=38.51  Aligned_cols=72  Identities=17%  Similarity=0.276  Sum_probs=43.8

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ..+++++.+..  .|...+.....+.+.+++.||+++.+ ++..++  ...+.+..+...+.+|.+++|+|.+|+..
T Consensus       181 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~  257 (441)
T PRK08010        181 GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA  257 (441)
T ss_pred             CCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence            44566665532  23222222334567788899999987 455554  23344411113588999999999998764

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=92.47  E-value=0.068  Score=35.41  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=24.5

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|+.++|+.|++++     .+|+++|+++.
T Consensus         1 i~iy~~~~C~~crka~-----~~L~~~~i~~~   27 (105)
T cd03035           1 ITLYGIKNCDTVKKAR-----KWLEARGVAYT   27 (105)
T ss_pred             CEEEeCCCCHHHHHHH-----HHHHHcCCCeE
Confidence            4789999999999999     89999999984

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=92.46  E-value=0.8  Score=38.20  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=43.7

Q ss_pred             CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---C--CeeEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---A--GEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~--~~~~~~~~d~liiAtGs~~~  121 (164)
                      ..+++++.+...+  .........+.+.|++.||+++.+ .+..++  ...+.+   +  ++...+.+|.+++|+|.+|+
T Consensus       206 g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        206 GAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             CCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence            3455666543322  111122234456778889999987 555554  223322   2  32246999999999999988


Q ss_pred             CCC
Q psy7674         122 YPD  124 (164)
Q Consensus       122 ~p~  124 (164)
                      ...
T Consensus       286 ~~~  288 (475)
T PRK06327        286 TDG  288 (475)
T ss_pred             CCC
Confidence            764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=92.39  E-value=0.77  Score=37.98  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ..+++++.+...+  .........+.+.+++.|++++.+ .+..++  ...  +.+ ++  ..+.+|.+++|+|.+|+..
T Consensus       189 G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       189 GVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHG--EEIVADVVLFATGRSPNTK  266 (446)
T ss_pred             CCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCC--cEeecCEEEEeeCCCcCCC
Confidence            4556666654432  211222334556788899999987 455553  222  333 34  5799999999999988764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06116 glutathione reductase; Validated

Probab=92.26  E-value=0.77  Score=37.95  Aligned_cols=71  Identities=20%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +..++++.+...+  ...+.....+.+.+++.||+++.+ ++..++.   .  .+.. ++  ..+.+|.+++|+|.+|+.
T Consensus       190 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g--~~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        190 GSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG--ETLTVDCLIWAIGREPNT  267 (450)
T ss_pred             CCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC--cEEEeCEEEEeeCCCcCC
Confidence            4455666553322  222222334567788899999987 4555532   2  2333 44  579999999999999886


Q ss_pred             CC
Q psy7674         123 PD  124 (164)
Q Consensus       123 p~  124 (164)
                      ..
T Consensus       268 ~~  269 (450)
T PRK06116        268 DG  269 (450)
T ss_pred             CC
Confidence            54

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=92.23  E-value=0.08  Score=43.90  Aligned_cols=22  Identities=32%  Similarity=0.244  Sum_probs=19.0

Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++|+|||||+.|+++|..|
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l  159 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRL  159 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHH
Confidence            3458999999999999999765

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=92.18  E-value=0.41  Score=39.35  Aligned_cols=51  Identities=24%  Similarity=0.307  Sum_probs=40.4

Q ss_pred             chhhHHHHhhcCceEEeeE-EEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          71 ENNYEKELEKNKIDYFNAK-AVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        71 ~~~~~~~l~~~gv~~~~~~-~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +...++.|+++||+++.++ ++.++++.+++ +++ +.++++.+|.|+|-+++.
T Consensus       212 ~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~-~~I~~~tvvWaaGv~a~~  264 (405)
T COG1252         212 SKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGE-EEIPADTVVWAAGVRASP  264 (405)
T ss_pred             HHHHHHHHHHCCCEEEcCCceEEECCCcEEEccCC-eeEecCEEEEcCCCcCCh
Confidence            4445678999999999984 56788888888 442 269999999999988753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.08  E-value=0.89  Score=37.81  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=43.9

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--cE--EEe---CCeeEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HR--VKF---AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~--v~v---~~~~~~~~~d~liiAtGs~~~  121 (164)
                      +.+++++.+..  .|.........+.+.|++.||+++.+ .+..++.  ..  +.+   +++...+.+|.+++|+|.+|+
T Consensus       195 G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        195 GVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             CCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence            34555554432  33222223345667788999999987 4555532  22  222   232246999999999999887


Q ss_pred             CC
Q psy7674         122 YP  123 (164)
Q Consensus       122 ~p  123 (164)
                      ..
T Consensus       275 ~~  276 (466)
T PRK07818        275 VE  276 (466)
T ss_pred             CC
Confidence            65

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=92.07  E-value=0.89  Score=37.87  Aligned_cols=71  Identities=20%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ..+++++.+...+  .........+.+.|++.||+++.+ ++..++  ...+.+   ++  +.+.+|.+++|+|.+|+..
T Consensus       200 g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g--~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        200 GVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDG--RTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             CCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCC--cEEEecEEEEeecCCcCCC
Confidence            4455556543322  222222334567788899999987 455553  233333   44  5799999999999998865


Q ss_pred             C
Q psy7674         124 D  124 (164)
Q Consensus       124 ~  124 (164)
                      .
T Consensus       278 ~  278 (466)
T PRK07845        278 G  278 (466)
T ss_pred             C
Confidence            3

>PTZ00188 adrenodoxin reductase; Provisional

Probab=92.05  E-value=0.08  Score=44.51  Aligned_cols=21  Identities=38%  Similarity=0.395  Sum_probs=18.5

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++|+|||+|+.|+++|..|
T Consensus        38 ~~krVAIVGaGPAGlyaA~~L   58 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHL   58 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHH
Confidence            468999999999999999854

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=92.01  E-value=0.28  Score=29.04  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             CCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674          10 DYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus        10 ~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++.+..++++..   .+    +.+..|..++|++++++++++
T Consensus        30 ~i~~~~id~~~~---~~----l~~~~~i~~vPti~i~~~~~~   64 (67)
T cd02973          30 NISAEMIDAAEF---PD----LADEYGVMSVPAIVINGKVEF   64 (67)
T ss_pred             ceEEEEEEcccC---Hh----HHHHcCCcccCEEEECCEEEE
Confidence            455555555544   22    334558889999999998654

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=91.91  E-value=1.2  Score=37.13  Aligned_cols=66  Identities=18%  Similarity=0.186  Sum_probs=44.7

Q ss_pred             cceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhcCceEEee-EEEEee--Cc---EEEe-CCeeEEEEeceE
Q psy7674          40 VPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH---RVKF-AGEERTVSAQNF  112 (164)
Q Consensus        40 vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~---~v~v-~~~~~~~~~d~l  112 (164)
                      .-.+.+..-|+|.|..            +.-..++++.++++|++++.. +++.+.  ..   .+.+ ++  ..+.+|++
T Consensus       157 ~eil~~~~rHiGTD~l------------~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--~~i~~~~v  222 (486)
T COG2509         157 EEILPIYQRHIGTDIL------------PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--EEIEADYV  222 (486)
T ss_pred             ceeeeccccccCccch------------HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCC--cEEecCEE
Confidence            4445556677777763            233456788899999999887 454443  22   2222 44  68999999


Q ss_pred             EEecCCC
Q psy7674         113 IIAVGGR  119 (164)
Q Consensus       113 iiAtGs~  119 (164)
                      |+|.|-+
T Consensus       223 vlA~Grs  229 (486)
T COG2509         223 VLAPGRS  229 (486)
T ss_pred             EEccCcc
Confidence            9999954

>PLN02507 glutathione reductase

Probab=91.76  E-value=1  Score=37.95  Aligned_cols=73  Identities=15%  Similarity=0.180  Sum_probs=45.1

Q ss_pred             CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ..+++++.+...+  .........+.+.|++.||+++.+ .+..++  ...+.+ .+++..+.+|.+++|+|.+|+...
T Consensus       226 G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        226 GATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             CCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence            4566776654322  222222334556788899999988 455553  233333 111257999999999999987653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.50  E-value=0.11  Score=47.05  Aligned_cols=22  Identities=9%  Similarity=-0.022  Sum_probs=19.5

Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+++|+|||||+.|+++|..|+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La  403 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLL  403 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHH
Confidence            4589999999999999998773

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=91.39  E-value=0.75  Score=37.60  Aligned_cols=53  Identities=28%  Similarity=0.419  Sum_probs=34.2

Q ss_pred             ccccccchh----hHHHHhhcCceEEeeE-EEEeeCc--EEEe---CCeeEEEEeceEEEecCCC
Q psy7674          65 FCTKAKENN----YEKELEKNKIDYFNAK-AVFVDKH--RVKF---AGEERTVSAQNFIIAVGGR  119 (164)
Q Consensus        65 ~~~~~~~~~----~~~~l~~~gv~~~~~~-~~~~~~~--~v~v---~~~~~~~~~d~liiAtGs~  119 (164)
                      ||...+...    +...+++.||+++..+ +..++..  ...+   ++  +.+.+|.+|+|||..
T Consensus       104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g--~~i~~d~lilAtGG~  166 (408)
T COG2081         104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG--ETVKCDSLILATGGK  166 (408)
T ss_pred             cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC--CEEEccEEEEecCCc
Confidence            555444332    3456788899999874 4455422  3333   33  479999999999943

>KOG1335|consensus

Probab=91.39  E-value=1.6  Score=35.78  Aligned_cols=63  Identities=13%  Similarity=0.269  Sum_probs=42.2

Q ss_pred             cCCcccccccchhhHHHHhhcCceEEeeE-EEEee---CcE--EEe----CCeeEEEEeceEEEecCCCCCCC
Q psy7674          61 SWCPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD---KHR--VKF----AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        61 ~~cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~---~~~--v~v----~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .-||.-..+.+....+.|.+.|++|+.++ +...+   ...  +++    ++..+.+..|.|++++|-+|..-
T Consensus       245 ~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~  317 (506)
T KOG1335|consen  245 QIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE  317 (506)
T ss_pred             hhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence            33555444455566788889999999985 44432   213  333    34456899999999999877553

>PTZ00058 glutathione reductase; Provisional

Probab=91.18  E-value=1.2  Score=38.26  Aligned_cols=83  Identities=16%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEeeCc---EEEe--CC
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVDKH---RVKF--AG  102 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~~---~v~v--~~  102 (164)
                      ..++|++..+|          +.+++++.+..  .|.........+.+.+++.||+++.+. +..++..   .+.+  .+
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~  318 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSD  318 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECC
Confidence            45566666566          45666666533  333333333455677888999999874 4445421   2222  22


Q ss_pred             eeEEEEeceEEEecCCCCCCC
Q psy7674         103 EERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus       103 ~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +...+.+|.+++|+|.+|+..
T Consensus       319 ~~~~i~aD~VlvA~Gr~Pn~~  339 (561)
T PTZ00058        319 GRKYEHFDYVIYCVGRSPNTE  339 (561)
T ss_pred             CCEEEECCEEEECcCCCCCcc
Confidence            225799999999999887754

>PRK14727 putative mercuric reductase; Provisional

Probab=91.15  E-value=1  Score=37.72  Aligned_cols=82  Identities=17%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             ceEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe--CCee
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEE  104 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~  104 (164)
                      ..++|++-.+|          +.+++++.++. .+...+.....+.+.+++.||+++.+ .+..++  ...+.+  ++  
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~--  267 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGH--  267 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcC--
Confidence            34555554444          44566666532 22222222334566788899999987 444443  333333  33  


Q ss_pred             EEEEeceEEEecCCCCCCCC
Q psy7674         105 RTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       105 ~~~~~d~liiAtGs~~~~p~  124 (164)
                      ..+.+|.+++|+|.+|+...
T Consensus       268 g~i~aD~VlvA~G~~pn~~~  287 (479)
T PRK14727        268 GELRAEKLLISTGRHANTHD  287 (479)
T ss_pred             CeEEeCEEEEccCCCCCccC
Confidence            35889999999999987653

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=91.07  E-value=0.14  Score=31.26  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=24.0

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +.+|..+.||||++.+     ..|...|+++.
T Consensus         2 i~Ly~~~~~p~c~kv~-----~~L~~~gi~y~   28 (77)
T cd03040           2 ITLYQYKTCPFCCKVR-----AFLDYHGIPYE   28 (77)
T ss_pred             EEEEEcCCCHHHHHHH-----HHHHHCCCceE
Confidence            6789999999999999     88899999873

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.89  E-value=1  Score=38.30  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=43.8

Q ss_pred             CCceEEEeccCC-cccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          52 NNSVVIFSKSWC-PFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        52 ~d~vvv~~~~~c-p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ...++++.+... +.........+.+.+++.||+++.+ .+..+.  ...+.+  ++  ..+.+|.+++|+|.+|+...
T Consensus       293 g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~--~~i~~D~vi~a~G~~pn~~~  369 (561)
T PRK13748        293 GSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGH--GELRADKLLVATGRAPNTRS  369 (561)
T ss_pred             CCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecC--CeEEeCEEEEccCCCcCCCC
Confidence            445666665431 1222222344567788899999987 444453  223333  33  36899999999999988643

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.88  E-value=1.3  Score=36.81  Aligned_cols=72  Identities=19%  Similarity=0.255  Sum_probs=43.5

Q ss_pred             CCceEEEeccCC--cccccccchhhHHHHhhcCceEEee-EEEEeeC--cEE--Ee----CCeeEEEEeceEEEecCCCC
Q psy7674          52 NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRV--KF----AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        52 ~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v--~v----~~~~~~~~~d~liiAtGs~~  120 (164)
                      +.+++++.+...  |.........+.+.|++.||+++.+ .+..+..  ..+  .+    +++...+.+|.+++|+|.+|
T Consensus       197 G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        197 GAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP  276 (466)
T ss_pred             CCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence            445556554332  2222222344567788899999988 4555532  222  22    13335799999999999998


Q ss_pred             CCC
Q psy7674         121 TYP  123 (164)
Q Consensus       121 ~~p  123 (164)
                      +..
T Consensus       277 n~~  279 (466)
T PRK06115        277 YTQ  279 (466)
T ss_pred             ccc
Confidence            754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=90.70  E-value=1.2  Score=36.10  Aligned_cols=79  Identities=10%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             eEEeeceEec----------CCceEEEeccCCc--ccccc-cchhhHHHHhhcCceEEee-EEEEeeC-cE--EEe-CCe
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSWCP--FCTKA-KENNYEKELEKNKIDYFNA-KAVFVDK-HR--VKF-AGE  103 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~cp--~~~~~-~~~~~~~~l~~~gv~~~~~-~~~~~~~-~~--v~v-~~~  103 (164)
                      .+.|++-.+|          ...++++.+...+  ..... ....+.+.+++.||+++.+ .+..++. ..  +.+ ++ 
T Consensus       147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g-  225 (396)
T PRK09754        147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG-  225 (396)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCC-
Confidence            4556665555          4566776654432  11111 2234556778899999987 4455542 22  333 44 


Q ss_pred             eEEEEeceEEEecCCCCCC
Q psy7674         104 ERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus       104 ~~~~~~d~liiAtGs~~~~  122 (164)
                       +.+.+|.+++|+|.+|+.
T Consensus       226 -~~i~aD~Vv~a~G~~pn~  243 (396)
T PRK09754        226 -ETLQADVVIYGIGISAND  243 (396)
T ss_pred             -CEEECCEEEECCCCChhh
Confidence             579999999999999874

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.70  E-value=1.6  Score=36.49  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             ceEEeeEEEEeeCc-----EEEeCCeeEEEEeceEEEecCCCCCCCCC-----CCc-cceechhhh--ccCcCCCCcEEE
Q psy7674          83 IDYFNAKAVFVDKH-----RVKFAGEERTVSAQNFIIAVGGRPTYPDI-----PGA-HLGITSDDL--FSLNKDPGKVLL  149 (164)
Q Consensus        83 v~~~~~~~~~~~~~-----~v~v~~~~~~~~~d~liiAtGs~~~~p~i-----~g~-~~v~~~~~~--~~~~~~~~~vvV  149 (164)
                      +.+++.+++.+...     ......++....+|-+|+|||-.+..++.     +|. .++-+.-..  ++-.+...+|+|
T Consensus       122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli  201 (474)
T COG4529         122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLI  201 (474)
T ss_pred             eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEE
Confidence            66666666554211     12222222678899999999977655443     333 233332222  222233456999


Q ss_pred             ECCcHHHHHhhcc
Q psy7674         150 VGASYIALECAGC  162 (164)
Q Consensus       150 iGgG~~g~E~A~~  162 (164)
                      +|.|..-++.-..
T Consensus       202 ~GsgLt~~D~v~~  214 (474)
T COG4529         202 VGSGLTSIDQVLV  214 (474)
T ss_pred             ecCCchhHHHHHH
Confidence            9999988776443

>PRK12831 putative oxidoreductase; Provisional

Probab=90.66  E-value=0.15  Score=42.54  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.6

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..++|+|||||+.|+.+|..|
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l  159 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDL  159 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHH
Confidence            457899999999999999776

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=90.64  E-value=0.15  Score=42.31  Aligned_cols=20  Identities=35%  Similarity=0.424  Sum_probs=18.1

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      +++|+|||||+.|+++|..|
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l  152 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASEL  152 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHH
Confidence            47899999999999999876

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=90.38  E-value=0.17  Score=33.81  Aligned_cols=16  Identities=44%  Similarity=0.760  Sum_probs=12.8

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|+++|||+|...+
T Consensus        26 vv~f~a~wC~~C~~~~   41 (113)
T cd02975          26 VVFSSKEGCQYCEVTK   41 (113)
T ss_pred             EEEeCCCCCCChHHHH
Confidence            4556899999999766

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=90.38  E-value=0.17  Score=34.01  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      ++++|+.+.|+.|+.++     .+|+++|++|.
T Consensus         1 ~i~iy~~p~C~~crkA~-----~~L~~~gi~~~   28 (113)
T cd03033           1 DIIFYEKPGCANNARQK-----ALLEAAGHEVE   28 (113)
T ss_pred             CEEEEECCCCHHHHHHH-----HHHHHcCCCcE
Confidence            47899999999999999     89999999983

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=90.21  E-value=1.9  Score=36.24  Aligned_cols=83  Identities=11%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             eEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEeeE-EEEee--Cc--EEEe-CCe-
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KH--RVKF-AGE-  103 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~--~v~v-~~~-  103 (164)
                      .+.|++-.+|          +.+++++.++. .|.....-...+.+.|++.||+++.+. ...+.  ..  .+.+ +++ 
T Consensus       183 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~  262 (484)
T TIGR01438       183 TLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTN  262 (484)
T ss_pred             EEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCc
Confidence            4555665555          45667766542 222222223345677889999999874 33442  22  2333 331 


Q ss_pred             eEEEEeceEEEecCCCCCCCC
Q psy7674         104 ERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       104 ~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ...+.+|.+++|+|.+|+...
T Consensus       263 ~~~i~~D~vl~a~G~~pn~~~  283 (484)
T TIGR01438       263 GIEEEYDTVLLAIGRDACTRK  283 (484)
T ss_pred             ceEEEeCEEEEEecCCcCCCc
Confidence            246999999999999887643

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=90.21  E-value=0.18  Score=30.98  Aligned_cols=26  Identities=19%  Similarity=0.470  Sum_probs=23.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +.+|+.++||+|.+.+     ..|..+|+++
T Consensus         2 ~~Ly~~~~sp~~~kv~-----~~L~~~gi~y   27 (77)
T cd03041           2 LELYEFEGSPFCRLVR-----EVLTELELDV   27 (77)
T ss_pred             ceEecCCCCchHHHHH-----HHHHHcCCcE
Confidence            5689999999999988     7788999988

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=89.99  E-value=0.18  Score=42.03  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.4

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++|+|||||++|+++|..|
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l  160 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADIL  160 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHH
Confidence            357899999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=89.81  E-value=0.31  Score=34.51  Aligned_cols=33  Identities=18%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ...++.|-++|||+|+.... .+.++.+++++.+
T Consensus        51 ~~~lvnFWAsWCppCr~e~P-~L~~l~~~~~~~V   83 (153)
T TIGR02738        51 DYALVFFYQSTCPYCHQFAP-VLKRFSQQFGLPV   83 (153)
T ss_pred             CCEEEEEECCCChhHHHHHH-HHHHHHHHcCCcE
Confidence            34577799999999998752 2223445556655

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=89.45  E-value=0.21  Score=41.64  Aligned_cols=20  Identities=30%  Similarity=0.222  Sum_probs=18.1

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      +++|+|||||+.|+.+|..|
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l  162 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQL  162 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHH
Confidence            47899999999999999876

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=89.37  E-value=0.22  Score=30.00  Aligned_cols=25  Identities=24%  Similarity=0.523  Sum_probs=22.0

Q ss_pred             EEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          56 VIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        56 vv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ++|+..+||+|.+.+     -.++.+|+++
T Consensus         2 ~ly~~~~~p~~~rv~-----~~L~~~gl~~   26 (71)
T cd03060           2 ILYSFRRCPYAMRAR-----MALLLAGITV   26 (71)
T ss_pred             EEEecCCCcHHHHHH-----HHHHHcCCCc
Confidence            578999999999988     7788889987

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PRK10262 thioredoxin reductase; Provisional

Probab=89.30  E-value=2.2  Score=33.49  Aligned_cols=51  Identities=14%  Similarity=0.238  Sum_probs=34.4

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeCc-----EEEe-C----CeeEEEEeceEEEecCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDKH-----RVKF-A----GEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~~-----~v~v-~----~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .+.+.+++.+|+++.+ .+..+...     .+++ +    ++.+.+.+|.+++++|.+|+..
T Consensus       190 ~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~  251 (321)
T PRK10262        190 RLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA  251 (321)
T ss_pred             HHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence            3455677889999886 45555432     2333 2    2234799999999999998754

>PTZ00052 thioredoxin reductase; Provisional

Probab=89.03  E-value=2.7  Score=35.43  Aligned_cols=81  Identities=12%  Similarity=0.205  Sum_probs=49.0

Q ss_pred             eEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEeeE-EEEee--Cc--EEEe-CCee
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KH--RVKF-AGEE  104 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~--~v~v-~~~~  104 (164)
                      .+.|++-.+|          ...++++..+. .+.........+.+.|++.||+++.+. +..+.  ..  .+.+ ++  
T Consensus       185 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g--  262 (499)
T PTZ00052        185 TLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDG--  262 (499)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCC--
Confidence            4555555455          55666665432 112222223455677889999999884 33342  12  2333 44  


Q ss_pred             EEEEeceEEEecCCCCCCCC
Q psy7674         105 RTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       105 ~~~~~d~liiAtGs~~~~p~  124 (164)
                      +.+.+|.+++|+|-+|+...
T Consensus       263 ~~i~~D~vl~a~G~~pn~~~  282 (499)
T PTZ00052        263 TTELFDTVLYATGRKPDIKG  282 (499)
T ss_pred             CEEEcCEEEEeeCCCCCccc
Confidence            56899999999999987653

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=88.95  E-value=0.22  Score=45.46  Aligned_cols=21  Identities=24%  Similarity=0.180  Sum_probs=18.5

Q ss_pred             CCcEEEECCcHHHHHhhcccC
Q psy7674         144 PGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .++|+|||||+.|+.+|..|+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LA  557 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLA  557 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHH
Confidence            368999999999999998763

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=88.93  E-value=0.14  Score=33.52  Aligned_cols=18  Identities=44%  Similarity=1.291  Sum_probs=13.0

Q ss_pred             CceEEEeccCCccccccc
Q psy7674          53 NSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~   70 (164)
                      ..+++|..+|||||....
T Consensus         7 ~~v~~F~~~~C~~C~~~~   24 (112)
T PF13098_consen    7 PIVVVFTDPWCPYCKKLE   24 (112)
T ss_dssp             EEEEEEE-TT-HHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHH
Confidence            357789999999999765

...

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=88.92  E-value=0.24  Score=41.52  Aligned_cols=20  Identities=30%  Similarity=0.222  Sum_probs=18.1

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++++|||+|++|+++|..|
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L  162 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQL  162 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHH
Confidence            47999999999999999876

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=88.74  E-value=0.23  Score=45.26  Aligned_cols=21  Identities=29%  Similarity=0.192  Sum_probs=18.6

Q ss_pred             CCcEEEECCcHHHHHhhcccC
Q psy7674         144 PGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l~  164 (164)
                      +++|+|||||+.|+.+|..|+
T Consensus       539 gKkVaIIGgGPAGLsAA~~La  559 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLA  559 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHH
Confidence            478999999999999998763

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=88.73  E-value=2.4  Score=35.73  Aligned_cols=68  Identities=19%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             ceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEeeC-----cEEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          54 SVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVDK-----HRVKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        54 ~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~-----~~v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .++++.+..  .|.........+.+.|++.||+++.+. +..+..     ..+.+ ++  ..+.+|.+++|+|.+|+..
T Consensus       215 ~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       215 KVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG--KTLDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             eEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC--CEEEcCEEEEeeCCCcCcc
Confidence            566665433  333333334456678889999999874 444531     12333 34  5799999999999888764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.45  E-value=0.27  Score=42.81  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.6

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++|+|||||+.|+.+|..|
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L  346 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVL  346 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            357999999999999999876

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=88.39  E-value=1.6  Score=35.95  Aligned_cols=46  Identities=22%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             hhHHHHhhcCceEEee-EEEEe--eCcE---EEe-CCeeEEEEeceEEEecCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFV--DKHR---VKF-AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~--~~~~---v~v-~~~~~~~~~d~liiAtGs~~  120 (164)
                      .++..+++.|++++.+ ++..+  +...   +.. ++  ..+.+|++|+|||+..
T Consensus       114 ~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  114 ALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--GEYEADAVILATGGKS  166 (409)
T ss_dssp             HHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--EEEEESEEEE----SS
T ss_pred             HHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--ccccCCEEEEecCCCC
Confidence            3566678889999987 45555  2333   333 34  7899999999999765

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=88.20  E-value=0.73  Score=27.64  Aligned_cols=43  Identities=12%  Similarity=0.224  Sum_probs=32.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee-ce
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH-GK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~-~~   48 (164)
                      +..+|+++|+.|+.++++.....    +.+.++...+++|.+..+ |.
T Consensus        15 v~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~vP~L~~~~g~   58 (71)
T cd03060          15 ARMALLLAGITVELREVELKNKP----AEMLAASPKGTVPVLVLGNGT   58 (71)
T ss_pred             HHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCCCCEEEECCCc
Confidence            45678899999999999876322    344567889999999885 55

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PRK07846 mycothione reductase; Reviewed

Probab=88.07  E-value=2.8  Score=34.82  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             ceEEeeceEec----------CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe---CC
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF---AG  102 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v---~~  102 (164)
                      ..+.|++-.++          +.+++++.+...+  .........+.++ .+.+++++.+ ++..++.  ..+.+   ++
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g  246 (451)
T PRK07846        168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTEL-ASKRWDVRLGRNVVGVSQDGSGVTLRLDDG  246 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHH-HhcCeEEEeCCEEEEEEEcCCEEEEEECCC
Confidence            45556665455          5567777764422  2111111223333 3467999877 4555542  23333   34


Q ss_pred             eeEEEEeceEEEecCCCCCCCC
Q psy7674         103 EERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       103 ~~~~~~~d~liiAtGs~~~~p~  124 (164)
                        ..+.+|.+++|+|.+|+...
T Consensus       247 --~~i~~D~vl~a~G~~pn~~~  266 (451)
T PRK07846        247 --STVEADVLLVATGRVPNGDL  266 (451)
T ss_pred             --cEeecCEEEEEECCccCccc
Confidence              57999999999999988654

>KOG3851|consensus

Probab=87.87  E-value=0.13  Score=41.05  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             CceEEeeEEEEee--CcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc
Q psy7674          82 KIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA  128 (164)
Q Consensus        82 gv~~~~~~~~~~~--~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~  128 (164)
                      +..++...+...+  .+++.+.+ ++++.||+||||+|-.-+.--|+|.
T Consensus       106 ~a~wi~ekv~~f~P~~N~v~t~g-g~eIsYdylviA~Giql~y~~IkGl  153 (446)
T KOG3851|consen  106 GATWIKEKVKEFNPDKNTVVTRG-GEEISYDYLVIAMGIQLDYGKIKGL  153 (446)
T ss_pred             CcHHHHHHHHhcCCCcCeEEccC-CcEEeeeeEeeeeeceeccchhcCh
Confidence            4444444443333  45566533 2789999999999987666556665

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=87.85  E-value=0.3  Score=44.39  Aligned_cols=22  Identities=18%  Similarity=-0.041  Sum_probs=19.3

Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+++|+|||||+.|+.+|..|+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~La  326 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLA  326 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHH
Confidence            3589999999999999998763

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=87.71  E-value=0.32  Score=42.37  Aligned_cols=20  Identities=30%  Similarity=0.217  Sum_probs=18.1

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++|+|||||+.|+.+|..|
T Consensus       193 ~k~VaIIGaGpAGl~aA~~L  212 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYL  212 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            47899999999999999876

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=87.65  E-value=3.3  Score=34.26  Aligned_cols=72  Identities=22%  Similarity=0.314  Sum_probs=43.3

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--Cc-EEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH-RVKF---AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~-~v~v---~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +..+.++.+..  .|.........+.+.+++. |+++.+ .+..++  .. .+.+   +++...+.+|.+++|+|.+|+.
T Consensus       192 g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~  270 (460)
T PRK06292        192 GVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT  270 (460)
T ss_pred             CCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence            34556655432  2222222233455667778 999877 445553  21 3443   3433579999999999999887


Q ss_pred             CC
Q psy7674         123 PD  124 (164)
Q Consensus       123 p~  124 (164)
                      ..
T Consensus       271 ~~  272 (460)
T PRK06292        271 DG  272 (460)
T ss_pred             CC
Confidence            63

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=87.57  E-value=2.2  Score=34.38  Aligned_cols=48  Identities=19%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--cE--EEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--HR--VKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~~--v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      .+.+.+++.|++++.+ .+..++.  ..  +.+ ++  ..+.+|.+++|+|.+|+.
T Consensus       188 ~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        188 RLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSG--RSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             HHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCC--cEEECCEEEECcCCCcch
Confidence            3456788899999876 4555542  22  333 44  679999999999998864

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=87.13  E-value=0.33  Score=42.15  Aligned_cols=20  Identities=35%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++|+|||||++|+.+|..|
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L  329 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADIL  329 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHH
Confidence            58999999999999999876

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=87.12  E-value=0.71  Score=27.63  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee-ceEe
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH-GKHI   50 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~-~~~i   50 (164)
                      +..+|..+|+.|+.+.++..+..    ..+ +..+.+.+|.++.+ +..+
T Consensus        15 vr~~L~~~gl~~~~~~~~~~~~~----~~~-~~~~~~~vP~L~~~~~~~l   59 (71)
T cd03037          15 ARMIAGLKNIPVEQIILQNDDEA----TPI-RMIGAKQVPILEKDDGSFM   59 (71)
T ss_pred             HHHHHHHcCCCeEEEECCCCchH----HHH-HhcCCCccCEEEeCCCeEe
Confidence            45678899999999988754321    122 35688899999886 5533

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=86.95  E-value=0.38  Score=42.55  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++|+|||||+.|+.+|..|
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l  450 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDL  450 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHH
Confidence            357899999999999999876

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=86.80  E-value=0.52  Score=39.21  Aligned_cols=22  Identities=14%  Similarity=0.016  Sum_probs=18.1

Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ...-+|+|||||+.|.-+|..|
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~L   58 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETL   58 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHH
Confidence            3335799999999999999765

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=86.79  E-value=1.1  Score=27.47  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEe
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFI   45 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i   45 (164)
                      |..+|++.++.|+.++++..   ......+.++.+.+.+|.+..
T Consensus        16 v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~~p~~~vP~l~~   56 (77)
T cd03041          16 VREVLTELELDVILYPCPKG---SPKRDKFLEKGGKVQVPYLVD   56 (77)
T ss_pred             HHHHHHHcCCcEEEEECCCC---hHHHHHHHHhCCCCcccEEEe
Confidence            45678899999999988643   333345666789999998755

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=86.68  E-value=0.37  Score=28.89  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=22.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +.+|+..+||||.+.+     -.|..+|+++
T Consensus         1 ~~Ly~~~~~p~~~rvr-----~~L~~~gl~~   26 (71)
T cd03037           1 MKLYIYEHCPFCVKAR-----MIAGLKNIPV   26 (71)
T ss_pred             CceEecCCCcHhHHHH-----HHHHHcCCCe
Confidence            3578889999999888     7788889987

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=86.43  E-value=0.3  Score=32.81  Aligned_cols=17  Identities=41%  Similarity=1.024  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        17 vlv~f~a~wC~~C~~~~   33 (125)
T cd02951          17 LLLLFSQPGCPYCDKLK   33 (125)
T ss_pred             EEEEEeCCCCHHHHHHH
Confidence            46679999999999865

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=86.33  E-value=0.44  Score=28.55  Aligned_cols=27  Identities=7%  Similarity=0.134  Sum_probs=23.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      +++|+.++||+|.+.+     -.++..|+++.
T Consensus         1 ~~ly~~~~~~~~~~v~-----~~l~~~gi~~~   27 (73)
T cd03059           1 MTLYSGPDDVYSHRVR-----IVLAEKGVSVE   27 (73)
T ss_pred             CEEEECCCChhHHHHH-----HHHHHcCCccE
Confidence            4689999999999988     77888999873

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=86.29  E-value=0.43  Score=40.75  Aligned_cols=21  Identities=19%  Similarity=0.145  Sum_probs=18.4

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..++|+|||+|++|+.+|..|
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l  156 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHL  156 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            458999999999999999765

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=86.20  E-value=0.83  Score=31.90  Aligned_cols=32  Identities=19%  Similarity=0.357  Sum_probs=20.7

Q ss_pred             eEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      ++.+..+|||+|...-.  ..+.+.++..|+.++
T Consensus        26 vv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~   59 (153)
T TIGR02540        26 LVVNVASECGFTDQNYRALQELHRELGPSHFNVL   59 (153)
T ss_pred             EEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEE
Confidence            45588999999988642  233344455577764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=86.13  E-value=0.74  Score=27.64  Aligned_cols=46  Identities=15%  Similarity=0.296  Sum_probs=33.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      +..+|+++|+.|+.+.++.... ...++.+.++...+.+|.+..++.
T Consensus        15 v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~   60 (74)
T cd03045          15 VLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGF   60 (74)
T ss_pred             HHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEEEECCE
Confidence            4568899999999999986543 333455556778889999976654

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>KOG2495|consensus

Probab=86.02  E-value=2.2  Score=35.41  Aligned_cols=49  Identities=18%  Similarity=0.237  Sum_probs=38.9

Q ss_pred             hHHHHhhcCceEEeeEE-EEeeCcEEEe---CCeeEEEEeceEEEecCCCCCC
Q psy7674          74 YEKELEKNKIDYFNAKA-VFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~-~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      -++++.+.+|++..++. ..++++++.+   +|+.+.++|--|+.|||..|+.
T Consensus       279 ae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp  331 (491)
T KOG2495|consen  279 AENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP  331 (491)
T ss_pred             HHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence            35678889999999955 4577777766   5666789999999999988763

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=85.98  E-value=2.6  Score=34.61  Aligned_cols=48  Identities=21%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeCc--E--EEeCCeeEEEEeceEEEecCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDKH--R--VKFAGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~~--~--v~v~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      .+.+.+++.||+++.+ ++..++..  .  +..++  ..+.+|.+++|+|.+|+.
T Consensus       196 ~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~--~~i~~d~vi~a~G~~p~~  248 (444)
T PRK09564        196 VMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK--GEYEADVVIVATGVKPNT  248 (444)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC--CEEEcCEEEECcCCCcCH
Confidence            4556788899999877 45555422  1  22244  469999999999988864

>PLN02546 glutathione reductase

Probab=85.52  E-value=4.8  Score=34.60  Aligned_cols=83  Identities=10%  Similarity=0.157  Sum_probs=48.3

Q ss_pred             ceEEeeceEec----------CCceEEEeccCC--cccccccchhhHHHHhhcCceEEeeE-EEEee---CcEEEe-CCe
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNAK-AVFVD---KHRVKF-AGE  103 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~---~~~v~v-~~~  103 (164)
                      ..+.|++-.++          ...++++.+...  +.........+.+.|++.||+++.+. +..+.   ...+.+ .++
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~  333 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNK  333 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECC
Confidence            44555555455          456677765432  22222223345577888999999873 44442   233333 121


Q ss_pred             eEEEEeceEEEecCCCCCCC
Q psy7674         104 ERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus       104 ~~~~~~d~liiAtGs~~~~p  123 (164)
                      .....+|.+++|+|.+|+..
T Consensus       334 g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        334 GTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             eEEEecCEEEEeeccccCCC
Confidence            23445899999999998764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=85.41  E-value=0.45  Score=43.55  Aligned_cols=20  Identities=30%  Similarity=0.292  Sum_probs=18.0

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++|+|||||+.|+.+|..|
T Consensus       430 ~~kVaIIG~GPAGLsaA~~L  449 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADL  449 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHH
Confidence            36899999999999999876

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=84.80  E-value=0.61  Score=26.90  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             EEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          56 VIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        56 vv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      .+|..++||+|.+..     ..++.+++++.
T Consensus         2 ~ly~~~~~~~~~~~~-----~~l~~~~i~~~   27 (71)
T cd00570           2 KLYYFPGSPRSLRVR-----LALEEKGLPYE   27 (71)
T ss_pred             EEEeCCCCccHHHHH-----HHHHHcCCCcE
Confidence            578889999999888     77888899873

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=84.78  E-value=0.75  Score=27.39  Aligned_cols=45  Identities=20%  Similarity=0.249  Sum_probs=32.1

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHG   47 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~   47 (164)
                      +..+|+++++.|+.++++...+ ....+.+.++...+.+|.+.+++
T Consensus        15 ~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~   59 (74)
T cd03051          15 VRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDD   59 (74)
T ss_pred             HHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEEEeCC
Confidence            3467888999999999876432 22233466678899999998743

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=84.68  E-value=0.94  Score=28.65  Aligned_cols=43  Identities=21%  Similarity=0.337  Sum_probs=32.4

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEee-ce
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIH-GK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~-~~   48 (164)
                      +..+|++.++.|+.++++....    ++.+.+....+.+|.+.++ |.
T Consensus        33 v~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~   76 (89)
T cd03055          33 ARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGK   76 (89)
T ss_pred             HHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCC
Confidence            4567889999999999876532    2445567788999999987 54

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=84.64  E-value=5.9  Score=33.07  Aligned_cols=72  Identities=15%  Similarity=0.167  Sum_probs=41.4

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CC--eeEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AG--EERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~--~~~~~~~d~liiAtGs~~~  121 (164)
                      +.+++++....  .|.........+.+.+++. ++++.+ .+..+.  ...+.+   ++  +...+.+|.+++|+|.+|+
T Consensus       197 G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn  275 (471)
T PRK06467        197 GSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN  275 (471)
T ss_pred             CCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence            44555655433  3332222233455667677 998887 444443  223322   22  1246999999999999987


Q ss_pred             CCC
Q psy7674         122 YPD  124 (164)
Q Consensus       122 ~p~  124 (164)
                      ...
T Consensus       276 ~~~  278 (471)
T PRK06467        276 GKL  278 (471)
T ss_pred             CCc
Confidence            653

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=84.63  E-value=0.73  Score=31.66  Aligned_cols=32  Identities=34%  Similarity=0.707  Sum_probs=20.9

Q ss_pred             eEEEecc-CCcccccccc--hhhHHHHhhcCceEE
Q psy7674          55 VVIFSKS-WCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~-~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      ++.|-.+ |||+|.....  ..+.+.++..+++++
T Consensus        32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v   66 (146)
T PF08534_consen   32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVV   66 (146)
T ss_dssp             EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEE
Confidence            4446667 9999998763  223344566778774

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PTZ00256 glutathione peroxidase; Provisional

Probab=84.55  E-value=1  Score=32.67  Aligned_cols=30  Identities=7%  Similarity=0.160  Sum_probs=19.4

Q ss_pred             EEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          57 IFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        57 v~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      ++-.+|||+|.....  ..+.+.+++.|+.++
T Consensus        47 ~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv   78 (183)
T PTZ00256         47 VNVACKCGLTSDHYTQLVELYKQYKSQGLEIL   78 (183)
T ss_pred             EEECCCCCchHHHHHHHHHHHHHHhhCCcEEE
Confidence            457899999997642  223344556677764

>TIGR03452 mycothione_red mycothione reductase

Probab=84.50  E-value=7.6  Score=32.24  Aligned_cols=81  Identities=21%  Similarity=0.240  Sum_probs=46.5

Q ss_pred             ceEEeeceEec----------CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CC
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AG  102 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~  102 (164)
                      ..+.|++-.++          +.+++++.+...+  .........+.+.+ +.+++++.+ ++..++  ...+.+   ++
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g  249 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDG  249 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCC
Confidence            34555554455          4567777754432  21222222233333 458999876 455553  223333   34


Q ss_pred             eeEEEEeceEEEecCCCCCCCC
Q psy7674         103 EERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       103 ~~~~~~~d~liiAtGs~~~~p~  124 (164)
                        +.+.+|.+++|+|.+|+...
T Consensus       250 --~~i~~D~vl~a~G~~pn~~~  269 (452)
T TIGR03452       250 --STVTADVLLVATGRVPNGDL  269 (452)
T ss_pred             --CEEEcCEEEEeeccCcCCCC
Confidence              57999999999999987643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=84.45  E-value=3.8  Score=31.90  Aligned_cols=46  Identities=15%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--CcEEE-e--CCeeEEEEeceEEEecCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--KHRVK-F--AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~-v--~~~~~~~~~d~liiAtGs~~  120 (164)
                      .+.+.+++.|++++.+ ++..++  ...+. +  ++  ..+.+|.+|+|+|...
T Consensus       152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~--g~i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  152 ALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSD--GEIRADRVVLAAGAWS  203 (358)
T ss_dssp             HHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETT--EEEEECEEEE--GGGH
T ss_pred             hhHHHHHHhhhhccccccccchhhcccccccccccc--cccccceeEecccccc
Confidence            4556677889999999 676664  44443 3  33  3499999999999753

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=84.44  E-value=5.4  Score=33.06  Aligned_cols=48  Identities=15%  Similarity=0.244  Sum_probs=33.0

Q ss_pred             hhhHHHHhhcCceEEee-EEEEee--CcEEE---eCC-eeEEEEeceEEEecCCC
Q psy7674          72 NNYEKELEKNKIDYFNA-KAVFVD--KHRVK---FAG-EERTVSAQNFIIAVGGR  119 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~---v~~-~~~~~~~d~liiAtGs~  119 (164)
                      ..+.+.++++|++++.+ ++..+.  ...++   .++ ....+.+|.+|+|||+-
T Consensus       267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       267 EALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            34677888999999988 555543  33222   222 12479999999999987

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=84.42  E-value=0.51  Score=39.69  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=18.4

Q ss_pred             CCcEEEECCcHHHHHhhcccC
Q psy7674         144 PGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .++++|||||..|+++|..|+
T Consensus       124 ~~svLVIGGGvAGitAAl~La  144 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELA  144 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHH
Confidence            479999999999999997763

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=84.35  E-value=1.1  Score=26.55  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      +..++.+.++.|+.++++..+. ....+.+.++...+.+|.+..+|.
T Consensus        15 v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~   60 (73)
T cd03056          15 VRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGR   60 (73)
T ss_pred             HHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCE
Confidence            4567888999999999986432 223344555777889999988765

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=84.12  E-value=0.75  Score=29.35  Aligned_cols=17  Identities=12%  Similarity=0.298  Sum_probs=14.4

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .+.+|..+|||||....
T Consensus        15 ~i~~F~~~~C~~C~~~~   31 (89)
T cd03026          15 NFETYVSLSCHNCPDVV   31 (89)
T ss_pred             EEEEEECCCCCCcHHHH
Confidence            46778999999999876

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PTZ00056 glutathione peroxidase; Provisional

Probab=83.73  E-value=1.1  Score=33.14  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=19.8

Q ss_pred             eEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      ++.|-.+|||+|.....  ..+.+.+++.|+.++
T Consensus        43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vv   76 (199)
T PTZ00056         43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEIL   76 (199)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEE
Confidence            44477899999986531  223344455677664

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=83.38  E-value=0.96  Score=30.40  Aligned_cols=33  Identities=12%  Similarity=0.244  Sum_probs=19.3

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|-.+|||+|......  .+.+.+++.++.++
T Consensus        26 vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi   60 (126)
T cd03012          26 VLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVI   60 (126)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEE
Confidence            3455778999999976421  22333344456554

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=83.34  E-value=0.76  Score=40.23  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             CCCCcEEEECCcHHHHHhhcccC
Q psy7674         142 KDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      +.+.+|+|||||..|+-+|..|+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~  101 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAK  101 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHH
Confidence            44578999999999999998773

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=83.09  E-value=4.5  Score=28.37  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             ceEEeeEEEEeeC----cEEEe-CCeeEEEEeceEEEecCC
Q psy7674          83 IDYFNAKAVFVDK----HRVKF-AGEERTVSAQNFIIAVGG  118 (164)
Q Consensus        83 v~~~~~~~~~~~~----~~v~v-~~~~~~~~~d~liiAtGs  118 (164)
                      |.++..+++.++.    ..+.+ ++  ..+.+|++++|||-
T Consensus       117 v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  117 VRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLATGH  155 (156)
T ss_pred             EEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEECCCC
Confidence            4445566666642    22333 55  67899999999994

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=83.09  E-value=3.5  Score=37.22  Aligned_cols=48  Identities=15%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             hhHHHHhhcCceEEeeE-EEEeeC----c--EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNAK-AVFVDK----H--RVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~-~~~~~~----~--~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      .+.+.+++.||+++.+. +..+..    .  .+.+ ++  +.+.+|.+++|+|.+|+.
T Consensus       192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG--~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG--SELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC--CEEEcCEEEECCCcccCc
Confidence            45677889999999884 444531    1  2333 45  679999999999999875

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=83.08  E-value=1.2  Score=24.47  Aligned_cols=16  Identities=44%  Similarity=1.373  Sum_probs=13.6

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      +++|..+||++|....
T Consensus         1 l~~~~~~~c~~c~~~~   16 (69)
T cd01659           1 LVLFYAPWCPFCQALR   16 (69)
T ss_pred             CEEEECCCChhHHhhh
Confidence            3678889999999987

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=82.70  E-value=0.65  Score=39.23  Aligned_cols=19  Identities=16%  Similarity=0.013  Sum_probs=17.1

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      -.|+|||||.+|+-+|..|
T Consensus        46 ~DVvIIGGGI~G~a~A~~L   64 (497)
T PTZ00383         46 YDVVIVGGGVTGTALFYTL   64 (497)
T ss_pred             ccEEEECccHHHHHHHHHH
Confidence            5799999999999999776

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=82.62  E-value=5.7  Score=30.30  Aligned_cols=48  Identities=27%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             HHHHhhc-CceEEee-EEEEeeCc----EEEe----CCeeEEEEeceEEEecCCCCCC
Q psy7674          75 EKELEKN-KIDYFNA-KAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        75 ~~~l~~~-gv~~~~~-~~~~~~~~----~v~v----~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      .+.+++. |++++.+ ....++..    .+.+    +++...+.+|.+++|||.+|..
T Consensus       183 ~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~  240 (300)
T TIGR01292       183 LDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT  240 (300)
T ss_pred             HHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCCh
Confidence            4556666 9999877 44555422    1333    2334679999999999988765

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=82.61  E-value=0.85  Score=27.14  Aligned_cols=26  Identities=15%  Similarity=0.245  Sum_probs=22.1

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +.+|..++||+|.+..     -.++.+|+++
T Consensus         1 ~~Ly~~~~s~~~~~~~-----~~L~~~~l~~   26 (74)
T cd03051           1 MKLYDSPTAPNPRRVR-----IFLAEKGIDV   26 (74)
T ss_pred             CEEEeCCCCcchHHHH-----HHHHHcCCCc
Confidence            3678999999999988     6788889887

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=82.61  E-value=1.4  Score=26.84  Aligned_cols=46  Identities=9%  Similarity=0.065  Sum_probs=34.0

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      |.++|.++|+.|+.++++.... ......+.++...+.+|....+|.
T Consensus        15 v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~inP~g~vP~L~~~g~   60 (73)
T cd03052          15 VRLVIAEKGLRCEEYDVSLPLS-EHNEPWFMRLNPTGEVPVLIHGDN   60 (73)
T ss_pred             HHHHHHHcCCCCEEEEecCCcC-ccCCHHHHHhCcCCCCCEEEECCE
Confidence            4567899999999999876532 223445777889999998876554

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=82.45  E-value=1.2  Score=27.11  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=24.8

Q ss_pred             cCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           6 TAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         6 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      .++.+.++.+..+|...+....     +..|-+++|+++++|+
T Consensus        25 ~~~~~~~~~~~~vd~~~~~~~~-----~~~~v~~vPt~~~~g~   62 (82)
T TIGR00411        25 AKEMGDAVEVEYINVMENPQKA-----MEYGIMAVPAIVINGD   62 (82)
T ss_pred             HHHhcCceEEEEEeCccCHHHH-----HHcCCccCCEEEECCE
Confidence            3444555777777766443322     2358889999999875

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=82.43  E-value=1.3  Score=32.31  Aligned_cols=31  Identities=19%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .++.|..+|||+|+.... .+.+..++.++++
T Consensus        77 vvl~F~atwCp~C~~~lp-~l~~~~~~~~~~v  107 (189)
T TIGR02661        77 TLLMFTAPSCPVCDKLFP-IIKSIARAEETDV  107 (189)
T ss_pred             EEEEEECCCChhHHHHHH-HHHHHHHhcCCcE
Confidence            455588999999997642 2223334445554

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=82.36  E-value=0.51  Score=30.55  Aligned_cols=17  Identities=29%  Similarity=0.780  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+||++|....
T Consensus        14 vlv~f~a~wC~~C~~~~   30 (104)
T cd02953          14 VFVDFTADWCVTCKVNE   30 (104)
T ss_pred             EEEEEEcchhHHHHHHH
Confidence            45679999999999865

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR02740 TraF-like TraF-like protein

Probab=82.35  E-value=1.5  Score=34.08  Aligned_cols=32  Identities=22%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      .++.|.++|||+|..... .+..+.+++++.++
T Consensus       169 ~Lv~F~AswCp~C~~~~P-~L~~la~~yg~~Vi  200 (271)
T TIGR02740       169 GLFFFFKSDCPYCHQQAP-ILQAFEDRYGIEVL  200 (271)
T ss_pred             EEEEEECCCCccHHHHhH-HHHHHHHHcCcEEE
Confidence            466788999999987642 23345556677663

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG3855|consensus

Probab=81.23  E-value=0.97  Score=37.26  Aligned_cols=18  Identities=28%  Similarity=0.405  Sum_probs=16.5

Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      .|+|+|||++|.-+|+.|
T Consensus        38 dVvIvGgGpvg~aLAa~l   55 (481)
T KOG3855|consen   38 DVVIVGGGPVGLALAAAL   55 (481)
T ss_pred             CEEEECCchHHHHHHHHh
Confidence            599999999999999876

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=81.05  E-value=1.2  Score=32.34  Aligned_cols=31  Identities=19%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      .++.|-.+|||+|+..... + ..+.+.+++++
T Consensus        71 vvv~FwatwC~~C~~e~p~-l-~~l~~~~~~vi  101 (185)
T PRK15412         71 VLLNVWATWCPTCRAEHQY-L-NQLSAQGIRVV  101 (185)
T ss_pred             EEEEEECCCCHHHHHHHHH-H-HHHHHcCCEEE
Confidence            4555889999999876522 2 22344577664

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=80.86  E-value=1  Score=29.15  Aligned_cols=16  Identities=38%  Similarity=0.943  Sum_probs=13.4

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|..+|||+|+...
T Consensus        19 lv~f~a~wC~~C~~~~   34 (104)
T cd03000          19 LVDFYAPWCGHCKKLE   34 (104)
T ss_pred             EEEEECCCCHHHHhhC
Confidence            4568899999999876

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=80.64  E-value=0.9  Score=39.60  Aligned_cols=20  Identities=10%  Similarity=0.039  Sum_probs=17.6

Q ss_pred             CcEEEECCcHHHHHhhcccC
Q psy7674         145 GKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+|+|||||.+|+-+|..|+
T Consensus       261 ~dVvIIGaGIaG~s~A~~La  280 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALA  280 (662)
T ss_pred             CCEEEECccHHHHHHHHHHH
Confidence            47999999999999998763

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=80.60  E-value=1.7  Score=25.84  Aligned_cols=46  Identities=24%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      +..++.+.++.|+.++++..+. ....+.+.++...+.+|.+..++.
T Consensus        15 ~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~   60 (73)
T cd03042          15 VRIALNLKGLDYEYVPVNLLKG-EQLSPAYRALNPQGLVPTLVIDGL   60 (73)
T ss_pred             HHHHHHHcCCCCeEEEecCccC-CcCChHHHHhCCCCCCCEEEECCE
Confidence            3467888999999999886532 222244555778899998876655

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>PLN02463 lycopene beta cyclase

Probab=80.59  E-value=7.6  Score=32.40  Aligned_cols=48  Identities=19%  Similarity=0.100  Sum_probs=33.1

Q ss_pred             hHHHHhhcCceEEeeEEEEee--Cc--EEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~--~~--~v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+.+.+.|++++.+++..++  ..  .+.+ ++  ..+.+|.+|.|+|.++...
T Consensus       120 Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~~s~l~  172 (447)
T PLN02463        120 MLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGFSRCLV  172 (447)
T ss_pred             HHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCCCcCcc
Confidence            444556679999877776664  22  2333 44  5799999999999887643

>PLN02412 probable glutathione peroxidase

Probab=80.49  E-value=1.9  Score=30.70  Aligned_cols=33  Identities=9%  Similarity=0.151  Sum_probs=21.9

Q ss_pred             ceEEEeccCCccccccc--chhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAK--ENNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~--~~~~~~~l~~~gv~~~   86 (164)
                      .++.|-.+|||+|+...  -..+.+.+++.|+.++
T Consensus        32 vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vv   66 (167)
T PLN02412         32 LLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEIL   66 (167)
T ss_pred             EEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEE
Confidence            34447789999999753  2234455666777764

>PLN02697 lycopene epsilon cyclase

Probab=80.04  E-value=0.98  Score=38.48  Aligned_cols=19  Identities=16%  Similarity=0.205  Sum_probs=16.9

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      -.|+|||||+.|+.+|..|
T Consensus       109 ~DVvIVGaGPAGLalA~~L  127 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAES  127 (529)
T ss_pred             ccEEEECcCHHHHHHHHHH
Confidence            4799999999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		7e-24
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		7e-24
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		7e-24
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		9e-19
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		1e-18
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		2e-17
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		2e-17
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		2e-17
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		3e-16
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		3e-16
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		4e-16
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		4e-16
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		2e-15
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		4e-15
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		4e-15
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		9e-15
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		1e-13
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		9e-13
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		3e-10
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		3e-10
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		3e-10
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		3e-10
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		3e-10
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		3e-10
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		3e-10
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		3e-10
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		3e-10
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		3e-10
3ctf_A	129	Crystal Structure Of Oxidized Grx2 Length = 129		3e-09
3d5j_A	112	Structure Of Yeast Grx2-C30s Mutant With Glutathion		3e-09
3d4m_A	109	Glutaredoxin 2 Oxidized Structure Length = 109		3e-09
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		1e-08
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		5e-08
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		9e-08
2e7p_A	116	Crystal Structure Of The Holo Form Of Glutaredoxin		1e-07
1z7p_A	117	Solution Structure Of Reduced Glutaredoxin C1 From		2e-07
3c1r_A	118	Crystal Structure Of Oxidized Grx1 Length = 118		2e-07
2jac_A	110	Glutaredoxin Grx1p C30s Mutant From Yeast Length =		3e-07
2jad_A	362	Yellow Fluorescent Protein - Glutaredoxin Fusion Pr		4e-07
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		5e-07
2ht9_A	146	The Structure Of Dimeric Human Glutaredoxin 2 Lengt		3e-06
2fls_A	132	Crystal Structure Of Human Glutaredoxin 2 Complexed		4e-06
2cq9_A	130	Solution Structure Of Rsgi Ruh-044, An N-Terminal D		5e-06
3rhb_A	113	Crystal Structure Of The Apo Form Of Glutaredoxin C		6e-06
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		7e-06
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		7e-06
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		1e-05
3fz9_A	112	Crystal Structure Of Poplar Glutaredoxin S12 In Com		1e-05
3h8q_A	114	Crystal Structure Of Glutaredoxin Domain Of Human T		3e-05
3ic9_A	492	The Structure Of Dihydrolipoamide Dehydrogenase Fro		4e-05
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		5e-05
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		5e-05
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		5e-05
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		8e-05
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		8e-05
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		9e-05
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		9e-05
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		2e-04

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 83  IDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS 139
           ++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GITSDDLFS
Sbjct: 123 VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFS 182
Query: 140 LNKDPGKVLLVGASYIALECAG 161
           L+++PGK L+VGA YI LECAG
Sbjct: 183 LDREPGKTLVVGAGYIGLECAG 204

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 83  IDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS 139
           ++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GITSDDLFS
Sbjct: 123 VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFS 182
Query: 140 LNKDPGKVLLVGASYIALECAG 161
           L+++PGK L+VGA YI LECAG
Sbjct: 183 LDREPGKTLVVGAGYIGLECAG 204

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 83  IDYFNAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFS 139
           ++Y N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA   GITSDDLFS
Sbjct: 119 VEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFS 178
Query: 140 LNKDPGKVLLVGASYIALECAG 161
           L+++PGK L+VGA YI LECAG
Sbjct: 179 LDREPGKTLVVGAGYIGLECAG 200

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Query: 83  IDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP-DIPGA-HLGITSDDL 137
           + YFN KA FVD+H V+     G+   +SA++ +IA GGRP YP  + GA   GITSDD+
Sbjct: 145 VKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDI 204
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PGK L+VGASY+ALECAG
Sbjct: 205 FWLKESPGKTLVVGASYVALECAG 228

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Query: 83  IDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP-DIPGA-HLGITSDDL 137
           + YFN KA FVD+H V+     G+   +SA++ +IA GGRP YP  + GA   GITSDD+
Sbjct: 119 VKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDI 178
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PGK L+VGASY+ALECAG
Sbjct: 179 FWLKESPGKTLVVGASYVALECAG 202

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 83  IDYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLF 138
           + Y NAK   +  H V+   + +   T++    I+A G RP YP+IPGA   GITSDDLF
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 139 SLNKDPGKVLLVGASYIALECAG 161
           SL   PGK L++GASY+ALECAG
Sbjct: 281 SLPYFPGKTLVIGASYVALECAG 303

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 83  IDYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLF 138
           + Y NAK   +  H V+   + +   T++    I+A G RP YP+IPGA   GITSDDLF
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 139 SLNKDPGKVLLVGASYIALECAG 161
           SL   PGK L++GASY+ALECAG
Sbjct: 281 SLPYFPGKTLVIGASYVALECAG 303

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 83  IDYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLF 138
           + Y NAK   +  H V+   + +   T++    I+A G RP YP+IPGA   GITSDDLF
Sbjct: 221 VTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLF 280
Query: 139 SLNKDPGKVLLVGASYIALECAG 161
           SL   PGK L++GASY+ALECAG
Sbjct: 281 SLPYFPGKTLVIGASYVALECAG 303

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85  YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
           Y NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG     I+SDDLFSL
Sbjct: 141 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 200
Query: 141 NKDPGKVLLVGASYIALECAG 161
              PGK L+VGASY+ALECAG
Sbjct: 201 PYCPGKTLVVGASYVALECAG 221

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85  YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
           Y NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG     I+SDDLFSL
Sbjct: 147 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 206
Query: 141 NKDPGKVLLVGASYIALECAG 161
              PGK L+VGASY+ALECAG
Sbjct: 207 PYCPGKTLVVGASYVALECAG 227

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85  YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
           Y NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG     I+SDDLFSL
Sbjct: 147 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 206
Query: 141 NKDPGKVLLVGASYIALECAG 161
              PGK L+VGASY+ALECAG
Sbjct: 207 PYCPGKTLVVGASYVALECAG 227

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 85  YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
           Y NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG     I+SDDLFSL
Sbjct: 149 YENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 208
Query: 141 NKDPGKVLLVGASYIALECAG 161
              PGK L+VGASY+ALECAG
Sbjct: 209 PYCPGKTLVVGASYVALECAG 229

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 83  IDYFNAKAVFVDKHRVKF-----AGEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSD 135
           + Y N  A   DK+ V +       +E TV+ +  +IA G RP  PD + GA  L ITSD
Sbjct: 155 VKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITSD 214
Query: 136 DLFSLNKDPGKVLLVGASYIALECAG 161
           D+FSL KDPGK L+VGASY+ALEC+G
Sbjct: 215 DIFSLKKDPGKTLVVGASYVALECSG 240

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 85  YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
           Y NA   F+  H++      G+E+  SA+ F+IA G RP Y  IPG     I+SDDLFSL
Sbjct: 127 YENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 186
Query: 141 NKDPGKVLLVGASYIALECAG 161
              PGK L+VGASY+ALECAG
Sbjct: 187 PYCPGKTLVVGASYVALECAG 207

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 85  YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG-AHLGITSDDLFSL 140
           Y NA   F+  H++      G+E+  SA+ F+IA G RP Y  IPG     I+SDDLFSL
Sbjct: 127 YENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 186
Query: 141 NKDPGKVLLVGASYIALECAG 161
              PGK L+VGASY+ALECAG
Sbjct: 187 PYCPGKTLVVGASYVALECAG 207

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 83  IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK 142
           I   +  A FVD H ++  G+   +SA + +IA GGRP  P +PGA LGITSD  F+L +
Sbjct: 107 ITRVDGHARFVDAHTIEVEGQR--LSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQ 164
Query: 143 DPGKVLLVGASYIALECAGC 162
            P +V ++GA YI +E AG 
Sbjct: 165 QPKRVAIIGAGYIGIELAGL 184

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 83  IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK 142
           +D     A FVD   ++  GE  T++A + +IA GGRP++PDIPG   GI SD  F+L  
Sbjct: 108 VDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPA 165
Query: 143 DPGKVLLVGASYIALECAG 161
            P +V +VGA YIA+E AG
Sbjct: 166 LPERVAVVGAGYIAVELAG 184

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 83  IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK 142
           +D     A FVD   ++  GE  T++A + +IA GGRP++PDIPG   GI SD  F+L  
Sbjct: 108 VDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPA 165
Query: 143 DPGKVLLVGASYIALECAG 161
            P +V +VGA YI +E  G
Sbjct: 166 LPERVAVVGAGYIGVELGG 184

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 124 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 181
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 182 FQLEELPGRSVIVGAGYIAVEMAG 205

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 106 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 163
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 164 FQLEELPGRSVIVGAGYIAVEMAG 187

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 106 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 163
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 164 FQLEELPGRSVIVGAGYIAVEMAG 187

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 122 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 179
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 180 FQLEELPGRSVIVGAGYIAVEMAG 203

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 83  IDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDL 137
           I+     A F    K  ++ +G++ T  A + +IA GG P+ P    IPGA LGITSD  
Sbjct: 123 IEIIRGHAAFTSDPKPTIEVSGKKYT--APHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 138 FSLNKDPGKVLLVGASYIALECAG 161
           F L + PG+ ++VGA YIA+E AG
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAG 204

>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2 Length = 129

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 9   PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
           P     V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI  NS
Sbjct: 64  PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNS 109

>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl Mixed Disulfide Length = 112

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 9  PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
          P     V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI  NS
Sbjct: 47 PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNS 92

>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure Length = 109

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 9  PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS 54
          P     V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI  NS
Sbjct: 44 PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNS 89

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 108 SAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
           SA + ++A GG+  +P+ IPG  LG  SD  F L + P KV++VGA YI +E AG 
Sbjct: 148 SANHILVATGGKAIFPENIPGFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGV 203

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 83  IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAHLGITSDDLFSLN 141
           +  + ++AVFVD+H ++ +     +SA+  +IA G +  +   I G+ L +TS+++F L 
Sbjct: 129 VHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIFDLE 188
Query: 142 KDPGKVLLVGASYIALECA 160
           K P  +++VG  YI +E A
Sbjct: 189 KLPKSIVIVGGGYIGVEFA 207

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 84  DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNK 142
           +  + +A     + VK     +TV+A+  +IAVGG P+  D +PG  L ITS++ F L  
Sbjct: 109 EILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPA 168
Query: 143 DPGKVLLVGASYIALECA 160
            P  +L+ G  YIA+E A
Sbjct: 169 LPESILIAGGGYIAVEFA 186

>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 116

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVI 57
          +++VVELD+L +G+Q+Q+AL   TG+ TVPN+FI GK I     V+
Sbjct: 46 SYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVV 91

>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 117

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVI 57
          +++VVELD+L +G+Q+Q+AL   TG+ TVPN+FI GK I     V+
Sbjct: 47 SYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVV 92

>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1 Length = 118

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 9  PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53
          P     V++L+ +  GA IQ AL+E  GQ+TVPNI+I+GKHI  N
Sbjct: 52 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGN 96

>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast Length = 110

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 9  PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53
          P     V++L+ +  GA IQ AL+E  GQ+TVPNI+I+GKHI  N
Sbjct: 44 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGN 88

>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein Length = 362

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 9   PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN 53
           P     V++L+ +  GA IQ AL+E  GQ+TVPNI+I+GKHI  N
Sbjct: 288 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGN 332

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 83  IDYFNAKAVFVDKHRVKFAG------------EERTVSAQNFIIAVGGRPTYPDIPGAHL 130
           +D +   A F+ ++R+   G             E  +  +N +IAVG +P +P + G   
Sbjct: 104 VDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIEN 163
Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALE 158
            I+SD+ F++ K+  K+ +VG+ YIA+E
Sbjct: 164 TISSDEFFNI-KESKKIGIVGSGYIAVE 190

>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2 Length = 146

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12  NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           N++VVELD L  G Q Q AL++ TG++TVP IF++G  I
Sbjct: 75  NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 113

>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With Glutathione Length = 132

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          N++VVELD L  G Q Q AL++ TG++TVP IF++G  I
Sbjct: 61 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 99

>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain Of Glutaredoxin 2 From Human Cdna Length = 130

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          N++VVELD L  G Q Q AL++ TG++TVP IF++G  I
Sbjct: 53 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 91

>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From Arabidopsis Thaliana Length = 113

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 15 VVELDKL-PNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          VVELD+L P G Q+Q  L   TGQ TVPN+F+ GKHI
Sbjct: 48 VVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHI 84

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 87  NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGK 146
           +A  V V K     +    T+  +  +IA G  PT   +PG    ITS++ F L   P +
Sbjct: 151 DAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPKR 210
Query: 147 VLLVGASYIALECAG 161
           +L VG  YIA+E AG
Sbjct: 211 MLCVGGGYIAVEFAG 225

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 87  NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGK 146
           +A  V V K     +    T+  +  +IA G  PT   +PG    ITS++ F L   P +
Sbjct: 151 DAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPKR 210
Query: 147 VLLVGASYIALECAG 161
           +L VG  YIA+E AG
Sbjct: 211 MLCVGGGYIAVEFAG 225

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
           A +ER +  +N ++A G  P  P+IPG    I+S++ F L + P +VL VG  +I++E A
Sbjct: 146 AVKER-LETENILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 204
Query: 161 G 161
           G
Sbjct: 205 G 205

>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex With Glutathione Length = 112

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 15 VVELDKL-PNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          VVELD+L   G QIQ  L   TGQ TVPN+FI GKHI
Sbjct: 47 VVELDELGAQGPQIQKVLERLTGQHTVPNVFIGGKHI 83

>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human Thioredoxin Reductase 3 Length = 114

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 15 VVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          V+ELD++ +GA++Q  L E T QKTVPNIF++  H+
Sbjct: 46 VLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHV 81

>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 84  DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI---PGAHLGITSDDLFSL 140
           D     A F+D+H ++   +   V A+  +IA G RP YP+     G+ L +T+D+LF L
Sbjct: 113 DKIRGFAKFLDEHTLQ-VDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRL-LTNDNLFEL 170
Query: 141 NKDPGKVLLVGASYIALEC 159
           N  P  V + G   I LE 
Sbjct: 171 NDLPKSVAVFGPGVIGLEL 189

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
           A +ER +  ++ ++A G  P  P+IPG    I+S++ F L + P +VL VG  +I++E A
Sbjct: 146 AVKER-LETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 204
Query: 161 G 161
           G
Sbjct: 205 G 205

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
           A +ER +  ++ ++A G  P  P+IPG    I+S++ F L + P +VL VG  +I++E A
Sbjct: 145 AVKER-LETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 203
Query: 161 G 161
           G
Sbjct: 204 G 204

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECA 160
           A +ER +  ++ ++A G  P  P+IPG    I+S++ F L + P +VL VG  +I++E A
Sbjct: 147 AVKER-LETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFA 205
Query: 161 G 161
           G
Sbjct: 206 G 206

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            T+  +  ++A G  P +  I G  L ITS++ F L++ P + L VG  YI++E AG
Sbjct: 149 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 205

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            T+  +  ++A G  P +  I G  L ITS++ F L++ P + L VG  YI++E AG
Sbjct: 148 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 204

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            T+  +  ++A G  P +  I G  L ITS++ F L++ P + L VG  YI++E AG
Sbjct: 148 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 204

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 105 RTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            T+  +  ++A G  P +  I G  L ITS++ F L++ P + L VG  YI++E AG
Sbjct: 149 ETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 205

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 102 GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF----SLNKDPGKVLLVGASYIAL 157
           G+E     +  IIA G       +PG    +TSDD+F    S  K P  ++++GA YI L
Sbjct: 126 GKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGL 185
Query: 158 ECA 160
           E A
Sbjct: 186 EIA 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	6e-41
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	9e-41
4dna_A	463	Probable glutathione reductase; structural genomic	1e-40
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	3e-39
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	3e-39
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	5e-39
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	6e-39
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	1e-38
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	6e-38
1fec_A	490	Trypanothione reductase; redox-active center, oxid	8e-38
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	1e-37
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	8e-07
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	7e-04
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-37
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	4e-34
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-17
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-17
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	4e-15
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	2e-11
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	5e-15
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	1e-11
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	9e-15
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	1e-14
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	3e-11
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	1e-14
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	1e-10
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	2e-14
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	2e-14
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	1e-10
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	2e-14
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	1e-12
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	2e-14
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	2e-11
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	7e-14
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	3e-04
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	9e-14
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	1e-13
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-13
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	1e-13
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	1e-13
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	3e-11
1kte_A	105	Thioltransferase; redox-active center, electron tr	2e-13
1kte_A	105	Thioltransferase; redox-active center, electron tr	4e-11
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-13
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	2e-13
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	6e-11
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	3e-13
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	3e-13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	4e-13
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	1e-12
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	2e-12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	3e-12
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	6e-12
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-11
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	4e-09
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	1e-06
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	1e-08
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	7e-07
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	7e-08
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	8e-08
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	4e-07
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	2e-07
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	2e-07
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	7e-07
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	3e-07
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	6e-05
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	3e-07
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	8e-07
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-06
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	7e-06
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	8e-06
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	2e-05
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	2e-05
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-05
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-05
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	3e-05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-05
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	3e-05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	4e-05
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	5e-05
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	5e-05
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	8e-05
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	8e-05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-04
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	2e-04
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	3e-04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	4e-04
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	4e-04
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	8e-04
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	8e-04

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  141 bits (359), Expect = 6e-41
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
           ++  +E+  I   +  A FVD H ++  G+   +SA + +IA GGRP  P +PGA LGIT
Sbjct: 98  WDGYVERLGITRVDGHARFVDAHTIEVEGQ--RLSADHIVIATGGRPIVPRLPGAELGIT 155

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SD  F+L + P +V ++GA YI +E AG
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAG 183

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  141 bits (357), Expect = 9e-41
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
           YE  L KN +D     A FVD   ++  GE  T++A + +IA GGRP++PDIPG   GI 
Sbjct: 99  YENVLGKNNVDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGVEYGID 156

Query: 134 SDDLFSLNKDPGKVLLVGASYIALECAG 161
           SD  F+L   P +V +VGA YI +E  G
Sbjct: 157 SDGFFALPALPERVAVVGAGYIGVELGG 184

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  140 bits (356), Expect = 1e-40
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGI 132
           Y K L     +  + +A     + VK     +TV+A+  +IAVGG P+  D +PG  L I
Sbjct: 99  YRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCI 158

Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECAG 161
           TS++ F L   P  +L+ G  YIA+E A 
Sbjct: 159 TSNEAFDLPALPESILIAGGGYIAVEFAN 187

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  137 bits (348), Expect = 3e-39
 Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 3/91 (3%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH-L 130
              +L   K++Y N    FVD H    K    ERT++AQ F+IAVGGRP YPDIPGA   
Sbjct: 114 TRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEY 173

Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           GITSDDLFSL+++PGK L+VGA YI LECAG
Sbjct: 174 GITSDDLFSLDREPGKTLVVGAGYIGLECAG 204

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  137 bits (347), Expect = 3e-39
 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTY-PDIPGAHLGI 132
           Y + L+ + +  + ++AVFVD+H ++ +     +SA+  +IA G +      I G+ L +
Sbjct: 120 YREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCL 179

Query: 133 TSDDLFSLNKDPGKVLLVGASYIALECAG 161
           TS+++F L K P  +++VG  YI +E A 
Sbjct: 180 TSNEIFDLEKLPKSIVIVGGGYIGVEFAN 208

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score =  136 bits (346), Expect = 5e-39
 Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHL 130
           Y+  L K+ I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 114 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 173

Query: 131 GITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           GITSD  F L + PG+ ++VGA YIA+E AG
Sbjct: 174 GITSDGFFQLEELPGRSVIVGAGYIAVEMAG 204

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  136 bits (346), Expect = 6e-39
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPD-IPGAH 129
           Y+K LEK K+D     A F     V+           SA + ++A GG+  +P+ IPG  
Sbjct: 111 YQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFE 170

Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           LG  SD  F L + P KV++VGA YI +E AG
Sbjct: 171 LGTDSDGFFRLEEQPKKVVVVGAGYIGIELAG 202

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score =  136 bits (344), Expect = 1e-38
 Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAH- 129
           Y   L + K+ Y NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG   
Sbjct: 136 YRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKE 195

Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
             I+SDDLFSL   PGK L+VGASY+ALECAG
Sbjct: 196 YCISSDDLFSLPYCPGKTLVVGASYVALECAG 227

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  134 bits (339), Expect = 6e-38
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 74  YEKEL-EKNKIDYFNAKAVFVDKHRVK-------FAGEERTVSAQNFIIAVGGRPTYPDI 125
           YE    +   +D+F        K+ V         +  +  + A + ++A G  P  P I
Sbjct: 113 YEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAI 172

Query: 126 PGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           PG    I+S++ F L + P +VL VG  +I++E AG
Sbjct: 173 PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAG 208

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  133 bits (338), Expect = 8e-38
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 74  YEKEL-EKNKIDYFNAKAVFVDKHRV-------KFAGEERTVSAQNFIIAVGGRPTYPDI 125
           YE    +   + +        D H V         +    T+  +  ++A G  P +  I
Sbjct: 109 YEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGI 168

Query: 126 PGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            G  L ITS++ F L++ P + L VG  YI++E AG
Sbjct: 169 EGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAG 204

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score =  134 bits (340), Expect = 1e-37
 Identities = 45/92 (48%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPGAH- 129
           Y+  L  N++ Y NAK   +  H V+   +     T++    I+A G RP YP+IPGA  
Sbjct: 212 YKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVE 271

Query: 130 LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
            GITSDDLFSL   PGK L++GASY+ALECAG
Sbjct: 272 YGITSDDLFSLPYFPGKTLVIGASYVALECAG 303

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 13 FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
             +ELD+L NG+ IQ  L   +  +TVP +F+ GK I
Sbjct: 45 HATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFI 82

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 48 KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKID 84
          K +D+ +V++FSK+ CP+C K K+   E +++   I+
Sbjct: 13 KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIE 49

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score =  132 bits (335), Expect = 2e-37
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 5/93 (5%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYP-DIPGAH 129
           +  +L+  K+ YFN KA FVD+H V+     G+   +SA++ +IA GGRP YP  + GA 
Sbjct: 110 HRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGAL 169

Query: 130 -LGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
             GITSDD+F L + PGK L+VGASY+ALECAG
Sbjct: 170 EYGITSDDIFWLKESPGKTLVVGASYVALECAG 202

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  123 bits (312), Expect = 4e-34
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 13/100 (13%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAG------------EERTVSAQNFIIAVGGRPT 121
           Y + L K+K+D +   A F+ ++R+   G             E  +  +N +IAVG +P 
Sbjct: 95  YRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV 154

Query: 122 YPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           +P + G    I+SD+ F++ K+  K+ +VG+ YIA+E   
Sbjct: 155 FPPVKGIENTISSDEFFNI-KESKKIGIVGSGYIAVELIN 193

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT 133
           ++ + + N     N  A  +D H V+ AG+     A+N I+AVG  P   D+PG +    
Sbjct: 142 FQSKEQLNLEYILNCPAKVIDNHTVEAAGK--VFKAKNLILAVGAGPGTLDVPGVNAKGV 199

Query: 134 SDD---LFSLNKDPGKVLLV-GASYIALECAG 161
            D    +  L+ +PG  ++V G S  A+E   
Sbjct: 200 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGC 231

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 74  YEKELEK-NKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAH 129
           YE  L     I   + +A F D   +      G ER V     ++A G  P  P IPG  
Sbjct: 100 YEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK 159

Query: 130 LG--ITSDDLFSLNKDPGKVLLVGASYIALECA 160
                TS +  + +  P ++ ++G+S +ALE A
Sbjct: 160 ESPYWTSTEALASDTIPERLAVIGSSVVALELA 192

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 67.5 bits (165), Expect = 4e-15
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 12  NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           N++VVELD L  G Q Q AL++ TG++TVP IF++G  I
Sbjct: 75  NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 113

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
           + I +N VVIFSK+ C +CT AK+           ++Y   K V +D       G +   
Sbjct: 44  ETISDNCVVIFSKTSCSYCTMAKK-----LFHDMNVNY---KVVELDLLE---YGNQF-- 90

Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
             Q+ +  + G  T P   + G  +G  + D   L+K+ GK
Sbjct: 91  --QDALYKMTGERTVPRIFVNGTFIG-GATDTHRLHKE-GK 127

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 66.6 bits (163), Expect = 5e-15
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 9   PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           P     V+ELD++ NG++IQ AL E +GQKTVPN++I+GKHI
Sbjct: 64  PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHI 105

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKEL-EKNKIDYFNAKAVFVDKHRVKFAGEERT 106
             I    V + +K++CP+C           L ++  +    A  + +D+      G E  
Sbjct: 32  DLIGQKEVFVAAKTYCPYCKATL-----STLFQELNVPKSKALVLELDEMS---NGSEI- 82

Query: 107 VSAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
              Q+ +  + G+ T P+  I G H+G  + DL +L K+ GK
Sbjct: 83  ---QDALEEISGQKTVPNVYINGKHIG-GNSDLETLKKN-GK 119

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 69.5 bits (171), Expect = 9e-15
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG----IT 133
            +KN I      A F+ + +V        + A+  +IA G  P     P A +     +T
Sbjct: 99  FKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPL--IPPWAQVDYERVVT 156

Query: 134 SDDLFSLNKDPGKVLLVGASYIALE 158
           S +  S  + P ++++VG   I LE
Sbjct: 157 STEALSFPEVPKRLIVVGGGVIGLE 181

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          N++VVELD L  G Q Q AL++ TG++TVP IF++G  I
Sbjct: 53 NYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 91

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
           + I +N VVIFSK+ C +CT AK+           ++Y   K V +D       G +   
Sbjct: 22  ETISDNCVVIFSKTSCSYCTMAKK-----LFHDMNVNY---KVVELDLLEY---GNQF-- 68

Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
             Q+ +  + G  T P   + G  +G  + D   L+K+ GK
Sbjct: 69  --QDALYKMTGERTVPRIFVNGTFIG-GATDTHRLHKE-GK 105

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 64.9 bits (159), Expect = 1e-14
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
             V+ELD++ +GA++Q  L E T QKTVPNIF++  H+
Sbjct: 43 ECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHV 81

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 19/99 (19%)

Query: 50  IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSA 109
           I+ + VVIFSKS+CP  T+ K     +      ++      + +D+      G       
Sbjct: 14  IERSRVVIFSKSYCPHSTRVK-----ELFSSLGVEC---NVLELDQVD---DGARV---- 58

Query: 110 QNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
           Q  +  +  + T P+  +   H+G   D  F   +  G 
Sbjct: 59  QEVLSEITNQKTVPNIFVNKVHVG-GCDQTFQAYQS-GL 95

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 80  KNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDD 136
              + ++       D   V      G+E     +  IIA G       +PG    +TSDD
Sbjct: 101 YETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDD 160

Query: 137 ----LFSLNKDPGKVLLVGASYIALE 158
                 S  K P  ++++GA YI LE
Sbjct: 161 IFGYKTSFRKLPQDMVIIGAGYIGLE 186

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 65.0 bits (159), Expect = 2e-14
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          +++VVELD+L +G+Q+Q+AL   TG+ TVPN+FI GK I
Sbjct: 46 SYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQI 84

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
           +   +  VV+FSK++C +C + K+      L +    Y   K V +D+      G +   
Sbjct: 15  ELASSAPVVVFSKTYCGYCNRVKQ-----LLTQVGASY---KVVELDELS---DGSQL-- 61

Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
             Q+ +    GR T P+  I G  +G   D +   ++ 
Sbjct: 62  --QSALAHWTGRGTVPNVFIGGKQIG-GCDTVVEKHQR 96

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 22/42 (52%), Positives = 30/42 (71%)

Query: 9  PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          P     V++L+ +  GA IQ AL+E  GQ+TVPNI+I+GKHI
Sbjct: 52 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHI 93

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 21/113 (18%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKEL-EKNKIDYFNAKAVFVDKHRVKFAGEERT 106
             I  N + + SK++CP+C  A        L EK K+       + ++  +    G +  
Sbjct: 20  DLIAENEIFVASKTYCPYCHAAL-----NTLFEKLKVPRSKVLVLQLNDMK---EGADI- 70

Query: 107 VSAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK--VLL--VGAS 153
              Q  +  + G+ T P+  I G H+G  +DDL  L +  G+   LL  + A+
Sbjct: 71  ---QAALYEINGQRTVPNIYINGKHIG-GNDDLQELRET-GELEELLEPILAN 118

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 64.6 bits (158), Expect = 2e-14
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           +++V++ +     +++    + TG KTVP IF     I
Sbjct: 48 AYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTSI 86

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 16/101 (15%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
           + + NN V IF K  CPFC  A        L K        + V + + +      E   
Sbjct: 14  QRLANNKVTIFVKYTCPFCRNAL-----DILNKFSFKRGAYEIVDIKEFK---PENEL-- 63

Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
             +++   + G  T P        +G    DL  ++     
Sbjct: 64  --RDYFEQITGGKTVPRIFFGKTSIG-GYSDLLEIDNM-DA 100

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 67.1 bits (163), Expect = 7e-14
 Identities = 22/42 (52%), Positives = 30/42 (71%)

Query: 9   PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           P     V++L+ +  GA IQ AL+E  GQ+TVPNI+I+GKHI
Sbjct: 288 PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHI 329

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
             I  N + + SK++CP+   A         EK K+       + ++  +    G +   
Sbjct: 256 DLIAENEIFVASKTYCPYSHAAL----NTLFEKLKVPRSKVLVLQLNDMK---EGADI-- 306

Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
             Q  +  + G+ T P+  I G H+G  +DDL  L + 
Sbjct: 307 --QAALYEINGQRTVPNIYINGKHIG-GNDDLQELRET 341

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 66.8 bits (164), Expect = 9e-14
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
           ++KNKI   +    F D + +      G   +V+  N IIA G       +PG  L    
Sbjct: 101 MKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTR--LVPGTSLSANV 158

Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALE 158
           +T ++     + P  +++ GA  I +E
Sbjct: 159 VTYEEQILSRELPKSIIIAGAGAIGME 185

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
            +KNKID F      + + +V      GEE+ + A+N +IA G       IPG  +    
Sbjct: 125 FKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGVEVAFDE 182

Query: 132 ---ITSDDLFSLNKDPGKVLLVGASYIALE 158
              ++S    +L K P  +++VG   I LE
Sbjct: 183 KTIVSSTGALALEKVPASMIVVGGGVIGLE 212

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
           ++ N +  F      +   +V+     G  + +  +N I+A G +P   +IP A +    
Sbjct: 109 IKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV--EIPPAPVDQDV 166

Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
            + S         PGK+ ++GA  I LE
Sbjct: 167 IVDSTGALDFQNVPGKLGVIGAGVIGLE 194

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
            +KNK+ Y      FV    +      GE   V  ++ IIA G       +PG  +    
Sbjct: 106 FKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK--SLPGVTIDEKK 163

Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
            ++S    +L++ P K++++GA YI LE
Sbjct: 164 IVSSTGALALSEIPKKLVVIGAGYIGLE 191

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 12 NFQVVELDKL-PNGAQIQTALFERTGQKTVPNIFIHGKHI 50
             VVELD+L P G Q+Q  L   TGQ TVPN+F+ GKHI
Sbjct: 45 QPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHI 84

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 18/101 (17%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
           K +  N+VVI+SK+WC +CT+ K                  + + V+  ++   G +   
Sbjct: 14  KTVTENTVVIYSKTWCSYCTEVKTLFKRL----------GVQPLVVELDQLGPQGPQL-- 61

Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKDPGK 146
             Q  +  + G+ T P+  + G H+G    D   LN+  G 
Sbjct: 62  --QKVLERLTGQHTVPNVFVCGKHIG-GCTDTVKLNRK-GD 98

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 9  PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           +   + V++    +  +IQ  L + TG +TVP +FI  + I
Sbjct: 38 KEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECI 79

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
             I    VV+F K  CPFC K       +EL       F    +            E   
Sbjct: 7   SKIQPGKVVVFIKPTCPFCRKT------QELLSQL--PFKEGLLEFVDITATSDTNEI-- 56

Query: 108 SAQNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
             Q+++  + G  T P   I    +G    DL S++K 
Sbjct: 57  --QDYLQQLTGARTVPRVFIGKECIG-GCTDLESMHKR 91

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---ITS 134
           L+K+ +   +  A  +D  +V+  G+   +  ++ ++A G      ++P   LG   I+S
Sbjct: 106 LKKHGVKVVHGWAKVLDGKQVEVDGQ--RIQCEHLLLATGSSSV--ELPMLPLGGPVISS 161

Query: 135 DDLFSLNKDPGKVLLVGASYIALE 158
            +  +    P  +++VG  YI LE
Sbjct: 162 TEALAPKALPQHLVVVGGGYIGLE 185

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          N+ ++ELDK  +G ++Q  +   TG+ TVPN+ ++G   
Sbjct: 43 NYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSR 81

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 55.9 bits (135), Expect = 6e-11
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 15/96 (15%)

Query: 50  IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSA 109
           +D + ++IFSKS C +    KE      LE       N   + +DKH     GEE     
Sbjct: 11  LDLSPIIIFSKSTCSYSKGMKE-----LLENEYQFIPNYYIIELDKHG---HGEEL---- 58

Query: 110 QNFIIAVGGRPTYPD--IPGAHLGITSDDLFSLNKD 143
           Q +I  V GR T P+  + G   G  ++++  L+  
Sbjct: 59  QEYIKLVTGRGTVPNLLVNGVSRG-GNEEIKKLHTQ 93

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 65.2 bits (160), Expect = 3e-13
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG--- 131
            +KNK+ Y+  +  F   H ++     G++  +  +  IIA G  PT  ++P        
Sbjct: 103 FKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPT--ELPFLPFDEKV 160

Query: 132 -ITSDDLFSLNKDPGKVLLVGASYIALE 158
            ++S    +L + P  ++++G   I LE
Sbjct: 161 VLSSTGALALPRVPKTMVVIGGGVIGLE 188

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 65.2 bits (160), Expect = 3e-13
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 80  KNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---ITS 134
            NK++    +A FVD +  RV      +T + +N IIA G RP   ++P        + S
Sbjct: 103 GNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI--ELPNFKFSNRILDS 160

Query: 135 DDLFSLNKDPGKVLLVGASYIALE 158
               +L + P  ++++G  YI +E
Sbjct: 161 TGALNLGEVPKSLVVIGGGYIGIE 184

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 64.8 bits (159), Expect = 4e-13
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 80  KNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAHLG----I 132
           +NK+ + N       K++V      G  + +  +N +IA G   T    PG  +     +
Sbjct: 109 QNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVT--PFPGITIDEDTIV 166

Query: 133 TSDDLFSLNKDPGKVLLVGASYIALE 158
           +S    SL K P K++++GA  I +E
Sbjct: 167 SSTGALSLKKVPEKMVVIGAGVIGVE 192

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 80  KNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG----ITSD 135
            ++ D     A F+D+H ++   +   V A+  +IA G RP               +T+D
Sbjct: 109 FDEQDKIRGFAKFLDEHTLQ-VDDHSQVIAKRIVIATGSRPN--YPEFLAAAGSRLLTND 165

Query: 136 DLFSLNKDPGKVLLVGASYIALE 158
           +LF LN  P  V + G   I LE
Sbjct: 166 NLFELNDLPKSVAVFGPGVIGLE 188

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 62.5 bits (153), Expect = 2e-12
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 80  KNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG---ITSDD 136
            N ++     A  V    V+  GE     A++ I+A G  P   ++ G   G     S  
Sbjct: 105 GNGVELLRGFARLVGPKEVEVGGE--RYGAKSLILATGSEPL--ELKGFPFGEDVWDSTR 160

Query: 137 LFSLNKD-PGKVLLVGASYIALE 158
              + +  P ++L++G   + LE
Sbjct: 161 ALKVEEGLPKRLLVIGGGAVGLE 183

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 78  LEKNKIDYFNAKAVFVD------KHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 128
           L    +     +   +D      +HR+K     G      A   ++A G  P    +P A
Sbjct: 105 LLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR--ILPSA 162

Query: 129 HLG----ITSDDLFSLNKDPGKVLLVGASYIALE 158
                  +T   L+ L+  P  +++VG+     E
Sbjct: 163 QPDGERILTWRQLYDLDALPDHLIVVGSGVTGAE 196

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 78  LEKNKIDYFNAKAVFVDKHRVKFAGEE---------RTVSAQNFIIAVGGRPTYPDIPGA 128
            +KNK+ Y+     F D+ +++    +           +  +N I+A G   T    PG 
Sbjct: 106 FKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT--PFPGI 163

Query: 129 HLG----ITSDDLFSLNKDPGKVLLVGASYIALE 158
            +     ++S    SL + P ++ ++G   I LE
Sbjct: 164 EIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLE 197

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 18/95 (18%)

Query: 80  KNKIDYFNAKAVFVDKHRVK-------------FAGEERTVSAQNFIIAVGGRPTYPDIP 126
             K+D       F+D H ++               GE++ V+ +N IIA G R T   +P
Sbjct: 107 SRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT--KLP 164

Query: 127 GAHLG---ITSDDLFSLNKDPGKVLLVGASYIALE 158
                   I S    +L + PGK+L++G   I LE
Sbjct: 165 FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLE 199

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 53  NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNF 112
             + I++ S CPFC +A        L++  +++         ++ +    E R    +  
Sbjct: 16  AKIEIYTWSTCPFCMRAL-----ALLKRKGVEF--------QEYCIDGDNEAR----EAM 58

Query: 113 IIAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
                G+ + P I     H+G   DD+++L+   GK
Sbjct: 59  AARANGKRSLPQIFIDDQHIG-GCDDIYALDGA-GK 92

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           FQ   +D   +    +       G++++P IFI  +HI
Sbjct: 42 EFQEYCIDG--DNEAREAMAARANGKRSLPQIFIDDQHI 78

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           F  ++        +++  + ER+G+ T P IFI   H+
Sbjct: 32 EFNEIDAS---ATPELRAEMQERSGRNTFPQIFIGSVHV 67

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 44.1 bits (105), Expect = 7e-07
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 24/95 (25%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAG-EERTVSAQNFI 113
           V+I+++  CP+C +AK       L +   ++     +         A  +ER+       
Sbjct: 8   VIIYTRPGCPYCARAK-----ALLARKGAEF---NEIDASATPELRAEMQERS------- 52

Query: 114 IAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
               GR T+P I     H+G   DDL++L  + GK
Sbjct: 53  ----GRNTFPQIFIGSVHVG-GCDDLYALEDE-GK 81

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 13/80 (16%)

Query: 46  HGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEER 105
           H   +D   V+++  S C +C K K     K L    +D+     V+VD+      G+E 
Sbjct: 15  HVSGVDRGKVIMYGLSTCVWCKKTK-----KLLTDLGVDF---DYVYVDRLE----GKEE 62

Query: 106 TVSAQNFIIAVGGRPTYPDI 125
              A   +       ++P  
Sbjct: 63  E-EAVEEVRRFNPSVSFPTT 81

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
          +FQ + +D     A  +  + +R+G+ TVP IFI  +HI
Sbjct: 27 SFQELPID---GNAAKREEMIKRSGRTTVPQIFIDAQHI 62

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 22/95 (23%)

Query: 54  SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFI 113
           +V I++K  CP+C +AK       L    + +         +  +     +R       +
Sbjct: 2   NVEIYTKETCPYCHRAK-----ALLSSKGVSF--------QELPIDGNAAKREE-----M 43

Query: 114 IAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
           I   GR T P I     H+G   DDL++L+   G 
Sbjct: 44  IKRSGRTTVPQIFIDAQHIG-GYDDLYALDAR-GG 76

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 75  EKELEKNKID-YFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
           E  ++K  ID + NA+ + VD    RV+  G E++      + A G  P  P I G +L 
Sbjct: 66  EVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLK 125

Query: 131 GI----TSDDLFSL-----NKDPGKVLLVGASYIALECA 160
           G+       D  ++           V+++G  YI +E A
Sbjct: 126 GVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMA 164

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 23/96 (23%)

Query: 53  NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNF 112
             ++++++  CP+C +A+       L+K  + Y     +             R    Q  
Sbjct: 6   KEIILYTRPNCPYCKRAR-----DLLDKKGVKY---TDIDAS-------TSLR----QEM 46

Query: 113 IIAVGGRPTYPDI--PGAHLGITSDDLFSLNKDPGK 146
           +    GR T+P I     H+G   DDL++L    GK
Sbjct: 47  VQRANGRNTFPQIFIGDYHVG-GCDDLYALENK-GK 80

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 44.1 bits (105), Expect = 7e-07
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHI 50
           +  ++       +  Q  +    G+ T P IFI   H+
Sbjct: 32 KYTDIDAS----TSLRQEMVQRANGRNTFPQIFIGDYHV 66

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
            VIF +S CP+C +AK+   +   E++   Y            ++  G  +    ++   
Sbjct: 3   TVIFGRSGCPYCVRAKDLAEKLSNERDDFQY--------QYVDIRAEGITK----EDLQQ 50

Query: 115 AVGGRP-TYPDI--PGAHLGITSDDLFSLNKD 143
             G    T P I     H+G    D  +  K+
Sbjct: 51  KAGKPVETVPQIFVDQQHIG-GYTDFAAWVKE 81

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 12 NFQVVELDKLPNGAQIQTALFERTGQ--KTVPNIFIHGKHI 50
          +FQ   +D    G   +  L ++ G+  +TVP IF+  +HI
Sbjct: 30 DFQYQYVDIRAEGITKE-DLQQKAGKPVETVPQIFVDQQHI 69

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 14/90 (15%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           V I++++ CP+C  AK     +  E+N I +       +D +       +          
Sbjct: 6   VKIYTRNGCPYCVWAK-----QWFEENNIAF---DETIIDDY---AQRSKFYDEMNQSGK 54

Query: 115 AVGGRPTYPDI--PGAHLGITSDDLFSLNK 142
            +    T P I     H+G    +L +   
Sbjct: 55  VIFPISTVPQIFIDDEHIG-GFTELKANAD 83

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 46.4 bits (111), Expect = 8e-07
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 75  EKELEKNKIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-G 131
           EK  +   I+  + + V +D    ++  A     +   + ++A G R    D+P A L  
Sbjct: 64  EKFFQDQAIELISDRMVSIDREGRKLLLASG-TAIEYGHLVLATGARNRMLDVPNASLPD 122

Query: 132 I----TSDD---LFSLNKDPGKVLLVGASYIALECA 160
           +    T D+   L     D   V+++GA +I LE A
Sbjct: 123 VLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFA 158

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 113 IIAVGGRPTYPDIPGAHLG--ITSDDLFSLNKDPGK-VLLVGASYIALECA 160
           I+A G  P  P I G      ++  D+       G  V ++G   I  + A
Sbjct: 460 ILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTA 510

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 12/87 (13%)

Query: 82  KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GITS------ 134
            +D    K + V   +     EE+T +    I+  G +PT P IPG     +        
Sbjct: 83  NVD-PETKTIKV---KDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYND 138

Query: 135 -DDLFSLNKDPGKVLLVGASYIALECA 160
              LF        + ++G+ YI  E A
Sbjct: 139 AKKLFEEAPKAKTITIIGSGYIGAELA 165

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 41.5 bits (98), Expect = 8e-06
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           V+++  S CP C +       + L++  +D+        +   +     E        + 
Sbjct: 14  VLMYGLSTCPHCKRTL-----EFLKREGVDF--------EVIWIDKLEGEERKKVIEKVH 60

Query: 115 AVGGRPTYP--DIPGAHLG 131
           ++ G  + P       H+ 
Sbjct: 61  SISGSYSVPVVVKGDKHVL 79

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 75  EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
                + +ID     +   +D     +       T+SA   +IA G R     +PG+ L 
Sbjct: 64  ADWYGEARIDMLTGPEVTALDVQTRTISLDDG-TTLSADAIVIATGSRARTMALPGSQLP 122

Query: 131 GI----TSDD---LFSLNKDPGKVLLVGASYIALECA 160
           G+    T  D   L        ++L+VG   I  E A
Sbjct: 123 GVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA 159

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 82  KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
           K+D    K V+ +  +     +    S    +IA G RP  P+  G  L G+    T  D
Sbjct: 118 KVD-TEKKIVYAEHTK---TKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPD 173

Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
              +           V ++G   I LE A
Sbjct: 174 AERILKTLETNKVEDVTIIGGGAIGLEMA 202

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 82  KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
            I       V V       +GEER  +    II+ G  P   DIPG  L  I        
Sbjct: 81  AIQ-PKEHQVTVKDLV---SGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQW 136

Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
              L     + +   V+++G+ YI +E A
Sbjct: 137 AIKLKQKTVDPEVNNVVVIGSGYIGIEAA 165

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 13/97 (13%)

Query: 77  ELEKNKID-YFNAKAVFVDKHR----VKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
           EL + KI    N + V +D            E++  S    I+A G       I G+   
Sbjct: 67  ELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTE 126

Query: 131 GITS-------DDLFSLNKDPGKVLLVGASYIALECA 160
            +              L ++   V ++GA  I +E  
Sbjct: 127 KLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAI 163

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 82  KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
            ID   A  V +        GE RT+     ++A+G +   P + G  L G+      D+
Sbjct: 91  AID-RAAHTVEI---ENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDE 146

Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
              +       +  K ++VG  +I LE A
Sbjct: 147 AEFVQHAISAGEVSKAVIVGGGFIGLEMA 175

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 82  KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI----TSDD 136
            ID   AK V V   R    G E   S    +++ G  P  P IPG             D
Sbjct: 83  AID-RAAKLVTV---RRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPD 138

Query: 137 LFSL-----NKDPGKVLLVGASYIALECA 160
           +  +       +     +VG  +I LE  
Sbjct: 139 MDRILQTIQMNNVEHATVVGGGFIGLEMM 167

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 75  EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL- 130
            +  E   ++    A+ V +D   H VK       +     I A GG P      GA L 
Sbjct: 72  AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGS-AIEYGKLIWATGGDPRRLSCVGADLA 130

Query: 131 GI----TSDD----LFSLNKDPGKVLLVGASYIALECA 160
           G+    T +D    +  L+      +++G  YI LE A
Sbjct: 131 GVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAA 168

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 23/101 (22%)

Query: 75  EKELEKNKID-YFNAKAVFVDKHRVKFAGEERTVSAQNF-------IIAVGGRPTYPDIP 126
                K  I+     +A  +D+         + V  +         ++A G R   P I 
Sbjct: 67  LDWYRKRGIEIRLAEEAKLIDR-------GRKVVITEKGEVPYDTLVLATGARAREPQIK 119

Query: 127 GAHLGI----TSDDLFSLN---KDPGKVLLVGASYIALECA 160
           G    +    T  D   +    ++ G+ +++G  +I LE A
Sbjct: 120 GKE-YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELA 159

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)

Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85
          S+ +++K  C  CT  K     K L++  + Y
Sbjct: 2  SITLYTKPACVQCTATK-----KALDRAGLAY 28

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 26/111 (23%)

Query: 76  KELEKNKID-YFNAKAVFVDKH----RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH- 129
           +ELE      Y  +    +D           G+    +    I A G +P  P I GA  
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159

Query: 130 ------LGITSDDLFSL--------------NKDPGKVLLVGASYIALECA 160
                    T ++L  +              NKD  +V +VGA YI +E A
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELA 210

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 21/93 (22%)

Query: 82  KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSL- 140
           KI+    K + +         E    +    I++ G +P  P IPG      +  LF+L 
Sbjct: 118 KIN-KEEKTITIKNVT---TNETYNEAYDVLILSPGAKPIVPSIPGIE---EAKALFTLR 170

Query: 141 -------------NKDPGKVLLVGASYIALECA 160
                         K P    ++G  +I +E  
Sbjct: 171 NVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMV 203

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 24/98 (24%)

Query: 79  EKNKID-YFNAKAVFVDKHRVKFAGEERTVSAQN--------FIIAVGGRPTYPDIPGAH 129
           EKN I    +  A  +D          + V+ ++         IIA G       +P A 
Sbjct: 73  EKNNIKVITSEFATSIDP-------NNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHAD 125

Query: 130 LGI----TSDDLFSLN---KDPGKVLLVGASYIALECA 160
             I    + DD   +    K+ GK  ++G   + +E A
Sbjct: 126 -EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELA 162

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 15/100 (15%)

Query: 75  EKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG 131
                   I      +   ++  + +V  +     +     ++A GGRP    +    +G
Sbjct: 67  PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGR-ALDYDRLVLATGGRPRPLPVASGAVG 125

Query: 132 I--------TSDDLFSLNKD--PGK-VLLVGASYIALECA 160
                    T +D   + +       ++++G  YI LE A
Sbjct: 126 KANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVA 165

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 5/32 (15%)

Query: 54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY 85
           + I++++ C  C   K     + +E    D+
Sbjct: 2  RITIYTRNDCVQCHATK-----RAMENRGFDF 28

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 79  EKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHL-GI-- 132
              ++++     A   D   H V  +    T+     ++A G  P            +  
Sbjct: 70  RAPEVEWLLGVTAQSFDPQAHTVALSDGR-TLPYGTLVLATGAAPRALPTLQGATMPVHT 128

Query: 133 --TSDDLFSLNKD--PGK-VLLVGASYIALECA 160
             T +D   +     P   +L+VG   I LE A
Sbjct: 129 LRTLEDARRIQAGLRPQSRLLIVGGGVIGLELA 161

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 101 AGEERTVSAQNFIIAVGGRPTYPDIPG-----------AHLGITSDDLFSLNKDPGKVLL 149
            GEE   + +  +++ GG P  P +             +            +  P K+ +
Sbjct: 173 DGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAI 232

Query: 150 VGASYIALECA 160
           +G    A E  
Sbjct: 233 IGGGQSAAEAF 243

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 71  ENNYEKELEKNKIDY-FNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRP---TYPD 124
                  +E   +      K V +D   + VK       ++ +  +IA GG P   +  D
Sbjct: 93  SAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGS-QITYEKCLIATGGTPRSLSAID 151

Query: 125 IPGAHLGI------TSDD---LFSLNKDPGKVLLVGASYIALECA 160
             GA +           D   L  ++++   + ++G  ++  E A
Sbjct: 152 RAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELA 196

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 21/97 (21%)

Query: 79  EKNKID-YFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSD 135
           E+       + +   +D    R+    E   V  ++ ++A G  P    + G       D
Sbjct: 71  EQLNARILTHTRVTGIDPGHQRIWIGEE--EVRYRDLVLAWGAEPIRVPVEGDAQ----D 124

Query: 136 DLFSLN------------KDPGKVLLVGASYIALECA 160
            L+ +N                +VLL+GA  I  E A
Sbjct: 125 ALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFA 161

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 23/105 (21%)

Query: 74  YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNF---IIAVGGRP--------TY 122
            E ++ K        K         +       V        IIA G R         T+
Sbjct: 447 RETQITK-----LLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTH 501

Query: 123 PDIPGAHLG----ITSDDLFSLNKDPGK-VLLVGA--SYIALECA 160
             IPGA       +T + +    K  GK V+++ A   ++A   A
Sbjct: 502 DPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLA 546

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.84
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.68
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.54
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.54
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.54
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.53
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.52
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.5
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.5
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.5
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.49
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.48
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.48
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.48
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.46
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.46
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.46
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.46
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.45
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.44
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.43
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.42
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.41
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.4
4dna_A	463	Probable glutathione reductase; structural genomic	99.4
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.37
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.37
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.36
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.36
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.35
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.35
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.34
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.34
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.33
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.31
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.3
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.3
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.29
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.29
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.26
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.25
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.25
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.25
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.23
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.23
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.22
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.21
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.19
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.15
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.14
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.14
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.13
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.11
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.08
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.08
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.07
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.04
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.02
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.02
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.01
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.01
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.01
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.01
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.98
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.97
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.96
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.96
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.92
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.91
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.9
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.89
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.86
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.83
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.79
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.78
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	98.77
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.73
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.67
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	98.64
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.63
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.62
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.62
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.57
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.54
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.46
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	98.44
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	98.44
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.42
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	98.42
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.41
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	98.4
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.38
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.37
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	98.35
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.31
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.31
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	98.3
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.29
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	98.29
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	98.28
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.28
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.25
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.2
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.19
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.17
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.17
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	98.15
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.13
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.05
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.03
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.97
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	97.97
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.92
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	97.9
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.89
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.81
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.8
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.78
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	97.74
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	97.73
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	97.7
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	97.66
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	97.65
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	97.63
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.57
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.55
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	97.5
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.5
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	97.38
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.37
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.37
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	97.36
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.36
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.3
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.21
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.11
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.05
2bry_A	497	NEDD9 interacting protein with calponin homology a	96.98
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.98
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.87
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.8
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.78
1kte_A	105	Thioltransferase; redox-active center, electron tr	96.77
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	96.72
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	96.72
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.62
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.61
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	96.59
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	96.5
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	96.49
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	96.49
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	96.45
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	96.43
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	96.4
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	96.38
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	96.35
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.34
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.29
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	96.29
1ttz_A	87	Conserved hypothetical protein; structural genomic	96.24
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.18
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.09
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	96.05
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	95.89
3l78_A	120	Regulatory protein SPX; transcription, transcripti	95.85
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.83
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	95.82
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	95.72
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	95.65
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	95.59
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	95.51
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	95.48
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	95.46
3fz4_A	120	Putative arsenate reductase; APC61768, structural	94.95
3gkx_A	120	Putative ARSC family related protein; ARSC family	94.93
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	94.86
3rdw_A	121	Putative arsenate reductase; structural genomics,	94.76
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	94.61
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.58
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.28
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.17
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	94.14
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	93.95
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	93.95
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.84
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.77
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	93.68
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.67
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	93.45
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	93.41
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	93.2
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	93.02
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	92.99
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	92.9
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	92.89
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	92.85
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	92.69
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	92.65
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	92.6
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	92.58
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	92.43
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	92.35
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.29
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	92.28
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	92.25
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	92.12
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.12
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.12
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	92.05
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	92.03
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	91.99
1ttz_A	87	Conserved hypothetical protein; structural genomic	91.98
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	91.93
1ojt_A	482	Surface protein; redox-active center, glycolysis,	91.83
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	91.75
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	91.73
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	91.51
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	91.48
2cul_A	232	Glucose-inhibited division protein A-related PROT	91.35
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.29
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	91.28
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	91.07
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	90.96
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	90.73
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	90.72
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	90.71
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	90.58
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	90.5
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	90.49
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.23
1fec_A	490	Trypanothione reductase; redox-active center, oxid	90.22
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	90.18
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	89.8
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	89.75
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	89.7
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	89.4
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	89.15
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	89.01
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	88.95
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	88.95
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	88.63
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	88.62
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	88.48
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	88.25
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	88.25
4dna_A	463	Probable glutathione reductase; structural genomic	88.14
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	88.0
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	87.88
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	87.81
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	87.79
3r9u_A	315	Thioredoxin reductase; structural genomics, center	87.75
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	87.72
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	87.6
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	87.58
1mek_A	120	Protein disulfide isomerase; electron transport, r	87.55
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	87.54
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	87.53
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	87.45
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	87.44
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	87.44
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	87.37
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	87.2
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	86.87
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	86.8
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	86.76
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	86.65
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	86.61
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	86.45
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	86.43
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	86.42
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	86.41
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	86.32
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	86.13
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	86.03
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	85.98
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	85.97
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	85.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	85.91
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	85.8
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	85.73
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	85.72
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	85.66
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	85.55
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	85.55
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	85.48
2lrt_A	152	Uncharacterized protein; structural genomics, thio	85.32
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	85.16
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	85.1
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	85.04
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	84.96
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	84.91
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	84.87
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	84.85
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	84.84
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	84.8
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	84.74
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	84.51
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	84.5
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	84.47
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	84.47
3raz_A	151	Thioredoxin-related protein; structural genomics,	84.47
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	84.46
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	84.41
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	84.4
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	84.37
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	84.32
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	84.26
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	84.18
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	84.1
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	84.03
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	83.93
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	83.88
2l57_A	126	Uncharacterized protein; structural genomics, unkn	83.88
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	83.86
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	83.74
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	83.71
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	83.65
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	83.59
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	83.56
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	83.54
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	83.54
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	83.38
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	83.33
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	83.2
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	83.2
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	83.19
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	83.18
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	83.18
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	83.16
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	83.1
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	83.07
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	83.04
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	82.91
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	82.89
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	82.86
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	82.85
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	82.84
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	82.72
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	82.71
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	82.69
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	82.65
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	82.6
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	82.57
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	82.56
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	82.52
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	82.46
2bry_A	497	NEDD9 interacting protein with calponin homology a	82.46
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	82.43
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	82.38
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	82.38
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	82.18
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	82.17
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	82.07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	82.01
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	81.9
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	81.84
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	81.8
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	81.65
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	81.42
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	81.32
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	81.3
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	81.28
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	81.26
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	81.23
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	81.18
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	81.09
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	81.05
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	80.95
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	80.9
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	80.82
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	80.72
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	80.65
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	80.64
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	80.51
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	80.49
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	80.48
3dme_A	369	Conserved exported protein; structural genomics, P	80.35
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	80.21
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	80.19
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	80.05
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	81.0
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	80.19

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.84  E-value=1.1e-20  Score=158.48  Aligned_cols=162  Identities=41%  Similarity=0.716  Sum_probs=126.1

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec------------------------------
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID------------------------------   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig------------------------------   51 (164)
                      ++.+|++.+++|+.++++.++++.++++++.+++|.+++|++|+++++++                              
T Consensus        34 ~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~~igG~~~l~~~~~~g~L~~~l~~~~~~~dvvVI  113 (598)
T 2x8g_A           34 VKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVI  113 (598)
T ss_dssp             HHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTEEEECHHHHHHHHHTTCHHHHHHCCSSSEEEEEE
T ss_pred             HHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCEEEEeeehhhhhhhcCcchhhcccccccccEEEE
Confidence            45678889999999999999888999999999999999999999999986                              


Q ss_pred             ----------------CCceEEEec--c------C-----Cc--ccccccc-----------------------------
Q psy7674          52 ----------------NNSVVIFSK--S------W-----CP--FCTKAKE-----------------------------   71 (164)
Q Consensus        52 ----------------~d~vvv~~~--~------~-----cp--~~~~~~~-----------------------------   71 (164)
                                      +.+++++.+  +      |     |.  +|.+.+.                             
T Consensus       114 G~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~  193 (598)
T 2x8g_A          114 GGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHN  193 (598)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCCCC
T ss_pred             CCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccccCCcCccC
Confidence                            334444553  1      1     11  2322110                             


Q ss_pred             h----------------hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cce
Q psy7674          72 N----------------NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLG  131 (164)
Q Consensus        72 ~----------------~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v  131 (164)
                      +                .++..+++.+|+++.+.+.+++.+.+.+   ++....+.||+||+|||++|+.|++||. +++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~~  273 (598)
T 2x8g_A          194 WSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYG  273 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCCSSTTHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCCCCCCcccce
Confidence            0                1122356679999999988888887776   2322469999999999999999999997 566


Q ss_pred             echhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         132 ITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       132 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++++++.+...+++++|||||++|+|+|..|
T Consensus       274 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  305 (598)
T 2x8g_A          274 ITSDDLFSLPYFPGKTLVIGASYVALECAGFL  305 (598)
T ss_dssp             EEHHHHTTCSSCCCSEEEECCSHHHHHHHHHH
T ss_pred             EcHHHHhhCccCCCEEEEECCCHHHHHHHHHH
Confidence            78888888877889999999999999999876

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.68  E-value=9e-17  Score=133.59  Aligned_cols=90  Identities=51%  Similarity=0.824  Sum_probs=78.0

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe--C---CeeEEEEeceEEEecCCCCCCCCCC-Cc-cceechhhhccCcCCCCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF--A---GEERTVSAQNFIIAVGGRPTYPDIP-GA-HLGITSDDLFSLNKDPGK  146 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v--~---~~~~~~~~d~liiAtGs~~~~p~i~-g~-~~v~~~~~~~~~~~~~~~  146 (164)
                      +...+++.+|+++.|.+.+++++++.+  .   +..+.+.+|++||||||+|+.|+.+ +. +.++++++++.+.+.|++
T Consensus       146 ~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~~~~~~~~~~~ts~~~l~l~~lP~~  225 (542)
T 4b1b_A          146 YMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITSDDIFSLKKDPGK  225 (542)
T ss_dssp             HHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCSSSBTHHHHCBCHHHHTTCSSCCCS
T ss_pred             HHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCCcccCCCccccCchhhhccccCCce
Confidence            445678889999999999999998876  1   2346799999999999999999754 44 678899999999999999


Q ss_pred             EEEECCcHHHHHhhccc
Q psy7674         147 VLLVGASYIALECAGCD  163 (164)
Q Consensus       147 vvViGgG~~g~E~A~~l  163 (164)
                      ++|||||+||+|+|..|
T Consensus       226 lvIIGgG~IGlE~A~~~  242 (542)
T 4b1b_A          226 TLVVGASYVALECSGFL  242 (542)
T ss_dssp             EEEECCSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHH
Confidence            99999999999999876

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.54  E-value=1.1e-14  Score=120.45  Aligned_cols=89  Identities=52%  Similarity=0.812  Sum_probs=77.4

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCcEEEE
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      ...++..+|+++.+++.+++++.+.+   +++...+.||++|||||++|+.|++||. +++.++++++.+...+++++||
T Consensus       137 ~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~i~G~~~~~~t~~~~~~l~~~~~~vvVI  216 (519)
T 3qfa_A          137 RVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVV  216 (519)
T ss_dssp             HHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCCCTTHHHHCBCHHHHTTCSSCCCSEEEE
T ss_pred             HHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCCCCCccCceEcHHHHhhhhhcCCeEEEE
Confidence            34567789999999999999888777   2322479999999999999999999997 6778899999888889999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       217 GgG~ig~E~A~~l  229 (519)
T 3qfa_A          217 GASYVALECAGFL  229 (519)
T ss_dssp             CCSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999999876

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.54  E-value=1.6e-14  Score=118.78  Aligned_cols=90  Identities=30%  Similarity=0.546  Sum_probs=77.6

Q ss_pred             hHHHHhhc-CceEEeeEEEEeeCcEEEeC--Ce-----eEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCC
Q psy7674          74 YEKELEKN-KIDYFNAKAVFVDKHRVKFA--GE-----ERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPG  145 (164)
Q Consensus        74 ~~~~l~~~-gv~~~~~~~~~~~~~~v~v~--~~-----~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~  145 (164)
                      +...+++. +|+++.+++++++++++.++  ++     ...+.||+||+|||++|+.|++||.++++++++++.+...++
T Consensus       113 ~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~  192 (495)
T 2wpf_A          113 YEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPR  192 (495)
T ss_dssp             HHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEEECCCCCTTGGGCEEHHHHTTCSSCCS
T ss_pred             HHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCCCcCCCCCCCccccccHHHHHhhhhcCC
Confidence            34456777 99999999999998888874  11     367999999999999999999999767888999988888899


Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      +++|||||++|+|+|..|
T Consensus       193 ~vvViGgG~ig~E~A~~l  210 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIF  210 (495)
T ss_dssp             EEEEECSSHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHH
Confidence            999999999999999876

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.54  E-value=1.2e-14  Score=118.05  Aligned_cols=88  Identities=44%  Similarity=0.765  Sum_probs=77.0

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGAS  153 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG  153 (164)
                      ++..+++.+++++.+++++++++++.+++  +.+.||++++|||++|+.|++||.+.+.++++++.+...+++++|||||
T Consensus        99 ~~~~~~~~~v~~~~g~~~~i~~~~v~~~g--~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG  176 (450)
T 1ges_A           99 YENVLGKNNVDVIKGFARFVDAKTLEVNG--ETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAG  176 (450)
T ss_dssp             HHHHHHHTTCEEEESCCEEEETTEEEETT--EEEEEEEEEECCCEEECCCCSTTGGGSBCHHHHHHCSSCCSEEEEECCS
T ss_pred             HHHHHHhCCCEEEEeEEEEecCCEEEECC--EEEEeCEEEECCCCCCCCCCCCCccceecHHHhhhhhhcCCeEEEECCC
Confidence            34556778999999988888888887766  6799999999999999999999976678888988888889999999999


Q ss_pred             HHHHHhhccc
Q psy7674         154 YIALECAGCD  163 (164)
Q Consensus       154 ~~g~E~A~~l  163 (164)
                      ++|+|+|..|
T Consensus       177 ~~g~e~A~~l  186 (450)
T 1ges_A          177 YIGVELGGVI  186 (450)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.53  E-value=2e-14  Score=117.23  Aligned_cols=88  Identities=42%  Similarity=0.774  Sum_probs=76.9

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGAS  153 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG  153 (164)
                      ++..+++.+++++.+++.+++.+++.+++  ..+.||++|+|||++|+.|++||.+.+.++++++.+...+++++|||||
T Consensus        98 ~~~~~~~~gv~~~~g~~~~i~~~~v~~~g--~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvVvGgG  175 (463)
T 2r9z_A           98 WDGYVERLGITRVDGHARFVDAHTIEVEG--QRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQPKRVAIIGAG  175 (463)
T ss_dssp             HHHHHHHTTCEEEESCEEEEETTEEEETT--EEEEEEEEEECCCEEECCCSCTTGGGSBCHHHHHHCSSCCSEEEEECCS
T ss_pred             HHHHHHHCCCEEEEeEEEEccCCEEEECC--EEEEcCEEEECCCCCCCCCCCCCccceecHHHHhhhhccCCEEEEECCC
Confidence            34556778999999988888888888766  6799999999999999999999976678888888888888999999999


Q ss_pred             HHHHHhhccc
Q psy7674         154 YIALECAGCD  163 (164)
Q Consensus       154 ~~g~E~A~~l  163 (164)
                      ++|+|+|..|
T Consensus       176 ~~g~e~A~~l  185 (463)
T 2r9z_A          176 YIGIELAGLL  185 (463)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.52  E-value=2e-14  Score=117.86  Aligned_cols=90  Identities=53%  Similarity=0.919  Sum_probs=77.9

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcCCCCcEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~~~~~vv  148 (164)
                      +...+++.+++++.+++.+++++.+.+   ++....+.||++|||||++|+.|+ +||. +.+.++++++.+...+++++
T Consensus       110 ~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~i~G~~~~~~~~~~~~~~~~~~~~vv  189 (488)
T 3dgz_A          110 HRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTL  189 (488)
T ss_dssp             HHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSSCBTHHHHCBCHHHHTTCSSCCCSEE
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCCCCCcccccCcHHHHHhhhhcCCeEE
Confidence            445677789999999999999888777   333357999999999999999999 9997 66788999998888899999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       190 ViGgG~ig~E~A~~l  204 (488)
T 3dgz_A          190 VVGASYVALECAGFL  204 (488)
T ss_dssp             EECCSHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999876

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.50  E-value=2.9e-14  Score=113.90  Aligned_cols=89  Identities=24%  Similarity=0.365  Sum_probs=70.6

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCcccee---chhhhccCcC---
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGI---TSDDLFSLNK---  142 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~---~~~~~~~~~~---  142 (164)
                      ...+++++.+++++.+ +++.+|.  +++++ ++  +.+.||+||+|||++|+.|++||.++++   +++++..+..   
T Consensus        67 ~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~  144 (385)
T 3klj_A           67 KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSG--EKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECK  144 (385)
T ss_dssp             SCHHHHHHTTCEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhh
Confidence            3567788899999988 6778874  56766 45  6899999999999999999999865444   4566554443   


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus       145 ~~~~vvVIGgG~~g~E~A~~l  165 (385)
T 3klj_A          145 NKGKAFIIGGGILGIELAQAI  165 (385)
T ss_dssp             HHSCEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            268999999999999999876

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.50  E-value=4.4e-14  Score=115.20  Aligned_cols=87  Identities=21%  Similarity=0.311  Sum_probs=75.1

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC-CCCccceechhhhccCcC-CCCcEEEECC
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNK-DPGKVLLVGA  152 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~-i~g~~~v~~~~~~~~~~~-~~~~vvViGg  152 (164)
                      ..++++.+++++.+++++++++++.+++  ..+.||++|+|||++|+.|+ +++...++++++++.+.+ .+++++||||
T Consensus       100 ~~~~~~~gv~~~~g~~~~~~~~~v~v~g--~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~l~~~~~~~vvViGg  177 (464)
T 2eq6_A          100 GTLLKGNGVELLRGFARLVGPKEVEVGG--ERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALKVEEGLPKRLLVIGG  177 (464)
T ss_dssp             HHHHHHTTCEEEESCEEEEETTEEEETT--EEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTCGGGCCCSEEEEECC
T ss_pred             HHHHHhCCCEEEeeeEEEccCCEEEEcc--EEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHhhhhhcCCEEEEECC
Confidence            4556778999999988888888888775  67999999999999999887 887446789999988877 7899999999


Q ss_pred             cHHHHHhhccc
Q psy7674         153 SYIALECAGCD  163 (164)
Q Consensus       153 G~~g~E~A~~l  163 (164)
                      |++|+|+|..|
T Consensus       178 G~~g~e~A~~l  188 (464)
T 2eq6_A          178 GAVGLELGQVY  188 (464)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999876

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.50  E-value=5.9e-14  Score=115.23  Aligned_cols=90  Identities=29%  Similarity=0.490  Sum_probs=77.3

Q ss_pred             hHHHHhhc-CceEEeeEEEEeeCcEEEeC-----Ce--eEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCC
Q psy7674          74 YEKELEKN-KIDYFNAKAVFVDKHRVKFA-----GE--ERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPG  145 (164)
Q Consensus        74 ~~~~l~~~-gv~~~~~~~~~~~~~~v~v~-----~~--~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~  145 (164)
                      +...+++. +|+++.+++++++++++.+.     +.  ...+.||++++|||++|+.|++||.+.++++++++.+...++
T Consensus       109 ~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~~~~~~~~~  188 (490)
T 1fec_A          109 YEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPK  188 (490)
T ss_dssp             HHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEEECCCCSBTGGGCBCHHHHTTCSSCCS
T ss_pred             HHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCCCCCCCCCCCccceecHHHHhhhhhcCC
Confidence            34556778 99999999999998888873     22  157999999999999999999998767789999998888899


Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      +++|||||++|+|+|..|
T Consensus       189 ~vvViGgG~ig~E~A~~l  206 (490)
T 1fec_A          189 RALCVGGGYISIEFAGIF  206 (490)
T ss_dssp             EEEEECSSHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHH
Confidence            999999999999999875

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.49  E-value=6.8e-14  Score=113.99  Aligned_cols=89  Identities=30%  Similarity=0.434  Sum_probs=74.9

Q ss_pred             HHHHhhc-CceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEE
Q psy7674          75 EKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        75 ~~~l~~~-gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vv  148 (164)
                      .+++++. +++++.+++.+++.+.+.+   ++....+.||++|+|||++|+.|++||.  ..+++.++++.+...+++++
T Consensus       101 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vv  180 (467)
T 1zk7_A          101 EGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLA  180 (467)
T ss_dssp             HHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTTTSCCBCHHHHHHCSSCCSEEE
T ss_pred             HHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCCcCceecHHHHhcccccCCEEE
Confidence            3556677 9999999988888877666   3322579999999999999999999987  35778888888888899999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       181 ViGgG~~g~E~A~~l  195 (467)
T 1zk7_A          181 VIGSSVVALELAQAF  195 (467)
T ss_dssp             EECCSHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.48  E-value=1.4e-13  Score=112.40  Aligned_cols=89  Identities=24%  Similarity=0.283  Sum_probs=75.5

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      .+++++.+++++.+++.+++++.+.+   ++....+.||+||+|||++|+.|+++|.  ..++++++++.+...+++++|
T Consensus       104 ~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~v~t~~~~~~~~~~~~~vvV  183 (474)
T 1zmd_A          104 AHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVV  183 (474)
T ss_dssp             HHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSSEECHHHHTTCSSCCSEEEE
T ss_pred             HHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCcEEcHHHHhhccccCceEEE
Confidence            46677889999999888888877666   2122579999999999999999999886  358899999888878899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       184 iGgG~~g~E~A~~l  197 (474)
T 1zmd_A          184 IGAGVIGVELGSVW  197 (474)
T ss_dssp             ECCSHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.48  E-value=1.1e-13  Score=112.70  Aligned_cols=87  Identities=21%  Similarity=0.332  Sum_probs=75.0

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC-CCCccceechhhhccCcCCCCcEEEECCc
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFSLNKDPGKVLLVGAS  153 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~-i~g~~~v~~~~~~~~~~~~~~~vvViGgG  153 (164)
                      ..++++.|++++.+++.+++++++.+++  ..+.||++|+|||++|+.|+ ++....+.++++.+.+.+.+++++|||||
T Consensus       103 ~~~~~~~gv~~~~g~~~~~~~~~v~v~~--~~~~~d~lviATGs~p~~~~~~~~~~~v~~~~~~~~~~~~~~~vvViGgG  180 (458)
T 1lvl_A          103 AALLKKHGVKVVHGWAKVLDGKQVEVDG--QRIQCEHLLLATGSSSVELPMLPLGGPVISSTEALAPKALPQHLVVVGGG  180 (458)
T ss_dssp             HHHHHHTTCEEECSCEEEEETTEEEETT--EEEECSEEEECCCEEECCBTTBCCBTTEECHHHHTCCSSCCSEEEEECCS
T ss_pred             HHHHHhCCcEEEEEEEEEccCCEEEEee--EEEEeCEEEEeCCCCCCCCCCCCccCcEecHHHHhhhhccCCeEEEECcC
Confidence            4567788999999998888888888865  67999999999999998877 66434688899998888788999999999


Q ss_pred             HHHHHhhccc
Q psy7674         154 YIALECAGCD  163 (164)
Q Consensus       154 ~~g~E~A~~l  163 (164)
                      ++|+|+|..|
T Consensus       181 ~~g~e~A~~l  190 (458)
T 1lvl_A          181 YIGLELGIAY  190 (458)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.48  E-value=8.4e-14  Score=113.95  Aligned_cols=88  Identities=60%  Similarity=1.064  Sum_probs=76.7

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCcEEEE
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      ...+++.+++++.+.+.+++++.+.+   ++. ..+.||++|+|||++|+.|++||. +...++++++.+...+++++||
T Consensus       115 ~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~-~~~~~d~lviATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~vvVi  193 (483)
T 3dgh_A          115 RVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-RTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVV  193 (483)
T ss_dssp             HHHHHHTTCEEECSEEEEEETTEEEEECTTCC-EEEEEEEEEECCCEEECCCSSTTHHHHCBCHHHHTTCSSCCCEEEEE
T ss_pred             HHHHHhCCCEEEEeEEEEccCCEEEEEeCCCe-EEEEcCEEEEeCCCCcCCCCCCCcccccCcHHHHhhhhhcCCcEEEE
Confidence            34567789999999999999888777   332 479999999999999999999997 6678899999888889999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       194 GgG~~g~E~A~~l  206 (483)
T 3dgh_A          194 GAGYIGLECAGFL  206 (483)
T ss_dssp             CCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.46  E-value=1.7e-13  Score=111.58  Aligned_cols=89  Identities=24%  Similarity=0.425  Sum_probs=75.8

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      ..++++.+++++.+++.+++++.+.+   ++....+.||++|+|||++|+.|+++|.  ..++++++++.+...+++++|
T Consensus       100 ~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v~t~~~~~~~~~~~~~vvV  179 (468)
T 2qae_A          100 EYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTMVV  179 (468)
T ss_dssp             HHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSEECHHHHHTCSSCCSEEEE
T ss_pred             HHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCceechHHHhhcccCCceEEE
Confidence            45677789999999988888877666   3322579999999999999999998886  468899999988888899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       180 iGgG~~g~E~A~~l  193 (468)
T 2qae_A          180 IGGGVIGLELGSVW  193 (468)
T ss_dssp             ECCSHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.1e-13  Score=113.23  Aligned_cols=89  Identities=39%  Similarity=0.663  Sum_probs=75.2

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCC-CCCCccceechhhhccCcCCCCcEEEE
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP-DIPGAHLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p-~i~g~~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      +..+++.+++++.+++..++++.+.+   ++....+.||++|+|||++|+.| ++||.+.+.++++++.+...+++++||
T Consensus       112 ~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g~~~~~~~~~~~~l~~~~~~vvVi  191 (479)
T 2hqm_A          112 QKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGTDSDGFFRLEEQPKKVVVV  191 (479)
T ss_dssp             HHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTTGGGSBCHHHHHHCSSCCSEEEEE
T ss_pred             HHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCCcccccchHHHhcccccCCeEEEE
Confidence            45567789999999988888776666   44223799999999999999999 899976677888988888889999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       192 GgG~ig~E~A~~l  204 (479)
T 2hqm_A          192 GAGYIGIELAGVF  204 (479)
T ss_dssp             CSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.46  E-value=3.8e-14  Score=116.61  Aligned_cols=89  Identities=33%  Similarity=0.684  Sum_probs=66.1

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCC------------eeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAG------------EERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLN  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~------------~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~  141 (164)
                      +...+++.+++++.+++..++++++.+..            +...+.||+||+|||++|+.|++||.+++.++++++.+.
T Consensus        95 ~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G~~~~~~~~~~~~~~  174 (500)
T 1onf_A           95 YRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIENTISSDEFFNIK  174 (500)
T ss_dssp             HHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSCTTGGGCEEHHHHTTCC
T ss_pred             HHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCCCCCcccCHHHHhccC
Confidence            34566788999999987777776666621            125799999999999999999999976678889988877


Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      . +++++|||||++|+|+|..|
T Consensus       175 ~-~~~vvViGgG~ig~E~A~~l  195 (500)
T 1onf_A          175 E-SKKIGIVGSGYIAVELINVI  195 (500)
T ss_dssp             C-CSEEEEECCSHHHHHHHHHH
T ss_pred             C-CCeEEEECChHHHHHHHHHH
Confidence            7 89999999999999999876

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.46  E-value=1.2e-13  Score=112.69  Aligned_cols=88  Identities=27%  Similarity=0.470  Sum_probs=74.5

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEE--EEeceEEEecCCCCCCCCCCCccceechhhhc----cCcCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERT--VSAQNFIIAVGGRPTYPDIPGAHLGITSDDLF----SLNKDP  144 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~--~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~----~~~~~~  144 (164)
                      +...+++.+++++.+++.+++++.+.+   ++  +.  +.||++|+|||++|+.|++||.+.++++++++    .+...+
T Consensus        95 ~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g--~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t~~~~~~~~~~l~~~~  172 (466)
T 3l8k_A           95 KRNMSQYETLTFYKGYVKIKDPTHVIVKTDEG--KEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLP  172 (466)
T ss_dssp             HHHHTTCTTEEEESEEEEEEETTEEEEEETTS--CEEEEEEEEEEECCCEEECCCCCTTGGGSBCHHHHHSTTCSCCSCC
T ss_pred             HHHHHHhCCCEEEEeEEEEecCCeEEEEcCCC--cEEEEecCEEEECCCCCccCCCCCCccceEeHHHHHHHHHHHhhCC
Confidence            344556779999999999998877666   34  45  99999999999999999999977788888888    566678


Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ++++|||||++|+|+|..|
T Consensus       173 ~~vvViGgG~~g~e~A~~l  191 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIF  191 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHH
Confidence            9999999999999999876

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.45  E-value=2.3e-13  Score=110.47  Aligned_cols=90  Identities=27%  Similarity=0.375  Sum_probs=74.9

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCcEEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      +.+.+++.+++++.+++.+++++.+.+  .+....+.||++|+|||++|+.|+++|. ..+.++++++.+...+++++||
T Consensus        97 ~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~v~~~~~~~~~~~~~~~vvVi  176 (455)
T 1ebd_A           97 VEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKSLVVI  176 (455)
T ss_dssp             HHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSSEECHHHHHTCSSCCSEEEEE
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccceEecHHHHhccccCCCeEEEE
Confidence            345677889999999888888777666  2211579999999999999999998886 4478888988887788999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       177 GgG~~g~e~A~~l  189 (455)
T 1ebd_A          177 GGGYIGIELGTAY  189 (455)
T ss_dssp             CCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.44  E-value=2.3e-13  Score=110.53  Aligned_cols=90  Identities=24%  Similarity=0.334  Sum_probs=75.8

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEEC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVG  151 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViG  151 (164)
                      +..++++.+++++.+++.+++++.+.+..++..+.||++|+|||++|+.|+++|.  ..++++++++.+...+++++|||
T Consensus        95 ~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~~~~~~~~~~vvIiG  174 (455)
T 2yqu_A           95 VEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVG  174 (455)
T ss_dssp             HHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECHHHHTCCSSCCSEEEEEC
T ss_pred             HHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEechHHhhccccCCCeEEEEC
Confidence            3456777899999998888888877773112679999999999999999998876  36889999988877889999999


Q ss_pred             CcHHHHHhhccc
Q psy7674         152 ASYIALECAGCD  163 (164)
Q Consensus       152 gG~~g~E~A~~l  163 (164)
                      ||++|+|+|..|
T Consensus       175 gG~~g~e~A~~l  186 (455)
T 2yqu_A          175 GGVIGLELGVVW  186 (455)
T ss_dssp             CSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999999865

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.43  E-value=4.5e-13  Score=109.04  Aligned_cols=90  Identities=21%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhhccCcCCCCcEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      +.+.+++.+++++.+++..++.+.+.+   ++....+.||++|+|||++|+.|+++|. ..++++++++.+...+++++|
T Consensus        97 l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vvV  176 (464)
T 2a8x_A           97 VHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTYEEQILSRELPKSIII  176 (464)
T ss_dssp             HHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTTEECHHHHHTCSSCCSEEEE
T ss_pred             HHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCceEEecHHHhhccccCCeEEE
Confidence            346677789999999887787776666   2322579999999999999999998886 448888998888878899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       177 iGgG~~g~E~A~~l  190 (464)
T 2a8x_A          177 AGAGAIGMEFGYVL  190 (464)
T ss_dssp             ECCSHHHHHHHHHH
T ss_pred             ECCcHHHHHHHHHH
Confidence            99999999999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.42  E-value=3.2e-13  Score=109.93  Aligned_cols=89  Identities=27%  Similarity=0.391  Sum_probs=75.0

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEE
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLL  149 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvV  149 (164)
                      ...+++.+++++.+++..++.+.+.+   ++....+.||++|+|||++|+.|+++|.  ..++++++++.+...+++++|
T Consensus       103 ~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~v~~~~~~~~~~~~~~~vvV  182 (470)
T 1dxl_A          103 EGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVV  182 (470)
T ss_dssp             HHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSSEECHHHHTTCSSCCSEEEE
T ss_pred             HHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCcccEEeHHHhhhhhhcCCeEEE
Confidence            45667789999999888888877777   2222579999999999999999998886  368899999888878899999


Q ss_pred             ECCcHHHHHhhccc
Q psy7674         150 VGASYIALECAGCD  163 (164)
Q Consensus       150 iGgG~~g~E~A~~l  163 (164)
                      ||||++|+|+|..|
T Consensus       183 iGgG~~g~e~A~~l  196 (470)
T 1dxl_A          183 IGAGYIGLEMGSVW  196 (470)
T ss_dssp             SCCSHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHH
Confidence            99999999999876

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.41  E-value=3.6e-13  Score=109.98  Aligned_cols=88  Identities=42%  Similarity=0.777  Sum_probs=75.0

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCc--EEEeCCeeEEEEeceEEEecCCCCCCC---CCCCccceechhhhccCcCCCCcEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGAHLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~--~v~v~~~~~~~~~d~liiAtGs~~~~p---~i~g~~~v~~~~~~~~~~~~~~~vv  148 (164)
                      +...+++.+++++.+++.++++.  .+..++  ..+.||++|+|||++|+.|   ++||.+.+.++++++.+...+++++
T Consensus       114 ~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g--~~~~~d~lviAtG~~p~~p~~~~i~G~~~~~~~~~~~~~~~~~~~vv  191 (478)
T 3dk9_A          114 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG--KKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSV  191 (478)
T ss_dssp             HHHHHHHTTCEEEESCEEECSCSSCEEEETT--EEEECSCEEECCCEEECCCCTTTSTTGGGSBCHHHHTTCCSCCSEEE
T ss_pred             HHHHHHhCCcEEEEeEEEEeeCCeEEEEECC--EEEEeeEEEEccCCCCCCCCcCCCCCCceeEchHHhhchhhcCccEE
Confidence            34556778999999998888754  344455  6799999999999999999   8999766788899998888899999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       192 ViGgG~~g~E~A~~l  206 (478)
T 3dk9_A          192 IVGAGYIAVEMAGIL  206 (478)
T ss_dssp             EECCSHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999876

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.40  E-value=1.1e-12  Score=107.31  Aligned_cols=90  Identities=29%  Similarity=0.429  Sum_probs=73.7

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeC-Cee------------EEEEeceEEEecCCCCCCCC-CCCccceechhhhcc
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFA-GEE------------RTVSAQNFIIAVGGRPTYPD-IPGAHLGITSDDLFS  139 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~-~~~------------~~~~~d~liiAtGs~~~~p~-i~g~~~v~~~~~~~~  139 (164)
                      +...+++.+++++.+++..++.+.+.+. .++            ..+.||++|+|||++|+.|+ ++....++++++++.
T Consensus       101 ~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~~i~~~~~v~~~~~~~~  180 (482)
T 1ojt_A          101 LAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALA  180 (482)
T ss_dssp             HHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCSSCCCCTTEECHHHHTT
T ss_pred             HHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCCCCCccCcEEcHHHHhc
Confidence            3456677899999998887887777662 111            46899999999999999887 674356889999988


Q ss_pred             CcCCCCcEEEECCcHHHHHhhccc
Q psy7674         140 LNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       140 ~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +.+.+++++|||||++|+|+|..|
T Consensus       181 ~~~~~~~vvViGgG~ig~E~A~~l  204 (482)
T 1ojt_A          181 LKEVPGKLLIIGGGIIGLEMGTVY  204 (482)
T ss_dssp             CCCCCSEEEEESCSHHHHHHHHHH
T ss_pred             ccccCCeEEEECCCHHHHHHHHHH
Confidence            888899999999999999999876

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.40  E-value=8e-13  Score=107.60  Aligned_cols=88  Identities=36%  Similarity=0.636  Sum_probs=78.2

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCC-CCCCCCccceechhhhccCcCCCCcEEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPT-YPDIPGAHLGITSDDLFSLNKDPGKVLLV  150 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~-~p~i~g~~~v~~~~~~~~~~~~~~~vvVi  150 (164)
                      +...+++.+++++.+++.+++++.+.+  ++  ..+.||++++|||++|. .|++||.+.++++++.+.+...+++++||
T Consensus        99 ~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~--~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~~~~~~~~~~~v~Vi  176 (463)
T 4dna_A           99 YRKGLANAGAEILDTRAELAGPNTVKLLASG--KTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIA  176 (463)
T ss_dssp             HHHHHHHHTCEEEESCEEESSSSEEEETTTT--EEEEEEEEEECCCEEECCCTTSTTGGGCBCHHHHTTCSSCCSEEEEE
T ss_pred             HHHHHHhCCCEEEEEEEEEeeCCEEEEecCC--eEEEeCEEEEecCCCcccCCCCCCccccccHHHHhhhhcCCCeEEEE
Confidence            445667789999999999999888888  45  78999999999999999 99999987788999999888889999999


Q ss_pred             CCcHHHHHhhccc
Q psy7674         151 GASYIALECAGCD  163 (164)
Q Consensus       151 GgG~~g~E~A~~l  163 (164)
                      |||++|+|+|..|
T Consensus       177 GgG~~g~e~A~~l  189 (463)
T 4dna_A          177 GGGYIAVEFANIF  189 (463)
T ss_dssp             CCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.37  E-value=1.6e-12  Score=106.77  Aligned_cols=90  Identities=19%  Similarity=0.309  Sum_probs=75.1

Q ss_pred             hHHHHhhcCceEEeeEEEEeeC------cEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDK------HRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNK  142 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~------~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~  142 (164)
                      +.+++++.|++++.+++.+++.      +.+.+   +++...+.||++++|||++|+.|+++|.  ..++++++++.+..
T Consensus       101 ~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~i~g~~~~~v~~~~~~~~~~~  180 (499)
T 1xdi_A          101 ITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDLDA  180 (499)
T ss_dssp             HHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGGCCCSSSEEEGGGGGGCSS
T ss_pred             HHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCCCcCcEEehhHhhhhhc
Confidence            4566778899999999888887      66666   3411379999999999999999998886  45788899888888


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l  201 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAY  201 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            889999999999999999865

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.37  E-value=1.4e-12  Score=105.68  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=65.7

Q ss_pred             HHHHhhcCceEEee-EEEEeeC--cEEEe----CCeeEEEEeceEEEecCCCCCCCCCCCcccee---chhhhccCc---
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDK--HRVKF----AGEERTVSAQNFIIAVGGRPTYPDIPGAHLGI---TSDDLFSLN---  141 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~--~~v~v----~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~---~~~~~~~~~---  141 (164)
                      +.++++.+++++.+ +++.+|.  +.+.+    +++...+.||+||||||++|+.|+++|. .++   +.+++..+.   
T Consensus        64 ~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~-~~~~~~~~~~~~~l~~~~  142 (437)
T 4eqs_A           64 EKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESD-ITFTLRNLEDTDAIDQFI  142 (437)
T ss_dssp             HHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCT-TEECCSSHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCc-eEEeeccHHHHHHHHHhh
Confidence            45677889999876 5677764  44444    3334579999999999999999999984 333   344444332   


Q ss_pred             --CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 --KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 --~~~~~vvViGgG~~g~E~A~~l  163 (164)
                        ..+++++|||||++|+|+|..|
T Consensus       143 ~~~~~~~vvViGgG~ig~E~A~~l  166 (437)
T 4eqs_A          143 KANQVDKVLVVGAGYVSLEVLENL  166 (437)
T ss_dssp             HHHTCCEEEEECCSHHHHHHHHHH
T ss_pred             hccCCcEEEEECCccchhhhHHHH
Confidence              2478999999999999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.36  E-value=1.6e-12  Score=107.50  Aligned_cols=83  Identities=34%  Similarity=0.536  Sum_probs=73.2

Q ss_pred             hhcCceEE-eeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhc-cCcCCC-CcEEEECCc
Q psy7674          79 EKNKIDYF-NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLF-SLNKDP-GKVLLVGAS  153 (164)
Q Consensus        79 ~~~gv~~~-~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~-~~~~~~-~~vvViGgG  153 (164)
                      ++.+++++ .+++.+++++++.+++  ..+.||++|+|||++|..|+++|.  ..++++++++ .+...+ ++++|||||
T Consensus       146 ~~~gv~~~~~~~v~~i~~~~v~~~g--~~~~~d~lViATGs~p~~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG  223 (523)
T 1mo9_A          146 EQLNLEYILNCPAKVIDNHTVEAAG--KVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGS  223 (523)
T ss_dssp             HTSCCCEEESSCCEEEETTEEEETT--EEEEBSCEEECCCEECCCCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCS
T ss_pred             ccCCcEEEEeeEEEEeeCCEEEECC--EEEEeCEEEECCCCCCCCCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCC
Confidence            67899998 8888889888888775  679999999999999999999987  3488999988 777778 999999999


Q ss_pred             HHHHHhhccc
Q psy7674         154 YIALECAGCD  163 (164)
Q Consensus       154 ~~g~E~A~~l  163 (164)
                      ++|+|+|..|
T Consensus       224 ~~g~E~A~~l  233 (523)
T 1mo9_A          224 KTAVEYGCFF  233 (523)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.36  E-value=1.9e-12  Score=105.59  Aligned_cols=90  Identities=20%  Similarity=0.355  Sum_probs=74.5

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVL  148 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vv  148 (164)
                      +...+++.+++++.+++.+++++.+.+   ++....+.||++|+|||++|..|+.++.  ..++++++++.+...+++++
T Consensus       105 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~  184 (476)
T 3lad_A          105 VASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLG  184 (476)
T ss_dssp             HHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSCCCSSSEEEHHHHTSCSSCCSEEE
T ss_pred             HHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcccEEechhhhccccCCCeEE
Confidence            345667789999999999888777666   3323579999999999999987765443  67889999988888899999


Q ss_pred             EECCcHHHHHhhccc
Q psy7674         149 LVGASYIALECAGCD  163 (164)
Q Consensus       149 ViGgG~~g~E~A~~l  163 (164)
                      |||||++|+|+|..|
T Consensus       185 ViGgG~~g~e~A~~l  199 (476)
T 3lad_A          185 VIGAGVIGLELGSVW  199 (476)
T ss_dssp             EECCSHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHH
Confidence            999999999999875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.35  E-value=1.7e-13  Score=108.74  Aligned_cols=88  Identities=25%  Similarity=0.339  Sum_probs=68.0

Q ss_pred             hHHHHhhcCceEEee-EEEEeeCc--EEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceec---hhhhccCcC---CC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGIT---SDDLFSLNK---DP  144 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~~--~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~---~~~~~~~~~---~~  144 (164)
                      ..+++++.+++++.+ ++..+|+.  ++..++  ..+.||++|+|||++|+.|++||.+++++   .+++..+.+   .+
T Consensus        66 ~~~~~~~~~v~~~~g~~v~~id~~~~~V~~~g--~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~  143 (367)
T 1xhc_A           66 SLDWYRKRGIEIRLAEEAKLIDRGRKVVITEK--GEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENS  143 (367)
T ss_dssp             CHHHHHHHTEEEECSCCEEEEETTTTEEEESS--CEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHH
T ss_pred             CHHHHHhCCcEEEECCEEEEEECCCCEEEECC--cEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcC
Confidence            456778889999998 57888754  444344  67999999999999999999998655554   455544432   24


Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ++++|||||++|+|+|..|
T Consensus       144 ~~vvViGgG~~g~E~A~~l  162 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNL  162 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHH
Confidence            8999999999999999876

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.35  E-value=5.2e-12  Score=97.03  Aligned_cols=90  Identities=18%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             hHHHHhhcCceEEeeEEEEee--Cc--EEEeCCeeEEEEeceEEEecCCCCCCCCCCCcc-----ceechhhhccCc--C
Q psy7674          74 YEKELEKNKIDYFNAKAVFVD--KH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH-----LGITSDDLFSLN--K  142 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~--~~--~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~-----~v~~~~~~~~~~--~  142 (164)
                      +...+++.++++...++....  ..  .+..++ ...+.||++|+|||++|+.|++||.+     .+..+.......  .
T Consensus        72 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~  150 (314)
T 4a5l_A           72 MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEE-GKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIF  150 (314)
T ss_dssp             HHHHHHHTTCEEECCCEEEEECSSSSEEEEETT-CCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGG
T ss_pred             HHHHHhhcCcEEEEeEEEEeecCCCceEEEECC-CeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhc
Confidence            455667788988877665542  22  232322 26899999999999999999999961     233333333222  3


Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+++++|||||++|+|+|..|+
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~  172 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLT  172 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHT
T ss_pred             CCCeEEEECCChHHHHHHHHHH
Confidence            4689999999999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.34  E-value=9.6e-12  Score=102.83  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC-------cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhc
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK-------HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLF  138 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~-------~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~  138 (164)
                      .+...++++|++++.+ ++..++.       ..+.+ ++  ..+.||++|+|||++|+.|++||. +    .+..+....
T Consensus       272 ~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g--~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~  349 (521)
T 1hyu_A          272 ALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASG--AVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCD  349 (521)
T ss_dssp             HHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTS--CEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCC
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCC--CEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCc
Confidence            3456677889999998 7777753       23444 44  579999999999999999999986 2    233333222


Q ss_pred             cCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         139 SLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       139 ~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .....+++|+|||||++|+|+|..|
T Consensus       350 ~~~~~~k~V~ViGgG~~g~E~A~~L  374 (521)
T 1hyu_A          350 GPLFKGKRVAVIGGGNSGVEAAIDL  374 (521)
T ss_dssp             GGGGBTSEEEEECCSHHHHHHHHHH
T ss_pred             hhhcCCCeEEEECCCHHHHHHHHHH
Confidence            1223468999999999999999876

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.34  E-value=8.2e-13  Score=108.47  Aligned_cols=80  Identities=34%  Similarity=0.518  Sum_probs=71.2

Q ss_pred             CceEEeeEEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCcCCCCcEEEECCcHHHHH
Q psy7674          82 KIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLNKDPGKVLLVGASYIALE  158 (164)
Q Consensus        82 gv~~~~~~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~~~~~~vvViGgG~~g~E  158 (164)
                      +++++.+++.+.+.+++.+ ++  ..+.||++|+|||++|+.|++++.  ++++++++++.+...+++++|||||++|+|
T Consensus       111 ~~~~~~g~a~~~~~~~v~~~~~--~~~~~d~lViATGs~p~~p~~~~~~~~~v~t~~~~~~~~~~~k~vvViGgG~ig~E  188 (492)
T 3ic9_A          111 EQDKIRGFAKFLDEHTLQVDDH--SQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLE  188 (492)
T ss_dssp             GGGEEESCEEEEETTEEEETTT--EEEEEEEEEECCCEECCCCHHHHTTGGGEECHHHHTTCSSCCSEEEEESSCHHHHH
T ss_pred             CeeEEEEEEEEecCCEEEEcCC--cEEEeCEEEEccCCCCcCCCCCCccCCcEEcHHHHhhhhhcCCeEEEECCCHHHHH
Confidence            5778899999999999988 55  689999999999999999986653  678999999998888999999999999999


Q ss_pred             hhccc
Q psy7674         159 CAGCD  163 (164)
Q Consensus       159 ~A~~l  163 (164)
                      +|..|
T Consensus       189 ~A~~l  193 (492)
T 3ic9_A          189 LGQAL  193 (492)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.33  E-value=3.1e-12  Score=104.67  Aligned_cols=90  Identities=31%  Similarity=0.613  Sum_probs=75.8

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC-CCCCCCccceechhhhccCcCCCCcEEEECC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGAHLGITSDDLFSLNKDPGKVLLVGA  152 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~-~p~i~g~~~v~~~~~~~~~~~~~~~vvViGg  152 (164)
                      +...+++.+++++.+++.+++.+.+.+..+...+.||++++|||++|. .|++||.+.+.++++++.+...+++++||||
T Consensus       120 ~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~~~~~~~~~~~v~ViGg  199 (484)
T 3o0h_A          120 YREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIFDLEKLPKSIVIVGG  199 (484)
T ss_dssp             HHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSBCTTTGGGCSSCCSEEEEECC
T ss_pred             HHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccccHHHHHhHHhcCCcEEEECc
Confidence            345567789999999999999988888311268999999999999999 8999998777888999888888999999999


Q ss_pred             cHHHHHhhccc
Q psy7674         153 SYIALECAGCD  163 (164)
Q Consensus       153 G~~g~E~A~~l  163 (164)
                      |++|+|+|..|
T Consensus       200 G~~g~e~A~~l  210 (484)
T 3o0h_A          200 GYIGVEFANIF  210 (484)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.31  E-value=4.7e-12  Score=101.62  Aligned_cols=85  Identities=25%  Similarity=0.353  Sum_probs=66.8

Q ss_pred             HHhhcCceEEeeE-EEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCC-CCc-ccee---chhhhccCc---CCC
Q psy7674          77 ELEKNKIDYFNAK-AVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDI-PGA-HLGI---TSDDLFSLN---KDP  144 (164)
Q Consensus        77 ~l~~~gv~~~~~~-~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i-~g~-~~v~---~~~~~~~~~---~~~  144 (164)
                      ++++.+++++.++ +..++.  +++.+ ++  ..+.||+||+|||++|+.|++ ||. ++++   +++++..+.   ..+
T Consensus        68 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~  145 (408)
T 2gqw_A           68 CKRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQ  145 (408)
T ss_dssp             CTTSCSCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTT
T ss_pred             HHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcC
Confidence            4567799999985 788874  56766 44  579999999999999999998 886 3443   566654443   247


Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ++++|||||++|+|+|..|
T Consensus       146 ~~vvViGgG~~g~E~A~~l  164 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATA  164 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHH
Confidence            9999999999999999876

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.30  E-value=6e-12  Score=96.95  Aligned_cols=88  Identities=16%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             HHHHhhcCceEEeeEE-EEee-C-cE-EEeCCeeEEEEeceEEEecCCCCCCCCCCCcc-----ceechhhhccCcCCCC
Q psy7674          75 EKELEKNKIDYFNAKA-VFVD-K-HR-VKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH-----LGITSDDLFSLNKDPG  145 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~-~~~~-~-~~-v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~-----~v~~~~~~~~~~~~~~  145 (164)
                      .....+.+..+..+.. ...+ . .. +..++  ..+.||++|||||++|+.|++||.+     .+..+.........++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k  146 (312)
T 4gcm_A           69 FEHAKKFGAVYQYGDIKSVEDKGEYKVINFGN--KELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNK  146 (312)
T ss_dssp             HHHHHHTTCEEEECCCCEEEECSSCEEEECSS--CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTC
T ss_pred             HHHHhhccccccceeeeeeeeeecceeeccCC--eEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCC
Confidence            3445566666665532 2222 2 22 22244  6899999999999999999999962     2333333223334578


Q ss_pred             cEEEECCcHHHHHhhcccC
Q psy7674         146 KVLLVGASYIALECAGCDK  164 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l~  164 (164)
                      +++|||||++|+|+|..|+
T Consensus       147 ~vvViGgG~ig~E~A~~l~  165 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLT  165 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHH
Confidence            9999999999999998764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.30  E-value=1.3e-11  Score=99.03  Aligned_cols=86  Identities=26%  Similarity=0.399  Sum_probs=67.9

Q ss_pred             HHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccCc---CC
Q psy7674          76 KELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSLN---KD  143 (164)
Q Consensus        76 ~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~~---~~  143 (164)
                      +++++.+++++.+ +++.++.  +++.+ ++  ..+.||+|++|||++|+.|++||.  ++++   +.+++..+.   ..
T Consensus        65 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~  142 (410)
T 3ef6_A           65 DWYGEARIDMLTGPEVTALDVQTRTISLDDG--TTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTS  142 (410)
T ss_dssp             THHHHTTCEEEESCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCT
T ss_pred             HHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhcc
Confidence            5667889999999 7888874  46666 45  679999999999999999999986  4454   455554433   34


Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      +++++|||||++|+|+|..|
T Consensus       143 ~~~vvViGgG~~g~E~A~~l  162 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTA  162 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            78999999999999999765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.29  E-value=1.3e-11  Score=100.12  Aligned_cols=90  Identities=23%  Similarity=0.297  Sum_probs=68.4

Q ss_pred             hHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhc------cC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLF------SL  140 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~------~~  140 (164)
                      ..+++++.+++++.+ ++..++  .+.+.+  .++...+.||++++|||++|+.|++||.  +.++++.++.      ..
T Consensus        64 ~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~  143 (452)
T 3oc4_A           64 TEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPL  143 (452)
T ss_dssp             CHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHH
T ss_pred             CHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence            456778899999765 666776  345555  3344689999999999999999999987  4566654332      22


Q ss_pred             cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 ~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ...+++++|||||++|+|+|..|
T Consensus       144 ~~~~~~vvViGgG~~g~E~A~~l  166 (452)
T 3oc4_A          144 LENSQTVAVIGAGPIGMEAIDFL  166 (452)
T ss_dssp             HHTCSEEEEECCSHHHHHHHHHH
T ss_pred             HhcCCEEEEECCCHHHHHHHHHH
Confidence            34679999999999999999875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.29  E-value=1.3e-11  Score=101.21  Aligned_cols=88  Identities=31%  Similarity=0.471  Sum_probs=71.6

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCCCc------cceechhhhccCcCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGA------HLGITSDDLFSLNKDP  144 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~g~------~~v~~~~~~~~~~~~~  144 (164)
                      +...+++.+++++.+++.+++++.+.+   ++....+.||++|+|||++|.  ++||.      ..+.++++++.+...+
T Consensus       121 ~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~--~ipg~~~~~~~~~~~~~~~~~~~~~~~  198 (491)
T 3urh_A          121 VSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGVEVAFDEKTIVSSTGALALEKVP  198 (491)
T ss_dssp             HHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECC--CBTTBCCCCCSSSEECHHHHTSCSSCC
T ss_pred             HHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC--CCCCcccccCCeeEEehhHhhhhhhcC
Confidence            345577789999999999998877777   333357999999999999874  34432      4578889998888889


Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ++++|||||++|+|+|..|
T Consensus       199 ~~vvViGgG~~g~E~A~~l  217 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVW  217 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHH
Confidence            9999999999999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.26  E-value=1e-11  Score=101.28  Aligned_cols=90  Identities=27%  Similarity=0.416  Sum_probs=69.3

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEE------EEeceEEEecCCCCCCCC-CCCc-cceechhhhccCcC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERT------VSAQNFIIAVGGRPTYPD-IPGA-HLGITSDDLFSLNK  142 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~------~~~d~liiAtGs~~~~p~-i~g~-~~v~~~~~~~~~~~  142 (164)
                      +.+.+++.+++++.++..+.+.+.+.+   ++....      +.||++|+|||++|+.++ ++.. ..+.++++++.+..
T Consensus       102 ~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~~~~~~~v~~~~~~~~~~~  181 (478)
T 1v59_A          102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLKE  181 (478)
T ss_dssp             HHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTCCCCSSSEECHHHHTTCSS
T ss_pred             HHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCCCCCCceEEcHHHHHhhhc
Confidence            345677889999999887777766666   231135      999999999999984322 2211 35889999988877


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus       182 ~~~~vvViGgG~~g~e~A~~l  202 (478)
T 1v59_A          182 IPKRLTIIGGGIIGLEMGSVY  202 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             cCceEEEECCCHHHHHHHHHH
Confidence            889999999999999999876

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.25  E-value=7.6e-12  Score=101.08  Aligned_cols=87  Identities=20%  Similarity=0.391  Sum_probs=67.9

Q ss_pred             HHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--cc---ee---chhhhccCc-
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HL---GI---TSDDLFSLN-  141 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~---v~---~~~~~~~~~-  141 (164)
                      .+++++.+++++.+ .+..++.  +++.+ ++  +.+.||+||+|||++|+.|++||.  ..   ++   +++++..+. 
T Consensus        67 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~  144 (431)
T 1q1r_A           67 PDAYAAQNIQLLGGTQVTAINRDRQQVILSDG--RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRR  144 (431)
T ss_dssp             HHHHHHTTEEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHH
Confidence            46778889999987 4677764  56766 44  579999999999999999999986  33   43   456654433 


Q ss_pred             --CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 --KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 --~~~~~vvViGgG~~g~E~A~~l  163 (164)
                        ..+++++|||||++|+|+|..|
T Consensus       145 ~l~~~~~vvViGgG~~g~E~A~~l  168 (431)
T 1q1r_A          145 QLIADNRLVVIGGGYIGLEVAATA  168 (431)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             HhhcCCeEEEECCCHHHHHHHHHH
Confidence              3479999999999999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.25  E-value=3.4e-12  Score=101.46  Aligned_cols=88  Identities=20%  Similarity=0.238  Sum_probs=67.8

Q ss_pred             hHHHHhhcCceEEee-EEEEeeC--cEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccCc------C
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDK--HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLN------K  142 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~--~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~------~  142 (164)
                      ...++++.+++++.+ ++..++.  +++.+++  ..+.||++++|||++|+.|++||.  +.+++.+++.++.      .
T Consensus        66 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~  143 (384)
T 2v3a_A           66 PGAMAEQLNARILTHTRVTGIDPGHQRIWIGE--EEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAA  143 (384)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEGGGTEEEETT--EEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHT
T ss_pred             HHHHHHhCCcEEEeCCEEEEEECCCCEEEECC--cEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhc
Confidence            345567889999876 4666764  6677765  479999999999999999999986  4566655443321      2


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus       144 ~~~~v~ViGgG~~g~e~A~~l  164 (384)
T 2v3a_A          144 GKRRVLLLGAGLIGCEFANDL  164 (384)
T ss_dssp             TCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            479999999999999999876

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.25  E-value=1.9e-11  Score=97.99  Aligned_cols=88  Identities=26%  Similarity=0.328  Sum_probs=68.9

Q ss_pred             hHHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccCc---
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSLN---  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~~---  141 (164)
                      ...++++.+++++.+ ++..++.  +.+.+ ++  ..+.||++++|||++|+.|++||.  ..++   +.+++..+.   
T Consensus        71 ~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~  148 (415)
T 3lxd_A           71 PAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDG--SAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAEL  148 (415)
T ss_dssp             CHHHHHHTTEEEEETCCEEEEETTTTEEEETTS--CEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHH
T ss_pred             CHHHHHHCCcEEEeCCEEEEEECCCCEEEECCC--CEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHh
Confidence            356778899999998 7888874  45666 44  689999999999999999999986  4454   455554432   


Q ss_pred             CC-CCcEEEECCcHHHHHhhccc
Q psy7674         142 KD-PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~-~~~vvViGgG~~g~E~A~~l  163 (164)
                      .. +++++|||||++|+|+|..|
T Consensus       149 ~~~~~~vvViGgG~~g~e~A~~l  171 (415)
T 3lxd_A          149 DAGAKNAVVIGGGYIGLEAAAVL  171 (415)
T ss_dssp             HTTCCEEEEECCSHHHHHHHHHH
T ss_pred             hhcCCeEEEECCCHHHHHHHHHH
Confidence            23 78999999999999999765

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.23  E-value=1.7e-11  Score=100.55  Aligned_cols=90  Identities=29%  Similarity=0.356  Sum_probs=67.3

Q ss_pred             hHHHHhhcCceEEee-EEEEee--CcEEEeC--CeeEEEEeceEEEecCCCCCCCCCCCcc-------------ceec--
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVD--KHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPGAH-------------LGIT--  133 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v~--~~~~~~~~d~liiAtGs~~~~p~i~g~~-------------~v~~--  133 (164)
                      ..+.+++.|++++.+ ++..++  .+.+.+.  ++...+.||++|+|||++|+.|++||.+             ++++  
T Consensus        98 ~~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~  177 (490)
T 2bc0_A           98 DKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVK  177 (490)
T ss_dssp             CHHHHHHTTCEEETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEECCCSCBTCCBCTTCTTCCBSSTTEEECS
T ss_pred             CHHHHHhCCCEEEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCcCCCCCCCccccccccccccccCCEEEeC
Confidence            456778889999776 467776  4566663  3335799999999999999999888743             3443  


Q ss_pred             ----hhhhccCc--CCCCcEEEECCcHHHHHhhccc
Q psy7674         134 ----SDDLFSLN--KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       134 ----~~~~~~~~--~~~~~vvViGgG~~g~E~A~~l  163 (164)
                          .++++...  ..+++++|||||++|+|+|..|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l  213 (490)
T 2bc0_A          178 LYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAF  213 (490)
T ss_dssp             SHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHH
Confidence                23333333  5679999999999999999876

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.23  E-value=3.1e-11  Score=96.58  Aligned_cols=88  Identities=26%  Similarity=0.445  Sum_probs=68.5

Q ss_pred             hHHHHhhcCceEEeeEEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccCc---C
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSLN---K  142 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~~---~  142 (164)
                      ..+++.+.+++++..+++.++.  +.+.+ ++  ..+.||+|++|||++|+.|++||.  .+++   +.+++..+.   .
T Consensus        63 ~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~  140 (404)
T 3fg2_P           63 PEKFFQDQAIELISDRMVSIDREGRKLLLASG--TAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMP  140 (404)
T ss_dssp             CHHHHHHTTEEEECCCEEEEETTTTEEEESSS--CEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGG
T ss_pred             CHHHHHhCCCEEEEEEEEEEECCCCEEEECCC--CEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhh
Confidence            4577888999998877788874  45666 44  679999999999999999999986  4555   344444332   2


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l  161 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATA  161 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHH
Confidence            468999999999999999765

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.22  E-value=1.7e-11  Score=99.30  Aligned_cols=90  Identities=26%  Similarity=0.412  Sum_probs=66.5

Q ss_pred             hHHHHhhcCceEEee-EEEEee--CcEEEe-C---CeeEEEEeceEEEecCCCCCCCCCCCc--cceech---hhhccCc
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF-A---GEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITS---DDLFSLN  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~---~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~---~~~~~~~  141 (164)
                      +.+++++.|++++.+ .+..++  .+++.+ +   ++...+.||++|+|||++|+.|++||.  ++++++   +++..+.
T Consensus        62 ~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~  141 (447)
T 1nhp_A           62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLK  141 (447)
T ss_dssp             CHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHH
T ss_pred             CHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHH
Confidence            456778889999776 455564  466666 2   322358999999999999999999986  456653   4433321


Q ss_pred             ---C--CCCcEEEECCcHHHHHhhccc
Q psy7674         142 ---K--DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ---~--~~~~vvViGgG~~g~E~A~~l  163 (164)
                         .  .+++++|||||++|+|+|..|
T Consensus       142 ~~~~~~~~~~vvIiG~G~~g~e~A~~l  168 (447)
T 1nhp_A          142 QKTVDPEVNNVVVIGSGYIGIEAAEAF  168 (447)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHH
T ss_pred             HHhhhcCCCeEEEECCCHHHHHHHHHH
Confidence               2  679999999999999999875

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.21  E-value=1.8e-11  Score=99.20  Aligned_cols=90  Identities=26%  Similarity=0.386  Sum_probs=68.0

Q ss_pred             hHHHHhhcCceEEee-EEEEee--CcEEEe-C---CeeEEEEeceEEEecCCCCCCCCCCCc--cceech------hhhc
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF-A---GEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITS------DDLF  138 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~---~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~------~~~~  138 (164)
                      +.+.+++.+++++.+ ++..++  .+++.+ +   ++...+.||++++|||++|+.|++||.  ++++++      ++++
T Consensus        64 ~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~  143 (452)
T 2cdu_A           64 SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLF  143 (452)
T ss_dssp             CHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHH
T ss_pred             CHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHH
Confidence            356778889999777 466675  456666 2   223679999999999999999999986  445542      2344


Q ss_pred             cCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         139 SLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       139 ~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .....+++++|||||++|+|+|..|
T Consensus       144 ~~~~~~~~vvViGgG~~g~E~A~~l  168 (452)
T 2cdu_A          144 EEAPKAKTITIIGSGYIGAELAEAY  168 (452)
T ss_dssp             HHGGGCSEEEEECCSHHHHHHHHHH
T ss_pred             HHhccCCeEEEECcCHHHHHHHHHH
Confidence            4445689999999999999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.19  E-value=5e-12  Score=104.18  Aligned_cols=84  Identities=25%  Similarity=0.407  Sum_probs=61.9

Q ss_pred             hcCceEEeeEEEEeeC--cEEEeC-------------------CeeEEEEeceEEEecCCCCCCCCCCCc-ccee---ch
Q psy7674          80 KNKIDYFNAKAVFVDK--HRVKFA-------------------GEERTVSAQNFIIAVGGRPTYPDIPGA-HLGI---TS  134 (164)
Q Consensus        80 ~~gv~~~~~~~~~~~~--~~v~v~-------------------~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~---~~  134 (164)
                      +.+++|+.++++.+|.  +++++.                   ++...+.||+||||||++|+.|++||. ++.+   +.
T Consensus       108 ~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~  187 (502)
T 4g6h_A          108 KGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEI  187 (502)
T ss_dssp             SSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSH
T ss_pred             cCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCH
Confidence            4589999999998874  556541                   223679999999999999999999997 5443   33


Q ss_pred             hhhccCc--------------C------CCCcEEEECCcHHHHHhhccc
Q psy7674         135 DDLFSLN--------------K------DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       135 ~~~~~~~--------------~------~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +|+..+.              .      ...+++|||||++|+|+|..|
T Consensus       188 ~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l  236 (502)
T 4g6h_A          188 PNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGEL  236 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHH
Confidence            3333221              0      124799999999999999875

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.15  E-value=8.9e-11  Score=90.02  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC-------cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhc
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK-------HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLF  138 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~-------~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~  138 (164)
                      .+++.+++.+++++.+ ++..++.       ..+.+ ++  ..+.||++|+|||++|..|++||. +    .+..+....
T Consensus        61 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~  138 (310)
T 1fl2_A           61 ALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG--AVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCD  138 (310)
T ss_dssp             HHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS--CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHH
T ss_pred             HHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCc
Confidence            4556677889999998 7777753       23444 34  579999999999999998889886 2    244443332


Q ss_pred             cCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         139 SLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       139 ~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .....+++++|||+|++|+|+|..|
T Consensus       139 ~~~~~~~~v~VvG~G~~g~e~A~~l  163 (310)
T 1fl2_A          139 GPLFKGKRVAVIGGGNSGVEAAIDL  163 (310)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHH
T ss_pred             HhhcCCCEEEEECCCHHHHHHHHHH
Confidence            2233568999999999999999876

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.14  E-value=6e-11  Score=96.09  Aligned_cols=85  Identities=26%  Similarity=0.416  Sum_probs=64.1

Q ss_pred             hhcCceEEee-EEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCCCCCCCc--cceec---hhhhccCcC-----CCC
Q psy7674          79 EKNKIDYFNA-KAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGIT---SDDLFSLNK-----DPG  145 (164)
Q Consensus        79 ~~~gv~~~~~-~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~---~~~~~~~~~-----~~~  145 (164)
                      ++.+++++.+ ++..++.....+  ++....+.||++++|||++|+.|++||.  +.+++   .+++..+..     .++
T Consensus        70 ~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~  149 (449)
T 3kd9_A           70 KKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVE  149 (449)
T ss_dssp             HHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCC
T ss_pred             HhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCC
Confidence            5789999998 777887654444  3322479999999999999999999986  34543   344433322     468


Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      +++|||||++|+|+|..|
T Consensus       150 ~vvViGgG~~g~E~A~~l  167 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAF  167 (449)
T ss_dssp             EEEEECCSHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHH
Confidence            999999999999999875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.14  E-value=9.9e-11  Score=88.85  Aligned_cols=89  Identities=21%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             hHHHHhhc-CceEEeeEEEEeeCc----EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcC
Q psy7674          74 YEKELEKN-KIDYFNAKAVFVDKH----RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNK  142 (164)
Q Consensus        74 ~~~~l~~~-gv~~~~~~~~~~~~~----~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~  142 (164)
                      +.+.+++. +++++.++++.++..    .+.+ ++  ..+.||++|+|||++|+.|++||. .    .++.+........
T Consensus        62 ~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  139 (297)
T 3fbs_A           62 ARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGG--RRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYEL  139 (297)
T ss_dssp             HHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGG
T ss_pred             HHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhh
Confidence            45566666 799988888777532    4444 44  579999999999999999999986 2    2334332222233


Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+++++|||+|++|+|+|..|+
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~  161 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLP  161 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGG
T ss_pred             cCCEEEEEecCccHHHHHHHhh
Confidence            5789999999999999998763

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.13  E-value=6.5e-11  Score=96.82  Aligned_cols=89  Identities=27%  Similarity=0.228  Sum_probs=66.2

Q ss_pred             HHHH-hhcCceEEee-EEEEee--CcEEEe-C---CeeEEEEeceEEEecCCCCCCCCCCCc--cceec---hhhhccCc
Q psy7674          75 EKEL-EKNKIDYFNA-KAVFVD--KHRVKF-A---GEERTVSAQNFIIAVGGRPTYPDIPGA--HLGIT---SDDLFSLN  141 (164)
Q Consensus        75 ~~~l-~~~gv~~~~~-~~~~~~--~~~v~v-~---~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~---~~~~~~~~  141 (164)
                      .+.+ ++.+++++.+ ++..++  .+.+.+ +   ++...+.||++|+|||++|+.|++||.  +++++   ++++..+.
T Consensus        99 ~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~  178 (480)
T 3cgb_A           99 VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERIL  178 (480)
T ss_dssp             HHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHH
T ss_pred             HHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHH
Confidence            4455 4459999886 566675  456666 2   422379999999999999999999986  44553   56655443


Q ss_pred             C-----CCCcEEEECCcHHHHHhhccc
Q psy7674         142 K-----DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~-----~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +     .+++++|||||++|+|+|..|
T Consensus       179 ~~~~~~~~~~vvViGgG~~g~e~A~~l  205 (480)
T 3cgb_A          179 KTLETNKVEDVTIIGGGAIGLEMAETF  205 (480)
T ss_dssp             HHHHSSCCCEEEEECCHHHHHHHHHHH
T ss_pred             HHhhhcCCCeEEEECCCHHHHHHHHHH
Confidence            3     679999999999999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.13  E-value=1.7e-10  Score=89.10  Aligned_cols=90  Identities=19%  Similarity=0.088  Sum_probs=64.7

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCc-------EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhcc
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKH-------RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFS  139 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~-------~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~  139 (164)
                      .+.+.+++.+++++.+++..++..       .+.. ++  ..+.||++|+|||++|+.|++||. +    .+..+.....
T Consensus        70 ~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~  147 (325)
T 2q7v_A           70 RMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYN--GEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDG  147 (325)
T ss_dssp             HHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESS--CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHG
T ss_pred             HHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCH
Confidence            345667788999988877766432       3333 44  579999999999999999999886 2    2333332222


Q ss_pred             CcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         140 LNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       140 ~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ....+++++|||+|++|+|+|..|+
T Consensus       148 ~~~~~~~v~VvG~G~~g~e~A~~l~  172 (325)
T 2q7v_A          148 FFYKGKKVVVIGGGDAAVEEGMFLT  172 (325)
T ss_dssp             GGGTTCEEEEECCSHHHHHHHHHHT
T ss_pred             HHcCCCEEEEECCCHHHHHHHHHHH
Confidence            2334689999999999999998763

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.11  E-value=1.1e-10  Score=96.98  Aligned_cols=87  Identities=22%  Similarity=0.315  Sum_probs=63.3

Q ss_pred             HHhhcCceEEee-EEEEee--CcEEEe-C---CeeEEEEeceEEEecCCCCCCCCCCCc--cceechh---hhccCc---
Q psy7674          77 ELEKNKIDYFNA-KAVFVD--KHRVKF-A---GEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSD---DLFSLN---  141 (164)
Q Consensus        77 ~l~~~gv~~~~~-~~~~~~--~~~v~v-~---~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~---~~~~~~---  141 (164)
                      +.++.+++++.+ +++.++  .+.+.+ +   ++...+.||++++|||++|+.|++||.  ..+++..   ++..+.   
T Consensus        67 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~  146 (565)
T 3ntd_A           67 FKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTI  146 (565)
T ss_dssp             HHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHH
T ss_pred             HHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHH
Confidence            334579999765 677776  345555 2   433579999999999999999999986  4455433   222221   


Q ss_pred             --CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 --KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 --~~~~~vvViGgG~~g~E~A~~l  163 (164)
                        ..+++++|||||++|+|+|..|
T Consensus       147 ~~~~~~~vvViGgG~~g~e~A~~l  170 (565)
T 3ntd_A          147 QMNNVEHATVVGGGFIGLEMMESL  170 (565)
T ss_dssp             HHTTCSEEEEECCSHHHHHHHHHH
T ss_pred             hhCCCCEEEEECCCHHHHHHHHHH
Confidence              3578999999999999999865

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.08  E-value=2.7e-10  Score=88.49  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC---cEE-Ee-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK---HRV-KF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNK  142 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~---~~v-~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~  142 (164)
                      .+.+.+++.+++++.+++..++.   .++ .+ ++  ..+.||++|+|||++|..|++||. .    .+.++........
T Consensus        76 ~l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g--~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~  153 (335)
T 2a87_A           76 EMREQALRFGADLRMEDVESVSLHGPLKSVVTADG--QTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFF  153 (335)
T ss_dssp             HHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTS--CEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGG
T ss_pred             HHHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCC--CEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhc
Confidence            34556777899999888776664   235 44 44  579999999999999999999885 2    2333332222224


Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+++++|||+|++|+|+|..|+
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~  175 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLT  175 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHH
Confidence            5689999999999999998763

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.08  E-value=3e-10  Score=87.90  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC--c--EEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-c--------ceechhhhcc
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK--H--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-H--------LGITSDDLFS  139 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~--~--~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~--------~v~~~~~~~~  139 (164)
                      .+.+.+++.+++++.+++..++.  +  ++.+++  ..+.||++|+|||++|..|++||. .        .+..+.....
T Consensus        75 ~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~--~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  152 (333)
T 1vdc_A           75 KFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDS--KAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDG  152 (333)
T ss_dssp             HHHHHHHHTTCEEECCCCCEEECSSSSEEEECSS--EEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHT
T ss_pred             HHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEECC--cEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCcc
Confidence            34566777899999887666653  2  344444  679999999999999999998886 3        1222222222


Q ss_pred             Cc--CCCCcEEEECCcHHHHHhhcccC
Q psy7674         140 LN--KDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       140 ~~--~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ..  ..+++++|||+|++|+|+|..|+
T Consensus       153 ~~~~~~~~~v~VvG~G~~g~e~A~~l~  179 (333)
T 1vdc_A          153 AAPIFRNKPLAVIGGGDSAMEEANFLT  179 (333)
T ss_dssp             TSGGGTTSEEEEECCSHHHHHHHHHHT
T ss_pred             chhhcCCCeEEEECCChHHHHHHHHHH
Confidence            22  45689999999999999998763

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.07  E-value=2.3e-10  Score=87.72  Aligned_cols=89  Identities=20%  Similarity=0.155  Sum_probs=64.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEee--Cc--EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNK  142 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~--~~--~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~  142 (164)
                      .+.+.+++.+++++.+++..++  .+  .+.+ ++  ..+.||++|+|||++|+.|++||. +    .+..+........
T Consensus        64 ~l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  141 (311)
T 2q0l_A           64 PWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDG--KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFY  141 (311)
T ss_dssp             HHHHHHHTTSCEEECSCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGG
T ss_pred             HHHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCC--CEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhc
Confidence            3455677789999887776664  34  3434 44  579999999999999999999985 2    2444333322234


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||+|++|+|+|..|
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l  162 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYL  162 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            568999999999999999865

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.06  E-value=2.1e-11  Score=100.13  Aligned_cols=82  Identities=21%  Similarity=0.344  Sum_probs=61.2

Q ss_pred             hcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc------ccee---chhhhccCc---CC
Q psy7674          80 KNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA------HLGI---TSDDLFSLN---KD  143 (164)
Q Consensus        80 ~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~------~~v~---~~~~~~~~~---~~  143 (164)
                      +.+++++.+ ++..+|  .+++.+ ++  ..+.||+||+|||++|+.|++++.      ..+.   +.+++..+.   ..
T Consensus       102 ~~gv~~~~g~~v~~id~~~~~V~~~~g--~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~  179 (493)
T 1m6i_A          102 NGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE  179 (493)
T ss_dssp             TCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHH
T ss_pred             cCCeEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhc
Confidence            468999988 667676  466777 45  679999999999999998876541      2232   445544433   24


Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      +++++|||||++|+|+|..|
T Consensus       180 ~~~vvViGgG~iG~E~A~~l  199 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACAL  199 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHH
Confidence            79999999999999999875

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.04  E-value=7.4e-11  Score=96.22  Aligned_cols=86  Identities=14%  Similarity=0.270  Sum_probs=61.3

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC-CCCCCCCc--cceechhhhc----------c
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA--HLGITSDDLF----------S  139 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~-~~p~i~g~--~~v~~~~~~~----------~  139 (164)
                      .+.+++++.+++++.+...  . +.+++++  ..+.||+||+|||++| +.|++||.  +.++++.++.          .
T Consensus        64 ~~~~~~~~~gv~~~~~~~v--~-~~V~~~~--~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~  138 (460)
T 1cjc_A           64 TFTQTARSDRCAFYGNVEV--G-RDVTVQE--LQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRE  138 (460)
T ss_dssp             HHHHHHTSTTEEEEBSCCB--T-TTBCHHH--HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTT
T ss_pred             HHHHHHHhCCcEEEeeeEE--e-eEEEecc--ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccc
Confidence            3456777889999876322  1 2333332  2468999999999996 77889986  5677765542          1


Q ss_pred             Cc-C-CCCcEEEECCcHHHHHhhccc
Q psy7674         140 LN-K-DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       140 ~~-~-~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +. . .+++++|||||++|+|+|..|
T Consensus       139 ~~~~~~~~~vvVIGgG~~g~e~A~~L  164 (460)
T 1cjc_A          139 LAPDLSCDTAVILGQGNVALDVARIL  164 (460)
T ss_dssp             CCCCTTSSEEEEESCSHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHH
Confidence            11 1 368999999999999999876

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.02  E-value=1.3e-09  Score=90.49  Aligned_cols=89  Identities=15%  Similarity=0.145  Sum_probs=62.5

Q ss_pred             hHHHHhhcCc--eEEee-EEEEee--Cc----EEEe-CCeeEEEEeceEEEecC--CCCCCCCCCCcc----c-eechhh
Q psy7674          74 YEKELEKNKI--DYFNA-KAVFVD--KH----RVKF-AGEERTVSAQNFIIAVG--GRPTYPDIPGAH----L-GITSDD  136 (164)
Q Consensus        74 ~~~~l~~~gv--~~~~~-~~~~~~--~~----~v~v-~~~~~~~~~d~liiAtG--s~~~~p~i~g~~----~-v~~~~~  136 (164)
                      +...+++.++  .+..+ +++.++  ..    ++++ ++  +.+.||+||+|||  ++|+.|++||.+    . +.+.+.
T Consensus        93 l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G--~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~  170 (540)
T 3gwf_A           93 LEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG--EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAW  170 (540)
T ss_dssp             HHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS--CEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEGGGC
T ss_pred             HHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC--CEEEeCEEEECCcccccCCCCCCCCccccCCCEEEeecC
Confidence            4455667777  66655 455543  33    3444 44  5799999999999  799999999962    1 334333


Q ss_pred             hccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         137 LFSLNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       137 ~~~~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .......+++|+|||+|++|+|+|..|+
T Consensus       171 ~~~~~~~~krV~VIG~G~sgve~a~~l~  198 (540)
T 3gwf_A          171 PEGKSLAGRRVGVIGTGSTGQQVITSLA  198 (540)
T ss_dssp             CSSCCCTTSEEEEECCSHHHHHHHHHHT
T ss_pred             CCccccccceEEEECCCchHHHHHHHHH
Confidence            3344456799999999999999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.02  E-value=7.3e-10  Score=84.71  Aligned_cols=90  Identities=16%  Similarity=0.101  Sum_probs=66.3

Q ss_pred             hhHHHHhhcCceEEeeEEEEe-eC--cEEE--eCCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFV-DK--HRVK--FAGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNK  142 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~-~~--~~v~--v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~  142 (164)
                      .+...+++.+++++.+++..+ +.  ....  +..+. .+.||++++|||++|+.|++||. .    .+..+........
T Consensus        67 ~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  145 (315)
T 3r9u_A           67 PWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFY  145 (315)
T ss_dssp             HHHHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGG
T ss_pred             HHHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeeccccccc
Confidence            345677788999998877776 43  3344  53322 79999999999999999999886 2    2334433333334


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||+|++|+|+|..|
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l  166 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYL  166 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHH
T ss_pred             CcCEEEEECCCHHHHHHHHHH
Confidence            578999999999999999875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.01  E-value=7.9e-10  Score=84.92  Aligned_cols=85  Identities=13%  Similarity=0.225  Sum_probs=56.8

Q ss_pred             HHhhc-CceEEeeEEEEee---C--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhhccCcCCC
Q psy7674          77 ELEKN-KIDYFNAKAVFVD---K--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDLFSLNKDP  144 (164)
Q Consensus        77 ~l~~~-gv~~~~~~~~~~~---~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~~~~~~~~  144 (164)
                      ++.++ ++.++.+++..++   .  .++.. ++  +.+.||++|||||++|+.|++||.     +.+..+.........+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~  146 (304)
T 4fk1_A           69 EVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDH--TKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKD  146 (304)
T ss_dssp             HHTTSTTEEEEECCEEEEEECTTSCEEEEETTC--CEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTT
T ss_pred             HHHhcCCEEEEeeEEEEeeecCCCcEEEEECCC--CEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcC
Confidence            33443 5667666665542   2  23444 44  689999999999999999999996     2355554444444456


Q ss_pred             CcEEEECCcH-HHHHhhccc
Q psy7674         145 GKVLLVGASY-IALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~-~g~E~A~~l  163 (164)
                      ++++|||||. +++|+|..+
T Consensus       147 ~~~~VIggG~~~~~e~a~~~  166 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLV  166 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHH
T ss_pred             CceeeecCCCchhhhHHHHH
Confidence            7788887775 567887654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.01  E-value=7.5e-10  Score=85.42  Aligned_cols=92  Identities=15%  Similarity=0.101  Sum_probs=66.3

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC--cEEEe--C--CeeEEEEeceEEEecCCCCCCCCCCCc-----cceechhhhccC-
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK--HRVKF--A--GEERTVSAQNFIIAVGGRPTYPDIPGA-----HLGITSDDLFSL-  140 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~--~~v~v--~--~~~~~~~~d~liiAtGs~~~~p~i~g~-----~~v~~~~~~~~~-  140 (164)
                      .+...+++.+++++.++++.++.  ..+.+  .  .+...+.||++|+|||++|+.|++||.     ..+..+...... 
T Consensus        89 ~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  168 (338)
T 3itj_A           89 RMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAV  168 (338)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTS
T ss_pred             HHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccch
Confidence            45667788899999988777653  33444  1  223678999999999999999999985     133333332222 


Q ss_pred             -cCCCCcEEEECCcHHHHHhhcccC
Q psy7674         141 -NKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       141 -~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                       ...+++++|||+|++|+|+|..|+
T Consensus       169 ~~~~~~~v~vvG~G~~g~e~a~~l~  193 (338)
T 3itj_A          169 PIFRNKPLAVIGGGDSACEEAQFLT  193 (338)
T ss_dssp             GGGTTSEEEEECSSHHHHHHHHHHT
T ss_pred             hhcCCCEEEEECCCHHHHHHHHHHH
Confidence             235689999999999999998763

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.01  E-value=1.2e-09  Score=83.66  Aligned_cols=89  Identities=18%  Similarity=0.125  Sum_probs=63.7

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCc----EEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKH----RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNK  142 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~----~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~  142 (164)
                      .+.+.+++.+++++..++..++..    .+.. ++  ..+.||++|+|||+.|+.|++||. .    .+..+........
T Consensus        75 ~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~  152 (323)
T 3f8d_A           75 VFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRK--GEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLF  152 (323)
T ss_dssp             HHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSS--CEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGG
T ss_pred             HHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCC--CEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHc
Confidence            345667778999988777776532    2333 33  579999999999999999999886 2    2222222222233


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||+|++|+|+|..|
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l  173 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEIL  173 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            568999999999999999765

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.01  E-value=5.5e-10  Score=85.85  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=64.9

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC--cEEE-e-CCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK--HRVK-F-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNKD  143 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~--~~v~-v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~~  143 (164)
                      .+...+++.+++++.+++..++.  +.+. . ++  ..+.||++++|||++|..|++||. .    .+.++.........
T Consensus        67 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~--~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  144 (320)
T 1trb_A           67 RMHEHATKFETEIIFDHINKVDLQNRPFRLNGDN--GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYR  144 (320)
T ss_dssp             HHHHHHHHTTCEEECCCEEEEECSSSSEEEEESS--CEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGT
T ss_pred             HHHHHHHHCCCEEEEeeeeEEEecCCEEEEEeCC--CEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccC
Confidence            34566778899999988777753  2333 2 44  579999999999999999988875 1    23333222222245


Q ss_pred             CCcEEEECCcHHHHHhhcccC
Q psy7674         144 PGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l~  164 (164)
                      +++++|||+|++|+|+|..|+
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~  165 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLS  165 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHH
Confidence            789999999999999998763

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.00  E-value=5.8e-10  Score=93.17  Aligned_cols=90  Identities=19%  Similarity=0.334  Sum_probs=65.1

Q ss_pred             hHHHHhhcCceEEee-EEEEee--CcEEEe----CCeeEEEEeceEEEecCCCCCCCCCCCc---cceechhhhccC---
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVD--KHRVKF----AGEERTVSAQNFIIAVGGRPTYPDIPGA---HLGITSDDLFSL---  140 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~--~~~v~v----~~~~~~~~~d~liiAtGs~~~~p~i~g~---~~v~~~~~~~~~---  140 (164)
                      ++...++.+++++.+ +++.++  .+.+.+    ++....+.||++++|||++|+.|++||.   +.+++..+....   
T Consensus        99 ~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~  178 (588)
T 3ics_A           99 VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRI  178 (588)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHH
T ss_pred             HHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHH
Confidence            345556789999765 566665  455655    2422378999999999999999999985   345554333222   


Q ss_pred             -----cCCCCcEEEECCcHHHHHhhccc
Q psy7674         141 -----NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 -----~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                           ...+++++|||||++|+|+|..|
T Consensus       179 ~~~l~~~~~~~vvViGgG~~g~e~A~~l  206 (588)
T 3ics_A          179 KAYIDEKKPRHATVIGGGFIGVEMVENL  206 (588)
T ss_dssp             HHHHHHHCCSEEEEECCSHHHHHHHHHH
T ss_pred             HHHHhhcCCCeEEEECCCHHHHHHHHHH
Confidence                 13579999999999999999865

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.98  E-value=1.2e-09  Score=84.08  Aligned_cols=89  Identities=10%  Similarity=0.001  Sum_probs=63.1

Q ss_pred             hHHHHhhcCceEEeeEEEEee--Cc--EEEeCCeeEEEEeceEEEecCCCCCCCCCCCc-c----ceechhhhccCcCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVD--KH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA-H----LGITSDDLFSLNKDP  144 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~--~~--~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~-~----~v~~~~~~~~~~~~~  144 (164)
                      +.+.+++.+++++.+++..++  .+  .+..++  ..+.||++|+|||++|+.|++||. .    .+..+.........+
T Consensus        78 ~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~--~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~  155 (319)
T 3cty_A           78 FADHAANYAKIREGVEVRSIKKTQGGFDIETND--DTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKG  155 (319)
T ss_dssp             HHHHHHTTSEEEETCCEEEEEEETTEEEEEESS--SEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBT
T ss_pred             HHHHHHHcCCEEEEeeEEEEEEeCCEEEEEECC--CEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCC
Confidence            445667789999887776665  34  233344  579999999999999999998875 2    233322222222346


Q ss_pred             CcEEEECCcHHHHHhhcccC
Q psy7674         145 GKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l~  164 (164)
                      ++++|||||++|+|+|..|+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~  175 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMS  175 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHH
Confidence            89999999999999998763

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.97  E-value=1.8e-09  Score=89.85  Aligned_cols=89  Identities=15%  Similarity=0.174  Sum_probs=58.4

Q ss_pred             hHHHHhhcCc--eEEee-EEEEee--Cc----EEEe-CCeeEEEEeceEEEecC--CCCCCCCCCCcc-----ceechhh
Q psy7674          74 YEKELEKNKI--DYFNA-KAVFVD--KH----RVKF-AGEERTVSAQNFIIAVG--GRPTYPDIPGAH-----LGITSDD  136 (164)
Q Consensus        74 ~~~~l~~~gv--~~~~~-~~~~~~--~~----~v~v-~~~~~~~~~d~liiAtG--s~~~~p~i~g~~-----~v~~~~~  136 (164)
                      ++..+++.++  .+..+ +++.++  ..    .+++ ++  +.+.||+||+|||  ++|+.|++||.+     .+.+...
T Consensus        93 l~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~~~~  170 (545)
T 3uox_A           93 VNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE--EVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRW  170 (545)
T ss_dssp             HHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT--EEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEGGGC
T ss_pred             HHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC--CEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEcccc
Confidence            3445566666  55544 444442  32    4544 45  6899999999999  899999999972     2334433


Q ss_pred             hcc-------CcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         137 LFS-------LNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       137 ~~~-------~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ...       ....+++|+|||+|++|+|+|..|+
T Consensus       171 ~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la  205 (545)
T 3uox_A          171 PTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAA  205 (545)
T ss_dssp             CBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHT
T ss_pred             cccccccccccccCCCeEEEECCCccHHHHHHHHH
Confidence            333       3345789999999999999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.97  E-value=8e-10  Score=90.00  Aligned_cols=84  Identities=24%  Similarity=0.406  Sum_probs=60.0

Q ss_pred             hcCceEEee-EEEEee--CcEEEe-C---CeeEEEEeceEEEecCCCCCCCCCCCc--ccee---chhhhccCc-----C
Q psy7674          80 KNKIDYFNA-KAVFVD--KHRVKF-A---GEERTVSAQNFIIAVGGRPTYPDIPGA--HLGI---TSDDLFSLN-----K  142 (164)
Q Consensus        80 ~~gv~~~~~-~~~~~~--~~~v~v-~---~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~---~~~~~~~~~-----~  142 (164)
                      +.+++++.+ +++.++  .+.+.+ +   +....+.||++++|||++|+.|++||.  +.++   +.+++..+.     .
T Consensus        78 ~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~  157 (472)
T 3iwa_A           78 NKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAG  157 (472)
T ss_dssp             ---CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTT
T ss_pred             hcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcC
Confidence            478998765 666776  355555 2   433479999999999999999999986  3443   334444333     3


Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus       158 ~~~~vvViGgG~~g~e~A~~l  178 (472)
T 3iwa_A          158 EVSKAVIVGGGFIGLEMAVSL  178 (472)
T ss_dssp             SCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            578999999999999999865

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.97  E-value=1.7e-09  Score=88.20  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=62.7

Q ss_pred             hHHHHhhcCce--EEee-EEEEee--Cc----EEEe-C---CeeEEEEeceEEEecC--CCCCCCCCCCc-c---ceech
Q psy7674          74 YEKELEKNKID--YFNA-KAVFVD--KH----RVKF-A---GEERTVSAQNFIIAVG--GRPTYPDIPGA-H---LGITS  134 (164)
Q Consensus        74 ~~~~l~~~gv~--~~~~-~~~~~~--~~----~v~v-~---~~~~~~~~d~liiAtG--s~~~~p~i~g~-~---~v~~~  134 (164)
                      +...+++.+++  +..+ +++.++  ..    ++++ +   +....+.||+||+|||  ++|+.|++||. .   .+.++
T Consensus       107 l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs  186 (464)
T 2xve_A          107 IKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA  186 (464)
T ss_dssp             HHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEG
T ss_pred             HHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEeh
Confidence            44555667887  6655 555553  22    4554 2   3225789999999999  89999999986 2   24444


Q ss_pred             hhhccCc-CCCCcEEEECCcHHHHHhhccc
Q psy7674         135 DDLFSLN-KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       135 ~~~~~~~-~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+..... ..+++|+|||||++|+|+|..|
T Consensus       187 ~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l  216 (464)
T 2xve_A          187 HDFRDALEFKDKTVLLVGSSYSAEDIGSQC  216 (464)
T ss_dssp             GGCCCGGGGTTSEEEEECCSTTHHHHHHHH
T ss_pred             hhhCCHhHcCCCEEEEEcCCCCHHHHHHHH
Confidence            4444332 2579999999999999999876

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.96  E-value=2.2e-09  Score=83.23  Aligned_cols=90  Identities=17%  Similarity=0.199  Sum_probs=62.2

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--CcEEE-e--CCeeEEEEeceEEEecC--CCCCCCCCCCc-c---ceechhhhccC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--KHRVK-F--AGEERTVSAQNFIIAVG--GRPTYPDIPGA-H---LGITSDDLFSL  140 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~-v--~~~~~~~~~d~liiAtG--s~~~~p~i~g~-~---~v~~~~~~~~~  140 (164)
                      .+.+.+++.+++++.+ +++.++  .+.+. +  ++  ..+.||++|+|||  ++|..|++||. +   ......+....
T Consensus        81 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~--g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  158 (357)
T 4a9w_A           81 YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDG--RQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP  158 (357)
T ss_dssp             HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCS
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCC--CEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCCh
Confidence            3456667789999876 566654  34444 4  33  3799999999999  57778889886 2   12222222222


Q ss_pred             -cCCCCcEEEECCcHHHHHhhcccC
Q psy7674         141 -NKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       141 -~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                       ...+++|+|||||++|+|+|..|+
T Consensus       159 ~~~~~~~v~VvG~G~~g~e~a~~l~  183 (357)
T 4a9w_A          159 APFAGMRVAIIGGGNSGAQILAEVS  183 (357)
T ss_dssp             GGGTTSEEEEECCSHHHHHHHHHHT
T ss_pred             hhcCCCEEEEECCCcCHHHHHHHHH
Confidence             224689999999999999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.96  E-value=3e-10  Score=92.56  Aligned_cols=86  Identities=22%  Similarity=0.342  Sum_probs=61.2

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-CCCCCCCCc--cceechhhhc-----------
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGA--HLGITSDDLF-----------  138 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-~~~p~i~g~--~~v~~~~~~~-----------  138 (164)
                      .+.+++++.+++++.+..  ++ +.++++.  ..+.||+||+|||++ |+.|++||.  +.++++.++.           
T Consensus        66 ~~~~~~~~~~v~~~~~v~--v~-~~v~~~~--~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~  140 (456)
T 1lqt_A           66 QFEKTAEDPRFRFFGNVV--VG-EHVQPGE--LSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQ  140 (456)
T ss_dssp             HHHHHHTSTTEEEEESCC--BT-TTBCHHH--HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTT
T ss_pred             HHHHHHhcCCCEEEeeEE--EC-CEEEECC--CeEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCccccc
Confidence            345667778999987622  32 3344422  247899999999997 688889986  4677665542           


Q ss_pred             cCcC-CCCcEEEECCcHHHHHhhccc
Q psy7674         139 SLNK-DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       139 ~~~~-~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+.. .+++|+|||+|++|+|+|..|
T Consensus       141 ~~~~~~~~~vvVIG~G~~g~e~A~~L  166 (456)
T 1lqt_A          141 VSPDLSGARAVVIGNGNVALDVARIL  166 (456)
T ss_dssp             CCCCCCSSEEEEECCSHHHHHHHHHH
T ss_pred             chhhcCCCEEEEECCCHHHHHHHHHH
Confidence            2222 468999999999999999865

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.92  E-value=2.8e-09  Score=88.74  Aligned_cols=88  Identities=16%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             hHHHHhhcCc--eEEee-EEEEe--eCc----EEEe-CCeeEEEEeceEEEecC--CCCCCCCCCCcc----ceechhhh
Q psy7674          74 YEKELEKNKI--DYFNA-KAVFV--DKH----RVKF-AGEERTVSAQNFIIAVG--GRPTYPDIPGAH----LGITSDDL  137 (164)
Q Consensus        74 ~~~~l~~~gv--~~~~~-~~~~~--~~~----~v~v-~~~~~~~~~d~liiAtG--s~~~~p~i~g~~----~v~~~~~~  137 (164)
                      +++.+++.++  .+..+ +++.+  +..    ++++ ++  +.+.||+||+|||  ++|+.|++||.+    .++.....
T Consensus       105 l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G--~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~  182 (549)
T 4ap3_A          105 LEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG--DEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARW  182 (549)
T ss_dssp             HHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEGGGC
T ss_pred             HHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC--CEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEeccc
Confidence            3455667777  66655 55555  333    4444 44  5799999999999  899999999972    12222222


Q ss_pred             c--cCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         138 F--SLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       138 ~--~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .  .....+++|+|||+|++|+|+|..|
T Consensus       183 ~~~~~~~~~krV~VIG~G~sgve~a~~l  210 (549)
T 4ap3_A          183 PHDGVDFTGKRVGVIGTGSSGIQSIPII  210 (549)
T ss_dssp             CTTCCCCBTCEEEEECCSHHHHHHHHHH
T ss_pred             cccccccCCCEEEEECCCchHHHHHHHH
Confidence            1  2233579999999999999999876

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.91  E-value=7.6e-10  Score=93.99  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=61.2

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEE-EeceEEEecCCCCCCCCCCCc--cceechhhhccCc-CCCCcEEE
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV-SAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSLN-KDPGKVLL  149 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~-~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~~-~~~~~vvV  149 (164)
                      +..++++.|++++.++.       +.  .  ..+ .||+||+|||++|+.|++||.  .++++..+.+... ..+++|+|
T Consensus       431 ~~~~~~~~gv~~~~~~~-------v~--~--~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvV  499 (671)
T 1ps9_A          431 YRRMIEVTGVTLKLNHT-------VT--A--DQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAI  499 (671)
T ss_dssp             HHHHHHHHTCEEEESCC-------CC--S--SSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEE
T ss_pred             HHHHHHHcCCEEEeCcE-------ec--H--HHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEE
Confidence            45667788999877542       11  1  124 899999999999999999986  4577776666543 35689999


Q ss_pred             ECCcHHHHHhhcccC
Q psy7674         150 VGASYIALECAGCDK  164 (164)
Q Consensus       150 iGgG~~g~E~A~~l~  164 (164)
                      ||||++|+|+|..|+
T Consensus       500 IGgG~~g~E~A~~l~  514 (671)
T 1ps9_A          500 IGCGGIGFDTAMYLS  514 (671)
T ss_dssp             ECCHHHHHHHHHHHT
T ss_pred             ECCChhHHHHHHHHH
Confidence            999999999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.90  E-value=3.4e-09  Score=85.74  Aligned_cols=90  Identities=17%  Similarity=0.046  Sum_probs=60.3

Q ss_pred             HHHHhhcCceEEee-EEEEee--Cc--EEEe-C---Ce-eEEEEeceEEEecCC--CCCCCCCCCc-c-------ceech
Q psy7674          75 EKELEKNKIDYFNA-KAVFVD--KH--RVKF-A---GE-ERTVSAQNFIIAVGG--RPTYPDIPGA-H-------LGITS  134 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~--~~--~v~v-~---~~-~~~~~~d~liiAtGs--~~~~p~i~g~-~-------~v~~~  134 (164)
                      ...+++.+..++.+ +++.++  ..  ++++ +   +. ...+.||+||+|||+  +|+.|++||. +       .+.++
T Consensus       122 ~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~  201 (447)
T 2gv8_A          122 RIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHS  201 (447)
T ss_dssp             HHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEG
T ss_pred             HHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEe
Confidence            34444456666555 455553  22  3444 3   42 237999999999998  8888899986 2       24555


Q ss_pred             hhhccCcC-CCCcEEEECCcHHHHHhhcccC
Q psy7674         135 DDLFSLNK-DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       135 ~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+...... .+++|+|||||++|+|+|..|+
T Consensus       202 ~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~  232 (447)
T 2gv8_A          202 SLFREPELFVGESVLVVGGASSANDLVRHLT  232 (447)
T ss_dssp             GGCCCGGGGTTCCEEEECSSHHHHHHHHHHT
T ss_pred             cccCChhhcCCCEEEEEccCcCHHHHHHHHH
Confidence            55443332 4689999999999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.89  E-value=4.9e-09  Score=82.00  Aligned_cols=86  Identities=14%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             hHHHHhhcCceEEee-EEEEeeCc----EEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcC-CCCcE
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDKH----RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNK-DPGKV  147 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~~----~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~-~~~~v  147 (164)
                      +...+++.|++++.+ .+..++..    .+..++  ..+.||++|+|||+.+. |.+|+ ..+.+..+...... ..++|
T Consensus        94 l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~--g~~~~d~vVlAtG~~~~-p~ip~-~~~~~~~~~~~~~~~~~~~v  169 (369)
T 3d1c_A           94 LQVVANHYELNIFENTVVTNISADDAYYTIATTT--ETYHADYIFVATGDYNF-PKKPF-KYGIHYSEIEDFDNFNKGQY  169 (369)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSSSEEEEESS--CCEEEEEEEECCCSTTS-BCCCS-SSCEEGGGCSCGGGSCSSEE
T ss_pred             HHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCC--CEEEeCEEEECCCCCCc-cCCCC-CceechhhcCChhhcCCCEE
Confidence            345567789999887 46656532    343333  25899999999999865 66776 44444444444333 34699


Q ss_pred             EEECCcHHHHHhhccc
Q psy7674         148 LLVGASYIALECAGCD  163 (164)
Q Consensus       148 vViGgG~~g~E~A~~l  163 (164)
                      +|||||++|+|+|..|
T Consensus       170 vVvG~G~~g~e~a~~l  185 (369)
T 3d1c_A          170 VVIGGNESGFDAAYQL  185 (369)
T ss_dssp             EEECCSHHHHHHHHHH
T ss_pred             EEECCCcCHHHHHHHH
Confidence            9999999999999865

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.86  E-value=1.6e-10  Score=93.30  Aligned_cols=65  Identities=22%  Similarity=0.282  Sum_probs=48.9

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-cc---eechhhhccC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-HL---GITSDDLFSL  140 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~~---v~~~~~~~~~  140 (164)
                      .+++++++.||+++.++++.+|+  ++|++ ++  +.+.||+||||||+++. +++||. ++   +.+.+++.++
T Consensus        61 ~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g--~~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~  132 (430)
T 3hyw_A           61 PLAPLLPKFNIEFINEKAESIDPDANTVTTQSG--KKIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALET  132 (430)
T ss_dssp             ESTTTGGGGTEEEECSCEEEEETTTTEEEETTC--CEEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHH
T ss_pred             cHHHHHHHCCcEEEEeEEEEEECCCCEEEECCC--CEEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHH
Confidence            34567888899999999999984  56777 55  68999999999999864 568886 33   3455555443

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.83  E-value=3.4e-09  Score=85.78  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=55.9

Q ss_pred             HHhhcCceEEeeE-EEEeeCc---------EEEe-CC--eeEEEEeceEEEecCCCCCCCC-CCCc--c-ceechhhhcc
Q psy7674          77 ELEKNKIDYFNAK-AVFVDKH---------RVKF-AG--EERTVSAQNFIIAVGGRPTYPD-IPGA--H-LGITSDDLFS  139 (164)
Q Consensus        77 ~l~~~gv~~~~~~-~~~~~~~---------~v~v-~~--~~~~~~~d~liiAtGs~~~~p~-i~g~--~-~v~~~~~~~~  139 (164)
                      ..++.++++..+. ++.++..         ++.. ++  ....+.||+||+|||++|.+|+ +++.  . .++...+...
T Consensus       136 ~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~  215 (463)
T 3s5w_A          136 VASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLE  215 (463)
T ss_dssp             HHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHH
T ss_pred             HHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHh
Confidence            3445678888774 6665422         3333 22  2227999999999999998887 3332  2 3443322211


Q ss_pred             -CcC------CCCcEEEECCcHHHHHhhccc
Q psy7674         140 -LNK------DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       140 -~~~------~~~~vvViGgG~~g~E~A~~l  163 (164)
                       ...      .+++|+|||||++|+|+|..|
T Consensus       216 ~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l  246 (463)
T 3s5w_A          216 HMAKQPCSSGKPMKIAIIGGGQSAAEAFIDL  246 (463)
T ss_dssp             HHCC-------CEEEEEECCSHHHHHHHHHH
T ss_pred             hHHHhhhcccCCCeEEEECCCHhHHHHHHHH
Confidence             211      468999999999999999876

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.79  E-value=1.6e-09  Score=87.50  Aligned_cols=88  Identities=20%  Similarity=0.297  Sum_probs=63.7

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc-c------ceechhhhccCcC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA-H------LGITSDDLFSLNK  142 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~-~------~v~~~~~~~~~~~  142 (164)
                      .+.+++++.|++++.++++.++.  +++.+ ++  ..+.||+||+|||++|+.|++||. +      .+.+.+++..+.+
T Consensus        64 ~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~  141 (437)
T 3sx6_A           64 PIRHYVERKGIHFIAQSAEQIDAEAQNITLADG--NTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFA  141 (437)
T ss_dssp             ECHHHHHTTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCC--CEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHH
Confidence            45678888999999988888875  46666 44  579999999999999999889886 2      2345555544321


Q ss_pred             ------CCCcEEEECCc----HHH--HHhhcc
Q psy7674         143 ------DPGKVLLVGAS----YIA--LECAGC  162 (164)
Q Consensus       143 ------~~~~vvViGgG----~~g--~E~A~~  162 (164)
                            ..++++|||||    ++|  +|+|..
T Consensus       142 ~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~  173 (437)
T 3sx6_A          142 EYQALLREPGPIVIGAMAGASCFGPAYEYAMI  173 (437)
T ss_dssp             HHHHHHHSCCCEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHH
Confidence                  13456788884    445  888854

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.78  E-value=2.3e-08  Score=76.82  Aligned_cols=88  Identities=18%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--c---EEEeCCeeEEEEeceEEEecCC---CCCCCCCCCccc-----eechhhhc
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--H---RVKFAGEERTVSAQNFIIAVGG---RPTYPDIPGAHL-----GITSDDLF  138 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~---~v~v~~~~~~~~~d~liiAtGs---~~~~p~i~g~~~-----v~~~~~~~  138 (164)
                      .+.+.+++.+++++.+ ++..++.  +   .+.+++  ..+.||++|+|||+   +|+.|++||.+.     +..  ...
T Consensus        72 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~--g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~--~~~  147 (332)
T 3lzw_A           72 NLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNE--ETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY--FVD  147 (332)
T ss_dssp             HHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESS--EEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES--SCS
T ss_pred             HHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECC--CEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE--ecC
Confidence            4556677789999864 6666642  2   344443  24999999999999   888888988621     222  222


Q ss_pred             cCcC-CCCcEEEECCcHHHHHhhcccC
Q psy7674         139 SLNK-DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       139 ~~~~-~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .... .+++++|||+|++|+|+|..|+
T Consensus       148 ~~~~~~~~~v~vvG~g~~~~e~a~~l~  174 (332)
T 3lzw_A          148 DLQKFAGRRVAILGGGDSAVDWALMLE  174 (332)
T ss_dssp             CGGGGBTCEEEEECSSHHHHHHHHHHT
T ss_pred             CHHHcCCCEEEEECCCHhHHHHHHHHH
Confidence            2222 3689999999999999998763

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=98.77  E-value=2.4e-09  Score=71.76  Aligned_cols=70  Identities=10%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             ccccCCCCC-ccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhc
Q psy7674           3 DIQTAPPDY-NFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKN   81 (164)
Q Consensus         3 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~   81 (164)
                      +-||++.++ +|..++++.+   .++|++|.+.+|++|||+|||+|+|||+.+.++         .-..+..+..+|++.
T Consensus        42 k~lL~~~gv~~~~~~~v~~~---~~~r~~l~~~sg~~TvPqIFI~g~~IGG~Ddl~---------~l~~~GeL~~lL~~~  109 (118)
T 2wul_A           42 VQILRLHGVRDYAAYNVLDD---PELRQGIKDYSNWPTIPQVYLNGEFVGGCDILL---------QMHQNGDLVEELKKL  109 (118)
T ss_dssp             HHHHHHTTCCSCEEEETTSC---HHHHHHHHHHHTCCSSCEEEETTEEEECHHHHH---------HHHHHTHHHHHHHHT
T ss_pred             HHHHHHhCCcCeEeecccCC---HHHHHHHHHhccCCCCCeEeECCEEECCHHHHH---------HHHHCCCHHHHHHHc
Confidence            446777887 5898888776   789999999999999999999999999655331         001233466777877


Q ss_pred             Cce
Q psy7674          82 KID   84 (164)
Q Consensus        82 gv~   84 (164)
                      |+.
T Consensus       110 Gi~  112 (118)
T 2wul_A          110 GIH  112 (118)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            765

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.73  E-value=4.7e-08  Score=75.48  Aligned_cols=88  Identities=22%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--cE--EEe-CCeeEEEEeceEEEecCC---CCCCCCCCCccc-----eechhhhc
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--HR--VKF-AGEERTVSAQNFIIAVGG---RPTYPDIPGAHL-----GITSDDLF  138 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~~--v~v-~~~~~~~~~d~liiAtGs---~~~~p~i~g~~~-----v~~~~~~~  138 (164)
                      .+.+.+++.+++++.+ ++..++.  ..  +.. ++  ..+.||++|+|||+   .|..|+++|.+.     +..+  +.
T Consensus        70 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~--~~  145 (335)
T 2zbw_A           70 GLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQG--NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA--VK  145 (335)
T ss_dssp             HHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESS--CS
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCC--CEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEe--cC
Confidence            3455667778988765 5666542  23  333 33  57999999999999   577778887521     2111  11


Q ss_pred             cCc-CCCCcEEEECCcHHHHHhhcccC
Q psy7674         139 SLN-KDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       139 ~~~-~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ... ..+++++|||||++|+|+|..|+
T Consensus       146 ~~~~~~~~~v~viG~G~~g~e~a~~l~  172 (335)
T 2zbw_A          146 SKAEFQGKRVLIVGGGDSAVDWALNLL  172 (335)
T ss_dssp             CGGGGTTCEEEEECSSHHHHHHHHHTT
T ss_pred             chhhcCCCEEEEECCCHHHHHHHHHHH
Confidence            111 14689999999999999998774

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.67  E-value=4.4e-09  Score=85.70  Aligned_cols=107  Identities=16%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             CCceEEEeccCCc-----cccc----cc--chhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCC-
Q psy7674          52 NNSVVIFSKSWCP-----FCTK----AK--ENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-  119 (164)
Q Consensus        52 ~d~vvv~~~~~cp-----~~~~----~~--~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~-  119 (164)
                      +..+++|.+...+     |..+    .+  .....+++++.|++++.++.+.   +.++++.  ..+.||++++|||+. 
T Consensus       145 G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---~~v~~~~--~~~~~d~vvlAtG~~~  219 (456)
T 2vdc_G          145 GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG---RDASLPE--LRRKHVAVLVATGVYK  219 (456)
T ss_dssp             TCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT---TTBCHHH--HHSSCSEEEECCCCCE
T ss_pred             CCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec---cEEEhhH--hHhhCCEEEEecCCCC
Confidence            5578888875321     1111    11  1234467788899998765321   1233322  235799999999996 


Q ss_pred             CCCCCCCCc--cceechhhhc--------c----------CcCCCCcEEEECCcHHHHHhhccc
Q psy7674         120 PTYPDIPGA--HLGITSDDLF--------S----------LNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       120 ~~~p~i~g~--~~v~~~~~~~--------~----------~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |+.|++||.  +.+++..+.+        .          ....+++|+|||||++|+|+|..+
T Consensus       220 ~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~  283 (456)
T 2vdc_G          220 ARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTA  283 (456)
T ss_dssp             ECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHH
T ss_pred             CCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHH
Confidence            677889986  4565432221        1          113468999999999999999754

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=98.64  E-value=1e-08  Score=69.65  Aligned_cols=52  Identities=29%  Similarity=0.378  Sum_probs=44.7

Q ss_pred             ccccCC---CCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           3 DIQTAP---PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         3 ~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      +.+|++   .++.|++++||.++++.++|++|.+.+|++|||++||+|++||+.+
T Consensus        31 k~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~G~~IGG~d   85 (127)
T 3l4n_A           31 KELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNE   85 (127)
T ss_dssp             HHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEECCCHH
T ss_pred             HHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEECCEEEcCHH
Confidence            344554   3688999999999999999999999999999999999999998544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.63  E-value=1.3e-07  Score=74.00  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=59.0

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--c---EEEe-CCeeEEEEeceEEEecCC---CCCCCCCCC-c-c----ceech-h
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--H---RVKF-AGEERTVSAQNFIIAVGG---RPTYPDIPG-A-H----LGITS-D  135 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~---~v~v-~~~~~~~~~d~liiAtGs---~~~~p~i~g-~-~----~v~~~-~  135 (164)
                      .+.+.+++.+++++.+ ++..++.  +   .+.+ ++  ..+.||++|+|||+   .|..|+++| . .    .+..+ .
T Consensus        79 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~  156 (360)
T 3ab1_A           79 SLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTG--NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVK  156 (360)
T ss_dssp             HHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTS--CEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCS
T ss_pred             HHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCC--cEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecC
Confidence            3455667778998776 5666642  2   3444 34  57999999999999   566677887 4 2    12221 1


Q ss_pred             hhccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         136 DLFSLNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       136 ~~~~~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      +...  ..+++++|||+|++|+|+|..|+
T Consensus       157 ~~~~--~~~~~vvVvG~G~~g~e~A~~l~  183 (360)
T 3ab1_A          157 SVED--FKGKRVVIVGGGDSALDWTVGLI  183 (360)
T ss_dssp             CGGG--GTTCEEEEECSSHHHHHHHHHTT
T ss_pred             CHHH--cCCCcEEEECCCHHHHHHHHHHH
Confidence            1111  14689999999999999998763

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.62  E-value=2e-08  Score=66.69  Aligned_cols=53  Identities=38%  Similarity=0.531  Sum_probs=47.6

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++.+|++.+++|++++||..+++.+++++|.+.+|.+++|++||+|+++|+.+
T Consensus        33 ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d   85 (114)
T 3h8q_A           33 VKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCD   85 (114)
T ss_dssp             HHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHH
T ss_pred             HHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECCEEEeCHH
Confidence            45678889999999999999889999999999999999999999999988544

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.62  E-value=3.1e-08  Score=87.32  Aligned_cols=88  Identities=8%  Similarity=-0.003  Sum_probs=60.2

Q ss_pred             HHHhhc-CceEEee-EEEEeeCc-EE----------EeC-------CeeEEEEeceEEEecCCCCCCCCCCCc--cceec
Q psy7674          76 KELEKN-KIDYFNA-KAVFVDKH-RV----------KFA-------GEERTVSAQNFIIAVGGRPTYPDIPGA--HLGIT  133 (164)
Q Consensus        76 ~~l~~~-gv~~~~~-~~~~~~~~-~v----------~v~-------~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~  133 (164)
                      +.+.+. +++++.+ ++..++.. .+          .+.       +....+.||+||+|||++|+.|++||.  +.+++
T Consensus       189 ~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~  268 (965)
T 2gag_A          189 SELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIML  268 (965)
T ss_dssp             HHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEE
T ss_pred             HHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEE
Confidence            445554 8999877 44445421 11          110       222468999999999999999999986  56776


Q ss_pred             hhhh---cc-CcC-CCCcEEEECCcHHHHHhhccc
Q psy7674         134 SDDL---FS-LNK-DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       134 ~~~~---~~-~~~-~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +.++   +. ... ..++++|||||++|+|+|..|
T Consensus       269 ~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L  303 (965)
T 2gag_A          269 AGAVRSYLNRYGVRAGARIAVATTNDSAYELVREL  303 (965)
T ss_dssp             HHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHH
T ss_pred             hHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHH
Confidence            6443   22 122 248999999999999999876

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.57  E-value=8.6e-09  Score=91.36  Aligned_cols=86  Identities=21%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             HHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCC-CCc---cceechhhhcc----------
Q psy7674          75 EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDI-PGA---HLGITSDDLFS----------  139 (164)
Q Consensus        75 ~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i-~g~---~~v~~~~~~~~----------  139 (164)
                      .+++++.||+++.++.+.  .+.+++++ ...+.||++++|||+ +|+.+++ +|.   +++++..+.+.          
T Consensus       245 ~~~~~~~gv~~~~~~~v~--~~~v~~~~-~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~  321 (1025)
T 1gte_A          245 IELMKDLGVKIICGKSLS--ENEITLNT-LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGM  321 (1025)
T ss_dssp             HHHHHTTTCEEEESCCBS--TTSBCHHH-HHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTT
T ss_pred             HHHHHHCCcEEEcccEec--cceEEhhh-cCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhccccc
Confidence            356788899998875432  12344422 134789999999999 5887764 443   45776555432          


Q ss_pred             ------CcCCCCcEEEECCcHHHHHhhccc
Q psy7674         140 ------LNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       140 ------~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                            +...+++|+|||||++|+|+|..+
T Consensus       322 ~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~  351 (1025)
T 1gte_A          322 CACHSPLPSIRGAVIVLGAGDTAFDCATSA  351 (1025)
T ss_dssp             BSCCCCCCCCCSEEEEECSSHHHHHHHHHH
T ss_pred             ccccccccccCCcEEEECCChHHHHHHHHH
Confidence                  123457999999999999999765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.54  E-value=5.3e-08  Score=77.68  Aligned_cols=82  Identities=12%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             hhhHHHHhhcCceEEeeEEEEeeC--cEEEe-CC--eeEEEEeceEEEecCCCCCCCCCCCc-c---ceechhhhccCcC
Q psy7674          72 NNYEKELEKNKIDYFNAKAVFVDK--HRVKF-AG--EERTVSAQNFIIAVGGRPTYPDIPGA-H---LGITSDDLFSLNK  142 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~~~~~~~~--~~v~v-~~--~~~~~~~d~liiAtGs~~~~p~i~g~-~---~v~~~~~~~~~~~  142 (164)
                      ..+.+.+++.+++++.++++.++.  +.+.+ ++  ....+.||+||+|||++|+.|++||. +   .+.+.++...+.+
T Consensus        60 ~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~  139 (409)
T 3h8l_A           60 VDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLRE  139 (409)
T ss_dssp             EEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHH
T ss_pred             HHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHH
Confidence            346677888999999998888864  46666 33  12358999999999999999889986 3   2334444433322


Q ss_pred             ----CCCcEEEECCc
Q psy7674         143 ----DPGKVLLVGAS  153 (164)
Q Consensus       143 ----~~~~vvViGgG  153 (164)
                          ..++++|||+|
T Consensus       140 ~l~~~~~~~vViG~G  154 (409)
T 3h8l_A          140 KLESFQGGNIAIGSG  154 (409)
T ss_dssp             HHHHCCSEEEEEEEC
T ss_pred             HHHHhcCCeEEEEec
Confidence                23567799999

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.46  E-value=5.8e-07  Score=74.47  Aligned_cols=59  Identities=19%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             EEEEeceEEEecC--CCCCCCCCCCcc---c--eechhhhcc-CcCCCCcEEEECCcHHHHHhhccc
Q psy7674         105 RTVSAQNFIIAVG--GRPTYPDIPGAH---L--GITSDDLFS-LNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       105 ~~~~~d~liiAtG--s~~~~p~i~g~~---~--v~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +.+.+|+||+|||  ++|+.|.+||.+   .  +.+..-... ....+++|+|||+|++|+|+|..|
T Consensus       139 ~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l  205 (542)
T 1w4x_A          139 DRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQI  205 (542)
T ss_dssp             CEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHH
T ss_pred             CEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHH
Confidence            5799999999999  678888899862   1  333322111 233579999999999999998765

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=98.44  E-value=1.1e-07  Score=63.00  Aligned_cols=50  Identities=12%  Similarity=0.193  Sum_probs=43.5

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++.+|++.+++|+.++|+.+   ++.++.|.+.+|++++|++||+|++||+.+
T Consensus        37 ak~~L~~~gi~y~~~di~~d---~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d   86 (111)
T 3zyw_A           37 MVEILHKHNIQFSSFDIFSD---EEVRQGLKAYSSWPTYPQLYVSGELIGGLD   86 (111)
T ss_dssp             HHHHHHHTTCCCEEEEGGGC---HHHHHHHHHHHTCCSSCEEEETTEEEECHH
T ss_pred             HHHHHHHcCCCeEEEECcCC---HHHHHHHHHHHCCCCCCEEEECCEEEecHH
Confidence            34578889999999999886   788999999999999999999999998544

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=98.44  E-value=1.1e-07  Score=62.65  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=43.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++.+|++.+++|+.++|+.+   .+.++.|.+++|++++|++||+|++||+.+
T Consensus        39 ak~~L~~~gi~~~~~dI~~~---~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d   88 (109)
T 3ipz_A           39 VVQILKNLNVPFEDVNILEN---EMLRQGLKEYSNWPTFPQLYIGGEFFGGCD   88 (109)
T ss_dssp             HHHHHHHTTCCCEEEEGGGC---HHHHHHHHHHHTCSSSCEEEETTEEEECHH
T ss_pred             HHHHHHHcCCCcEEEECCCC---HHHHHHHHHHHCCCCCCeEEECCEEEeCHH
Confidence            35578889999999999876   788999999999999999999999998544

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=98.42  E-value=1e-07  Score=64.03  Aligned_cols=47  Identities=15%  Similarity=0.097  Sum_probs=40.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhc--------CCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERT--------GQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------g~~~vp~v~i~~~~ig   51 (164)
                      ++.||+++++.|+.++|+.+   ++.++.|.+.+        |++++|+|||+++++|
T Consensus        22 aK~lL~~kgV~feEidI~~d---~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iG   76 (121)
T 1u6t_A           22 VLGFLEANKIGFEEKDIAAN---EENRKWMRENVPENSRPATGYPLPPQIFNESQYRG   76 (121)
T ss_dssp             HHHHHHHTTCCEEEEECTTC---HHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEE
T ss_pred             HHHHHHHCCCceEEEECCCC---HHHHHHHHHhccccccccCCCcCCCEEEECCEEEe
Confidence            56789999999999999876   66667777677        9999999999999998

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.41  E-value=2.3e-07  Score=63.00  Aligned_cols=51  Identities=47%  Similarity=0.684  Sum_probs=46.2

Q ss_pred             ccccCCCC---CccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674           3 DIQTAPPD---YNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         3 ~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      +.+|++.+   ++|++++||..+++.+.++.|.+.+|.+++|++|++|+++|+-
T Consensus        55 k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi~g~~igG~  108 (129)
T 3ctg_A           55 STLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGN  108 (129)
T ss_dssp             HHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESH
T ss_pred             HHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEECCEEEcCH
Confidence            67888899   9999999999988889999999999999999999999988743

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.38  E-value=9.8e-09  Score=85.96  Aligned_cols=95  Identities=20%  Similarity=0.313  Sum_probs=61.0

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeE-EEEeceEEEecCCCCCCCCC--CCc
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEER-TVSAQNFIIAVGGRPTYPDI--PGA  128 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~-~~~~d~liiAtGs~~~~p~i--~g~  128 (164)
                      ...+++|+++|||||...+     ++|++.++++          +.+.++.... ....+.+..-+|. +.+|.+  .| 
T Consensus        17 ~~~v~vy~~~~Cp~C~~~k-----~~L~~~~i~~----------~~~dv~~~~~~~~~~~~l~~~~g~-~tvP~v~i~g-   79 (598)
T 2x8g_A           17 SAAVILFSKTTCPYCKKVK-----DVLAEAKIKH----------ATIELDQLSNGSAIQKCLASFSKI-ETVPQMFVRG-   79 (598)
T ss_dssp             HCSEEEEECTTCHHHHHHH-----HHHHHTTCCC----------EEEEGGGSTTHHHHHHHTHHHHSC-CCSCEEEETT-
T ss_pred             cCCEEEEECCCChhHHHHH-----HHHHHCCCCc----------EEEEcccCcchHHHHHHHHHHhCC-ceeCEEEECC-
Confidence            3578999999999999999     8899999987          2344421000 0011222222553 356663  44 


Q ss_pred             cceechhhhccCc------------CCCCcEEEECCcHHHHHhhccc
Q psy7674         129 HLGITSDDLFSLN------------KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       129 ~~v~~~~~~~~~~------------~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +++..++++..+.            ....+|+|||||+.|+.+|..|
T Consensus        80 ~~igG~~~l~~~~~~g~L~~~l~~~~~~~dvvVIG~GpAGl~aA~~l  126 (598)
T 2x8g_A           80 KFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEA  126 (598)
T ss_dssp             EEEECHHHHHHHHHTTCHHHHHHCCSSSEEEEEECCSHHHHHHHHHH
T ss_pred             EEEEeeehhhhhhhcCcchhhcccccccccEEEECCCccHHHHHHHH
Confidence            6777776543221            1235799999999999999765

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.37  E-value=4.5e-07  Score=74.35  Aligned_cols=79  Identities=11%  Similarity=0.012  Sum_probs=54.9

Q ss_pred             hcCceEEee-EEEEee--CcEEEe----CCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhccC-----cCCCC
Q psy7674          80 KNKIDYFNA-KAVFVD--KHRVKF----AGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLFSL-----NKDPG  145 (164)
Q Consensus        80 ~~gv~~~~~-~~~~~~--~~~v~v----~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~~~-----~~~~~  145 (164)
                      +.+++++.+ ++..++  .+.+.+    ++....+.||++++|||++|+.|++||.  ..+++.+++..+     ...++
T Consensus       172 ~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  251 (493)
T 1y56_A          172 NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMNVWEVAPGR  251 (493)
T ss_dssp             CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCS
T ss_pred             hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCCCCEEEcHHHHHHHHhcccCCCC
Confidence            458888765 344443  222222    2322368999999999999999999986  567776665432     12348


Q ss_pred             cEEEECCcHHHHH
Q psy7674         146 KVLLVGASYIALE  158 (164)
Q Consensus       146 ~vvViGgG~~g~E  158 (164)
                      +++|||+|++|+|
T Consensus       252 ~vvViGgG~~gle  264 (493)
T 1y56_A          252 KVAVTGSKADEVI  264 (493)
T ss_dssp             EEEEESTTHHHHH
T ss_pred             EEEEECCCHHHHH
Confidence            9999999999997

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.7e-07  Score=62.96  Aligned_cols=72  Identities=13%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             cccccCCCCCc---cEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHH
Q psy7674           2 VDIQTAPPDYN---FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKEL   78 (164)
Q Consensus         2 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l   78 (164)
                      ++-+|++.++.   |..++|+.+   .++++.|.+.+|++++|++||+|++||+.+.+.         ....+..+..+|
T Consensus        37 ak~lL~~~gv~~~~~~~~dv~~~---~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~l~---------~l~~~G~L~~~L  104 (121)
T 3gx8_A           37 TIGLLGNQGVDPAKFAAYNVLED---PELREGIKEFSEWPTIPQLYVNKEFIGGCDVIT---------SMARSGELADLL  104 (121)
T ss_dssp             HHHHHHHHTBCGGGEEEEECTTC---HHHHHHHHHHHTCCSSCEEEETTEEEESHHHHH---------HHHHHTHHHHHH
T ss_pred             HHHHHHHcCCCcceEEEEEecCC---HHHHHHHHHHhCCCCCCeEEECCEEEecHHHHH---------HHHHcCChHHHH
Confidence            34567778888   677777654   889999999999999999999999999554321         001233456677


Q ss_pred             hhcCceE
Q psy7674          79 EKNKIDY   85 (164)
Q Consensus        79 ~~~gv~~   85 (164)
                      ++.|+-.
T Consensus       105 ~~~g~~~  111 (121)
T 3gx8_A          105 EEAQALV  111 (121)
T ss_dssp             HHTTCBC
T ss_pred             HHcCCCC
Confidence            7777643

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.31  E-value=5.7e-07  Score=60.00  Aligned_cols=50  Identities=42%  Similarity=0.692  Sum_probs=45.4

Q ss_pred             ccccCCCC---CccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           3 DIQTAPPD---YNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         3 ~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      +.+|++.+   ++|..++||..+++.+.++.|.+.+|.+++|++|++|+++++
T Consensus        43 k~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG   95 (118)
T 3c1r_A           43 NTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGG   95 (118)
T ss_dssp             HHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEES
T ss_pred             HHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEEECCEEEEc
Confidence            67888888   999999999998888999999999999999999999997774

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.31  E-value=2.1e-07  Score=79.78  Aligned_cols=59  Identities=27%  Similarity=0.313  Sum_probs=46.9

Q ss_pred             EEEEeceEEEecCCC--------CCCCCCCCcc----ceechhhhccCcC-CCCcEEEEC--CcHHHHHhhccc
Q psy7674         105 RTVSAQNFIIAVGGR--------PTYPDIPGAH----LGITSDDLFSLNK-DPGKVLLVG--ASYIALECAGCD  163 (164)
Q Consensus       105 ~~~~~d~liiAtGs~--------~~~p~i~g~~----~v~~~~~~~~~~~-~~~~vvViG--gG~~g~E~A~~l  163 (164)
                      ..+.||+||+|||++        |+.|++||.+    ++++..+++.... ..++|+|||  ||++|+|+|..|
T Consensus       476 ~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l  549 (729)
T 1o94_A          476 LQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKL  549 (729)
T ss_dssp             HTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHH
T ss_pred             cccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHH
Confidence            357899999999998        4567788853    6788777765433 357999998  999999999876

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=98.30  E-value=4.9e-07  Score=61.89  Aligned_cols=50  Identities=16%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++.+|++.+++|..++|+.+   ++.++.|.+++|.+++|++||+|++||+-+
T Consensus        56 ak~~L~~~gv~y~~vdI~~d---~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d  105 (135)
T 2wci_A           56 AVQALAACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVDGELVGGCD  105 (135)
T ss_dssp             HHHHHHTTCSCCEEEEGGGC---HHHHHHHHHHHTCCSSCEEEETTEEEESHH
T ss_pred             HHHHHHHcCCceEEEECCCC---HHHHHHHHHHHCCCCcCEEEECCEEEEChH
Confidence            45678899999999999987   778899999999999999999999888543

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.29  E-value=3.4e-07  Score=60.39  Aligned_cols=53  Identities=45%  Similarity=0.619  Sum_probs=45.6

Q ss_pred             cccccCCCCCccEEEEecCC-CChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKL-PNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++.+|++.++.|.+++|+.. ++..++++.+.+.+|.+++|++|++|++||+-+
T Consensus        35 ~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~   88 (113)
T 3rhb_A           35 VKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCT   88 (113)
T ss_dssp             HHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHH
T ss_pred             HHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcH
Confidence            45678899999999999986 456888999999999999999999999888443

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=98.29  E-value=3.2e-07  Score=57.73  Aligned_cols=51  Identities=18%  Similarity=0.330  Sum_probs=42.6

Q ss_pred             cccccCCCCCccEEEEecCCC--ChhHHHHHHHhhcCCC-----CcceEEe-eceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLP--NGAQIQTALFERTGQK-----TVPNIFI-HGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~g~~-----~vp~v~i-~~~~ig~   52 (164)
                      ++.+|++.+++|++++|+..+  +.++.++.|.+++|.+     ++|++|+ +|+++|+
T Consensus        20 ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG   78 (87)
T 1aba_A           20 AKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGG   78 (87)
T ss_dssp             HHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEES
T ss_pred             HHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeC
Confidence            356788899999999998543  3478888898889999     9999999 9998874

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=98.28  E-value=4.4e-07  Score=57.86  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcC--CCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTG--QKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g--~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.++.|+.++|+.+   .+.++.|.+++|  .+++|++||+|+++|+
T Consensus        24 ak~~L~~~~i~~~~~di~~~---~~~~~~l~~~~g~~~~~vP~ifi~g~~igG   73 (93)
T 1t1v_A           24 VTRILDGKRIQYQLVDISQD---NALRDEMRTLAGNPKATPPQIVNGNHYCGD   73 (93)
T ss_dssp             HHHHHHHTTCCCEEEETTSC---HHHHHHHHHHTTCTTCCSCEEEETTEEEEE
T ss_pred             HHHHHHHCCCceEEEECCCC---HHHHHHHHHHhCCCCCCCCEEEECCEEEeC
Confidence            34578889999999999877   678888888889  7899999999998873

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.28  E-value=1.5e-07  Score=80.24  Aligned_cols=82  Identities=20%  Similarity=0.161  Sum_probs=58.9

Q ss_pred             hHHHHhhc-CceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCC--------CCCCCCCc--cceechhhhccCcC
Q psy7674          74 YEKELEKN-KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP--------TYPDIPGA--HLGITSDDLFSLNK  142 (164)
Q Consensus        74 ~~~~l~~~-gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~--------~~p~i~g~--~~v~~~~~~~~~~~  142 (164)
                      +...+++. +++++.++       .++.+. ...+.||++++|||++|        ..|++||.  ..+++..+.+....
T Consensus       449 ~~~~~~~~~gv~~~~~~-------~v~~~~-~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~  520 (690)
T 3k30_A          449 REAVLAELPNVEIYRES-------PMTGDD-IVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRL  520 (690)
T ss_dssp             HHHHHHTCTTEEEESSC-------CCCHHH-HHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCC
T ss_pred             HHHHHHHcCCCEEEECC-------eecHHH-HhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCCC
Confidence            44556666 88887652       232211 14578999999999994        46778886  46788777765533


Q ss_pred             -CCCcEEEEC--CcHHHHHhhccc
Q psy7674         143 -DPGKVLLVG--ASYIALECAGCD  163 (164)
Q Consensus       143 -~~~~vvViG--gG~~g~E~A~~l  163 (164)
                       ..++|+|||  ||++|+|+|..|
T Consensus       521 ~~g~~VvViG~ggG~~g~e~A~~L  544 (690)
T 3k30_A          521 PDGKKVVVYDDDHYYLGGVVAELL  544 (690)
T ss_dssp             CSSSEEEEEECSCSSHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCccHHHHHHHH
Confidence             347899999  999999999876

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.25  E-value=4.3e-06  Score=68.69  Aligned_cols=62  Identities=21%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             CeeEEEEeceEEEecCCCCCCCCCCCc-cceechhhh-------ccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         102 GEERTVSAQNFIIAVGGRPTYPDIPGA-HLGITSDDL-------FSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       102 ~~~~~~~~d~liiAtGs~~~~p~i~g~-~~v~~~~~~-------~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +....+.++.||+|||..|.+|..++. ..++.+.+.       ......+|+|+|||+|.+|+|++..|
T Consensus       196 g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L  265 (501)
T 4b63_A          196 GEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDL  265 (501)
T ss_dssp             CCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHH
T ss_pred             ceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHH
Confidence            334578999999999999988875443 334433222       12223578999999999999998655

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.20  E-value=5.5e-08  Score=62.35  Aligned_cols=28  Identities=36%  Similarity=0.966  Sum_probs=26.1

Q ss_pred             CceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ..++||+++|||||.++|     ++|++.||+|
T Consensus         4 a~I~vYs~~~Cp~C~~aK-----~~L~~~gi~y   31 (92)
T 2lqo_A            4 AALTIYTTSWCGYCLRLK-----TALTANRIAY   31 (92)
T ss_dssp             SCEEEEECTTCSSHHHHH-----HHHHHTTCCC
T ss_pred             CcEEEEcCCCCHhHHHHH-----HHHHhcCCce
Confidence            468999999999999999     8999999998

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.19  E-value=5.3e-07  Score=71.54  Aligned_cols=51  Identities=24%  Similarity=0.289  Sum_probs=42.4

Q ss_pred             HHHhhcCceEEeeEEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc
Q psy7674          76 KELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA  128 (164)
Q Consensus        76 ~~l~~~gv~~~~~~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~  128 (164)
                      +.+.+.|++++.++++.+|+  +++.+ ++  .++.||+|++|||++++.|++||.
T Consensus        63 ~~~~~~gv~~i~~~v~~id~~~~~v~~~~g--~~i~yd~LviAtG~~~~~~~i~G~  116 (401)
T 3vrd_B           63 DGLRAHGIQVVHDSALGIDPDKKLVKTAGG--AEFAYDRCVVAPGIDLLYDKIEGY  116 (401)
T ss_dssp             HHHHHTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECGGGSBTC
T ss_pred             HHHHHCCCEEEEeEEEEEEccCcEEEeccc--ceeecceeeeccCCccccCCccCc
Confidence            34567899999999999985  45655 55  689999999999999999999886

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.17  E-value=6.9e-07  Score=58.67  Aligned_cols=49  Identities=8%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d   53 (164)
                      ++.+|++.++.|..++|+.+   .+.++.|.+++|.+++|++|++|+++|+-
T Consensus        36 ak~~L~~~~i~~~~vdi~~~---~~~~~~l~~~~g~~~vP~ifi~g~~igG~   84 (109)
T 1wik_A           36 ILEILNSTGVEYETFDILED---EEVRQGLKTFSNWPTYPQLYVRGDLVGGL   84 (109)
T ss_dssp             HHHHHHHTCSCEEEEESSSC---HHHHHHHHHHHSCCSSCEEECSSSEEECH
T ss_pred             HHHHHHHcCCCeEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEEcCH
Confidence            45678888999999999886   78888888889999999999999988843

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.17  E-value=6.7e-07  Score=57.86  Aligned_cols=49  Identities=24%  Similarity=0.374  Sum_probs=41.9

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhc-CCCCcceEEeeceEecCC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERT-GQKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-g~~~vp~v~i~~~~ig~d   53 (164)
                      ++.+|++.++.|..++|+..   .+.++.+.+++ |.+++|++|++|+++|+-
T Consensus        32 ak~~L~~~~i~y~~idI~~~---~~~~~~l~~~~~g~~~vP~ifi~g~~igG~   81 (99)
T 3qmx_A           32 ALALLKRKGVEFQEYCIDGD---NEAREAMAARANGKRSLPQIFIDDQHIGGC   81 (99)
T ss_dssp             HHHHHHHHTCCCEEEECTTC---HHHHHHHHHHTTTCCCSCEEEETTEEEESH
T ss_pred             HHHHHHHCCCCCEEEEcCCC---HHHHHHHHHHhCCCCCCCEEEECCEEEeCh
Confidence            45678889999999999987   67788888888 999999999999988743

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=1.1e-06  Score=58.08  Aligned_cols=48  Identities=15%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhc--------CCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERT--------GQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++|++++|+.+   .+.++.|.+..        |.+++|++||++++||+
T Consensus        30 ak~~L~~~gi~y~~vdI~~~---~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG   85 (111)
T 2ct6_A           30 VVRFLEANKIEFEEVDITMS---EEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGD   85 (111)
T ss_dssp             HHHHHHHTTCCEEEEETTTC---HHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEE
T ss_pred             HHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeC
Confidence            45678889999999999876   67777777774        99999999999998883

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.13  E-value=1.1e-06  Score=56.19  Aligned_cols=44  Identities=14%  Similarity=0.259  Sum_probs=34.3

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhc-CCCCcceEEee-ce
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERT-GQKTVPNIFIH-GK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-g~~~vp~v~i~-~~   48 (164)
                      ++.+|++.++.|+.++|+.+   ++.++.+.+++ |+++||+|||+ |+
T Consensus        20 aK~~L~~~gi~y~~idi~~d---~~~~~~~~~~~~G~~tVP~I~i~Dg~   65 (92)
T 2lqo_A           20 LKTALTANRIAYDEVDIEHN---RAAAEFVGSVNGGNRTVPTVKFADGS   65 (92)
T ss_dssp             HHHHHHHTTCCCEEEETTTC---HHHHHHHHHHSSSSSCSCEEEETTSC
T ss_pred             HHHHHHhcCCceEEEEcCCC---HHHHHHHHHHcCCCCEeCEEEEeCCE
Confidence            46789999999999999877   44455555554 89999999995 55

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.05  E-value=3.5e-06  Score=55.59  Aligned_cols=50  Identities=20%  Similarity=0.338  Sum_probs=44.6

Q ss_pred             cccccCCCCCc---cEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYN---FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++.+|++.++.   |..++|+..+++.+.++.|.+..|.+++|++|++|++++
T Consensus        35 ~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~ig   87 (114)
T 2hze_A           35 ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTSIG   87 (114)
T ss_dssp             HHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEETTEEEE
T ss_pred             HHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEEe
Confidence            45678888999   999999999888899999998899999999999998776

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.03  E-value=1.6e-06  Score=56.37  Aligned_cols=48  Identities=8%  Similarity=0.238  Sum_probs=41.6

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++|..++|+.+   ++.++.+.+.+|.+++|++|++|+++|+
T Consensus        38 ~~~~L~~~~i~~~~vdi~~~---~~~~~~l~~~~g~~~vP~v~i~g~~igg   85 (105)
T 2yan_A           38 ILEILNSTGVEYETFDILED---EEVRQGLKAYSNWPTYPQLYVKGELVGG   85 (105)
T ss_dssp             HHHHHHHHTCCCEEEEGGGC---HHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred             HHHHHHHCCCCeEEEECCCC---HHHHHHHHHHHCCCCCCeEEECCEEEeC
Confidence            45677888999999999987   6788888888999999999999998884

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.97  E-value=3.5e-06  Score=54.42  Aligned_cols=51  Identities=24%  Similarity=0.392  Sum_probs=43.7

Q ss_pred             cccccCCCCCc---cEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYN---FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++++|++.+++   |.+++|+.++++.+.++.|.+..|.+++|++|++|+++++
T Consensus        28 ~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g~~i~g   81 (105)
T 1kte_A           28 TQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGG   81 (105)
T ss_dssp             HHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEES
T ss_pred             HHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECCEEEec
Confidence            35667777888   9999999988888888999888999999999999997764

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=97.97  E-value=1.3e-07  Score=62.61  Aligned_cols=74  Identities=22%  Similarity=0.342  Sum_probs=49.8

Q ss_pred             ecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          50 IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        50 ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +..+.+++|++     +|||||.+++     ++|++.|+++.          .+.++.+ .. ..+.+.--+| .+.+|.
T Consensus        13 i~~~~Vvlf~kg~~~~~~Cp~C~~ak-----~~L~~~gi~y~----------~~di~~d-~~-~~~~l~~~~g-~~tvP~   74 (111)
T 3zyw_A           13 THAAPCMLFMKGTPQEPRCGFSKQMV-----EILHKHNIQFS----------SFDIFSD-EE-VRQGLKAYSS-WPTYPQ   74 (111)
T ss_dssp             HTSSSEEEEESBCSSSBSSHHHHHHH-----HHHHHTTCCCE----------EEEGGGC-HH-HHHHHHHHHT-CCSSCE
T ss_pred             HhcCCEEEEEecCCCCCcchhHHHHH-----HHHHHcCCCeE----------EEECcCC-HH-HHHHHHHHHC-CCCCCE
Confidence            55678999999     9999999999     89999999872          3444221 11 1122222355 445676


Q ss_pred             --CCCccceechhhhccCcC
Q psy7674         125 --IPGAHLGITSDDLFSLNK  142 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~~~  142 (164)
                        +.| +++++++++..+.+
T Consensus        75 ifi~g-~~iGG~d~l~~l~~   93 (111)
T 3zyw_A           75 LYVSG-ELIGGLDIIKELEA   93 (111)
T ss_dssp             EEETT-EEEECHHHHHHHHH
T ss_pred             EEECC-EEEecHHHHHHHHH
Confidence              355 88888888776543

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.92  E-value=2.6e-07  Score=59.82  Aligned_cols=72  Identities=21%  Similarity=0.508  Sum_probs=46.0

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCcc
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAH  129 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~  129 (164)
                      ...++||+++|||||.+++     .+|++.+++|          ..+.++.+..  ..+.+.--++....+|.  +.| +
T Consensus        15 ~~~v~vy~~~~Cp~C~~ak-----~~L~~~~i~y----------~~idI~~~~~--~~~~l~~~~~g~~~vP~ifi~g-~   76 (99)
T 3qmx_A           15 SAKIEIYTWSTCPFCMRAL-----ALLKRKGVEF----------QEYCIDGDNE--AREAMAARANGKRSLPQIFIDD-Q   76 (99)
T ss_dssp             CCCEEEEECTTCHHHHHHH-----HHHHHHTCCC----------EEEECTTCHH--HHHHHHHHTTTCCCSCEEEETT-E
T ss_pred             CCCEEEEEcCCChhHHHHH-----HHHHHCCCCC----------EEEEcCCCHH--HHHHHHHHhCCCCCCCEEEECC-E
Confidence            5689999999999999999     8899999987          3355533111  11222222323445665  344 7


Q ss_pred             ceechhhhccCc
Q psy7674         130 LGITSDDLFSLN  141 (164)
Q Consensus       130 ~v~~~~~~~~~~  141 (164)
                      .+.+++++..+.
T Consensus        77 ~igG~d~l~~~~   88 (99)
T 3qmx_A           77 HIGGCDDIYALD   88 (99)
T ss_dssp             EEESHHHHHHHH
T ss_pred             EEeChHHHHHHH
Confidence            788888776543

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=97.90  E-value=1.3e-05  Score=63.22  Aligned_cols=51  Identities=43%  Similarity=0.665  Sum_probs=43.8

Q ss_pred             cccCCCCCcc---EEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           4 IQTAPPDYNF---QVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         4 ~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      .||++.++.|   .++++|..++..++|++|.+++|+++||+|||+|++||+.+
T Consensus       280 ~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVFI~Gk~IGG~D  333 (362)
T 2jad_A          280 TLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGND  333 (362)
T ss_dssp             HHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEEETTEEEESHH
T ss_pred             HHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEEECCEEEEChH
Confidence            4788888876   56677888888999999999999999999999999998544

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.89  E-value=7.5e-08  Score=65.33  Aligned_cols=75  Identities=23%  Similarity=0.376  Sum_probs=45.8

Q ss_pred             cCCceEEEeccCCcccccccchhhHHHHhhc---CceEEeeEEEEeeCcEEEeCCeeE-EEEeceEEEecCCCCCCCC--
Q psy7674          51 DNNSVVIFSKSWCPFCTKAKENNYEKELEKN---KIDYFNAKAVFVDKHRVKFAGEER-TVSAQNFIIAVGGRPTYPD--  124 (164)
Q Consensus        51 g~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~---gv~~~~~~~~~~~~~~v~v~~~~~-~~~~d~liiAtGs~~~~p~--  124 (164)
                      ....++||+++|||||.+++     ++|++.   ++++          ..+.++.... ....+.+--.|| .+.+|.  
T Consensus        12 ~~~~Vvvysk~~Cp~C~~ak-----~lL~~~~~~~v~~----------~~idid~~~d~~~~~~~l~~~~G-~~tVP~If   75 (127)
T 3l4n_A           12 DLSPIIIFSKSTCSYSKGMK-----ELLENEYQFIPNY----------YIIELDKHGHGEELQEYIKLVTG-RGTVPNLL   75 (127)
T ss_dssp             TSCSEEEEECTTCHHHHHHH-----HHHHHHEEEESCC----------EEEEGGGSTTHHHHHHHHHHHHS-CCSSCEEE
T ss_pred             ccCCEEEEEcCCCccHHHHH-----HHHHHhcccCCCc----------EEEEecCCCCHHHHHHHHHHHcC-CCCcceEE
Confidence            34569999999999999999     788774   4555          3344422100 011122222356 446776  


Q ss_pred             CCCccceechhhhccCcC
Q psy7674         125 IPGAHLGITSDDLFSLNK  142 (164)
Q Consensus       125 i~g~~~v~~~~~~~~~~~  142 (164)
                      |.| +.+++++++..+.+
T Consensus        76 I~G-~~IGG~ddl~~l~~   92 (127)
T 3l4n_A           76 VNG-VSRGGNEEIKKLHT   92 (127)
T ss_dssp             ETT-EECCCHHHHHHHHH
T ss_pred             ECC-EEEcCHHHHHHHHH
Confidence            355 78888888776643

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.81  E-value=7e-06  Score=56.79  Aligned_cols=75  Identities=31%  Similarity=0.422  Sum_probs=53.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKN   81 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~   81 (164)
                      ++++|++.++.|..++||..+++.+.++.|.+..|.+++|++|++|+++++-+.++         .......+.++++..
T Consensus        65 ~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi~G~~igG~d~l~---------~l~~~g~L~~~L~~~  135 (146)
T 2ht9_A           65 AKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTH---------RLHKEGKLLPLVHQC  135 (146)
T ss_dssp             HHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHHHHH---------HHHHTTCHHHHHHHT
T ss_pred             HHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEECCEEEeCchHHH---------HHHHcChHHHHHHHc
Confidence            45677888999999999998778888899998899999999999999776422110         001122355677777


Q ss_pred             CceE
Q psy7674          82 KIDY   85 (164)
Q Consensus        82 gv~~   85 (164)
                      |+..
T Consensus       136 g~~~  139 (146)
T 2ht9_A          136 YLKK  139 (146)
T ss_dssp             TC--
T ss_pred             Ccch
Confidence            7765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=7.1e-06  Score=55.49  Aligned_cols=50  Identities=42%  Similarity=0.656  Sum_probs=43.6

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++.+|++.+++|..++||..+++.+.++.|.+..|.+++|++|++|++++
T Consensus        43 ~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i~G~~ig   92 (130)
T 2cq9_A           43 AKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIG   92 (130)
T ss_dssp             HHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEETTEEEE
T ss_pred             HHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEECCEEEc
Confidence            45677888999999999988777888889988899999999999998776

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.78  E-value=6.1e-06  Score=51.40  Aligned_cols=50  Identities=22%  Similarity=0.393  Sum_probs=39.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCC-----CCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQ-----KTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~-----~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++|+++++|..+++...+ .+.++.|.     +++|++|++|+++++
T Consensus        20 ~~~~L~~~~i~~~~~~vd~~~~~~~~~-el~~~~g~~~~~~~~vP~i~i~g~~i~g   74 (89)
T 3msz_A           20 AKQWFEENNIAFDETIIDDYAQRSKFY-DEMNQSGKVIFPISTVPQIFIDDEHIGG   74 (89)
T ss_dssp             HHHHHHHTTCCCEEEECCSHHHHHHHH-HHHHTTTCCSSCCCSSCEEEETTEEEES
T ss_pred             HHHHHHHcCCCceEEEeecCCChhHHH-HHHHHhCCCCCCCCccCEEEECCEEEeC
Confidence            456788899999999998876544444 46667899     999999999997773

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=97.74  E-value=8.7e-07  Score=59.49  Aligned_cols=73  Identities=19%  Similarity=0.262  Sum_probs=48.8

Q ss_pred             ecCCceEEEecc-----CCcccccccchhhHHHHhhcCce---EEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC
Q psy7674          50 IDNNSVVIFSKS-----WCPFCTKAKENNYEKELEKNKID---YFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        50 ig~d~vvv~~~~-----~cp~~~~~~~~~~~~~l~~~gv~---~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~  121 (164)
                      |..+.++||+++     |||||..++     ++|+++|++   |          ..+.++.+ .. ..+.+.--+| .+.
T Consensus        13 i~~~~Vvvfsk~t~~~p~Cp~C~~ak-----~lL~~~gv~~~~~----------~~~dv~~~-~~-~~~~l~~~sg-~~t   74 (121)
T 3gx8_A           13 IESAPVVLFMKGTPEFPKCGFSRATI-----GLLGNQGVDPAKF----------AAYNVLED-PE-LREGIKEFSE-WPT   74 (121)
T ss_dssp             HHSCSEEEEESBCSSSBCTTHHHHHH-----HHHHHHTBCGGGE----------EEEECTTC-HH-HHHHHHHHHT-CCS
T ss_pred             hccCCEEEEEeccCCCCCCccHHHHH-----HHHHHcCCCcceE----------EEEEecCC-HH-HHHHHHHHhC-CCC
Confidence            556789999996     999999999     899999998   5          22444221 11 1122222355 456


Q ss_pred             CCC--CCCccceechhhhccCc
Q psy7674         122 YPD--IPGAHLGITSDDLFSLN  141 (164)
Q Consensus       122 ~p~--i~g~~~v~~~~~~~~~~  141 (164)
                      +|.  |.| +++++++++..+.
T Consensus        75 vP~vfI~g-~~iGG~d~l~~l~   95 (121)
T 3gx8_A           75 IPQLYVNK-EFIGGCDVITSMA   95 (121)
T ss_dssp             SCEEEETT-EEEESHHHHHHHH
T ss_pred             CCeEEECC-EEEecHHHHHHHH
Confidence            776  355 8889988877654

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=97.73  E-value=7.9e-07  Score=59.45  Aligned_cols=74  Identities=22%  Similarity=0.350  Sum_probs=50.3

Q ss_pred             ecCCceEEEecc-----CCcccccccchhhHHHHhhcCc-eEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674          50 IDNNSVVIFSKS-----WCPFCTKAKENNYEKELEKNKI-DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        50 ig~d~vvv~~~~-----~cp~~~~~~~~~~~~~l~~~gv-~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      |..+.|++|+|+     +||||.+++     ++|++.|+ +|          ..+.++.+ .. ..+.+.--|| .|.+|
T Consensus        17 i~~~~VvvF~Kgt~~~P~C~fc~~ak-----~lL~~~gv~~~----------~~~~v~~~-~~-~r~~l~~~sg-~~TvP   78 (118)
T 2wul_A           17 VKKDKVVVFLKGTPEQPQCGFSNAVV-----QILRLHGVRDY----------AAYNVLDD-PE-LRQGIKDYSN-WPTIP   78 (118)
T ss_dssp             HHHSSEEEEESBCSSSBSSHHHHHHH-----HHHHHTTCCSC----------EEEETTSC-HH-HHHHHHHHHT-CCSSC
T ss_pred             HhcCCEEEEEcCCCCCCCCHHHHHHH-----HHHHHhCCcCe----------EeecccCC-HH-HHHHHHHhcc-CCCCC
Confidence            456789999995     599999999     89999998 45          23444221 11 1233444466 45678


Q ss_pred             C--CCCccceechhhhccCcC
Q psy7674         124 D--IPGAHLGITSDDLFSLNK  142 (164)
Q Consensus       124 ~--i~g~~~v~~~~~~~~~~~  142 (164)
                      .  |.| +++++++++..+.+
T Consensus        79 qIFI~g-~~IGG~Ddl~~l~~   98 (118)
T 2wul_A           79 QVYLNG-EFVGGCDILLQMHQ   98 (118)
T ss_dssp             EEEETT-EEEECHHHHHHHHH
T ss_pred             eEeECC-EEECCHHHHHHHHH
Confidence            7  456 89999999877653

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=97.70  E-value=8.3e-07  Score=58.40  Aligned_cols=73  Identities=21%  Similarity=0.321  Sum_probs=48.9

Q ss_pred             ecCCceEEEecc-----CCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          50 IDNNSVVIFSKS-----WCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        50 ig~d~vvv~~~~-----~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +..+.++||+++     |||||.+++     ++|+++|++|          ..+.++.+ . ...+.+.--+|. +.+|.
T Consensus        15 i~~~~Vvvy~k~t~~~p~Cp~C~~ak-----~~L~~~gi~~----------~~~dI~~~-~-~~~~~l~~~~g~-~tvP~   76 (109)
T 3ipz_A           15 VNSEKVVLFMKGTRDFPMCGFSNTVV-----QILKNLNVPF----------EDVNILEN-E-MLRQGLKEYSNW-PTFPQ   76 (109)
T ss_dssp             HTSSSEEEEESBCSSSBSSHHHHHHH-----HHHHHTTCCC----------EEEEGGGC-H-HHHHHHHHHHTC-SSSCE
T ss_pred             HccCCEEEEEecCCCCCCChhHHHHH-----HHHHHcCCCc----------EEEECCCC-H-HHHHHHHHHHCC-CCCCe
Confidence            456789999996     999999999     8999999998          33444221 1 112223223553 45666


Q ss_pred             --CCCccceechhhhccCc
Q psy7674         125 --IPGAHLGITSDDLFSLN  141 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~~  141 (164)
                        |.| +++++++++..+.
T Consensus        77 ifi~g-~~iGG~d~l~~l~   94 (109)
T 3ipz_A           77 LYIGG-EFFGGCDITLEAF   94 (109)
T ss_dssp             EEETT-EEEECHHHHHHHH
T ss_pred             EEECC-EEEeCHHHHHHHH
Confidence              355 8888988877654

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=97.65  E-value=2.2e-06  Score=53.79  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             eEEEecc----CCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCe---eEEEEeceEEEecCCCC----CCC
Q psy7674          55 VVIFSKS----WCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRP----TYP  123 (164)
Q Consensus        55 vvv~~~~----~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~---~~~~~~d~liiAtGs~~----~~p  123 (164)
                      +++|+++    |||||.+++     .+|+++|+++.          .+.++..   ......+.+.-.+|.+.    .+|
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak-----~~L~~~gi~y~----------~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP   66 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAK-----RLLTVKKQPFE----------FINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMP   66 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHH-----HHHHHTTCCEE----------EEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSC
T ss_pred             EEEEEeCCCCCcCccHHHHH-----HHHHHcCCCEE----------EEEeeccccccCHHHHHHHHHHhCCCCCCCCccC
Confidence            6899999    999999999     89999999973          3444310   01111123444466552    567


Q ss_pred             C--CCCccceechhhhccC
Q psy7674         124 D--IPGAHLGITSDDLFSL  140 (164)
Q Consensus       124 ~--i~g~~~v~~~~~~~~~  140 (164)
                      .  +++.+.+++++++..+
T Consensus        67 ~v~i~~g~~igG~d~l~~~   85 (87)
T 1aba_A           67 QVFAPDGSHIGGFDQLREY   85 (87)
T ss_dssp             EEECTTSCEEESHHHHHHH
T ss_pred             EEEEECCEEEeCHHHHHHh
Confidence            6  4243788888887654

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=97.63  E-value=1.8e-06  Score=54.93  Aligned_cols=71  Identities=14%  Similarity=0.199  Sum_probs=45.7

Q ss_pred             ceEEEeccCCccc------ccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCC--
Q psy7674          54 SVVIFSKSWCPFC------TKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPD--  124 (164)
Q Consensus        54 ~vvv~~~~~cp~~------~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~--  124 (164)
                      .+++|++++||+|      .+++     .+|++.|++|          ..+.++.+ . ...+.+.-.+|. ...+|.  
T Consensus         3 ~v~ly~~~~C~~c~~~~~~~~ak-----~~L~~~~i~~----------~~~di~~~-~-~~~~~l~~~~g~~~~~vP~if   65 (93)
T 1t1v_A            3 GLRVYSTSVTGSREIKSQQSEVT-----RILDGKRIQY----------QLVDISQD-N-ALRDEMRTLAGNPKATPPQIV   65 (93)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHH-----HHHHHTTCCC----------EEEETTSC-H-HHHHHHHHHTTCTTCCSCEEE
T ss_pred             CEEEEEcCCCCCchhhHHHHHHH-----HHHHHCCCce----------EEEECCCC-H-HHHHHHHHHhCCCCCCCCEEE
Confidence            5889999999999      7888     8899999987          33555321 1 111223323563 335666  


Q ss_pred             CCCccceechhhhccCcC
Q psy7674         125 IPGAHLGITSDDLFSLNK  142 (164)
Q Consensus       125 i~g~~~v~~~~~~~~~~~  142 (164)
                      +.| +++++++++..+.+
T Consensus        66 i~g-~~igG~d~l~~l~~   82 (93)
T 1t1v_A           66 NGN-HYCGDYELFVEAVE   82 (93)
T ss_dssp             ETT-EEEEEHHHHHHHHH
T ss_pred             ECC-EEEeCHHHHHHHHh
Confidence            344 78888888776543

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.57  E-value=4e-06  Score=54.93  Aligned_cols=72  Identities=24%  Similarity=0.370  Sum_probs=46.2

Q ss_pred             ecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          50 IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        50 ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +....+++|++     +|||||..++     .+|++.+++|          ..+.++.+  ....+.+.-.+| .+.+|.
T Consensus        12 i~~~~vvvy~~g~~~~~~Cp~C~~ak-----~~L~~~~i~~----------~~vdi~~~--~~~~~~l~~~~g-~~~vP~   73 (109)
T 1wik_A           12 TNKASVMLFMKGNKQEAKCGFSKQIL-----EILNSTGVEY----------ETFDILED--EEVRQGLKTFSN-WPTYPQ   73 (109)
T ss_dssp             HTTSSEEEEESSTTTCCCSSTHHHHH-----HHHHHTCSCE----------EEEESSSC--HHHHHHHHHHHS-CCSSCE
T ss_pred             hccCCEEEEEecCCCCCCCchHHHHH-----HHHHHcCCCe----------EEEECCCC--HHHHHHHHHHhC-CCCCCE
Confidence            34567999999     9999999999     8899999987          33555321  111122222345 345666


Q ss_pred             --CCCccceechhhhccC
Q psy7674         125 --IPGAHLGITSDDLFSL  140 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~  140 (164)
                        +.| +.+.+++++..+
T Consensus        74 ifi~g-~~igG~d~l~~l   90 (109)
T 1wik_A           74 LYVRG-DLVGGLDIVKEL   90 (109)
T ss_dssp             EECSS-SEEECHHHHHHH
T ss_pred             EEECC-EEEcCHHHHHHH
Confidence              344 778877765543

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.55  E-value=2.7e-05  Score=50.32  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             cccccCCCCCccEEEEecCCC--ChhHHHHHHHhhcCCCCcceEEeec-eEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLP--NGAQIQTALFERTGQKTVPNIFIHG-KHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~g~~~vp~v~i~~-~~ig~   52 (164)
                      ++.+|++.++.|+.++|+..+  +..++.+.+.+.+|.+++|++|+++ +++++
T Consensus        38 ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg   91 (103)
T 3nzn_A           38 TKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVG   91 (103)
T ss_dssp             HHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEES
T ss_pred             HHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEc
Confidence            456788899999999999753  3345566666778999999999998 87763

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=5.8e-06  Score=54.47  Aligned_cols=69  Identities=23%  Similarity=0.301  Sum_probs=43.5

Q ss_pred             ceEEEeccCCcccc------cccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEe--------cCCC
Q psy7674          54 SVVIFSKSWCPFCT------KAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIA--------VGGR  119 (164)
Q Consensus        54 ~vvv~~~~~cp~~~------~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiA--------tGs~  119 (164)
                      .++||++++||||.      +++     .+|++++++|          ..+.++.+ .. ..+.+.-.        +| .
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak-----~~L~~~gi~y----------~~vdI~~~-~~-~~~~l~~~~~~~~~~~~g-~   70 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVV-----RFLEANKIEF----------EEVDITMS-EE-QRQWMYKNVPPEKKPTQG-N   70 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHH-----HHHHHTTCCE----------EEEETTTC-HH-HHHHHHHSCCTTTCCSSS-S
T ss_pred             EEEEEEcCCCCCcccchhHHHHH-----HHHHHcCCCE----------EEEECCCC-HH-HHHHHHHHhcccccccCC-C
Confidence            58899999999999      677     8899999988          33444321 11 11111111        24 4


Q ss_pred             CCCCCC--CCccceechhhhccCc
Q psy7674         120 PTYPDI--PGAHLGITSDDLFSLN  141 (164)
Q Consensus       120 ~~~p~i--~g~~~v~~~~~~~~~~  141 (164)
                      +.+|.+  .| +++.+++++..+.
T Consensus        71 ~tvP~vfi~g-~~iGG~d~l~~l~   93 (111)
T 2ct6_A           71 PLPPQIFNGD-RYCGDYDSFFESK   93 (111)
T ss_dssp             CCSCEEEETT-EEEEEHHHHHHHH
T ss_pred             CCCCEEEECC-EEEeCHHHHHHHH
Confidence            456663  44 7888888766554

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.50  E-value=0.00012  Score=58.53  Aligned_cols=89  Identities=17%  Similarity=0.138  Sum_probs=55.2

Q ss_pred             hhHHHHhhcCceEEee-EEEEe--e----CcEEEe--CCeeEEEEeceEEEecCCCCC--------------------CC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFV--D----KHRVKF--AGEERTVSAQNFIIAVGGRPT--------------------YP  123 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~--~----~~~v~v--~~~~~~~~~d~liiAtGs~~~--------------------~p  123 (164)
                      .+.+.+++.|++++.+ .++.+  +    ...+.+  ++  ..+.+|++|+|||+.+.                    .|
T Consensus       114 ~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~--g~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~  191 (401)
T 2gqf_A          114 MLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS--TQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIP  191 (401)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT--EEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECC--CEEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCccc
Confidence            3556677889999987 44444  3    333444  43  36999999999999873                    23


Q ss_pred             CCCCc-cceechhh-h---ccCcCCCCcEEEEC---------------CcHHHHHhhccc
Q psy7674         124 DIPGA-HLGITSDD-L---FSLNKDPGKVLLVG---------------ASYIALECAGCD  163 (164)
Q Consensus       124 ~i~g~-~~v~~~~~-~---~~~~~~~~~vvViG---------------gG~~g~E~A~~l  163 (164)
                      ..|+. ....+..+ +   +.....+.++.|+|               +|++++|++..+
T Consensus       192 ~~p~l~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~~~g~~l~t~~g~sG~~~l~~s~~~  251 (401)
T 2gqf_A          192 PRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFTHRGISGPAVLQISNYW  251 (401)
T ss_dssp             EEEESCCEECCGGGGGGGGGTTCEEEEEEEETTSCEEEEEEEECSSEEESHHHHHHTTTC
T ss_pred             CcceeeceecCCchhhcccCCCeeeeeEEEEcCCceEEeCEEEECCCccHHHHHHHHHHH
Confidence            34443 11122222 3   22223345666669               899999999875

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=97.38  E-value=4.8e-05  Score=50.10  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=46.8

Q ss_pred             cCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCC--eeEEEEeceEEEecCCCCCCCC--CC
Q psy7674          51 DNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAG--EERTVSAQNFIIAVGGRPTYPD--IP  126 (164)
Q Consensus        51 g~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~--~~~~~~~d~liiAtGs~~~~p~--i~  126 (164)
                      ....+++|+++|||||.+++     ..|++.|+++          ..+.++.  +...+ .+.+.-.+| .+.+|.  +.
T Consensus        15 ~~~~v~vy~~~~Cp~C~~ak-----~~L~~~~i~~----------~~~dvd~~~~~~~~-~~~l~~~~g-~~tvP~vfi~   77 (114)
T 3h8q_A           15 ERSRVVIFSKSYCPHSTRVK-----ELFSSLGVEC----------NVLELDQVDDGARV-QEVLSEITN-QKTVPNIFVN   77 (114)
T ss_dssp             HHCSEEEEECTTCHHHHHHH-----HHHHHTTCCC----------EEEETTTSTTHHHH-HHHHHHHHS-CCSSCEEEET
T ss_pred             ccCCEEEEEcCCCCcHHHHH-----HHHHHcCCCc----------EEEEecCCCChHHH-HHHHHHHhC-CCccCEEEEC
Confidence            34568999999999999999     8899999987          2344432  00110 112222355 445666  44


Q ss_pred             CccceechhhhccCc
Q psy7674         127 GAHLGITSDDLFSLN  141 (164)
Q Consensus       127 g~~~v~~~~~~~~~~  141 (164)
                      | +.+++++++..+.
T Consensus        78 g-~~igG~d~l~~l~   91 (114)
T 3h8q_A           78 K-VHVGGCDQTFQAY   91 (114)
T ss_dssp             T-EEEESHHHHHHHH
T ss_pred             C-EEEeCHHHHHHHH
Confidence            5 7888888776554

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.37  E-value=0.00011  Score=46.01  Aligned_cols=47  Identities=23%  Similarity=0.455  Sum_probs=38.6

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++.+|++.+++|..++++..   ...++.+.+..|.+++|++|++|++++
T Consensus        22 ~~~~L~~~~i~~~~~di~~~---~~~~~~l~~~~~~~~vP~l~~~g~~i~   68 (92)
T 2khp_A           22 AKALLARKGAEFNEIDASAT---PELRAEMQERSGRNTFPQIFIGSVHVG   68 (92)
T ss_dssp             HHHHHHHTTCCCEEEESTTS---HHHHHHHHHHHTSSCCCEEEETTEEEE
T ss_pred             HHHHHHHcCCCcEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEc
Confidence            35677888999999999865   667777777789999999999998666

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.37  E-value=7.8e-05  Score=45.49  Aligned_cols=47  Identities=30%  Similarity=0.517  Sum_probs=37.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++.+|++.+++|..++++..   .+.++.+.+..|.+++|++|++|+.++
T Consensus        17 ~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~l~~~g~~i~   63 (82)
T 1fov_A           17 AKALLSSKGVSFQELPIDGN---AAKREEMIKRSGRTTVPQIFIDAQHIG   63 (82)
T ss_dssp             HHHHHHHHTCCCEEEECTTC---SHHHHHHHHHHSSCCSCEEEETTEEEE
T ss_pred             HHHHHHHCCCCcEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEe
Confidence            34567778899999999875   556667777789999999999998665

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=97.36  E-value=5.9e-06  Score=55.35  Aligned_cols=71  Identities=20%  Similarity=0.202  Sum_probs=45.9

Q ss_pred             ceEEEeccCCccc------ccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecC-------CCC
Q psy7674          54 SVVIFSKSWCPFC------TKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVG-------GRP  120 (164)
Q Consensus        54 ~vvv~~~~~cp~~------~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtG-------s~~  120 (164)
                      .|+||+.++||||      .+++     .+|+++||+|          .++.++.+ . ...+.+.-.++       .++
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK-----~lL~~kgV~f----------eEidI~~d-~-~~r~eM~~~~~~~~~~~~G~~   63 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVL-----GFLEANKIGF----------EEKDIAAN-E-ENRKWMRENVPENSRPATGYP   63 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHH-----HHHHHTTCCE----------EEEECTTC-H-HHHHHHHHHSCGGGSCSSSSC
T ss_pred             CEEEEecCCCCCccchHHHHHHH-----HHHHHCCCce----------EEEECCCC-H-HHHHHHHHhccccccccCCCc
Confidence            3789999999999      5667     8999999998          44555331 1 11222333342       355


Q ss_pred             CCCCC-CCccceechhhhccCc
Q psy7674         121 TYPDI-PGAHLGITSDDLFSLN  141 (164)
Q Consensus       121 ~~p~i-~g~~~v~~~~~~~~~~  141 (164)
                      .+|.| -|..++++++|+..+.
T Consensus        64 tvPQIFi~~~~iGG~Dd~~~l~   85 (121)
T 1u6t_A           64 LPPQIFNESQYRGDYDAFFEAR   85 (121)
T ss_dssp             CSCEEEETTEEEEEHHHHHHHH
T ss_pred             CCCEEEECCEEEechHHHHHhh
Confidence            66664 3338899988776654

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.36  E-value=4.9e-06  Score=56.88  Aligned_cols=70  Identities=19%  Similarity=0.313  Sum_probs=46.5

Q ss_pred             CCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--
Q psy7674          52 NNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--  124 (164)
Q Consensus        52 ~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--  124 (164)
                      ...+++|++     +|||||.+++     .+|++.|++|          ..+.++.+ . ...+.+.--+| .+.+|.  
T Consensus        34 ~~~Vvvy~ks~~~~~~Cp~C~~ak-----~~L~~~gv~y----------~~vdI~~d-~-~~~~~L~~~~G-~~tvP~Vf   95 (135)
T 2wci_A           34 ENPILLYMKGSPKLPSCGFSAQAV-----QALAACGERF----------AYVDILQN-P-DIRAELPKYAN-WPTFPQLW   95 (135)
T ss_dssp             HCSEEEEESBCSSSBSSHHHHHHH-----HHHHTTCSCC----------EEEEGGGC-H-HHHHHHHHHHT-CCSSCEEE
T ss_pred             cCCEEEEEEecCCCCCCccHHHHH-----HHHHHcCCce----------EEEECCCC-H-HHHHHHHHHHC-CCCcCEEE
Confidence            557899999     8999999999     8899999987          33544321 1 12233333355 446676  


Q ss_pred             CCCccceechhhhccC
Q psy7674         125 IPGAHLGITSDDLFSL  140 (164)
Q Consensus       125 i~g~~~v~~~~~~~~~  140 (164)
                      +.| +.+++++++..+
T Consensus        96 I~G-~~iGG~d~l~~l  110 (135)
T 2wci_A           96 VDG-ELVGGCDIVIEM  110 (135)
T ss_dssp             ETT-EEEESHHHHHHH
T ss_pred             ECC-EEEEChHHHHHH
Confidence            345 788888777654

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.30  E-value=6.6e-05  Score=49.13  Aligned_cols=72  Identities=25%  Similarity=0.451  Sum_probs=44.7

Q ss_pred             cCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCe---eEEEEeceEEEecCCCCCCCC--C
Q psy7674          51 DNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPD--I  125 (164)
Q Consensus        51 g~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~---~~~~~~d~liiAtGs~~~~p~--i  125 (164)
                      ....+++|+++|||||...+     .+|+++++++.          .+.++..   ...+ .+.+--.+| .+.+|.  +
T Consensus        17 ~~~~v~vy~~~~Cp~C~~~~-----~~L~~~~i~~~----------~~di~~~~~~~~~~-~~~l~~~~g-~~tvP~ifi   79 (113)
T 3rhb_A           17 TENTVVIYSKTWCSYCTEVK-----TLFKRLGVQPL----------VVELDQLGPQGPQL-QKVLERLTG-QHTVPNVFV   79 (113)
T ss_dssp             HHSSEEEEECTTCHHHHHHH-----HHHHHTTCCCE----------EEEGGGSTTHHHHH-HHHHHHHHS-CCSSCEEEE
T ss_pred             hcCCEEEEECCCChhHHHHH-----HHHHHcCCCCe----------EEEeecCCCChHHH-HHHHHHHhC-CCCcCEEEE
Confidence            34568999999999999999     88999999872          3444210   0111 111222245 345666  3


Q ss_pred             CCccceechhhhccC
Q psy7674         126 PGAHLGITSDDLFSL  140 (164)
Q Consensus       126 ~g~~~v~~~~~~~~~  140 (164)
                      .| +.+.+++++..+
T Consensus        80 ~g-~~igG~~~~~~~   93 (113)
T 3rhb_A           80 CG-KHIGGCTDTVKL   93 (113)
T ss_dssp             TT-EEEESHHHHHHH
T ss_pred             CC-EEEcCcHHHHHH
Confidence            44 788888776544

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.21  E-value=6.3e-05  Score=61.99  Aligned_cols=20  Identities=25%  Similarity=0.227  Sum_probs=17.4

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+|+|||||+.|+.+|..|
T Consensus       212 ~~dVvIIGgG~AGl~aA~~l  231 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYS  231 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHH
T ss_pred             cccEEEECCcHHHHHHHHHH
Confidence            35799999999999999765

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.11  E-value=0.00019  Score=44.95  Aligned_cols=50  Identities=20%  Similarity=0.264  Sum_probs=39.1

Q ss_pred             cccccCCCCCccEEEEecCCCCh--hHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNG--AQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++.+|++.++.|+.++|+..+..  .++++.+.+..|..++|+++++|++++
T Consensus        28 ~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~   79 (92)
T 3ic4_A           28 TLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVL   79 (92)
T ss_dssp             HHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEE
T ss_pred             HHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEe
Confidence            45678888999999999976432  344577777789999999999998665

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.05  E-value=0.0002  Score=46.09  Aligned_cols=29  Identities=31%  Similarity=0.660  Sum_probs=26.5

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ...+++|+++|||+|...+     ..|++.++++
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak-----~~L~~~~i~y   49 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTK-----KLLTDLGVDF   49 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHH-----HHHHHHTBCE
T ss_pred             CCeEEEEcCCCCchHHHHH-----HHHHHcCCCc
Confidence            5679999999999999999     8899999987

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=96.98  E-value=1.5e-05  Score=65.43  Aligned_cols=56  Identities=21%  Similarity=0.078  Sum_probs=38.9

Q ss_pred             EeceEEEecCCCCCCCCCCCc--cceec---hhhhccC--------------cCCCCcEEEECCcHHHHHhhccc
Q psy7674         108 SAQNFIIAVGGRPTYPDIPGA--HLGIT---SDDLFSL--------------NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       108 ~~d~liiAtGs~~~~p~i~g~--~~v~~---~~~~~~~--------------~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .||+++++||++|+.|++.+.  +.+.+   ..+....              .....+|+|||||++|+++|..|
T Consensus        37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~L  111 (497)
T 2bry_A           37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVEL  111 (497)
T ss_dssp             HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHH
Confidence            578899999999887776553  33322   2222222              12347899999999999999876

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=96.98  E-value=0.00024  Score=44.25  Aligned_cols=46  Identities=17%  Similarity=0.398  Sum_probs=35.5

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhc-CCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERT-GQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++|..++++     .+.++.+.+.. |.+++|++|++|+.+++
T Consensus        22 ~~~~L~~~~i~~~~vdv~-----~~~~~~l~~~~~~~~~vP~l~~~g~~i~g   68 (89)
T 2klx_A           22 ARDLLDKKGVKYTDIDAS-----TSLRQEMVQRANGRNTFPQIFIGDYHVGG   68 (89)
T ss_dssp             HHHHHHHHTCCEEEECSC-----HHHHHHHHHHHHSSCCSCEEEETTEECCS
T ss_pred             HHHHHHHcCCCcEEEECC-----HHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence            345677778888888777     45566676777 99999999999987763

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.87  E-value=0.00029  Score=43.47  Aligned_cols=27  Identities=37%  Similarity=0.829  Sum_probs=24.4

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|+..+     ..|++.++++
T Consensus         5 ~v~ly~~~~Cp~C~~~~-----~~L~~~~i~~   31 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAK-----QWFEENNIAF   31 (89)
T ss_dssp             CEEEEECTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             EEEEEEcCCChhHHHHH-----HHHHHcCCCc
Confidence            57899999999999998     8899999887

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.80  E-value=0.00044  Score=44.59  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=44.4

Q ss_pred             CCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--
Q psy7674          52 NNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--  124 (164)
Q Consensus        52 ~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--  124 (164)
                      ...+++|++     +|||||...+     ..|++.+++|          ..+.++.+ . ...+.+.-.+| .+.+|.  
T Consensus        16 ~~~vvvf~~g~~~~~~C~~C~~~~-----~~L~~~~i~~----------~~vdi~~~-~-~~~~~l~~~~g-~~~vP~v~   77 (105)
T 2yan_A           16 KASVMLFMKGNKQEAKCGFSKQIL-----EILNSTGVEY----------ETFDILED-E-EVRQGLKAYSN-WPTYPQLY   77 (105)
T ss_dssp             SSSEEEEESBCSSSBCTTHHHHHH-----HHHHHHTCCC----------EEEEGGGC-H-HHHHHHHHHHT-CCSSCEEE
T ss_pred             cCCEEEEEecCCCCCCCccHHHHH-----HHHHHCCCCe----------EEEECCCC-H-HHHHHHHHHHC-CCCCCeEE
Confidence            345888998     9999999999     8889999887          23444321 1 11111222245 345665  


Q ss_pred             CCCccceechhhhccCc
Q psy7674         125 IPGAHLGITSDDLFSLN  141 (164)
Q Consensus       125 i~g~~~v~~~~~~~~~~  141 (164)
                      +.| +.+.+++++..+.
T Consensus        78 i~g-~~igg~d~~~~l~   93 (105)
T 2yan_A           78 VKG-ELVGGLDIVKELK   93 (105)
T ss_dssp             ETT-EEEECHHHHHHHH
T ss_pred             ECC-EEEeChHHHHHHH
Confidence            344 7788888776554

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.78  E-value=0.0005  Score=45.45  Aligned_cols=71  Identities=27%  Similarity=0.408  Sum_probs=42.7

Q ss_pred             CceEEEeccCCcccccc-cchhhHHHHhhcC---ceEEeeEEEEeeCcEEEeCCeeE-EEEeceEEEecCCCCCCCC--C
Q psy7674          53 NSVVIFSKSWCPFCTKA-KENNYEKELEKNK---IDYFNAKAVFVDKHRVKFAGEER-TVSAQNFIIAVGGRPTYPD--I  125 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~-~~~~~~~~l~~~g---v~~~~~~~~~~~~~~v~v~~~~~-~~~~d~liiAtGs~~~~p~--i  125 (164)
                      ..+++|+++|||||... +     ..|++.+   +++.          .+.++.... .-..+.+.-.+|. +.+|.  +
T Consensus        25 ~~Vvvf~~~~Cp~C~~alk-----~~L~~~~~~~i~~~----------~vdid~~~~~~~~~~~l~~~~g~-~tvP~vfi   88 (118)
T 3c1r_A           25 NEIFVASKTYCPYCHAALN-----TLFEKLKVPRSKVL----------VLQLNDMKEGADIQAALYEINGQ-RTVPNIYI   88 (118)
T ss_dssp             SSEEEEECSSCHHHHHHHH-----HHHTTSCCCGGGEE----------EEEGGGSTTHHHHHHHHHHHHSC-CSSCEEEE
T ss_pred             CcEEEEEcCCCcCHHHHHH-----HHHHHcCCCCCCeE----------EEECccCCChHHHHHHHHHHhCC-CCcCEEEE
Confidence            35889999999999999 7     8888888   7762          344422100 0011122223553 34565  3


Q ss_pred             CCccceechhhhccC
Q psy7674         126 PGAHLGITSDDLFSL  140 (164)
Q Consensus       126 ~g~~~v~~~~~~~~~  140 (164)
                      .| +.+.+++++..+
T Consensus        89 ~g-~~igG~d~l~~l  102 (118)
T 3c1r_A           89 NG-KHIGGNDDLQEL  102 (118)
T ss_dssp             TT-EEEESHHHHHHH
T ss_pred             CC-EEEEcHHHHHHH
Confidence            44 677777776554

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=96.77  E-value=0.00056  Score=43.73  Aligned_cols=30  Identities=37%  Similarity=0.716  Sum_probs=25.7

Q ss_pred             ecCCceEEEeccCCcccccccchhhHHHHhhcCce
Q psy7674          50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKID   84 (164)
Q Consensus        50 ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~   84 (164)
                      +....+++|+++|||+|...+     ..|++.+++
T Consensus         9 i~~~~v~~f~~~~C~~C~~~~-----~~L~~~~~~   38 (105)
T 1kte_A            9 IQPGKVVVFIKPTCPFCRKTQ-----ELLSQLPFK   38 (105)
T ss_dssp             CCTTCEEEEECSSCHHHHHHH-----HHHHHSCBC
T ss_pred             cccCCEEEEEcCCCHhHHHHH-----HHHHHcCCC
Confidence            345568999999999999988     888888888

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=96.72  E-value=0.00047  Score=46.43  Aligned_cols=73  Identities=18%  Similarity=0.307  Sum_probs=44.7

Q ss_pred             CCceEEEeccCCcccccc-cchhhHHHHhhcC---ceEEeeEEEEeeCcEEEeCCeeE-EEEeceEEEecCCCCCCCC--
Q psy7674          52 NNSVVIFSKSWCPFCTKA-KENNYEKELEKNK---IDYFNAKAVFVDKHRVKFAGEER-TVSAQNFIIAVGGRPTYPD--  124 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~-~~~~~~~~l~~~g---v~~~~~~~~~~~~~~v~v~~~~~-~~~~d~liiAtGs~~~~p~--  124 (164)
                      ...+++|+++|||||.+. +     ..|++.+   +++          ..+.++.... ....+.+.-.+|. +.+|.  
T Consensus        36 ~~~Vvvy~~~~Cp~C~~a~k-----~~L~~~~~~~i~~----------~~vdvd~~~~~~~~~~~L~~~~g~-~tVP~vf   99 (129)
T 3ctg_A           36 QKEVFVAAKTYCPYCKATLS-----TLFQELNVPKSKA----------LVLELDEMSNGSEIQDALEEISGQ-KTVPNVY   99 (129)
T ss_dssp             HSSEEEEECTTCHHHHHHHH-----HHHTTSCCCGGGE----------EEEEGGGSTTHHHHHHHHHHHHSC-CSSCEEE
T ss_pred             CCCEEEEECCCCCchHHHHH-----HHHHhcCccCCCc----------EEEEccccCCHHHHHHHHHHHhCC-CCCCEEE
Confidence            345899999999999999 8     8899988   776          2344422100 0011223333553 45666  


Q ss_pred             CCCccceechhhhccCc
Q psy7674         125 IPGAHLGITSDDLFSLN  141 (164)
Q Consensus       125 i~g~~~v~~~~~~~~~~  141 (164)
                      +.| +.+.+++++..+.
T Consensus       100 i~g-~~igG~d~l~~l~  115 (129)
T 3ctg_A          100 ING-KHIGGNSDLETLK  115 (129)
T ss_dssp             ETT-EEEESHHHHHHHH
T ss_pred             ECC-EEEcCHHHHHHHH
Confidence            344 7788888776543

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=96.72  E-value=0.00067  Score=44.37  Aligned_cols=30  Identities=43%  Similarity=0.715  Sum_probs=25.9

Q ss_pred             ecCCceEEEeccCCcccccccchhhHHHHhhcCce
Q psy7674          50 IDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKID   84 (164)
Q Consensus        50 ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~   84 (164)
                      +....+++|+++|||+|...+     ..|++.+++
T Consensus        16 i~~~~vv~f~~~~Cp~C~~~~-----~~L~~~~~~   45 (114)
T 2hze_A           16 LANNKVTIFVKYTCPFCRNAL-----DILNKFSFK   45 (114)
T ss_dssp             CCTTCEEEEECTTCHHHHHHH-----HHHTTSCBC
T ss_pred             hccCCEEEEEeCCChhHHHHH-----HHHHHcCCC
Confidence            345678999999999999998     888888888

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=96.62  E-value=0.00087  Score=41.60  Aligned_cols=27  Identities=26%  Similarity=0.957  Sum_probs=24.0

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|...+     ..|++.++++
T Consensus         7 ~v~~y~~~~C~~C~~~~-----~~L~~~~i~~   33 (89)
T 2klx_A            7 EIILYTRPNCPYCKRAR-----DLLDKKGVKY   33 (89)
T ss_dssp             CEEEESCSCCTTTHHHH-----HHHHHHTCCE
T ss_pred             eEEEEECCCChhHHHHH-----HHHHHcCCCc
Confidence            57899999999999988     7888888887

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.61  E-value=0.00079  Score=49.64  Aligned_cols=47  Identities=26%  Similarity=0.381  Sum_probs=37.9

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.++.|+.++|+.++..    +.|.+..|.+++|++|++|+++++
T Consensus       186 a~~~L~~~~i~~~~~~i~~~~~~----~~l~~~~g~~~vP~~~~~g~~i~g  232 (241)
T 1nm3_A          186 AKQLLHDKGLSFEEIILGHDATI----VSVRAVSGRTTVPQVFIGGKHIGG  232 (241)
T ss_dssp             HHHHHHHHTCCCEEEETTTTCCH----HHHHHHTCCSSSCEEEETTEEEES
T ss_pred             HHHHHHHcCCceEEEECCCchHH----HHHHHHhCCCCcCEEEECCEEEEC
Confidence            35577888999999999877442    566677899999999999998874

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=96.59  E-value=0.00048  Score=43.00  Aligned_cols=27  Identities=26%  Similarity=0.737  Sum_probs=24.3

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+.+|||+|.+.+     ..|++.++++
T Consensus        13 ~v~ly~~~~Cp~C~~~~-----~~L~~~gi~~   39 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTL-----EFLKREGVDF   39 (92)
T ss_dssp             SSEEEECTTCHHHHHHH-----HHHHHHTCCC
T ss_pred             eEEEEECCCChHHHHHH-----HHHHHcCCCc
Confidence            47899999999999998     8888889887

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=96.50  E-value=0.0012  Score=40.32  Aligned_cols=27  Identities=44%  Similarity=0.933  Sum_probs=20.6

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhh-----cCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEK-----NKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~-----~gv~~   85 (164)
                      .+++|+++|||+|...+     ..|++     .++++
T Consensus         2 ~v~~f~~~~C~~C~~~~-----~~l~~l~~~~~~i~~   33 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAK-----DLAEKLSNERDDFQY   33 (85)
T ss_dssp             EEEEECCTTSTHHHHHH-----HHHHHHHHHHSSCEE
T ss_pred             EEEEEeCCCCCCHHHHH-----HHHHHHHhcCCCceE
Confidence            47889999999999988     44444     56666

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=96.49  E-value=0.00057  Score=41.61  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=22.8

Q ss_pred             CceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ..+++|+++|||+|...+.. +.+.++++++++
T Consensus         2 ~~~~~f~~~~C~~C~~~~~~-l~~~~~~~~~~~   33 (80)
T 2k8s_A            2 ASKAIFYHAGCPVCVSAEQA-VANAIDPSKYTV   33 (80)
T ss_dssp             CEEEEEEECSCHHHHHHHHH-HHHHSCTTTEEE
T ss_pred             cceEEEeCCCCCchHHHHHH-HHHHHHhcCCeE
Confidence            35789999999999998721 223556666665

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=96.49  E-value=0.00099  Score=40.36  Aligned_cols=27  Identities=22%  Similarity=0.661  Sum_probs=23.6

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|...+     ..|++.++++
T Consensus         2 ~v~~f~~~~C~~C~~~~-----~~l~~~~i~~   28 (81)
T 1h75_A            2 RITIYTRNDCVQCHATK-----RAMENRGFDF   28 (81)
T ss_dssp             CEEEEECTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             EEEEEcCCCChhHHHHH-----HHHHHCCCCe
Confidence            47889999999999988     7788888887

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=96.45  E-value=0.0017  Score=42.05  Aligned_cols=49  Identities=45%  Similarity=0.691  Sum_probs=40.2

Q ss_pred             ccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           3 DIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      .+++++.+.+|.+++++..+++...++.+.+..|..++|++|++|+.++
T Consensus        37 ~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~~v~   85 (116)
T 2e7p_A           37 KQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIG   85 (116)
T ss_dssp             HHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEE
T ss_pred             HHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEEC
Confidence            3456667788999999998877777888887789999999999998554

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=96.43  E-value=0.0023  Score=38.70  Aligned_cols=46  Identities=13%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      ++++|++.+++|..++++..   .+..+.+.+ .|.+++|++|++|+.++
T Consensus        17 ~~~~l~~~~i~~~~vdi~~~---~~~~~~~~~-~g~~~vP~~~~~g~~~~   62 (81)
T 1h75_A           17 TKRAMENRGFDFEMINVDRV---PEAAEALRA-QGFRQLPVVIAGDLSWS   62 (81)
T ss_dssp             HHHHHHHTTCCCEEEETTTC---HHHHHHHHH-TTCCSSCEEEETTEEEE
T ss_pred             HHHHHHHCCCCeEEEECCCC---HHHHHHHHH-hCCCccCEEEECCEEEe
Confidence            35667788899999888876   445555544 58899999999987544

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=96.40  E-value=0.0022  Score=38.03  Aligned_cols=46  Identities=11%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID   51 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig   51 (164)
                      +..+|++.+++|..++++..   .+.++.+. ..|.+++|+++++|+.++
T Consensus        17 ~~~~l~~~~i~~~~~di~~~---~~~~~~~~-~~~~~~vP~l~~~g~~~~   62 (75)
T 1r7h_A           17 TKKALDRAGLAYNTVDISLD---DEARDYVM-ALGYVQAPVVEVDGEHWS   62 (75)
T ss_dssp             HHHHHHHTTCCCEEEETTTC---HHHHHHHH-HTTCBCCCEEEETTEEEE
T ss_pred             HHHHHHHcCCCcEEEECCCC---HHHHHHHH-HcCCCccCEEEECCeEEc
Confidence            35677888999999998876   45555564 468899999999887543

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.38  E-value=0.0013  Score=44.06  Aligned_cols=28  Identities=50%  Similarity=0.898  Sum_probs=24.3

Q ss_pred             CceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ..+++|+++|||+|+..+     ..|++.++++
T Consensus        27 ~~vvvf~~~~Cp~C~~~~-----~~L~~~~i~~   54 (130)
T 2cq9_A           27 NCVVIFSKTSCSYCTMAK-----KLFHDMNVNY   54 (130)
T ss_dssp             SSEEEEECSSCSHHHHHH-----HHHHHHTCCC
T ss_pred             CcEEEEEcCCChHHHHHH-----HHHHHcCCCc
Confidence            357889999999999988     7888888877

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=96.35  E-value=0.0013  Score=38.96  Aligned_cols=27  Identities=33%  Similarity=0.749  Sum_probs=23.6

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+.+|||+|...+     ..|++.++++
T Consensus         2 ~i~~y~~~~C~~C~~~~-----~~l~~~~i~~   28 (75)
T 1r7h_A            2 SITLYTKPACVQCTATK-----KALDRAGLAY   28 (75)
T ss_dssp             CEEEEECTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             eEEEEeCCCChHHHHHH-----HHHHHcCCCc
Confidence            46889999999999988     7888888887

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.34  E-value=0.0013  Score=39.80  Aligned_cols=27  Identities=33%  Similarity=0.816  Sum_probs=23.8

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|...+     ..+++.++++
T Consensus         2 ~i~~y~~~~C~~C~~~~-----~~l~~~~i~~   28 (82)
T 1fov_A            2 NVEIYTKETCPYCHRAK-----ALLSSKGVSF   28 (82)
T ss_dssp             CEEEEECSSCHHHHHHH-----HHHHHHTCCC
T ss_pred             cEEEEECCCChhHHHHH-----HHHHHCCCCc
Confidence            47899999999999988     7888888887

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=96.29  E-value=0.0016  Score=40.52  Aligned_cols=27  Identities=30%  Similarity=0.882  Sum_probs=24.2

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|+..+     ..|++.+++|
T Consensus         7 ~v~ly~~~~C~~C~~~~-----~~L~~~~i~~   33 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAK-----ALLARKGAEF   33 (92)
T ss_dssp             CEEEEECTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             cEEEEECCCChhHHHHH-----HHHHHcCCCc
Confidence            57899999999999988     7888889887

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=96.29  E-value=0.0014  Score=43.02  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=24.5

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +++|+.++||+|+.++     .+|+++|++|
T Consensus         2 i~iY~~~~C~~C~kak-----~~L~~~gi~~   27 (114)
T 1rw1_A            2 YVLYGIKACDTMKKAR-----TWLDEHKVAY   27 (114)
T ss_dssp             EEEEECSSCHHHHHHH-----HHHHHTTCCE
T ss_pred             EEEEECCCChHHHHHH-----HHHHHCCCce
Confidence            6899999999999999     8999999998

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=96.24  E-value=0.0014  Score=41.05  Aligned_cols=27  Identities=15%  Similarity=0.511  Sum_probs=23.7

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+++|||+|...+     ..|++.++++
T Consensus         2 ~vv~f~a~~C~~C~~~~-----~~L~~~~~~~   28 (87)
T 1ttz_A            2 ALTLYQRDDCHLCDQAV-----EALAQARAGA   28 (87)
T ss_dssp             CEEEEECSSCHHHHHHH-----HHHHHTTCCC
T ss_pred             EEEEEECCCCchHHHHH-----HHHHHHHHhh
Confidence            47899999999999999     8888888874

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.18  E-value=0.0013  Score=45.12  Aligned_cols=29  Identities=48%  Similarity=0.892  Sum_probs=25.3

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ...+++|+++|||+|...+     ..|++.++++
T Consensus        48 ~~~Vvvf~~~~Cp~C~~~k-----~~L~~~~i~~   76 (146)
T 2ht9_A           48 DNCVVIFSKTSCSYCTMAK-----KLFHDMNVNY   76 (146)
T ss_dssp             HCSEEEEECTTCHHHHHHH-----HHHHHHTCCC
T ss_pred             CCCEEEEECCCChhHHHHH-----HHHHHcCCCe
Confidence            4568899999999999988     7888888887

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.09  E-value=0.006  Score=44.85  Aligned_cols=84  Identities=27%  Similarity=0.394  Sum_probs=52.7

Q ss_pred             hHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCee
Q psy7674          25 AQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEE  104 (164)
Q Consensus        25 ~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~  104 (164)
                      ...++.|..+....           +....+++|+++|||||.+++     .+|+++|+++          +.+.++.+ 
T Consensus       153 ~~~~~il~~l~~~~-----------i~~~~i~ly~~~~Cp~C~~a~-----~~L~~~~i~~----------~~~~i~~~-  205 (241)
T 1nm3_A          153 SDADTMLKYLAPQH-----------QVQESISIFTKPGCPFCAKAK-----QLLHDKGLSF----------EEIILGHD-  205 (241)
T ss_dssp             SSHHHHHHHHCTTS-----------CCCCCEEEEECSSCHHHHHHH-----HHHHHHTCCC----------EEEETTTT-
T ss_pred             cCHHHHHHHhhhhc-----------cccceEEEEECCCChHHHHHH-----HHHHHcCCce----------EEEECCCc-
Confidence            45666666653221           345678999999999999999     8899999987          33444321 


Q ss_pred             EEEEeceEEEecCCCCCCCCC--CCccceechhhhcc
Q psy7674         105 RTVSAQNFIIAVGGRPTYPDI--PGAHLGITSDDLFS  139 (164)
Q Consensus       105 ~~~~~d~liiAtGs~~~~p~i--~g~~~v~~~~~~~~  139 (164)
                      .  ..+.+.-.+|. ..+|.+  .| +.+++++++..
T Consensus       206 ~--~~~~l~~~~g~-~~vP~~~~~g-~~i~g~~~i~~  238 (241)
T 1nm3_A          206 A--TIVSVRAVSGR-TTVPQVFIGG-KHIGGSDDLEK  238 (241)
T ss_dssp             C--CHHHHHHHTCC-SSSCEEEETT-EEEESHHHHHH
T ss_pred             h--HHHHHHHHhCC-CCcCEEEECC-EEEECHHHHHH
Confidence            1  11333333553 345653  44 67777777654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=96.05  E-value=0.0024  Score=41.66  Aligned_cols=27  Identities=15%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhh----cCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEK----NKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~----~gv~~   85 (164)
                      .+++|+++|||+|...+     ..|++    ++++|
T Consensus        31 ~vv~y~~~~C~~C~~a~-----~~L~~l~~e~~i~~   61 (107)
T 2fgx_A           31 KLVVYGREGCHLCEEMI-----ASLRVLQKKSWFEL   61 (107)
T ss_dssp             CEEEEECSSCHHHHHHH-----HHHHHHHHHSCCCC
T ss_pred             EEEEEeCCCChhHHHHH-----HHHHHHHHhcCCeE
Confidence            57899999999999988     44544    67777

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=95.89  E-value=0.00072  Score=41.29  Aligned_cols=41  Identities=29%  Similarity=0.578  Sum_probs=27.6

Q ss_pred             CCCccEEEEecCCCChhHHHHHHHhhcC--CCCcceEEeeceEecC
Q psy7674           9 PDYNFQVVELDKLPNGAQIQTALFERTG--QKTVPNIFIHGKHIDN   52 (164)
Q Consensus         9 ~~~~~~~~~i~~~~~~~~~~~~l~~~~g--~~~vp~v~i~~~~ig~   52 (164)
                      +++.+..++++..+.  . .+.+.+..|  ..++|++|++|+.+++
T Consensus        29 ~~i~~~~vdi~~~~~--~-~~~l~~~~~~~~~~vP~i~~~g~~i~~   71 (85)
T 1ego_A           29 DDFQYQYVDIRAEGI--T-KEDLQQKAGKPVETVPQIFVDQQHIGG   71 (85)
T ss_dssp             SSCEEEEECHHHHTC--C-SHHHHHHTCCCSCCSCEEEETTEEEES
T ss_pred             CCceEEEEecccChH--H-HHHHHHHhCCCCceeCeEEECCEEEEC
Confidence            567777777765432  1 134555567  7899999999987763

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=95.85  E-value=0.0029  Score=41.94  Aligned_cols=26  Identities=27%  Similarity=0.598  Sum_probs=24.4

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +++|+.++||+|++++     .+|+++|++|
T Consensus         2 i~iY~~~~C~~c~ka~-----~~L~~~gi~~   27 (120)
T 3l78_A            2 VTLFLSPSCTSCRKAR-----AWLNRHDVVF   27 (120)
T ss_dssp             EEEEECSSCHHHHHHH-----HHHHHTTCCE
T ss_pred             EEEEeCCCCHHHHHHH-----HHHHHcCCCe
Confidence            6789999999999999     8999999998

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.83  E-value=0.025  Score=45.31  Aligned_cols=80  Identities=15%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEEE
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERTV  107 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~  107 (164)
                      .+.|++-.++          +.+++++.+..  .|.........+.+.+++.||+++.+ .+..++...+.+ ++  +.+
T Consensus       150 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g--~~~  227 (437)
T 4eqs_A          150 VLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSG--KVE  227 (437)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTS--CEE
T ss_pred             EEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCCeeeecCC--eEE
Confidence            4455555555          66777776644  33444444556778889999999988 566677777777 55  679


Q ss_pred             EeceEEEecCCCCCCC
Q psy7674         108 SAQNFIIAVGGRPTYP  123 (164)
Q Consensus       108 ~~d~liiAtGs~~~~p  123 (164)
                      .+|.+++|+|.+|+..
T Consensus       228 ~~D~vl~a~G~~Pn~~  243 (437)
T 4eqs_A          228 HYDMIIEGVGTHPNSK  243 (437)
T ss_dssp             ECSEEEECCCEEESCG
T ss_pred             eeeeEEEEeceecCcH
Confidence            9999999999988653

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=95.82  E-value=0.0018  Score=51.06  Aligned_cols=79  Identities=25%  Similarity=0.339  Sum_probs=48.2

Q ss_pred             ecCCceEEEeccCCcccccccchhhHH-HHhhcCceEEeeEEEEeeCcEEEeCCe-eEEEEeceEEEecCCCCCCCC--C
Q psy7674          50 IDNNSVVIFSKSWCPFCTKAKENNYEK-ELEKNKIDYFNAKAVFVDKHRVKFAGE-ERTVSAQNFIIAVGGRPTYPD--I  125 (164)
Q Consensus        50 ig~d~vvv~~~~~cp~~~~~~~~~~~~-~l~~~gv~~~~~~~~~~~~~~v~v~~~-~~~~~~d~liiAtGs~~~~p~--i  125 (164)
                      +....++||+++|||||.+++     + +|+++++++..  .     ..+.++.. ......+.|.-.+| .+.+|.  |
T Consensus       258 I~~~~VvVYsk~~CPyC~~Ak-----~~LL~~~gV~y~e--i-----dVlEld~~~~~~e~~~~L~~~tG-~~TVPqVFI  324 (362)
T 2jad_A          258 IAENEIFVASKTYCPYSHAAL-----NTLFEKLKVPRSK--V-----LVLQLNDMKEGADIQAALYEING-QRTVPNIYI  324 (362)
T ss_dssp             HHTCSEEEEECTTCHHHHHHH-----HHHHTTTCCCTTT--E-----EEEEGGGSTTHHHHHHHHHHHHC-CCSSCEEEE
T ss_pred             hccCCEEEEEcCCCcchHHHH-----HHHHHHcCCCcce--E-----EEEEeccccCCHHHHHHHHHHHC-CCCcCEEEE
Confidence            558899999999999999998     6 68888987611  0     01122110 00011133333356 446776  3


Q ss_pred             CCccceechhhhccCcC
Q psy7674         126 PGAHLGITSDDLFSLNK  142 (164)
Q Consensus       126 ~g~~~v~~~~~~~~~~~  142 (164)
                      .| +.+++++++..+.+
T Consensus       325 ~G-k~IGG~DdL~~L~~  340 (362)
T 2jad_A          325 NG-KHIGGNDDLQELRE  340 (362)
T ss_dssp             TT-EEEESHHHHHHHHH
T ss_pred             CC-EEEEChHHHHHhhh
Confidence            55 78888888776643

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=95.72  E-value=0.0063  Score=36.76  Aligned_cols=41  Identities=27%  Similarity=0.484  Sum_probs=29.8

Q ss_pred             cccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           4 IQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         4 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      -++++.+.++.++++|.+++..   +.. +..|.+++|+++++|+
T Consensus        24 ~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~gv~~vPt~~i~g~   64 (80)
T 2k8s_A           24 NAIDPSKYTVEIVHLGTDKARI---AEA-EKAGVKSVPALVIDGA   64 (80)
T ss_dssp             HHSCTTTEEEEEEETTTCSSTH---HHH-HHHTCCEEEEEEETTE
T ss_pred             HHHHhcCCeEEEEEecCChhhH---HHH-HHcCCCcCCEEEECCE
Confidence            3788888899999998742112   222 3458899999999887

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=95.65  E-value=0.0034  Score=41.53  Aligned_cols=27  Identities=41%  Similarity=0.543  Sum_probs=25.0

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+.++||+|++++     .+|+++|++|
T Consensus         6 ~i~iY~~~~C~~C~ka~-----~~L~~~gi~y   32 (120)
T 2kok_A            6 SVTIYGIKNCDTMKKAR-----IWLEDHGIDY   32 (120)
T ss_dssp             CEEEEECSSCHHHHHHH-----HHHHHHTCCE
T ss_pred             EEEEEECCCChHHHHHH-----HHHHHcCCcE
Confidence            47899999999999999     8999999998

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=95.59  E-value=0.0037  Score=39.84  Aligned_cols=29  Identities=31%  Similarity=0.658  Sum_probs=22.4

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHh--hcCceE
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELE--KNKIDY   85 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~--~~gv~~   85 (164)
                      ...+++|+++|||+|...+     ..|+  ..++.|
T Consensus        16 ~~~v~~f~~~~C~~C~~~~-----~~L~~l~~~i~~   46 (100)
T 1wjk_A           16 LPVLTLFTKAPCPLCDEAK-----EVLQPYKDRFIL   46 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHH-----HHTSTTSSSSEE
T ss_pred             CCEEEEEeCCCCcchHHHH-----HHHHHhhhCCeE
Confidence            3458889999999999988     6666  345665

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=95.51  E-value=0.0035  Score=40.47  Aligned_cols=27  Identities=37%  Similarity=0.859  Sum_probs=22.0

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|.++|||+|+..+     ..+++.++++
T Consensus        21 ~vv~f~a~~C~~C~~~~-----~~l~~~~~~~   47 (116)
T 2e7p_A           21 PVVVFSKTYCGYCNRVK-----QLLTQVGASY   47 (116)
T ss_dssp             SEEEEECTTCHHHHHHH-----HHHHHHTCCC
T ss_pred             CEEEEECCCChhHHHHH-----HHHHHcCCCe
Confidence            56779999999999887     6677777765

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=95.48  E-value=0.015  Score=49.25  Aligned_cols=53  Identities=17%  Similarity=0.151  Sum_probs=38.3

Q ss_pred             hHHHHhh-cCceEEeeEEEEe--eCcE---EEe-CCeeEEEEeceEEEecCCCCCCCCCCCc
Q psy7674          74 YEKELEK-NKIDYFNAKAVFV--DKHR---VKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA  128 (164)
Q Consensus        74 ~~~~l~~-~gv~~~~~~~~~~--~~~~---v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~  128 (164)
                      +.+.+++ .|++++.++++.+  +...   +.+ ++  ..+.+|.+|+|||+.+..+.++|.
T Consensus       130 L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG--~~I~Ad~VVLATGt~s~~~~i~G~  189 (651)
T 3ces_A          130 VRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMG--LKFRAKAVVLTVGTFLDGKIHIGL  189 (651)
T ss_dssp             HHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTS--EEEEEEEEEECCSTTTCCEEECC-
T ss_pred             HHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCC--CEEECCEEEEcCCCCccCccccCc
Confidence            4556666 6999987777776  3332   333 44  679999999999999887777774

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=95.46  E-value=0.0049  Score=41.49  Aligned_cols=27  Identities=30%  Similarity=0.641  Sum_probs=24.7

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+.++||+|..++     .+|++.|++|
T Consensus         2 mi~lY~~~~C~~C~ka~-----~~L~~~gi~y   28 (132)
T 1z3e_A            2 MVTLYTSPSCTSCRKAR-----AWLEEHEIPF   28 (132)
T ss_dssp             CEEEEECTTCHHHHHHH-----HHHHHTTCCE
T ss_pred             eEEEEeCCCChHHHHHH-----HHHHHcCCce
Confidence            36899999999999999     8899999998

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=94.95  E-value=0.0079  Score=39.88  Aligned_cols=27  Identities=30%  Similarity=0.599  Sum_probs=24.9

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      -+.+|..++||+|++++     .+|+++|++|
T Consensus         4 Mi~iY~~~~C~~c~ka~-----~~L~~~gi~~   30 (120)
T 3fz4_A            4 MLTFYEYPKCSTCRRAK-----AELDDLAWDY   30 (120)
T ss_dssp             SEEEEECSSCHHHHHHH-----HHHHHHTCCE
T ss_pred             eEEEEeCCCChHHHHHH-----HHHHHcCCce
Confidence            46789999999999999     8999999998

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=94.93  E-value=0.0069  Score=40.17  Aligned_cols=27  Identities=37%  Similarity=0.621  Sum_probs=24.9

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+.++||+|++++     .+|+++|++|
T Consensus         5 ~i~iY~~p~C~~c~ka~-----~~L~~~gi~~   31 (120)
T 3gkx_A            5 KTLFLQYPACSTCQKAK-----KWLIENNIEY   31 (120)
T ss_dssp             CCEEEECTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             EEEEEECCCChHHHHHH-----HHHHHcCCce
Confidence            36889999999999999     8999999998

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=94.86  E-value=0.007  Score=41.32  Aligned_cols=27  Identities=4%  Similarity=0.101  Sum_probs=24.8

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+.++||+|++++     .+|+++|++|
T Consensus         3 ~itiY~~p~C~~crkak-----~~L~~~gi~~   29 (141)
T 1s3c_A            3 NITIYHNPASGTSRNTL-----EMIRNSGTEP   29 (141)
T ss_dssp             CCEEECCTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             cEEEEECCCChHHHHHH-----HHHHHcCCCE
Confidence            46899999999999999     8999999987

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=94.76  E-value=0.0074  Score=40.08  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             eEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      +++|+.++||+|++++     .+|+++|++|
T Consensus         7 i~iY~~p~C~~c~ka~-----~~L~~~gi~~   32 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETL-----ALVEQQGITP   32 (121)
T ss_dssp             CEEECCTTCHHHHHHH-----HHHHTTTCCC
T ss_pred             EEEEECCCCHHHHHHH-----HHHHHcCCCc
Confidence            7899999999999999     8999999998

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=94.61  E-value=0.007  Score=46.42  Aligned_cols=122  Identities=12%  Similarity=0.013  Sum_probs=71.3

Q ss_pred             HHHHHhhcCCCCcceEEeeceEec------------CCceEEEeccC-------Cccccccc---chhhHHHHhhcCceE
Q psy7674          28 QTALFERTGQKTVPNIFIHGKHID------------NNSVVIFSKSW-------CPFCTKAK---ENNYEKELEKNKIDY   85 (164)
Q Consensus        28 ~~~l~~~~g~~~vp~v~i~~~~ig------------~d~vvv~~~~~-------cp~~~~~~---~~~~~~~l~~~gv~~   85 (164)
                      ++++..+......-.+.|++-+.|            +-++++|.+..       ++.|+..+   ......++++.|+++
T Consensus        54 ~~~~~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~  133 (326)
T 3fpz_A           54 SRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPY  133 (326)
T ss_dssp             HHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCC
T ss_pred             HHHHhhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEE
Confidence            334444444555667777775444            45788888743       23344333   234556778889987


Q ss_pred             EeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCcc--ceechhhhc---cCcCCCCcEEEECCcHHHHHhh
Q psy7674          86 FNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH--LGITSDDLF---SLNKDPGKVLLVGASYIALECA  160 (164)
Q Consensus        86 ~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~--~v~~~~~~~---~~~~~~~~vvViGgG~~g~E~A  160 (164)
                      ...            +.  .....+..+++++..++.+.++|.+  ......++.   ......++++++|+|++++|.|
T Consensus       134 ~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viggg~~av~~a  199 (326)
T 3fpz_A          134 EDE------------GD--YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQA  199 (326)
T ss_dssp             EEC------------SS--EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEEESSCSSSSCEEEEEEEEEHHHHTC
T ss_pred             EEC------------Cc--ceecceeEEEEcchhhhccccccceeecccccceeeccCCcccCCCEEEEEccCceeeehh
Confidence            532            11  2334455666777777777788751  111111111   1123458999999999999999


Q ss_pred             ccc
Q psy7674         161 GCD  163 (164)
Q Consensus       161 ~~l  163 (164)
                      ..+
T Consensus       200 ~~~  202 (326)
T 3fpz_A          200 HGT  202 (326)
T ss_dssp             TTS
T ss_pred             hhh
Confidence            765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.58  E-value=0.075  Score=42.55  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF---AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v---~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +..++++.+..  .|+........+.+.+++.|++++.+ ++..++  ...+.+   ++  ..+.+|.+++|||.+|+.+
T Consensus       190 g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          190 GAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGG--EVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             TCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEECCT
T ss_pred             CCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCC--eEEEcCEEEECcCCCcCCC
Confidence            45667776543  34333333445667788899999987 555554  333433   34  6799999999999998875


Q ss_pred             C
Q psy7674         124 D  124 (164)
Q Consensus       124 ~  124 (164)
                      .
T Consensus       268 ~  268 (455)
T 2yqu_A          268 G  268 (455)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.28  E-value=0.2  Score=39.98  Aligned_cols=84  Identities=19%  Similarity=0.198  Sum_probs=53.4

Q ss_pred             cceEEeeceEec----------CCceEEEeccCCc---ccccccchhhHHHHhhcCceEEee-EEEEeeCc----EEEeC
Q psy7674          40 VPNIFIHGKHID----------NNSVVIFSKSWCP---FCTKAKENNYEKELEKNKIDYFNA-KAVFVDKH----RVKFA  101 (164)
Q Consensus        40 vp~v~i~~~~ig----------~d~vvv~~~~~cp---~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~----~v~v~  101 (164)
                      -..+.|++-.+|          +..++++.+...+   +........+.+.+++.|++++.+ .+..++..    .+..+
T Consensus       150 ~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~  229 (447)
T 1nhp_A          150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTD  229 (447)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEEC
Confidence            344556665455          5577777765422   222222345567788899999987 45556432    23345


Q ss_pred             CeeEEEEeceEEEecCCCCCCCCC
Q psy7674         102 GEERTVSAQNFIIAVGGRPTYPDI  125 (164)
Q Consensus       102 ~~~~~~~~d~liiAtGs~~~~p~i  125 (164)
                      +  ..+.+|.+++|+|.+|+.+.+
T Consensus       230 ~--~~i~~d~vi~a~G~~p~~~~~  251 (447)
T 1nhp_A          230 K--NAYDADLVVVAVGVRPNTAWL  251 (447)
T ss_dssp             S--CEEECSEEEECSCEEESCGGG
T ss_pred             C--CEEECCEEEECcCCCCChHHH
Confidence            5  579999999999999876543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.17  E-value=0.071  Score=42.84  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=48.0

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +.+++++.+..  .|+..+.....+.+.+++.||+++.+ .+..++...+.+   +++...+.+|.+++|||.+|+.+.
T Consensus       194 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~  272 (458)
T 1lvl_A          194 GAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKG  272 (458)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred             CCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence            55677776543  33333333345567788899999987 566665432444   232257999999999999988754

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=94.14  E-value=0.012  Score=38.83  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+.+|..++|++|++++     .+|+++|++|
T Consensus         5 ~i~iY~~p~C~~c~ka~-----~~L~~~gi~~   31 (119)
T 3f0i_A            5 SVVIYHNPKCSKSRETL-----ALLENQGIAP   31 (119)
T ss_dssp             CCEEECCTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             EEEEEECCCChHHHHHH-----HHHHHcCCce
Confidence            36889999999999999     8999999987

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=93.95  E-value=0.025  Score=45.82  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=34.2

Q ss_pred             hHHHHhhcCceEEeeE-EEEe--eCcEE---Ee-CCeeEEEEeceEEEecCCCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNAK-AVFV--DKHRV---KF-AGEERTVSAQNFIIAVGGRPTYPDI  125 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~-~~~~--~~~~v---~v-~~~~~~~~~d~liiAtGs~~~~p~i  125 (164)
                      +.+.+++.|++++.++ + .+  +...+   .+ +.+ ..+.+|.+|+|||+.+..+++
T Consensus       125 L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~-g~~~a~~VVlAtGg~~~~~~~  181 (472)
T 2e5v_A          125 LLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRG-LVEDVDKLVLATGGYSYLYEY  181 (472)
T ss_dssp             HHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTE-EECCCSEEEECCCCCGGGSSS
T ss_pred             HHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCC-CeEEeeeEEECCCCCcccCcc
Confidence            4455667899999885 5 54  33433   33 222 357799999999999877664

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=93.95  E-value=0.11  Score=39.14  Aligned_cols=74  Identities=12%  Similarity=0.121  Sum_probs=43.6

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceEEee-EEEEeeCc--E---EEe-C----CeeEEEEeceEEEecCCCC
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKH--R---VKF-A----GEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~--~---v~v-~----~~~~~~~~d~liiAtGs~~  120 (164)
                      ...++++.+...+.........+.+.+++.||+++.+ .+..++..  .   +.+ +    ++...+.+|.+++|+|.+|
T Consensus       168 g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          168 ASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             SSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEE
T ss_pred             CCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCC
Confidence            3455666654333211111223445667789999987 55555321  1   444 3    4335799999999999988


Q ss_pred             CCCCC
Q psy7674         121 TYPDI  125 (164)
Q Consensus       121 ~~p~i  125 (164)
                      ....+
T Consensus       248 ~~~~~  252 (320)
T 1trb_A          248 NTAIF  252 (320)
T ss_dssp             SCGGG
T ss_pred             ChHHh
Confidence            75433

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.84  E-value=0.1  Score=38.56  Aligned_cols=48  Identities=15%  Similarity=0.125  Sum_probs=37.2

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCc-EEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKH-RVKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~-~v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+.+++.||+++...+..++.. .+.+ ++  +.+.+|.+++|+|.+|..+
T Consensus       180 ~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~  229 (297)
T 3fbs_A          180 QHALLAARGVRVETTRIREIAGHADVVLADG--RSIALAGLFTQPKLRITVD  229 (297)
T ss_dssp             HHHHHHHTTCEEECSCEEEEETTEEEEETTS--CEEEESEEEECCEEECCCS
T ss_pred             HHHHHHHCCcEEEcceeeeeecCCeEEeCCC--CEEEEEEEEEccCcccCch
Confidence            55778889999987666667654 5666 55  6799999999999988754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.77  E-value=0.15  Score=40.20  Aligned_cols=69  Identities=9%  Similarity=0.017  Sum_probs=46.6

Q ss_pred             CCceEEEeccCCcc---cccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWCPF---CTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~cp~---~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +..++++.+..-+.   ........+.+.+++.||+++.+ .+..++...+.+ ++  +.+.+|.+++|+|.+|+.
T Consensus       168 g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g--~~i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          168 GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDG--TRIAADMVVVGIGVLAND  241 (408)
T ss_dssp             TCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEETTEEEETTS--CEEECSEEEECSCEEECC
T ss_pred             CCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEECCEEEECCC--CEEEcCEEEECcCCCccH
Confidence            45677777643221   22222344567788999999988 555565335666 55  679999999999998875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=93.68  E-value=0.16  Score=42.07  Aligned_cols=80  Identities=8%  Similarity=0.074  Sum_probs=51.4

Q ss_pred             eEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEeeE-EEEee--CcEEEe---CCee
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KHRVKF---AGEE  104 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~~v~v---~~~~  104 (164)
                      .+.|++-.||          +-.++++.++. .|.........+.+.|++.|++++.+. +..+.  ...+.+   ++  
T Consensus       226 lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~--  303 (542)
T 4b1b_A          226 TLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDK--  303 (542)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTS--
T ss_pred             EEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCC--
Confidence            4566665566          55666666543 333333334456788899999999883 44432  333333   34  


Q ss_pred             EEEEeceEEEecCCCCCCC
Q psy7674         105 RTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus       105 ~~~~~d~liiAtGs~~~~p  123 (164)
                      ..+.+|.+++|+|-+|+.-
T Consensus       304 ~~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          304 TSELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             CEEEESEEEECSCEEESCG
T ss_pred             CeEEEEEEEEcccccCCcc
Confidence            5678999999999888764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.67  E-value=0.24  Score=40.11  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=53.1

Q ss_pred             cceEEeeceEec----------CCceEEEeccC--Cc-ccccccchhhHHHHhhcCceEEee-EEEEeeCc----EEEeC
Q psy7674          40 VPNIFIHGKHID----------NNSVVIFSKSW--CP-FCTKAKENNYEKELEKNKIDYFNA-KAVFVDKH----RVKFA  101 (164)
Q Consensus        40 vp~v~i~~~~ig----------~d~vvv~~~~~--cp-~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~----~v~v~  101 (164)
                      -..++|++-.++          ...++++.+..  .| .........+.+.+++.||+++.+ .+..++..    .+.++
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~~  274 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITD  274 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEECSSSCCEEEES
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEEC
Confidence            345666665555          55777777643  22 222223344567788899999987 45555421    24445


Q ss_pred             CeeEEEEeceEEEecCCCCCCC
Q psy7674         102 GEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus       102 ~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +  ..+.+|.+++|+|.+|+.+
T Consensus       275 g--~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          275 K--NEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             S--CEEECSEEEECCCEEECCG
T ss_pred             C--cEEECCEEEECCCCCcChH
Confidence            5  6799999999999988754

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=93.45  E-value=0.11  Score=35.93  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=34.4

Q ss_pred             hhhHHHHhhcCceEEeeEEEEee--Cc--EEEeCCeeEEEEeceEEEecCCCCCC
Q psy7674          72 NNYEKELEKNKIDYFNAKAVFVD--KH--RVKFAGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~~~~~~~--~~--~v~v~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      ..+.+.+++.|++++.++++.++  ..  .+.+++  ..+.+|.+|+|||.+|.+
T Consensus        60 ~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~--g~i~ad~vI~A~G~~~~~  112 (180)
T 2ywl_A           60 RRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEE--GVEKAERLLLCTHKDPTL  112 (180)
T ss_dssp             HHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSS--CEEEEEEEEECCTTCCHH
T ss_pred             HHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECC--CEEEECEEEECCCCCCCc
Confidence            34567788889999888555553  22  233333  278999999999999854

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=93.41  E-value=0.082  Score=33.38  Aligned_cols=42  Identities=19%  Similarity=0.353  Sum_probs=26.0

Q ss_pred             cccccCC--CCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceE
Q psy7674           2 VDIQTAP--PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKH   49 (164)
Q Consensus         2 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~   49 (164)
                      ++++|++  .++.|..++++...+     ..+.+..| +++|++|++|+.
T Consensus        33 ~~~~L~~l~~~i~~~~vdi~~~~~-----~el~~~~g-~~vP~l~~~g~~   76 (100)
T 1wjk_A           33 AKEVLQPYKDRFILQEVDITLPEN-----STWYERYK-FDIPVFHLNGQF   76 (100)
T ss_dssp             HHHHTSTTSSSSEEEEEETTSSTT-----HHHHHHSS-SSCSEEEESSSE
T ss_pred             HHHHHHHhhhCCeEEEEECCCcch-----HHHHHHHC-CCCCEEEECCEE
Confidence            4556663  346666666662121     33444568 999999999873

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=93.20  E-value=0.16  Score=40.43  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~  121 (164)
                      .+++.++++||+++.+ .+..++...+.+   +++.+++.+|.+++++|.+|.
T Consensus       205 ~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~  257 (430)
T 3hyw_A          205 LVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP  257 (430)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECC
T ss_pred             HHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCc
Confidence            4567788999999998 566787776665   444568999999999997764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=93.02  E-value=0.052  Score=32.35  Aligned_cols=17  Identities=35%  Similarity=0.938  Sum_probs=14.5

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .+++|..+|||+|....
T Consensus         5 ~vv~f~~~~C~~C~~~~   21 (85)
T 1fo5_A            5 KIELFTSPMCPHCPAAK   21 (85)
T ss_dssp             EEEEEECCCSSCCCTHH
T ss_pred             EEEEEeCCCCCchHHHH
Confidence            36779999999999876

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.99  E-value=0.25  Score=39.49  Aligned_cols=73  Identities=22%  Similarity=0.319  Sum_probs=46.2

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEE--Ee--CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRV--KF--AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v--~v--~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +.+++++.+..  .|.........+.+.+++.||+++.+ .+..++  ...+  .+  +++...+.+|.+++|+|.+|+.
T Consensus       193 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          193 GTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             TCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred             CCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence            55677777643  23222222334567788899999987 455553  2223  32  2334679999999999999876


Q ss_pred             CC
Q psy7674         123 PD  124 (164)
Q Consensus       123 p~  124 (164)
                      ..
T Consensus       273 ~~  274 (455)
T 1ebd_A          273 DE  274 (455)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=92.90  E-value=0.051  Score=32.39  Aligned_cols=18  Identities=33%  Similarity=0.907  Sum_probs=15.2

Q ss_pred             ceEEEeccCCcccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAKE   71 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~   71 (164)
                      .+++|..+|||+|.....
T Consensus         4 ~vv~f~~~~C~~C~~~~~   21 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIE   21 (85)
T ss_dssp             CEEEESCSSSCCSTTHHH
T ss_pred             EEEEEECCCCcchHHHHH
Confidence            467899999999998763

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=92.89  E-value=0.19  Score=41.56  Aligned_cols=79  Identities=14%  Similarity=0.247  Sum_probs=51.3

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--cEEEe-CCeeE
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--HRVKF-AGEER  105 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~  105 (164)
                      .++|++..++          +..++++.+..  .|.........+.+.+++.||+++.+ .+..++.  ..+.+ ++  +
T Consensus       190 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g--~  267 (588)
T 3ics_A          190 ATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSG--S  267 (588)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTS--C
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCC--C
Confidence            4556655454          55667776543  22212222334567788899999987 4555643  45666 45  6


Q ss_pred             EEEeceEEEecCCCCCC
Q psy7674         106 TVSAQNFIIAVGGRPTY  122 (164)
Q Consensus       106 ~~~~d~liiAtGs~~~~  122 (164)
                      .+.+|.+++|||.+|+.
T Consensus       268 ~i~~D~Vi~a~G~~p~~  284 (588)
T 3ics_A          268 VIQTDMLILAIGVQPES  284 (588)
T ss_dssp             EEECSEEEECSCEEECC
T ss_pred             EEEcCEEEEccCCCCCh
Confidence            79999999999988875

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=92.85  E-value=0.15  Score=40.04  Aligned_cols=66  Identities=15%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             ceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674          54 SVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        54 ~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~  121 (164)
                      .++++.... .|...+.....+.+.+++.||+++.+ .++.++.+.+.+ ++  +.+.+|.+++|+|.+|.
T Consensus       203 ~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g--~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          203 HVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKG--NTIPADITILLPPYTGN  271 (409)
T ss_dssp             EEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTS--CEEECSEEEEECCEECC
T ss_pred             EEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCC--CEEeeeEEEECCCCCcc
Confidence            455565543 12111222334567788999999987 567787777776 55  67999999999998764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.69  E-value=0.32  Score=39.49  Aligned_cols=70  Identities=21%  Similarity=0.298  Sum_probs=44.4

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEe-CCeeEE-EEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKF-AGEERT-VSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v-~~~~~~-~~~d~liiAtGs~~~  121 (164)
                      +..++++.+..  .|...+.....+.+.+++.||+++.+ .+..++.   .  .+.+ ++  +. +.+|.+++|+|.+|+
T Consensus       199 g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          199 GIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG--RIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             TCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTS--CEEEEESEEEECCCBCCT
T ss_pred             CCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCC--cEEEECCEEEECCCCCcC
Confidence            44566666533  22222222334567788999999988 4555532   2  3444 45  45 899999999999987


Q ss_pred             CC
Q psy7674         122 YP  123 (164)
Q Consensus       122 ~p  123 (164)
                      ..
T Consensus       277 ~~  278 (500)
T 1onf_A          277 TE  278 (500)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=92.65  E-value=0.21  Score=39.94  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=45.9

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +..++++.+..  .|...+.....+.+.+++.|++++.+ .+..++.   .  .+.+ ++  +.+.+|.+++|+|.+|+.
T Consensus       190 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          190 GAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG--RSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEESC
T ss_pred             CCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCC--cEEEcCEEEECCCCCcCC
Confidence            55677777643  23222222334567788899999988 4555532   2  3444 45  579999999999999876


Q ss_pred             C
Q psy7674         123 P  123 (164)
Q Consensus       123 p  123 (164)
                      .
T Consensus       268 ~  268 (450)
T 1ges_A          268 D  268 (450)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=92.60  E-value=0.21  Score=40.19  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=45.8

Q ss_pred             CCceEEEeccCC--c-ccccccchhhHHHHhhcCceEEee-EEEEee--Cc---EEEe----CCeeEEEEeceEEEecCC
Q psy7674          52 NNSVVIFSKSWC--P-FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH---RVKF----AGEERTVSAQNFIIAVGG  118 (164)
Q Consensus        52 ~d~vvv~~~~~c--p-~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~---~v~v----~~~~~~~~~d~liiAtGs  118 (164)
                      +..++++.+..-  | .........+.+.+++.||+++.+ .+..++  ..   .+.+    ++++..+.+|.+++|+|.
T Consensus       201 g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~  280 (474)
T 1zmd_A          201 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR  280 (474)
T ss_dssp             TCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred             CCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence            556777766432  2 222222334567788999999988 455553  21   2332    233367999999999999


Q ss_pred             CCCCCC
Q psy7674         119 RPTYPD  124 (164)
Q Consensus       119 ~~~~p~  124 (164)
                      +|+...
T Consensus       281 ~p~~~~  286 (474)
T 1zmd_A          281 RPFTKN  286 (474)
T ss_dssp             EECCTT
T ss_pred             CcCCCc
Confidence            987643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=92.58  E-value=0.25  Score=39.75  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=44.9

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC--c--EEEe-CCeeE-EEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK--H--RVKF-AGEER-TVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~--~v~v-~~~~~-~~~~d~liiAtGs~~~~  122 (164)
                      +.+++++.+..  .+.........+.+.+++.||+++.+ .+..++.  .  .+.+ ++  + .+.+|.+++|||.+|+.
T Consensus       189 G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G--~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          189 GSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDG--TRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTC--CEEEEESEEEECSCEEESC
T ss_pred             CCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCC--cEEEEcCEEEECCCCCcCC
Confidence            45667776543  22111122334567788899999988 4555542  2  3444 45  4 79999999999999876


Q ss_pred             C
Q psy7674         123 P  123 (164)
Q Consensus       123 p  123 (164)
                      .
T Consensus       267 ~  267 (463)
T 2r9z_A          267 R  267 (463)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=92.43  E-value=0.2  Score=40.69  Aligned_cols=73  Identities=16%  Similarity=0.260  Sum_probs=44.3

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +..++++.+..  .|.........+.+.+++.||+++.+ .+..++  ...+.+ .+++..+.+|.+++|+|.+|+...
T Consensus       205 g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~  283 (499)
T 1xdi_A          205 GVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSG  283 (499)
T ss_dssp             TCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSS
T ss_pred             CCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCc
Confidence            44566665543  22211222334567788999999987 455553  222333 111257999999999999987643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=92.35  E-value=0.22  Score=39.97  Aligned_cols=84  Identities=25%  Similarity=0.308  Sum_probs=52.1

Q ss_pred             ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEe--C
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKF--A  101 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v--~  101 (164)
                      ..++|++-.+|          +.+++++.+..  .|.........+.+.+++.||+++.+ ++..++  ...  +.+  +
T Consensus       171 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  250 (464)
T 2eq6_A          171 RLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPA  250 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEET
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeec
Confidence            34555654444          45677777643  22222222334567788899999988 455554  222  333  3


Q ss_pred             --CeeEEEEeceEEEecCCCCCCCC
Q psy7674         102 --GEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       102 --~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                        ++...+.+|.+++|+|.+|+.+.
T Consensus       251 ~~g~~~~i~~D~vv~a~G~~p~~~~  275 (464)
T 2eq6_A          251 EGGEGEEVVVDKVLVAVGRKPRTEG  275 (464)
T ss_dssp             TCCSCEEEEESEEEECSCEEESCTT
T ss_pred             CCCceeEEEcCEEEECCCcccCCCC
Confidence              42237999999999999988754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.29  E-value=0.28  Score=39.30  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=46.2

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--Cc--EEEe--CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH--RVKF--AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~--~v~v--~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +.+++++.+..  .|.........+.+.+++.||+++.+ .+..++  ..  .+.+  +++...+.+|.+++|+|.+|+.
T Consensus       194 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          194 GVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred             CCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence            45677777643  22222222334567788899999987 455553  22  2333  3433578999999999999876


Q ss_pred             CC
Q psy7674         123 PD  124 (164)
Q Consensus       123 p~  124 (164)
                      ..
T Consensus       274 ~~  275 (464)
T 2a8x_A          274 EG  275 (464)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=92.28  E-value=0.067  Score=40.41  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             CceEEEeccCCcccccccchhhHHHHhhc
Q psy7674          53 NSVVIFSKSWCPFCTKAKENNYEKELEKN   81 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~   81 (164)
                      -.+.+|+.++||||.+++     .+|++.
T Consensus        44 ~~VelyTs~gCp~C~~Ak-----~lL~~~   67 (270)
T 2axo_A           44 GVVELFTSQGCASCPPAD-----EALRKM   67 (270)
T ss_dssp             CEEEEEECTTCTTCHHHH-----HHHHHH
T ss_pred             cEEEEEeCCCCCChHHHH-----HHHHHh
Confidence            367889999999999999     566555

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=92.25  E-value=0.25  Score=40.38  Aligned_cols=71  Identities=4%  Similarity=0.130  Sum_probs=44.9

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee---Cc-----EEEeCCeeE-EEEeceEEEecCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KH-----RVKFAGEER-TVSAQNFIIAVGGR  119 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~-----~v~v~~~~~-~~~~d~liiAtGs~  119 (164)
                      +..++++.+..  .|.........+.+.+++.||+++.+ .+..++   ..     .+.+++. + .+.+|.+++|+|.+
T Consensus       237 G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G-~~~i~aD~Vv~A~G~~  315 (523)
T 1mo9_A          237 GRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG-EMRIETDFVFLGLGEQ  315 (523)
T ss_dssp             TCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE-EEEEECSCEEECCCCE
T ss_pred             CCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCC-cEEEEcCEEEECcCCc
Confidence            45666766543  22222222345567788999999988 555553   22     2333331 4 79999999999999


Q ss_pred             CCCC
Q psy7674         120 PTYP  123 (164)
Q Consensus       120 ~~~p  123 (164)
                      |+..
T Consensus       316 p~~~  319 (523)
T 1mo9_A          316 PRSA  319 (523)
T ss_dssp             ECCH
T ss_pred             cCCc
Confidence            8764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=92.12  E-value=0.3  Score=39.43  Aligned_cols=81  Identities=12%  Similarity=0.181  Sum_probs=51.3

Q ss_pred             ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC---c---EEEe-
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H---RVKF-  100 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~---~v~v-  100 (164)
                      ..+.|++-.++          +..++++.+..  +|...+.....+.+.+++.||+++.+ .+..++.   .   .+.+ 
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~  266 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMN  266 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEET
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEEC
Confidence            34555655455          45677776543  33222223344567788899999988 4555532   1   3444 


Q ss_pred             CCeeEEEEeceEEEecCCCCCC
Q psy7674         101 AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus       101 ~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +++ ..+.+|.+++|+|.+|+.
T Consensus       267 ~G~-~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          267 DSK-SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             TSC-EEEEESEEEECSCEEECC
T ss_pred             CCc-EEEEcCEEEECCCCCCcc
Confidence            332 478999999999998876

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.12  E-value=0.31  Score=36.82  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=35.3

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeCc----EEEe----CCeeEEEEeceEEEecCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~~----~v~v----~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .+.+.+++.||+++.+ .+..++..    .+.+    +++...+.+|.+++|+|.+|..+
T Consensus       196 ~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  255 (335)
T 2zbw_A          196 ELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLG  255 (335)
T ss_dssp             HHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECG
T ss_pred             HHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCch
Confidence            3455667779999988 45555422    3544    34335789999999999988753

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.12  E-value=0.56  Score=35.88  Aligned_cols=51  Identities=22%  Similarity=0.391  Sum_probs=35.4

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--c---EEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--H---RVKF---AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~---~v~v---~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .+.+.+++.||+++.+ .+..++.  .   .+.+   +++...+.+|.+++|+|.+|...
T Consensus       207 ~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~  266 (360)
T 3ab1_A          207 EVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLG  266 (360)
T ss_dssp             SSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCG
T ss_pred             HHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHH
Confidence            3456677789999988 5555542  2   3444   34335789999999999888653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=92.05  E-value=0.25  Score=38.95  Aligned_cols=69  Identities=16%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             CCceEEEeccCCccc---ccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSWCPFC---TKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKF-AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~---~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v-~~~~~~~~~d~liiAtGs~~~  121 (164)
                      ...++++.+..-+..   .......+.+.+++.||+++.+ .+..+..   +  .+.+ ++  +.+.+|.+|+|+|.+|+
T Consensus       175 g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG--~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          175 GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDG--SVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             TCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSS--CEEECSEEEECSCCEES
T ss_pred             CCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCC--CEEEcCEEEECCCCccC
Confidence            456666665443211   1122334567788899999987 4555532   2  2444 55  67999999999999987


Q ss_pred             C
Q psy7674         122 Y  122 (164)
Q Consensus       122 ~  122 (164)
                      .
T Consensus       253 ~  253 (415)
T 3lxd_A          253 V  253 (415)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.05  E-value=0.2  Score=39.55  Aligned_cols=69  Identities=19%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             CCceEEEeccCCccc---ccccchhhHHHHhhcCceEEee-EEEEeeCc----EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWCPFC---TKAKENNYEKELEKNKIDYFNA-KAVFVDKH----RVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~---~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~----~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      ...++++.+...+..   .......+.+.+++.||+++.+ .+..++..    .+.+ ++  +.+.+|.+++|+|.+|+.
T Consensus       166 g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg--~~i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          166 GLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDG--RSFVADSALICVGAEPAD  243 (410)
T ss_dssp             TCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTS--CEEECSEEEECSCEEECC
T ss_pred             CCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCC--CEEEcCEEEEeeCCeecH
Confidence            445555555432211   1112334567788899999977 45555432    3555 55  689999999999998875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=92.03  E-value=0.55  Score=37.66  Aligned_cols=72  Identities=22%  Similarity=0.344  Sum_probs=44.8

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEe-CCe-eEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKF-AGE-ERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v-~~~-~~~~~~d~liiAtGs~~~~  122 (164)
                      +..++++.+..  .|.........+.+.+++.||+++.+ .+..++  ...  +.+ +++ ...+.+|.+++|+|.+|+.
T Consensus       203 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          203 GAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             TCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             CCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence            44566666543  23222223345567788899999987 455553  222  333 322 2578999999999998876


Q ss_pred             C
Q psy7674         123 P  123 (164)
Q Consensus       123 p  123 (164)
                      .
T Consensus       283 ~  283 (476)
T 3lad_A          283 T  283 (476)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=91.99  E-value=0.046  Score=41.08  Aligned_cols=19  Identities=32%  Similarity=0.235  Sum_probs=17.0

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      .+|+|||||++|+++|..|
T Consensus        40 ~dVvIIGgG~aGl~aA~~l   58 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEI   58 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHH
T ss_pred             cCEEEECccHHHHHHHHHH
Confidence            3699999999999999876

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=91.98  E-value=0.059  Score=33.39  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=26.4

Q ss_pred             cccccCCCCCc-cEEEEecCCCChhHHHHHHHhhcCCCCcceEE-eeceEe
Q psy7674           2 VDIQTAPPDYN-FQVVELDKLPNGAQIQTALFERTGQKTVPNIF-IHGKHI   50 (164)
Q Consensus         2 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~-i~~~~i   50 (164)
                      ++++|++.+.. +..++||.+   +++.+    ..|.+ +|+++ ++|+.+
T Consensus        17 ~~~~L~~~~~~~~~~vdid~~---~~l~~----~~g~~-vPtl~~~~G~~v   59 (87)
T 1ttz_A           17 AVEALAQARAGAFFSVFIDDD---AALES----AYGLR-VPVLRDPMGREL   59 (87)
T ss_dssp             HHHHHHHTTCCCEEEEECTTC---HHHHH----HHTTT-CSEEECTTCCEE
T ss_pred             HHHHHHHHHHhheEEEECCCC---HHHHH----HhCCC-cCeEEEECCEEE
Confidence            56777888876 666666655   33322    23666 99999 777744

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.93  E-value=0.19  Score=39.13  Aligned_cols=80  Identities=18%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             ceEEeeceEec----------CCceEEEeccCCc-ccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEeCCeeEEEE
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSWCP-FCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKFAGEERTVS  108 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~cp-~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v~~~~~~~~  108 (164)
                      ..++|++-.++          +.+++++.+..-+ ...+.....+.+.+++.||+++.+ ++..++...+.+++. + +.
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g-~-i~  222 (367)
T 1xhc_A          145 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSG-F-IE  222 (367)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETTE-E-EE
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECCC-E-EE
Confidence            34556665455          5567777654322 111122334567788899999988 566676556766432 5 99


Q ss_pred             eceEEEecCCCCCC
Q psy7674         109 AQNFIIAVGGRPTY  122 (164)
Q Consensus       109 ~d~liiAtGs~~~~  122 (164)
                      +|.+++|+|.+|+.
T Consensus       223 ~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          223 GKVKICAIGIVPNV  236 (367)
T ss_dssp             CSCEEEECCEEECC
T ss_pred             cCEEEECcCCCcCH
Confidence            99999999998875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=91.83  E-value=0.17  Score=40.82  Aligned_cols=71  Identities=14%  Similarity=0.133  Sum_probs=45.0

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--Cc--EEEe-C-Ce-eEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH--RVKF-A-GE-ERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~--~v~v-~-~~-~~~~~~d~liiAtGs~~~  121 (164)
                      +..++++.+..  +|...+.....+.+.+++.||+++.+ .+..++  ..  .+.+ + +. ++.+.+|.+++|+|.+|+
T Consensus       208 G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~  287 (482)
T 1ojt_A          208 GSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN  287 (482)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred             CCeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence            55677777543  33222223345567788899999988 555553  22  2333 3 00 156889999999999987


Q ss_pred             C
Q psy7674         122 Y  122 (164)
Q Consensus       122 ~  122 (164)
                      .
T Consensus       288 ~  288 (482)
T 1ojt_A          288 G  288 (482)
T ss_dssp             G
T ss_pred             C
Confidence            5

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=91.75  E-value=0.2  Score=39.35  Aligned_cols=69  Identities=14%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             CCceEEEeccCCccc---ccccchhhHHHHhhcCceEEee-EEEEeeC--c---EEEe-CCeeEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSWCPFC---TKAKENNYEKELEKNKIDYFNA-KAVFVDK--H---RVKF-AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~---~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~--~---~v~v-~~~~~~~~~d~liiAtGs~~~  121 (164)
                      ...++++.+...+..   .......+.+.+++.||+++.+ .+..+..  .   .+.+ ++  +.+.+|.+|+|+|.+|+
T Consensus       165 g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG--~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          165 GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDG--NTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             TCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             CCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCC--CEEEcCEEEECcCCccC
Confidence            445666655432211   1122334567788899999987 4555532  2   2444 55  67999999999999887


Q ss_pred             C
Q psy7674         122 Y  122 (164)
Q Consensus       122 ~  122 (164)
                      .
T Consensus       243 ~  243 (404)
T 3fg2_P          243 V  243 (404)
T ss_dssp             C
T ss_pred             H
Confidence            5

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=91.73  E-value=0.44  Score=38.26  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=45.5

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC----cE--EEeC----CeeEEEEeceEEEecCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK----HR--VKFA----GEERTVSAQNFIIAVGG  118 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~----~~--v~v~----~~~~~~~~d~liiAtGs  118 (164)
                      +..++++.+..  .|.........+.+.+++.||+++.+ .+..++.    +.  +.+.    ++...+.+|.+++|+|.
T Consensus       206 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  285 (478)
T 1v59_A          206 GSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR  285 (478)
T ss_dssp             TCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred             CCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC
Confidence            45677776543  22212222334567788899999988 4555532    22  3332    23467999999999999


Q ss_pred             CCCCC
Q psy7674         119 RPTYP  123 (164)
Q Consensus       119 ~~~~p  123 (164)
                      +|+..
T Consensus       286 ~p~~~  290 (478)
T 1v59_A          286 RPYIA  290 (478)
T ss_dssp             EECCT
T ss_pred             CcCCC
Confidence            98865

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=91.51  E-value=0.4  Score=40.62  Aligned_cols=71  Identities=17%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             CCceEEEeccCC--cccc-cccchhhHHHHhhcCceEEee-EEEEeeCcEEEe----CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWC--PFCT-KAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF----AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~c--p~~~-~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v----~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      ...++++.....  +... ......+.+.+++.||+++.+ .+..++...+.+    ++++..+.+|.+|+|+|.+|+.
T Consensus       548 g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~  626 (690)
T 3k30_A          548 GYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPRE  626 (690)
T ss_dssp             TCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECC
T ss_pred             CCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCCh
Confidence            445666654332  2211 222345667888999999988 556676554443    3344679999999999988764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=91.48  E-value=0.38  Score=38.34  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             CCceEEEeccC--Cc-ccccccchhhHHHHhhcCceEEee-EEEEee--CcEEE-e--CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSW--CP-FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHRVK-F--AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~--cp-~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~v~-v--~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +..++++.+..  +| .........+.+.+++.||+++.+ ++..++  ...+. +  ++  ..+.+|.+++|+|.+|+.
T Consensus       172 g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g--~~i~~D~vv~a~G~~p~~  249 (452)
T 2cdu_A          172 NYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDG--KEIKSDIAILCIGFRPNT  249 (452)
T ss_dssp             TCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTS--CEEEESEEEECCCEEECC
T ss_pred             CCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCC--CEEECCEEEECcCCCCCH
Confidence            45677776543  33 222233345667788999999988 455553  23332 2  55  679999999999999875


Q ss_pred             C
Q psy7674         123 P  123 (164)
Q Consensus       123 p  123 (164)
                      .
T Consensus       250 ~  250 (452)
T 2cdu_A          250 E  250 (452)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=91.35  E-value=0.22  Score=36.05  Aligned_cols=53  Identities=23%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             hhHHHHhhc-CceEEeeEEEEee--CcE---EEe-CCeeEEEEeceEEEecCCCCCCCCCCC
Q psy7674          73 NYEKELEKN-KIDYFNAKAVFVD--KHR---VKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  127 (164)
Q Consensus        73 ~~~~~l~~~-gv~~~~~~~~~~~--~~~---v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g  127 (164)
                      .+.+.+++. |++++..+++.+.  ...   +.+ ++  ..+.+|.+|+|||..++....+|
T Consensus        73 ~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g--~~i~a~~VV~A~G~~s~~~~~~G  132 (232)
T 2cul_A           73 RAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFLGARLFLG  132 (232)
T ss_dssp             HHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCSSCEEEET
T ss_pred             HHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCC--CEEECCEEEECCCCChhhceecC
Confidence            345667776 9999866666553  332   333 44  57999999999999765443344

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.29  E-value=0.65  Score=38.03  Aligned_cols=80  Identities=13%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC------------
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK------------   95 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~------------   95 (164)
                      ..+.|++-.++          +..++++.+..  .|.........+.+.+++.||+++.+ .+..+..            
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~  232 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAG  232 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccc
Confidence            35556665454          45677776543  23222222334567788899999987 4444432            


Q ss_pred             ---------cE--EEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          96 ---------HR--VKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        96 ---------~~--v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                               ..  +.. ++  +.+.+|.+++|||.+|+.
T Consensus       233 ~~~~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          233 EDTAHQHIKGHLSLTLSNG--ELLETDLLIMAIGVRPET  269 (565)
T ss_dssp             CCCTTCCTTCEEEEEETTS--CEEEESEEEECSCEEECC
T ss_pred             cccccccCCCcEEEEEcCC--CEEEcCEEEECcCCccch
Confidence                     22  333 44  579999999999998874

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=91.28  E-value=0.021  Score=43.17  Aligned_cols=27  Identities=22%  Similarity=0.543  Sum_probs=21.5

Q ss_pred             hHHHHHHHhhcCCCCc--ceEEeece-Eec
Q psy7674          25 AQIQTALFERTGQKTV--PNIFIHGK-HID   51 (164)
Q Consensus        25 ~~~~~~l~~~~g~~~v--p~v~i~~~-~ig   51 (164)
                      .+.|+++.+..|.++|  |++||||+ |++
T Consensus        98 ~~r~~~~~~~~G~~tVyTPqI~Ing~~~v~  127 (270)
T 2axo_A           98 TERQYGYMRALGRNGVYTPQAILNGRDHVK  127 (270)
T ss_dssp             HHHHHHHHHHTTCSCCCSSEEEETTTEEEE
T ss_pred             hHHHHHHHHHhCCCcccCCEEEECCEEeec
Confidence            4456778777899999  99999997 554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.07  E-value=0.43  Score=38.16  Aligned_cols=73  Identities=19%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeCc----EEEe----CCeeEEEEeceEEEecCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~----~v~v----~~~~~~~~~d~liiAtGs~~  120 (164)
                      +..++++.+..  .|...+.....+.+.+++.||+++.+ ++..++..    .+.+    +++...+.+|.+++|+|.+|
T Consensus       200 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          200 GSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEE
T ss_pred             CCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCc
Confidence            45677776543  33222222344567788899999987 45556421    2333    23235799999999999998


Q ss_pred             CCCC
Q psy7674         121 TYPD  124 (164)
Q Consensus       121 ~~p~  124 (164)
                      +...
T Consensus       280 ~~~~  283 (470)
T 1dxl_A          280 FTSG  283 (470)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            7643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=90.96  E-value=0.59  Score=37.89  Aligned_cols=69  Identities=19%  Similarity=0.277  Sum_probs=43.9

Q ss_pred             CceEEEeccCC--cccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          53 NSVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        53 d~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ..++++.+..-  |.........+.+.+++.||+++.+ .+..++.   .  .+.+ ++  +.+.+|.+++|+|.+|+..
T Consensus       218 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          218 GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG--KTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             CEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEECCG
T ss_pred             CeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCC--cEEEcCEEEECCCCccccc
Confidence            35666665432  2211222334567788899999988 4555532   1  3444 45  5799999999999988764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=90.73  E-value=0.55  Score=37.61  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=44.3

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHH-hhcCceEEee-EEEEeeC--c--EEEe---CCeeEEEEeceEEEecCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKEL-EKNKIDYFNA-KAVFVDK--H--RVKF---AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l-~~~gv~~~~~-~~~~~~~--~--~v~v---~~~~~~~~~d~liiAtGs~~  120 (164)
                      +..++++.+..  .|...+.....+.+.+ ++.||+++.+ ++..++.  .  .+.+   +++...+.+|.+++|+|.+|
T Consensus       197 g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          197 GAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEE
T ss_pred             CCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCccc
Confidence            45666766543  2222222233456778 8899999987 5555542  1  2333   23225789999999999998


Q ss_pred             CCCC
Q psy7674         121 TYPD  124 (164)
Q Consensus       121 ~~p~  124 (164)
                      +...
T Consensus       277 ~~~~  280 (468)
T 2qae_A          277 FTGG  280 (468)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            7643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=90.72  E-value=0.27  Score=40.58  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=42.2

Q ss_pred             cccccc-chhhHHHHhhcCceEE---eeEEEEeeCcEEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          65 FCTKAK-ENNYEKELEKNKIDYF---NAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        65 ~~~~~~-~~~~~~~l~~~gv~~~---~~~~~~~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +|++.. ...|.+.+.+.+|+++   ...+..+.++.+.+ +|  +.+.+|.+|.|||-++..
T Consensus       326 g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~gv~~~dG--~~~~~DvIV~ATGf~~~~  386 (540)
T 3gwf_A          326 FAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDG--VLHELDVLVFATGFDAVD  386 (540)
T ss_dssp             CCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSEEEETTC--CEEECSEEEECCCBSCSS
T ss_pred             CccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCeEEcCCC--CEEECCEEEECCccCccc
Confidence            666653 3345566788899998   56777787777777 66  679999999999988763

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=90.71  E-value=0.093  Score=42.38  Aligned_cols=21  Identities=24%  Similarity=-0.012  Sum_probs=18.4

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..++|+|||||+.|+.+|..|
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L  141 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEEL  141 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            347899999999999999876

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=90.58  E-value=0.48  Score=37.92  Aligned_cols=70  Identities=14%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             CCceEEEeccCCcc-cccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSWCPF-CTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKFAGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~cp~-~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +..++++.+..-+. ..+.....+.+.+++.|++++.+ .+..++  ...  +.+++  ..+.+|.+++|+|.+|+..
T Consensus       199 g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~--~~i~aD~Vv~a~G~~p~~~  274 (467)
T 1zk7_A          199 GSKVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTH--GELRADKLLVATGRTPNTR  274 (467)
T ss_dssp             TCEEEEECSSCTTTTSCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETT--EEEEESEEEECSCEEESCT
T ss_pred             CCEEEEEEECCccCCCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECC--cEEEcCEEEECCCCCcCCC
Confidence            44666666543221 22222334567788899999987 455553  232  33354  5799999999999988753

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=90.50  E-value=0.36  Score=37.60  Aligned_cols=69  Identities=13%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             CCceEEEeccCCc--cc-ccccchhhHHHHhhcCceEEee-EEEEee--Cc--EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          52 NNSVVIFSKSWCP--FC-TKAKENNYEKELEKNKIDYFNA-KAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        52 ~d~vvv~~~~~cp--~~-~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~--~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +..++++.+..-+  .. .......+.+.+++.|++++.+ .+..++  ..  .+.+ ++  +.+.+|.+++|+|.+|+.
T Consensus       168 g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          168 GYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDG--EVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             TCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEECC
T ss_pred             CCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEECcCCCcCH
Confidence            4566666654322  11 1122344567788899999987 455553  22  2334 44  679999999999998875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=90.49  E-value=0.56  Score=37.84  Aligned_cols=73  Identities=22%  Similarity=0.221  Sum_probs=44.3

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEeC----CeeEEEEeceEEEecCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKFA----GEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v~----~~~~~~~~d~liiAtGs~~  120 (164)
                      +.+++++.+..  .+.........+.+.+++.||+++.+ .+..+.  ...  +.+.    ++...+.+|.+++|||-+|
T Consensus       221 g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p  300 (491)
T 3urh_A          221 GAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP  300 (491)
T ss_dssp             TCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEE
T ss_pred             CCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCcc
Confidence            44566665433  22212222334567788899999987 444443  222  3332    3335799999999999988


Q ss_pred             CCCC
Q psy7674         121 TYPD  124 (164)
Q Consensus       121 ~~p~  124 (164)
                      +...
T Consensus       301 ~~~~  304 (491)
T 3urh_A          301 STDG  304 (491)
T ss_dssp             CCTT
T ss_pred             CCCc
Confidence            7643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=90.22  E-value=0.69  Score=37.42  Aligned_cols=69  Identities=17%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             CceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC---c--EEEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          53 NSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK---H--RVKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        53 d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ..++++.+..  .|.........+.+.+++.||+++.+ .+..++.   .  .+.+ ++  +.+.+|.+++|+|.+|+..
T Consensus       214 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~i~~D~vv~a~G~~p~~~  291 (490)
T 1fec_A          214 GQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLAIGRVPRSQ  291 (490)
T ss_dssp             CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEESCT
T ss_pred             CeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCC--cEEEcCEEEEccCCCcCcc
Confidence            3566666543  22211222334567788899999988 4555532   1  3444 44  5799999999999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=90.18  E-value=0.77  Score=36.58  Aligned_cols=52  Identities=15%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             hhhHHHHhhcCceEEee-EEEEee--CcEE--EeCCeeEEEEeceEEEecCCCCCCCCC
Q psy7674          72 NNYEKELEKNKIDYFNA-KAVFVD--KHRV--KFAGEERTVSAQNFIIAVGGRPTYPDI  125 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~-~~~~~~--~~~v--~v~~~~~~~~~d~liiAtGs~~~~p~i  125 (164)
                      ..+.+.+++.||+++.+ .+..++  ...+  ..++  ..+.+|.+++|||.+|+....
T Consensus       193 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~--g~i~aD~Vv~A~G~~p~~~~l  249 (452)
T 3oc4_A          193 AEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSE--QEISCDSGIFALNLHPQLAYL  249 (452)
T ss_dssp             HHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESS--CEEEESEEEECSCCBCCCSSC
T ss_pred             HHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECC--CEEEeCEEEECcCCCCChHHH
Confidence            34567788899999987 455553  3333  3344  379999999999999876543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=89.80  E-value=0.14  Score=36.88  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=20.6

Q ss_pred             CceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      ..+++|+.+|||||+..... +.++ .+.+++++
T Consensus        88 ~~vv~F~d~~Cp~C~~~~~~-l~~l-~~~~v~v~  119 (216)
T 1eej_A           88 HVITVFTDITCGYCHKLHEQ-MADY-NALGITVR  119 (216)
T ss_dssp             EEEEEEECTTCHHHHHHHTT-HHHH-HHTTEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHH-HHHH-HhCCcEEE
Confidence            35777999999999986532 2232 23366653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=89.75  E-value=0.59  Score=39.41  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=37.1

Q ss_pred             hHHHHhhcCceEEee-EEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +.+.+++.||+++.+ .+..++...+.+  +++...+.+|.+++|+|.+|+.
T Consensus       579 ~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~  630 (671)
T 1ps9_A          579 HRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNR  630 (671)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECC
T ss_pred             HHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccH
Confidence            456788899999988 455666555555  5544579999999999988864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=89.70  E-value=0.6  Score=38.06  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             hhhHHHHhhcCceEEee-EEEEeeCcEEEe-----CCe--eEEEEeceEEEecCCCCC
Q psy7674          72 NNYEKELEKNKIDYFNA-KAVFVDKHRVKF-----AGE--ERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-----~~~--~~~~~~d~liiAtGs~~~  121 (164)
                      ....+.|++.||+++.+ .+..+++..+.+     ++.  ++.+.+|.+|.|+|-+|+
T Consensus       276 ~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          276 SYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             HHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence            34567889999999988 456677665544     221  246999999999998765

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=89.40  E-value=1  Score=36.22  Aligned_cols=73  Identities=12%  Similarity=0.212  Sum_probs=44.1

Q ss_pred             CCceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEee---Cc--EEEe-C---CeeEEEEeceEEEecCCCC
Q psy7674          52 NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KH--RVKF-A---GEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        52 ~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~--~v~v-~---~~~~~~~~d~liiAtGs~~  120 (164)
                      +..++++.+.. .|.........+.+.+++.||+++.+ .+..+.   ..  .+.+ +   ++...+.+|.+++|+|-+|
T Consensus       208 g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          208 GLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             TCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred             CCceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence            55677776542 22222222334567788999999987 444442   22  2333 2   4223578999999999888


Q ss_pred             CCCC
Q psy7674         121 TYPD  124 (164)
Q Consensus       121 ~~p~  124 (164)
                      +...
T Consensus       288 ~~~~  291 (488)
T 3dgz_A          288 ETRT  291 (488)
T ss_dssp             SCGG
T ss_pred             ccCc
Confidence            7643

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=89.15  E-value=0.89  Score=32.30  Aligned_cols=16  Identities=31%  Similarity=0.945  Sum_probs=13.7

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|..+|||+|+...
T Consensus       138 ~v~F~a~wC~~C~~~~  153 (226)
T 1a8l_A          138 ILVFVTPTCPYCPLAV  153 (226)
T ss_dssp             EEEEECSSCTTHHHHH
T ss_pred             EEEEeCCCCCccHHHH
Confidence            5669999999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=89.01  E-value=0.49  Score=38.13  Aligned_cols=50  Identities=18%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeC--c--EEEe-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDK--H--RVKF-AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~--~--~v~v-~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      .+.+.+++.|++++.+ .+..++.  .  .+.+ ++  +.+.+|.+++|+|.+|....
T Consensus       237 ~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~aD~Vi~A~G~~p~~~~  292 (484)
T 3o0h_A          237 LLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNG--QTICADRVMLATGRVPNTTG  292 (484)
T ss_dssp             HHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTS--CEEEESEEEECCCEEECCTT
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCC--cEEEcCEEEEeeCCCcCCCC
Confidence            3556778889999986 4555532  2  3444 44  57999999999999887653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=88.95  E-value=0.074  Score=34.42  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=23.5

Q ss_pred             CCCccEEEEecCCCChhHHHHHHHhhcCCCCcceE--EeeceEe
Q psy7674           9 PDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNI--FIHGKHI   50 (164)
Q Consensus         9 ~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v--~i~~~~i   50 (164)
                      .+++|..++||.+   .++    .+..|.+ +|++  |++|+.+
T Consensus        57 ~~i~~~~vDId~d---~~l----~~~ygv~-VP~l~~~~dG~~v   92 (107)
T 2fgx_A           57 SWFELEVINIDGN---EHL----TRLYNDR-VPVLFAVNEDKEL   92 (107)
T ss_dssp             SCCCCEEEETTTC---HHH----HHHSTTS-CSEEEETTTTEEE
T ss_pred             cCCeEEEEECCCC---HHH----HHHhCCC-CceEEEEECCEEE
Confidence            6788888888866   232    2233655 9999  8899844

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=88.95  E-value=0.33  Score=33.80  Aligned_cols=33  Identities=9%  Similarity=0.153  Sum_probs=22.1

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        49 vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi   83 (187)
T 3dwv_A           49 LLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVL   83 (187)
T ss_dssp             EEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEE
T ss_pred             EEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEE
Confidence            344588999999998642  234455566677775

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=88.63  E-value=0.19  Score=31.78  Aligned_cols=17  Identities=35%  Similarity=0.993  Sum_probs=14.3

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        22 ~vv~f~a~wC~~C~~~~   38 (110)
T 2l6c_A           22 AIVFFHKNLCPHCKNME   38 (110)
T ss_dssp             EEEEEECSSCSTHHHHH
T ss_pred             EEEEEECCCCHhHHHHH
Confidence            36679999999999876

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=88.62  E-value=0.13  Score=32.80  Aligned_cols=17  Identities=24%  Similarity=0.763  Sum_probs=14.3

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|.++|||+|+...
T Consensus        32 ~~v~f~a~wC~~C~~~~   48 (118)
T 1zma_A           32 ATFFIGRKTCPYCRKFA   48 (118)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCccHHHHH
Confidence            46779999999999865

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=88.48  E-value=0.13  Score=32.81  Aligned_cols=17  Identities=29%  Similarity=0.999  Sum_probs=14.7

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        15 ~vV~F~A~WC~~C~~~~   31 (106)
T 3kp8_A           15 GGTMYGAYWCPHCQDQK   31 (106)
T ss_dssp             TCEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            36889999999999876

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=88.25  E-value=1.3  Score=36.51  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=43.7

Q ss_pred             CCccccccc-chhhHHHHhhcCceEE---eeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC
Q psy7674          62 WCPFCTKAK-ENNYEKELEKNKIDYF---NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        62 ~cp~~~~~~-~~~~~~~l~~~gv~~~---~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~  121 (164)
                      +-+.|++.. ...|.+.|.+.+|+++   ...+..+.++.+.+.+ + .+.+|.+|.|||-++.
T Consensus       331 ~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~gv~~~d-G-~~~~D~IV~ATGf~~~  392 (545)
T 3uox_A          331 HPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEGIKTAD-A-AYDLDVIIYATGFDAV  392 (545)
T ss_dssp             SCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTEEEESS-C-EEECSEEEECCCCBSS
T ss_pred             CCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCeEEeCC-C-eeecCEEEECCccccc
Confidence            445777754 4456777888899998   4677778877777744 2 7899999999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=88.25  E-value=0.17  Score=43.22  Aligned_cols=20  Identities=35%  Similarity=0.295  Sum_probs=17.9

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++|+|||||+.|+++|..|
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L  408 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVL  408 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHH
Confidence            46899999999999999876

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=88.14  E-value=0.66  Score=37.12  Aligned_cols=50  Identities=16%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             hhhHHHHhhcCceEEee-EEEEeeC---c--EEE-e-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          72 NNYEKELEKNKIDYFNA-KAVFVDK---H--RVK-F-AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~-~~~~~~~---~--~v~-v-~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ..+.+.+++.|++++.+ .+..++.   .  .+. + ++  + +.+|.+++|+|.+|+...
T Consensus       215 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g--~-i~aD~Vv~a~G~~p~~~~  272 (463)
T 4dna_A          215 RGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHG--E-IVADQVMLALGRMPNTNG  272 (463)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSC--E-EEESEEEECSCEEESCTT
T ss_pred             HHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCC--e-EEeCEEEEeeCcccCCCC
Confidence            34556788899999987 4555532   2  455 5 34  4 999999999999887653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=88.00  E-value=0.16  Score=38.72  Aligned_cols=19  Identities=32%  Similarity=0.331  Sum_probs=16.9

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ..|+|||||+.|+-+|..|
T Consensus        66 ~DV~IIGaGPAGlsAA~~l   84 (326)
T 3fpz_A           66 SDVIIVGAGSSGLSAAYVI   84 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHH
Confidence            4799999999999999765

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=87.88  E-value=0.66  Score=38.29  Aligned_cols=58  Identities=10%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             CCccccccc-chhhHHHHhhcCceEE---eeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC
Q psy7674          62 WCPFCTKAK-ENNYEKELEKNKIDYF---NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        62 ~cp~~~~~~-~~~~~~~l~~~gv~~~---~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~  121 (164)
                      |.+.|++.. ...|.+.+.+.+|+++   ...+..+.++.+.+++ + .+.+|.+|.|||-++.
T Consensus       336 ~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~gv~~~d-G-~~~~D~iI~ATGf~~~  397 (549)
T 4ap3_A          336 HAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETGIVTTG-A-HYDLDMIVLATGFDAM  397 (549)
T ss_dssp             CCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTEEEESS-C-EEECSEEEECCCEEES
T ss_pred             CCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCcEEeCC-C-ceecCEEEECCccccc
Confidence            556777754 3455667788899998   6777778777777744 2 7899999999998765

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=87.81  E-value=1.4  Score=35.32  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             CCceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEee---Cc--EEEe-CC---eeEEEEeceEEEecCCCC
Q psy7674          52 NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KH--RVKF-AG---EERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        52 ~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~--~v~v-~~---~~~~~~~d~liiAtGs~~  120 (164)
                      +.+++++.++. .+.........+.+.+++.||+++.+ .+..+.   ..  .+.+ ++   ....+.+|.+++|+|.+|
T Consensus       210 g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          210 GYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             TCEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             CCEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence            55677776542 22222222344567788999999987 444453   22  2333 22   234789999999999888


Q ss_pred             CCC
Q psy7674         121 TYP  123 (164)
Q Consensus       121 ~~p  123 (164)
                      +..
T Consensus       290 ~~~  292 (483)
T 3dgh_A          290 LVD  292 (483)
T ss_dssp             CCG
T ss_pred             CcC
Confidence            754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=87.79  E-value=0.7  Score=39.04  Aligned_cols=54  Identities=13%  Similarity=0.115  Sum_probs=37.9

Q ss_pred             hhHHHHhh-cCceEEeeEEEEe--eCcE---EEe-CCeeEEEEeceEEEecCCCCCCCCCCCc
Q psy7674          73 NYEKELEK-NKIDYFNAKAVFV--DKHR---VKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA  128 (164)
Q Consensus        73 ~~~~~l~~-~gv~~~~~~~~~~--~~~~---v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~  128 (164)
                      .+.+.+++ .|++++.++++.+  +...   +.+ ++  ..+.+|.+|+|||+.++.+.++|.
T Consensus       128 ~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG--~~i~AdaVVLATG~~s~~~~~~G~  188 (637)
T 2zxi_A          128 YMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLG--VEYKTKAVVVTTGTFLNGVIYIGD  188 (637)
T ss_dssp             HHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTS--CEEECSEEEECCTTCBTCEEEETT
T ss_pred             HHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCC--cEEEeCEEEEccCCCccCceeccc
Confidence            34556666 5999987777765  3333   333 44  679999999999998877666653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=87.75  E-value=0.52  Score=34.99  Aligned_cols=49  Identities=22%  Similarity=0.205  Sum_probs=33.3

Q ss_pred             HHHHhhcCceEEee-EEEEeeCc-----EEEe---CCeeEEEEeceEEEecCCCCCCC
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDKH-----RVKF---AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~~-----~v~v---~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .+.+++.||+++.+ .+..++..     .+.+   +++...+.+|.+++|+|.+|...
T Consensus       190 ~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~  247 (315)
T 3r9u_A          190 EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNE  247 (315)
T ss_dssp             HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCG
T ss_pred             HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCch
Confidence            45567789999976 45555321     2444   44334799999999999988754

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=87.72  E-value=0.25  Score=35.49  Aligned_cols=32  Identities=16%  Similarity=0.348  Sum_probs=20.9

Q ss_pred             CceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          53 NSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      ..+++|+..|||||+..... +.+ +.+.++++.
T Consensus        88 ~~vv~F~d~~Cp~C~~~~~~-l~~-~~~~~v~v~  119 (211)
T 1t3b_A           88 HVVTVFMDITCHYCHLLHQQ-LKE-YNDLGITVR  119 (211)
T ss_dssp             EEEEEEECTTCHHHHHHHTT-HHH-HHHTTEEEE
T ss_pred             EEEEEEECCCCHhHHHHHHH-HHH-HHhCCcEEE
Confidence            35777999999999986532 223 333466653

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=87.60  E-value=0.38  Score=31.45  Aligned_cols=33  Identities=15%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+...++.++
T Consensus        34 vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v   68 (148)
T 3hcz_A           34 TILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVY   68 (148)
T ss_dssp             EEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEE
Confidence            345588999999987652  223444555566664

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=87.58  E-value=0.36  Score=32.55  Aligned_cols=33  Identities=9%  Similarity=0.157  Sum_probs=20.4

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        34 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv   68 (169)
T 2v1m_A           34 CLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRIL   68 (169)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEE
Confidence            344577899999987642  123344455567664

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=87.55  E-value=0.34  Score=30.46  Aligned_cols=17  Identities=29%  Similarity=0.766  Sum_probs=14.3

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        27 ~lv~f~~~~C~~C~~~~   43 (120)
T 1mek_A           27 LLVEFYAPWCGHCKALA   43 (120)
T ss_dssp             EEEEEECSSCSTTSTTH
T ss_pred             EEEEEECCCCHHHHHhh
Confidence            36778999999999876

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=87.54  E-value=0.89  Score=33.75  Aligned_cols=47  Identities=15%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             HHHhhcCceEEeeE-EEEeeCc----EEEe-C---CeeEEEEeceEEEecCCCCCC
Q psy7674          76 KELEKNKIDYFNAK-AVFVDKH----RVKF-A---GEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        76 ~~l~~~gv~~~~~~-~~~~~~~----~v~v-~---~~~~~~~~d~liiAtGs~~~~  122 (164)
                      +.+++.||+++.+. +..++..    .+.+ +   ++...+.+|.+++|+|.+|..
T Consensus       198 ~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  253 (323)
T 3f8d_A          198 TVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPT  253 (323)
T ss_dssp             HHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCH
T ss_pred             HHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCCh
Confidence            34444599999884 5555422    2444 3   533479999999999998873

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=87.53  E-value=1.2  Score=35.65  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=44.0

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee---Cc-E--EEe-C---Ce--eEEEEeceEEEec
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KH-R--VKF-A---GE--ERTVSAQNFIIAV  116 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~-~--v~v-~---~~--~~~~~~d~liiAt  116 (164)
                      +.+++++.+..  .|.........+.+.+++.||+++.+ .+..++   .. .  +.+ +   +.  +..+.+|.+++|+
T Consensus       210 g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~  289 (478)
T 3dk9_A          210 GSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI  289 (478)
T ss_dssp             TCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred             CCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEee
Confidence            45566666533  22222222334567788999999987 445553   12 2  333 2   11  1578999999999


Q ss_pred             CCCCCCC
Q psy7674         117 GGRPTYP  123 (164)
Q Consensus       117 Gs~~~~p  123 (164)
                      |-+|+..
T Consensus       290 G~~p~~~  296 (478)
T 3dk9_A          290 GRVPNTK  296 (478)
T ss_dssp             CEEESCT
T ss_pred             ccccCCC
Confidence            9988765

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=87.45  E-value=0.33  Score=32.28  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|......  .+.+.+.+.++.++
T Consensus        32 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv   66 (152)
T 2lrn_A           32 VLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIY   66 (152)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEE
Confidence            3555889999999876421  22333444456653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=87.44  E-value=1.4  Score=35.70  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEe---CCeeEEEEeceEEEecCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKF---AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v---~~~~~~~~~d~liiAtGs~~~  121 (164)
                      +.+++++.+..  .|.........+.+.+++. |+++.+ .+..+.  ...  +.+   +++...+.+|.+++|+|.+|+
T Consensus       197 g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          197 GVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             TCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             CCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence            45667766543  2222222233455667766 999877 444453  222  333   233357999999999999987


Q ss_pred             CCC
Q psy7674         122 YPD  124 (164)
Q Consensus       122 ~p~  124 (164)
                      ...
T Consensus       276 ~~~  278 (492)
T 3ic9_A          276 VDK  278 (492)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=87.44  E-value=0.16  Score=35.35  Aligned_cols=17  Identities=24%  Similarity=0.788  Sum_probs=14.3

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        57 vvv~F~A~WC~pC~~~~   73 (167)
T 1z6n_A           57 RLLVAGEMWCPDCQINL   73 (167)
T ss_dssp             EEEEECCTTCHHHHHHH
T ss_pred             EEEEEECCCChhHHHHH
Confidence            45669999999999875

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=87.37  E-value=0.28  Score=32.10  Aligned_cols=33  Identities=15%  Similarity=0.419  Sum_probs=22.0

Q ss_pred             ceEEEeccCCcccccccc-----hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE-----NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~-----~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....     ..+.+.+++.++.++
T Consensus        30 vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v   67 (142)
T 3ewl_A           30 TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVL   67 (142)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEE
T ss_pred             EEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEE
Confidence            345588999999998731     124455666677764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=87.20  E-value=0.72  Score=36.96  Aligned_cols=68  Identities=24%  Similarity=0.314  Sum_probs=42.9

Q ss_pred             CceEEEeccC--Cc-ccccccchhhHHHHhhcCceEEee-EEEEee--CcE--EEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          53 NSVVIFSKSW--CP-FCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KHR--VKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        53 d~vvv~~~~~--cp-~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      ..++++.+..  .| ...+.....+.+.+++.||+++.+ .+..++  ...  +.+ ++  +.+.+|.+++|||.+|+.
T Consensus       184 ~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g--~~i~aD~Vv~a~G~~p~~  260 (472)
T 3iwa_A          184 IDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDK--RTLDADLVILAAGVSPNT  260 (472)
T ss_dssp             CEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESS--CEEECSEEEECSCEEECC
T ss_pred             CcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCC--CEEEcCEEEECCCCCcCH
Confidence            3455555432  22 222222344567788899999987 555553  233  333 55  579999999999998864

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=86.87  E-value=0.41  Score=33.26  Aligned_cols=33  Identities=6%  Similarity=-0.080  Sum_probs=20.7

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        52 vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv   86 (185)
T 2gs3_A           52 CIVTNVASQGGKTEVNYTQLVDLHARYAECGLRIL   86 (185)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEE
Confidence            345588899999987642  123344555567764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=86.80  E-value=1  Score=36.46  Aligned_cols=49  Identities=18%  Similarity=0.308  Sum_probs=35.8

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--CcE--EEe-CCeeEEEEeceEEEecCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--KHR--VKF-AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v-~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .+.+.+++.||+++.+ .+..++  ...  +.+ ++  +.+.+|.+++|+|.+|+..
T Consensus       231 ~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG--~~i~aD~Vv~a~G~~pn~~  285 (493)
T 1m6i_A          231 WTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVGLEPNVE  285 (493)
T ss_dssp             HHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCCEEECCT
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCC--CEEECCEEEECCCCCccHH
Confidence            4556788899999988 455553  233  334 45  6799999999999998753

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=86.76  E-value=0.21  Score=41.45  Aligned_cols=20  Identities=10%  Similarity=0.029  Sum_probs=17.8

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+|+|||||..|+.+|..|
T Consensus       107 ~~DVVIVGgGpaGL~aA~~L  126 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVL  126 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHH
Confidence            36899999999999999876

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=86.65  E-value=0.37  Score=33.24  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=20.3

Q ss_pred             eEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      ++.|-.+|||+|.....  ..+.+.++..++.++
T Consensus        42 lv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi   75 (180)
T 3kij_A           42 LVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL   75 (180)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             EEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEE
Confidence            44488899999998642  223344555566664

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=86.61  E-value=1.1  Score=33.50  Aligned_cols=49  Identities=24%  Similarity=0.383  Sum_probs=32.5

Q ss_pred             HHHHhhc-CceEEee-EEEEeeCc-----EEEe-C---CeeEEEEeceEEEecCCCCCCC
Q psy7674          75 EKELEKN-KIDYFNA-KAVFVDKH-----RVKF-A---GEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        75 ~~~l~~~-gv~~~~~-~~~~~~~~-----~v~v-~---~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .+.+.+. ||+++.+ .+..++..     .+.+ +   ++...+.+|.+++|+|.+|...
T Consensus       215 ~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  274 (338)
T 3itj_A          215 QKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATK  274 (338)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCG
T ss_pred             HHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChh
Confidence            3445554 9999987 45555321     1444 2   3346799999999999988654

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=86.45  E-value=0.44  Score=32.94  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        52 vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv   86 (181)
T 2p31_A           52 SLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL   86 (181)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEE
Confidence            344488899999997642  123344455567664

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=86.43  E-value=0.83  Score=34.57  Aligned_cols=50  Identities=22%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             HHHhhcCceEEee-EEEEeeCc----EEEe----CCeeEEEEeceEEEecCCCCCCCCC
Q psy7674          76 KELEKNKIDYFNA-KAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGRPTYPDI  125 (164)
Q Consensus        76 ~~l~~~gv~~~~~-~~~~~~~~----~v~v----~~~~~~~~~d~liiAtGs~~~~p~i  125 (164)
                      +++++.||+++.+ .+..++..    .+.+    +++...+.+|.+++|+|.+|....+
T Consensus       199 ~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~  257 (335)
T 2a87_A          199 RARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV  257 (335)
T ss_dssp             HHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTT
T ss_pred             HHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHh
Confidence            4456789999987 45555432    2444    2333578999999999998876433

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=86.42  E-value=0.41  Score=31.62  Aligned_cols=33  Identities=15%  Similarity=0.331  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|......  .+.+.+.+.++.++
T Consensus        31 vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v   65 (152)
T 3gl3_A           31 VYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVV   65 (152)
T ss_dssp             EEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEE
Confidence            3455889999999875422  33344555566664

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=86.41  E-value=0.47  Score=31.33  Aligned_cols=17  Identities=18%  Similarity=0.446  Sum_probs=13.3

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        33 ~lv~f~~~~C~~C~~~~   49 (152)
T 2lja_A           33 IYIDVWATWCGPCRGEL   49 (152)
T ss_dssp             EEEEECCSSCCGGGGTH
T ss_pred             EEEEEECCcCHhHHHHh
Confidence            35558899999998764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=86.32  E-value=0.35  Score=32.01  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=20.6

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|......  .+.+.+...++.++
T Consensus        29 vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv   63 (151)
T 2f9s_A           29 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIV   63 (151)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEE
Confidence            4555889999999976522  23334444466664

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=86.13  E-value=1.2  Score=33.22  Aligned_cols=49  Identities=8%  Similarity=0.175  Sum_probs=33.9

Q ss_pred             HHHhhcCceEEee-EEEEeeCc----EEEe-C---CeeEEEEeceEEEecCCCCCCCC
Q psy7674          76 KELEKNKIDYFNA-KAVFVDKH----RVKF-A---GEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        76 ~~l~~~gv~~~~~-~~~~~~~~----~v~v-~---~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +.+++.||+++.+ .+..++..    .+.+ +   ++...+.+|.+++|+|.+|..+.
T Consensus       197 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~  254 (332)
T 3lzw_A          197 ENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGP  254 (332)
T ss_dssp             HHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGG
T ss_pred             HHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchH
Confidence            4578889999986 45555432    2444 2   22367999999999999886543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=86.03  E-value=1  Score=38.02  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             hHHHHhhc-CceEEeeEEEEe--eCcEEE---e-CCeeEEEEeceEEEecCCCCCCCCCCC
Q psy7674          74 YEKELEKN-KIDYFNAKAVFV--DKHRVK---F-AGEERTVSAQNFIIAVGGRPTYPDIPG  127 (164)
Q Consensus        74 ~~~~l~~~-gv~~~~~~~~~~--~~~~v~---v-~~~~~~~~~d~liiAtGs~~~~p~i~g  127 (164)
                      +.+.+++. |++++.++++.+  +...+.   + ++  ..+.+|.+|+|||+.++.+..+|
T Consensus       123 L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G--~~i~Ad~VVLATG~~s~~~i~~G  181 (641)
T 3cp8_A          123 MRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSG--RAIQAKAAILACGTFLNGLIHIG  181 (641)
T ss_dssp             HHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CEEEEEEEEECCTTCBTCEEEET
T ss_pred             HHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCC--cEEEeCEEEECcCCCCCccceee
Confidence            44566664 999988777664  344433   3 44  57999999999999876544433

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=85.98  E-value=0.47  Score=30.53  Aligned_cols=17  Identities=29%  Similarity=0.811  Sum_probs=14.4

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        38 ~lv~f~a~wC~~C~~~~   54 (130)
T 2dml_A           38 WLVEFYAPWCGHCQRLT   54 (130)
T ss_dssp             EEEEEECTTCSTTGGGH
T ss_pred             EEEEEECCCCHHHHhhC
Confidence            46779999999999876

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=85.97  E-value=0.5  Score=32.93  Aligned_cols=33  Identities=9%  Similarity=0.153  Sum_probs=21.3

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        51 vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv   85 (190)
T 2vup_A           51 LLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVL   85 (190)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred             EEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEE
Confidence            455588899999987542  233344555677764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=85.97  E-value=0.89  Score=36.07  Aligned_cols=69  Identities=16%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             CCceEEEeccCCcc---cccccchhhHHHHhhcCceEEee-EEEEeeC----c---EEEe-CCeeEEEEeceEEEecCCC
Q psy7674          52 NNSVVIFSKSWCPF---CTKAKENNYEKELEKNKIDYFNA-KAVFVDK----H---RVKF-AGEERTVSAQNFIIAVGGR  119 (164)
Q Consensus        52 ~d~vvv~~~~~cp~---~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~----~---~v~v-~~~~~~~~~d~liiAtGs~  119 (164)
                      +..++++.+..-+.   ........+.+.+++.||+++.+ .+..++.    .   .+.+ ++  +.+.+|.+++|+|.+
T Consensus       172 G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G--~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          172 NMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG--TRLPADLVIAGIGLI  249 (431)
T ss_dssp             TCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS--CEEECSEEEECCCEE
T ss_pred             CCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCC--CEEEcCEEEECCCCC
Confidence            44666666543221   11222334567788899999988 4555532    2   2444 45  679999999999988


Q ss_pred             CCC
Q psy7674         120 PTY  122 (164)
Q Consensus       120 ~~~  122 (164)
                      |+.
T Consensus       250 p~~  252 (431)
T 1q1r_A          250 PNC  252 (431)
T ss_dssp             ECC
T ss_pred             cCc
Confidence            864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=85.91  E-value=0.92  Score=34.10  Aligned_cols=49  Identities=20%  Similarity=0.270  Sum_probs=33.1

Q ss_pred             HHHhhcCceEEee-EEEEee--C---c--EEEe----CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          76 KELEKNKIDYFNA-KAVFVD--K---H--RVKF----AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        76 ~~l~~~gv~~~~~-~~~~~~--~---~--~v~v----~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +.+++.||+++.+ .+..++  .   +  .+.+    +++...+.+|.+++|+|.+|....
T Consensus       203 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~  263 (333)
T 1vdc_A          203 RALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKF  263 (333)
T ss_dssp             HHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG
T ss_pred             HHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHH
Confidence            4456789999876 445553  2   1  1444    233357899999999999887643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=85.80  E-value=1.4  Score=34.89  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=35.8

Q ss_pred             hhhHHHHhhcCceEEee-EEEEeeCcEEEe-C----Ce---eEEEEeceEEEecCCCCC
Q psy7674          72 NNYEKELEKNKIDYFNA-KAVFVDKHRVKF-A----GE---ERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        72 ~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v-~----~~---~~~~~~d~liiAtGs~~~  121 (164)
                      ..+.+.+++.||+++.+ .+..++...+.+ +    +.   ...+.+|.+++++|.++.
T Consensus       212 ~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~  270 (437)
T 3sx6_A          212 GILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGV  270 (437)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECC
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCc
Confidence            34567788999999987 456677665554 1    11   367999999999986553

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=85.73  E-value=2  Score=34.11  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             hHHHHhhcCceEEee-EEEEe--eCcEEEe--CCeeEEEEeceEEEecCCCC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFV--DKHRVKF--AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~--~~~~v~v--~~~~~~~~~d~liiAtGs~~  120 (164)
                      +.+.+++.|++++.+ +++.+  +...+.+  ++  ..+.+|++|+|||+.+
T Consensus       138 L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~--g~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          138 LMAEMKEAGVQLRLETSIGEVERTASGFRVTTSA--GTVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEEETTEEEEEETT--EEEEESEEEECCCCSS
T ss_pred             HHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECC--cEEEeeEEEECCCCcc
Confidence            455667789999887 45555  3333444  33  3799999999999876

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=85.72  E-value=0.91  Score=36.54  Aligned_cols=70  Identities=17%  Similarity=0.209  Sum_probs=43.2

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeC-cE---EEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDK-HR---VKFAGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~-~~---v~v~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+++++.+..  .+.........+.+.+++.||+++.+ .+..++. ..   +..++  ..+.+|.+++|+|.+|+.+
T Consensus       209 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~--~~i~~D~vi~a~G~~p~~~  285 (480)
T 3cgb_A          209 GKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDK--GTYKADLVLVSVGVKPNTD  285 (480)
T ss_dssp             TCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETT--EEEECSEEEECSCEEESCG
T ss_pred             CCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECC--CEEEcCEEEECcCCCcChH
Confidence            44566666532  22111222234567788899999987 4555532 22   23354  5799999999999988754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=85.66  E-value=0.25  Score=38.88  Aligned_cols=19  Identities=21%  Similarity=0.329  Sum_probs=17.1

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      .+|+|||||.+|+-+|..|
T Consensus        37 ~dVvIIGaGi~Gls~A~~L   55 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYL   55 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHH
Confidence            5799999999999999876

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=85.55  E-value=0.53  Score=31.69  Aligned_cols=33  Identities=9%  Similarity=0.220  Sum_probs=20.4

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        35 vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv   69 (170)
T 2p5q_A           35 LLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEIL   69 (170)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEE
Confidence            344577899999987542  223344555567664

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=85.55  E-value=1.2  Score=33.32  Aligned_cols=45  Identities=18%  Similarity=0.305  Sum_probs=30.5

Q ss_pred             hhcCceEEee-EEEEeeCc----EEEe----CCeeEEEEeceEEEecCCCCCCC
Q psy7674          79 EKNKIDYFNA-KAVFVDKH----RVKF----AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        79 ~~~gv~~~~~-~~~~~~~~----~v~v----~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ++.||+++.+ .+..++..    .+.+    +++...+.+|.+++|||.+|+..
T Consensus       199 ~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  252 (325)
T 2q7v_A          199 ANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTA  252 (325)
T ss_dssp             TCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred             hcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChH
Confidence            4469999887 45555322    3444    34334789999999999888753

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=85.48  E-value=3.8  Score=33.27  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=48.3

Q ss_pred             eEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEeeE-EEEe---eC---cE--EEe-
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNAK-AVFV---DK---HR--VKF-  100 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~---~~---~~--v~v-  100 (164)
                      .++|++-.++          ...++++.+.. .+.........+.+.+++.||+++.+. +..+   +.   ..  +.+ 
T Consensus       213 vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~  292 (519)
T 3qfa_A          213 TLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQ  292 (519)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEE
Confidence            4556664454          55677776642 222222223345677889999999873 2333   21   22  222 


Q ss_pred             --CCee-EEEEeceEEEecCCCCCCCC
Q psy7674         101 --AGEE-RTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus       101 --~~~~-~~~~~d~liiAtGs~~~~p~  124 (164)
                        ++.. ..+.+|.+++|+|-+|+...
T Consensus       293 ~~~g~~~~~~~~D~vi~a~G~~p~~~~  319 (519)
T 3qfa_A          293 STNSEEIIEGEYNTVMLAIGRDACTRK  319 (519)
T ss_dssp             ESSSSCEEEEEESEEEECSCEEESCSS
T ss_pred             ECCCcEEEEEECCEEEEecCCcccCCC
Confidence              2311 35789999999999887643

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=85.32  E-value=0.42  Score=31.99  Aligned_cols=33  Identities=3%  Similarity=0.076  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        38 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv   72 (152)
T 2lrt_A           38 VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIY   72 (152)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEE
Confidence            355577899999997542  223344555567664

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=85.16  E-value=0.24  Score=32.46  Aligned_cols=19  Identities=16%  Similarity=0.613  Sum_probs=15.3

Q ss_pred             CCceEEEeccCCccccccc
Q psy7674          52 NNSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~   70 (164)
                      ...+++|.++||++|..-.
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~   37 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWD   37 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHH
Confidence            3458889999999999753

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=85.10  E-value=0.38  Score=30.54  Aligned_cols=18  Identities=22%  Similarity=0.779  Sum_probs=14.8

Q ss_pred             CceEEEeccCCccccccc
Q psy7674          53 NSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~   70 (164)
                      ..++.|..+||++|+...
T Consensus        27 ~vlv~f~a~wC~~C~~~~   44 (121)
T 2djj_A           27 DVLIEFYAPWCGHCKALA   44 (121)
T ss_dssp             CEEEEEECSSCTTHHHHH
T ss_pred             CEEEEEECCCCHhHHHhh
Confidence            356679999999999875

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=85.04  E-value=0.38  Score=32.20  Aligned_cols=33  Identities=21%  Similarity=0.574  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|......  .+.+.+...++.++
T Consensus        37 vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v   71 (165)
T 3or5_A           37 YIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFV   71 (165)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred             EEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEE
Confidence            3455889999999976522  23334444456653

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=84.96  E-value=0.39  Score=31.51  Aligned_cols=34  Identities=12%  Similarity=0.297  Sum_probs=21.9

Q ss_pred             ceEEEeccCCcccccccch--h---hHHHHhhcCceEEe
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--N---YEKELEKNKIDYFN   87 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~---~~~~l~~~gv~~~~   87 (164)
                      .++.|-.+|||+|+.....  .   +.+.+++.++.++.
T Consensus        34 vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~   72 (142)
T 3eur_A           34 TLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLS   72 (142)
T ss_dssp             EEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEE
T ss_pred             EEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEE
Confidence            3455889999999986421  2   34455556777643

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.91  E-value=0.54  Score=30.16  Aligned_cols=17  Identities=29%  Similarity=0.929  Sum_probs=14.5

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        25 vlv~f~a~wC~~C~~~~   41 (126)
T 1x5e_A           25 WMIEFYAPWCPACQNLQ   41 (126)
T ss_dssp             EEEEEECSSCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHh
Confidence            46779999999999875

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=84.87  E-value=1.4  Score=32.91  Aligned_cols=50  Identities=28%  Similarity=0.469  Sum_probs=33.7

Q ss_pred             hHHHHhhcCceEEee-EEEEeeC--c---EEEe----CCeeEEEEeceEEEecCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDK--H---RVKF----AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~--~---~v~v----~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+.+.+.||+++.+ .+..+..  .   .+.+    +++...+.+|.+++|||.+|+..
T Consensus       196 l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  255 (319)
T 3cty_A          196 YVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTS  255 (319)
T ss_dssp             HHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCG
T ss_pred             HHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChH
Confidence            445667889999887 4455532  1   2444    34334689999999999888753

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=84.85  E-value=0.35  Score=30.27  Aligned_cols=17  Identities=35%  Similarity=0.694  Sum_probs=12.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        24 ~~v~f~a~wC~~C~~~~   40 (112)
T 3d6i_A           24 IVLYFHTSWAEPCKALK   40 (112)
T ss_dssp             EEEEEECCC--CHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            45668899999999865

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=84.84  E-value=0.46  Score=29.89  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=13.8

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        20 ~lv~f~a~wC~~C~~~~   36 (112)
T 2voc_A           20 VLADFWAPWCGPSKMIA   36 (112)
T ss_dssp             EEEEEECTTBGGGGGHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            35668899999999876

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=84.80  E-value=0.3  Score=30.40  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        24 v~v~f~a~wC~~C~~~~   40 (107)
T 1gh2_A           24 AVVKFTMRGCGPCLRIA   40 (107)
T ss_dssp             EEEEEECSSCHHHHHHH
T ss_pred             EEEEEECCCChhhHHHH
Confidence            46679999999999865

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=84.74  E-value=0.58  Score=30.88  Aligned_cols=33  Identities=12%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|......  .+.+.+...++.++
T Consensus        31 ~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv   65 (153)
T 2l5o_A           31 TLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVL   65 (153)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEE
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEE
Confidence            4555788999999875421  22333444456654

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.51  E-value=0.52  Score=30.87  Aligned_cols=16  Identities=25%  Similarity=0.548  Sum_probs=14.0

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|..+|||+|+...
T Consensus        30 lv~f~a~wC~~C~~~~   45 (137)
T 2dj0_A           30 IVEFFANWSNDCQSFA   45 (137)
T ss_dssp             EEEECCTTCSTTTTTH
T ss_pred             EEEEECCCCHHHHHHH
Confidence            6779999999999876

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=84.50  E-value=0.35  Score=32.26  Aligned_cols=32  Identities=16%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             eEEEeccCCcccccc-cc--hhhHHHHhhcCceEE
Q psy7674          55 VVIFSKSWCPFCTKA-KE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        55 vvv~~~~~cp~~~~~-~~--~~~~~~l~~~gv~~~   86 (164)
                      ++.|..+|||+|... ..  ..+.+.++..++.++
T Consensus        34 lv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v   68 (160)
T 3lor_A           34 VVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVI   68 (160)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEE
T ss_pred             EEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEE
Confidence            445888999999874 31  122233334456654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=84.47  E-value=1.8  Score=35.40  Aligned_cols=58  Identities=12%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             CCccccccc-chhhHHHHhhcCceEE---eeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCC
Q psy7674          62 WCPFCTKAK-ENNYEKELEKNKIDYF---NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        62 ~cp~~~~~~-~~~~~~~l~~~gv~~~---~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~  121 (164)
                      +-++|++.. ..+|-+.+.+-+|+++   ...+..++++.+.+.+  +.+.+|.+|.|||-++.
T Consensus       331 ~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv~~~d--~~~~~D~ii~atG~~~~  392 (542)
T 1w4x_A          331 YPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE--REYELDSLVLATGFDAL  392 (542)
T ss_dssp             SCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESS--CEEECSEEEECCCCCCT
T ss_pred             CCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeEEeCC--eEEecCEEEEcCCcccc
Confidence            334676653 3456677788899987   4567777777777754  57999999999998874

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=84.47  E-value=0.33  Score=30.91  Aligned_cols=17  Identities=29%  Similarity=0.747  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        33 vvv~F~a~wC~~C~~~~   49 (114)
T 2oe3_A           33 LVIDFYATWCGPCKMMQ   49 (114)
T ss_dssp             EEEEEECTTCHHHHHTH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            35668899999999876

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=84.47  E-value=0.28  Score=32.62  Aligned_cols=17  Identities=29%  Similarity=0.719  Sum_probs=13.4

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        27 vlv~F~a~wC~~C~~~~   43 (151)
T 3raz_A           27 RIVNLWATWCGPCRKEM   43 (151)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEEcCcCHHHHHHH
Confidence            34558899999999865

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=84.46  E-value=0.31  Score=30.56  Aligned_cols=17  Identities=18%  Similarity=0.364  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        27 vlv~f~a~wC~~C~~~~   43 (111)
T 2pu9_C           27 VVLDMFTQWCGPSKAMA   43 (111)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCcCHhHHHHC
Confidence            45668899999999765

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=84.41  E-value=0.62  Score=33.28  Aligned_cols=33  Identities=9%  Similarity=0.034  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|-.+|||+|+....  ..+.+.++..++.++
T Consensus        50 vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv   84 (208)
T 2f8a_A           50 LLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVL   84 (208)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEE
Confidence            345588899999987432  223344555677664

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=84.40  E-value=0.31  Score=30.04  Aligned_cols=17  Identities=29%  Similarity=0.665  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        20 ~~v~f~~~~C~~C~~~~   36 (105)
T 1nsw_A           20 VLVDFWAAWCGPCRMMA   36 (105)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            46778899999999765

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=84.37  E-value=1.9  Score=33.81  Aligned_cols=46  Identities=15%  Similarity=0.279  Sum_probs=32.4

Q ss_pred             hhHHHHhhcCceEEeeE----EEEee--CcEEE-e---CCeeEEEEeceEEEecCCCC
Q psy7674          73 NYEKELEKNKIDYFNAK----AVFVD--KHRVK-F---AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~----~~~~~--~~~v~-v---~~~~~~~~~d~liiAtGs~~  120 (164)
                      .+.+.+++.|++++.++    ++.+.  ...+. +   ++  ..+.+|.+|+|||+..
T Consensus       166 ~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G--~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          166 AAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADG--KIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTT--EEEECSEEEECCGGGG
T ss_pred             HHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCC--CEEECCEEEECCCCCh
Confidence            45566778899999874    65553  33333 3   44  5799999999999854

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=84.32  E-value=0.31  Score=30.41  Aligned_cols=17  Identities=35%  Similarity=0.786  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        27 ~vv~f~~~~C~~C~~~~   43 (112)
T 1ep7_A           27 IVVDFTATWCGPCKMIA   43 (112)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            36778899999999876

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=84.26  E-value=0.65  Score=32.04  Aligned_cols=33  Identities=9%  Similarity=0.056  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+++.++.++
T Consensus        50 vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv   84 (183)
T 2obi_A           50 CIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL   84 (183)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence            344588899999987642  123344455567664

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=84.18  E-value=0.29  Score=32.87  Aligned_cols=34  Identities=18%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             CceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          53 NSVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      -.++.|..+|||+|......  .+.+.++..++.++
T Consensus        40 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv   75 (164)
T 2h30_A           40 PTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLI   75 (164)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEE
Confidence            34666889999999976521  12222334466654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=84.10  E-value=0.32  Score=29.91  Aligned_cols=17  Identities=24%  Similarity=0.352  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        22 ~lv~f~~~~C~~C~~~~   38 (106)
T 3die_A           22 QLVDFWATACGPCKMIA   38 (106)
T ss_dssp             EEEEEECSBCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHh
Confidence            35668899999999875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=84.03  E-value=0.46  Score=37.44  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+.+|+|||||..|+-+|..|
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L   63 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLL   63 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHH
Confidence            357899999999999999766

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=83.93  E-value=0.33  Score=30.51  Aligned_cols=17  Identities=35%  Similarity=0.735  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        27 vlv~f~a~wC~~C~~~~   43 (109)
T 3f3q_A           27 VVVDFYATWCGPCKMIA   43 (109)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCcCHhHHHHH
Confidence            35669999999999865

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=83.88  E-value=0.45  Score=29.68  Aligned_cols=18  Identities=33%  Similarity=0.689  Sum_probs=14.5

Q ss_pred             CceEEEeccCCccccccc
Q psy7674          53 NSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~   70 (164)
                      ..++.|..+|||+|....
T Consensus        27 ~~lv~f~~~~C~~C~~~~   44 (115)
T 1thx_A           27 PVLVYFWASWCGPCQLMS   44 (115)
T ss_dssp             CEEEEEECTTCTTHHHHH
T ss_pred             eEEEEEECCCCHHHHHhH
Confidence            346678899999999765

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=83.88  E-value=0.34  Score=31.16  Aligned_cols=18  Identities=22%  Similarity=0.947  Sum_probs=14.7

Q ss_pred             CceEEEeccCCccccccc
Q psy7674          53 NSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~   70 (164)
                      ..++.|..+|||+|....
T Consensus        28 ~~lv~f~a~wC~~C~~~~   45 (126)
T 2l57_A           28 PTIIMFKTDTCPYCVEMQ   45 (126)
T ss_dssp             CEEEEEECSSCHHHHHHH
T ss_pred             cEEEEEECCCCccHHHHH
Confidence            456669999999999865

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=83.86  E-value=0.34  Score=30.31  Aligned_cols=17  Identities=29%  Similarity=0.720  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        26 ~vv~f~~~~C~~C~~~~   42 (112)
T 1t00_A           26 VLVDFWAAWCGPCRQIA   42 (112)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHhHHhcC
Confidence            46678999999999765

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=83.74  E-value=0.35  Score=29.48  Aligned_cols=17  Identities=35%  Similarity=0.712  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        19 ~~v~f~~~~C~~C~~~~   35 (104)
T 2e0q_A           19 AVVDFWAEWCAPCLILA   35 (104)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCChhHHHHh
Confidence            45668899999999876

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=83.71  E-value=0.37  Score=31.17  Aligned_cols=17  Identities=24%  Similarity=0.851  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        28 vlv~f~a~wC~~C~~~~   44 (133)
T 2dj3_A           28 VLIEFYAPWCGHCKQLE   44 (133)
T ss_dssp             EEEEECCTTCSHHHHHH
T ss_pred             EEEEEECCCChhHHHHH
Confidence            45668999999999876

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=83.65  E-value=0.35  Score=30.98  Aligned_cols=17  Identities=24%  Similarity=0.587  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        40 ~vv~f~a~wC~~C~~~~   56 (124)
T 1faa_A           40 VVLDMFTQWCGPCKAMA   56 (124)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCcCHhHHHHh
Confidence            45668899999999866

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=83.59  E-value=0.48  Score=30.94  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=13.3

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        36 vll~F~~~~C~~C~~~~   52 (148)
T 3fkf_A           36 LLLNFWASWCDPQPEAN   52 (148)
T ss_dssp             EEEEEECGGGCCCHHHH
T ss_pred             EEEEEECCCCHHHHHHh
Confidence            34558899999999765

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=83.56  E-value=0.35  Score=29.94  Aligned_cols=17  Identities=29%  Similarity=0.636  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        23 ~~v~f~~~~C~~C~~~~   39 (108)
T 2trx_A           23 ILVDFWAEWCGPCKMIA   39 (108)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHhHHHHH
Confidence            36678899999999865

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=83.54  E-value=0.36  Score=29.70  Aligned_cols=17  Identities=47%  Similarity=0.886  Sum_probs=13.9

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        23 ~~v~f~~~~C~~C~~~~   39 (105)
T 3m9j_A           23 VVVDFSATWCGPCKMIK   39 (105)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCChhhHHHH
Confidence            35668899999998875

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=83.54  E-value=0.35  Score=30.64  Aligned_cols=17  Identities=35%  Similarity=0.747  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        36 ~vv~f~a~wC~~C~~~~   52 (117)
T 2xc2_A           36 VVVDFFATWCGPCKTIA   52 (117)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHhHHHHh
Confidence            46678999999999876

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=83.38  E-value=0.3  Score=39.61  Aligned_cols=20  Identities=15%  Similarity=0.076  Sum_probs=17.6

Q ss_pred             CcEEEECCcHHHHHhhcccC
Q psy7674         145 GKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+|+|||||+.|+.+|..|+
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~  128 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQ  128 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHT
T ss_pred             CCEEEECccHHHHHHHHHHH
Confidence            47999999999999998763

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=83.33  E-value=0.41  Score=31.43  Aligned_cols=17  Identities=41%  Similarity=0.931  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        43 vvv~F~a~wC~~C~~~~   59 (133)
T 3cxg_A           43 IVIKFGAVWCKPCNKIK   59 (133)
T ss_dssp             EEEEEECTTCHHHHHTH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            35668999999999875

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=83.20  E-value=2.7  Score=32.36  Aligned_cols=48  Identities=19%  Similarity=0.153  Sum_probs=33.9

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeCc-EEEe-CCeeEEEEeceEEEecCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDKH-RVKF-AGEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~~-~v~v-~~~~~~~~~d~liiAtGs~~~~  122 (164)
                      .+.+.+++.|++++.+ +++.++.. .+++ ++  ..+.+|.+|.|+|..+.+
T Consensus       112 ~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g--~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A          112 ALVNRARALGVDISVNSEAVAADPVGRLTLQTG--EVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             HHHHHHHHTTCEEESSCCEEEEETTTEEEETTS--CEEECSEEEECCCTTCHH
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCC--CEEEcCEEEECCCccHHH
Confidence            3456667789999887 45555322 4555 45  579999999999988753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=83.20  E-value=0.37  Score=29.54  Aligned_cols=17  Identities=29%  Similarity=0.638  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        21 ~~v~f~~~~C~~C~~~~   37 (105)
T 1fb6_A           21 VMVDFWAPWCGPCKLIA   37 (105)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCChHHHHHH
Confidence            46678899999999865

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=83.19  E-value=0.37  Score=29.77  Aligned_cols=17  Identities=29%  Similarity=0.636  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        22 ~lv~f~~~~C~~C~~~~   38 (107)
T 1dby_A           22 VLVDFWAPWCGPCRIIA   38 (107)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHhHHHHH
Confidence            46678899999999875

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=83.18  E-value=0.38  Score=37.54  Aligned_cols=19  Identities=26%  Similarity=0.291  Sum_probs=16.9

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      -.|+|||||..|+.+|..|
T Consensus        80 ~DVvIVGgG~AGL~aA~~L   98 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVL   98 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECccHHHHHHHHHH
Confidence            4799999999999999765

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=83.18  E-value=0.77  Score=31.22  Aligned_cols=32  Identities=13%  Similarity=0.220  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||.|. ....  .+.+.+++.++.++
T Consensus        35 vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv   68 (171)
T 3cmi_A           35 VLIVNVASKCGFTP-QYKELEALYKRYKDEGFTII   68 (171)
T ss_dssp             EEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEE
T ss_pred             EEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEE
Confidence            34557889999999 5321  23344555567764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=83.16  E-value=0.37  Score=30.31  Aligned_cols=17  Identities=29%  Similarity=0.792  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        31 ~vv~f~~~~C~~C~~~~   47 (118)
T 2vm1_A           31 VIIDFTASWCGPCRVIA   47 (118)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHhHHHHh
Confidence            36678899999999875

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=83.10  E-value=0.38  Score=30.82  Aligned_cols=17  Identities=29%  Similarity=0.743  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        26 vlv~f~a~wC~~C~~~~   42 (118)
T 2f51_A           26 VLVDFFATWCGPCQRLG   42 (118)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            45668999999999865

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=83.07  E-value=0.38  Score=29.44  Aligned_cols=17  Identities=35%  Similarity=0.714  Sum_probs=13.8

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        22 ~~v~f~~~~C~~C~~~~   38 (104)
T 2vim_A           22 IVVDFFAQWCGPCRNIA   38 (104)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHhh
Confidence            35668899999999876

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=83.04  E-value=0.6  Score=34.18  Aligned_cols=31  Identities=19%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|+..|||||..... .+..++++.+|++
T Consensus       100 ~v~~F~D~~Cp~C~~~~~-~l~~~~~~g~v~v  130 (241)
T 1v58_A          100 IVYVFADPFCPYCKQFWQ-QARPWVDSGKVQL  130 (241)
T ss_dssp             EEEEEECTTCHHHHHHHH-HHHHHHHTTSEEE
T ss_pred             EEEEEECCCChhHHHHHH-HHHHHHhCCcEEE
Confidence            577799999999997642 1223344434665

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=82.91  E-value=0.51  Score=30.25  Aligned_cols=17  Identities=29%  Similarity=0.761  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        39 ~vv~f~~~~C~~C~~~~   55 (130)
T 1wmj_A           39 VIIDFTASWCGPCRFIA   55 (130)
T ss_dssp             CBEECCSSSCSCSSSSH
T ss_pred             EEEEEECCCChhHHHHH
Confidence            45668889999999876

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=82.89  E-value=1.5  Score=32.47  Aligned_cols=48  Identities=17%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             HHHh-hcCceEEee-EEEEeeC--c---EEEe----CCeeEEEEeceEEEecCCCCCCC
Q psy7674          76 KELE-KNKIDYFNA-KAVFVDK--H---RVKF----AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        76 ~~l~-~~gv~~~~~-~~~~~~~--~---~v~v----~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      +.+. +.||+++.+ .+..++.  .   .+.+    +++...+.+|.+++|+|.+|+.+
T Consensus       186 ~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  244 (311)
T 2q0l_A          186 EHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNA  244 (311)
T ss_dssp             HHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCG
T ss_pred             HHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChh
Confidence            3444 479999877 4455532  2   2444    24334789999999999988754

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=82.86  E-value=0.39  Score=31.10  Aligned_cols=16  Identities=44%  Similarity=0.841  Sum_probs=13.5

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|..+|||+|....
T Consensus        42 vv~f~a~wC~~C~~~~   57 (124)
T 1xfl_A           42 VVDFTASWCGPCRFIA   57 (124)
T ss_dssp             EEEEECTTCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHH
Confidence            5668899999999876

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=82.85  E-value=0.4  Score=37.12  Aligned_cols=19  Identities=32%  Similarity=0.331  Sum_probs=16.8

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      -+|+|||||+.|+.+|..|
T Consensus        66 ~dv~IiG~G~aGl~aA~~l   84 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVI   84 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECccHHHHHHHHHH
Confidence            3799999999999998765

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=82.84  E-value=0.39  Score=30.57  Aligned_cols=18  Identities=33%  Similarity=0.739  Sum_probs=14.5

Q ss_pred             ceEEEeccCCcccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAKE   71 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~   71 (164)
                      .++.|..+|||+|.....
T Consensus        37 ~vv~f~~~~C~~C~~~~~   54 (122)
T 2vlu_A           37 VVIDFTASWCGPCRIMAP   54 (122)
T ss_dssp             EEEEEECTTCHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHH
Confidence            466788999999998763

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=82.72  E-value=0.38  Score=29.89  Aligned_cols=17  Identities=12%  Similarity=0.362  Sum_probs=13.8

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        21 vlv~f~a~wC~~C~~~~   37 (105)
T 4euy_A           21 VLLFIKTENCGVCDVML   37 (105)
T ss_dssp             EEEEEEESSCHHHHHHH
T ss_pred             EEEEEeCCCCcchHHHH
Confidence            35558999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=82.71  E-value=2.4  Score=31.41  Aligned_cols=48  Identities=13%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             HHHHhh-cCceEEee-EEEEeeCc-----EEEe-C---CeeEEEEeceEEEecCCCCCC
Q psy7674          75 EKELEK-NKIDYFNA-KAVFVDKH-----RVKF-A---GEERTVSAQNFIIAVGGRPTY  122 (164)
Q Consensus        75 ~~~l~~-~gv~~~~~-~~~~~~~~-----~v~v-~---~~~~~~~~d~liiAtGs~~~~  122 (164)
                      .+.+++ .||+++.+ .+..++..     .+.+ +   ++...+.+|.+++|+|.+|+.
T Consensus       186 ~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~  244 (310)
T 1fl2_A          186 QDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNT  244 (310)
T ss_dssp             HHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESC
T ss_pred             HHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCc
Confidence            445666 69999987 45555321     2444 2   333478999999999988865

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=82.69  E-value=0.38  Score=31.53  Aligned_cols=18  Identities=28%  Similarity=0.709  Sum_probs=14.8

Q ss_pred             CceEEEeccCCccccccc
Q psy7674          53 NSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~   70 (164)
                      ..++.|..+|||+|....
T Consensus        40 ~~lv~f~a~wC~~C~~~~   57 (136)
T 2l5l_A           40 PAIVDFYADWCGPCKMVA   57 (136)
T ss_dssp             CEEEEEECTTSHHHHHHH
T ss_pred             EEEEEEECCcCHHHHHHH
Confidence            346779999999999875

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=82.65  E-value=0.53  Score=30.81  Aligned_cols=18  Identities=28%  Similarity=0.709  Sum_probs=14.5

Q ss_pred             CceEEEeccCCccccccc
Q psy7674          53 NSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        53 d~vvv~~~~~cp~~~~~~   70 (164)
                      ..++.|..+|||+|....
T Consensus        53 ~vlv~f~a~wC~~C~~~~   70 (141)
T 3hxs_A           53 PAIVDFYADWCGPCKMVA   70 (141)
T ss_dssp             CEEEEEECTTCTTHHHHH
T ss_pred             EEEEEEECCCCHHHHHHH
Confidence            346668999999999865

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=82.60  E-value=0.52  Score=34.54  Aligned_cols=16  Identities=25%  Similarity=0.654  Sum_probs=13.6

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      +++|.++|||+|....
T Consensus       142 vv~F~a~wC~~C~~~~  157 (243)
T 2hls_A          142 IETIITPSCPYCPYAV  157 (243)
T ss_dssp             EEEEECSSCSSHHHHH
T ss_pred             EEEEECCCCCCcHHHH
Confidence            4569999999999876

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=82.57  E-value=0.41  Score=29.47  Aligned_cols=17  Identities=29%  Similarity=0.682  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        21 ~lv~f~~~~C~~C~~~~   37 (109)
T 2yzu_A           21 VLVDFWAEWCAPCRMIA   37 (109)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHhh
Confidence            45668899999999865

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=82.56  E-value=0.4  Score=39.85  Aligned_cols=19  Identities=32%  Similarity=0.321  Sum_probs=16.9

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      -+|+|||||..|+-+|..|
T Consensus        36 ~DVvIVGaG~aGlaaA~~L   54 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRL   54 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHH
Confidence            4699999999999999776

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.52  E-value=0.44  Score=30.71  Aligned_cols=17  Identities=29%  Similarity=0.794  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        28 ~lv~f~a~wC~~C~~~~   44 (133)
T 1x5d_A           28 WMVEFYAPWCGHCKNLE   44 (133)
T ss_dssp             EEEEEECTTCHHHHTHH
T ss_pred             EEEEEECCCCHHHHhhc
Confidence            35668999999999865

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=82.46  E-value=0.41  Score=29.50  Aligned_cols=17  Identities=24%  Similarity=0.518  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        24 ~lv~f~~~~C~~C~~~~   40 (109)
T 3tco_A           24 VLVDCWAEWCAPCHLYE   40 (109)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHhhh
Confidence            35668899999999865

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=82.46  E-value=1  Score=36.55  Aligned_cols=52  Identities=13%  Similarity=0.060  Sum_probs=34.0

Q ss_pred             hHHHHhhcCceEEee-EEEEeeC-----c--EEEe-CC-ee--EEEEeceEEEecCCCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFVDK-----H--RVKF-AG-EE--RTVSAQNFIIAVGGRPTYPDI  125 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~~~-----~--~v~v-~~-~~--~~~~~d~liiAtGs~~~~p~i  125 (164)
                      +.+.+++.|++++.+ +++.+..     .  .+.+ +. ++  ..+.+|++|+|||+++.....
T Consensus       172 L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~  235 (497)
T 2bry_A          172 LLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGF  235 (497)
T ss_dssp             HHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccc
Confidence            345566679999887 4555532     1  3444 11 22  358999999999998876544

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=82.43  E-value=0.41  Score=30.07  Aligned_cols=17  Identities=29%  Similarity=0.767  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        29 vlv~f~a~~C~~C~~~~   45 (112)
T 1syr_A           29 VIVDFFAEWCGPCKRIA   45 (112)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            35668899999999876

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=82.38  E-value=0.42  Score=29.36  Aligned_cols=16  Identities=31%  Similarity=0.760  Sum_probs=13.5

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|..+|||+|....
T Consensus        24 vv~f~~~~C~~C~~~~   39 (106)
T 1xwb_A           24 VLDFFATWCGPCKMIS   39 (106)
T ss_dssp             EEEEECTTCHHHHHHH
T ss_pred             EEEEECCcCHHHHHhh
Confidence            5678889999999765

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=82.38  E-value=0.43  Score=29.59  Aligned_cols=17  Identities=24%  Similarity=0.819  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        24 ~lv~f~~~~C~~C~~~~   40 (111)
T 3uvt_A           24 TFIKFYAPWCGHCKTLA   40 (111)
T ss_dssp             EEEEEECSSCHHHHHHH
T ss_pred             EEEEEECCCChhHHHhh
Confidence            36678999999999765

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=82.18  E-value=0.43  Score=29.36  Aligned_cols=17  Identities=29%  Similarity=0.637  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        23 ~lv~f~~~~C~~C~~~~   39 (107)
T 2i4a_A           23 VLVDFWAEWCGPCKMIG   39 (107)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCChhHHHHh
Confidence            35668899999999875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=82.17  E-value=0.44  Score=29.59  Aligned_cols=17  Identities=35%  Similarity=0.815  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        25 vlv~f~a~~C~~C~~~~   41 (111)
T 3gnj_A           25 CLVMFSRKNCHVCQKVT   41 (111)
T ss_dssp             EEEEEECSSCHHHHHHH
T ss_pred             EEEEEeCCCChhHHHHH
Confidence            46779999999999865

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=82.07  E-value=0.43  Score=30.36  Aligned_cols=17  Identities=41%  Similarity=0.663  Sum_probs=13.9

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        34 vlv~F~a~wC~~C~~~~   50 (116)
T 3qfa_C           34 VVVDFSATWCGPSKMIK   50 (116)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            35668899999999866

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=82.01  E-value=0.45  Score=42.31  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=17.9

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      .++|+|||||+.|+.+|..|
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L  206 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFL  206 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHH
Confidence            46899999999999999876

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=81.90  E-value=0.44  Score=39.33  Aligned_cols=19  Identities=21%  Similarity=0.209  Sum_probs=17.0

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      .+|+|||||..|+.+|..|
T Consensus       127 ~DVvVVGaG~aGl~aA~~l  145 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISA  145 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHH
Confidence            5799999999999999765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=81.84  E-value=0.44  Score=39.51  Aligned_cols=19  Identities=32%  Similarity=0.357  Sum_probs=16.7

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      -.|+|||||.+|+-+|..|
T Consensus        50 ~DVvIVGaG~aGL~~A~~L   68 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGEL   68 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHH
Confidence            4699999999999999876

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=81.80  E-value=0.46  Score=29.59  Aligned_cols=16  Identities=50%  Similarity=1.078  Sum_probs=13.4

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|..+|||+|....
T Consensus        30 vv~f~~~~C~~C~~~~   45 (113)
T 1ti3_A           30 VVDFTASWCPPCKMIA   45 (113)
T ss_dssp             EEEEECSSCHHHHHHH
T ss_pred             EEEEECCCCHHHHHHH
Confidence            5668889999999765

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=81.65  E-value=0.62  Score=29.80  Aligned_cols=17  Identities=29%  Similarity=0.688  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        36 vvv~f~a~~C~~C~~~~   52 (121)
T 2j23_A           36 VVIDFWATWCGPCKMIG   52 (121)
T ss_dssp             EEEEEECTTCSTHHHHH
T ss_pred             EEEEEECCCCHhHHHHH
Confidence            45678899999999865

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=81.42  E-value=0.55  Score=31.24  Aligned_cols=15  Identities=27%  Similarity=0.474  Sum_probs=12.0

Q ss_pred             eEEEeccCCcccccc
Q psy7674          55 VVIFSKSWCPFCTKA   69 (164)
Q Consensus        55 vvv~~~~~cp~~~~~   69 (164)
                      ++.|..+|||+|...
T Consensus        32 lv~f~a~wC~~C~~~   46 (158)
T 3eyt_A           32 VIEAFQMLCPGCVMH   46 (158)
T ss_dssp             EEEEECTTCHHHHHT
T ss_pred             EEEEECCcCcchhhh
Confidence            444788999999984

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=81.32  E-value=0.39  Score=31.17  Aligned_cols=17  Identities=24%  Similarity=0.933  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        32 vlv~f~a~wC~~C~~~~   48 (133)
T 3fk8_A           32 TLLVFGANWCTDCRALD   48 (133)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEcCCCCHHHHHHH
Confidence            35668999999999876

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=81.30  E-value=0.47  Score=30.81  Aligned_cols=17  Identities=41%  Similarity=1.026  Sum_probs=13.4

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        37 ~ll~f~~~~C~~C~~~~   53 (145)
T 3erw_A           37 TILHFWTSWCPPCKKEL   53 (145)
T ss_dssp             EEEEEECSSCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            35558899999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=81.28  E-value=2  Score=34.38  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=23.6

Q ss_pred             eeCcEEEe-CCeeEEEEeceEEEecCCCCCCCCCC
Q psy7674          93 VDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIP  126 (164)
Q Consensus        93 ~~~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~  126 (164)
                      ++...+.+ +|  +.+.+|.+|+|||-+|..|-++
T Consensus       250 i~~~~V~~~dG--~~i~~D~Vi~atG~~p~~~~l~  282 (464)
T 2xve_A          250 VDTENAYFADG--SSEKVDAIILCTGYIHHFPFLN  282 (464)
T ss_dssp             ECSSEEEETTS--CEEECSEEEECCCBCCCCTTBC
T ss_pred             EeCCEEEECCC--CEEeCCEEEECCCCCCCCCCcC
Confidence            34445555 55  5789999999999998876554

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=81.26  E-value=0.52  Score=30.74  Aligned_cols=17  Identities=24%  Similarity=0.772  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+||++|+...
T Consensus        37 vlv~f~a~wC~~C~~~~   53 (140)
T 2dj1_A           37 VLLEFYAPWCGHCKQFA   53 (140)
T ss_dssp             EEEEECCTTCHHHHTTH
T ss_pred             EEEEEECCCCHHHHHhh
Confidence            36778999999999875

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=81.23  E-value=0.78  Score=31.48  Aligned_cols=29  Identities=17%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             eEEEeccCCcccccccc--hhhHHHHhhcCc
Q psy7674          55 VVIFSKSWCPFCTKAKE--NNYEKELEKNKI   83 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv   83 (164)
                      ++.|..+|||+|.....  ..+.+.++..++
T Consensus        63 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~   93 (183)
T 3lwa_A           63 ILNAWGQWCAPCRSESDDLQIIHEELQAAGN   93 (183)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             EEEEECCcCHhHHHHHHHHHHHHHHHHhcCC
Confidence            44477899999997642  233445566666

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=81.18  E-value=0.66  Score=31.28  Aligned_cols=33  Identities=18%  Similarity=0.130  Sum_probs=21.5

Q ss_pred             ceEEEe-ccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFS-KSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~-~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|. .+|||+|.....  ..+.+.+++.|+.++
T Consensus        32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv   67 (161)
T 3drn_A           32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVI   67 (161)
T ss_dssp             EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEE
T ss_pred             EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEE
Confidence            455577 899999998642  233445556677764

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=81.09  E-value=0.55  Score=30.57  Aligned_cols=17  Identities=24%  Similarity=0.421  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        43 vlv~F~a~wC~~C~~~~   59 (128)
T 2o8v_B           43 ILVDFWAEWCGPAKMIA   59 (128)
T ss_dssp             EEEEEECSSCHHHHHTH
T ss_pred             EEEEEECCCCHHHHHHh
Confidence            45668999999999875

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=81.05  E-value=0.5  Score=30.06  Aligned_cols=17  Identities=35%  Similarity=0.680  Sum_probs=14.3

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        24 ~lv~f~a~~C~~C~~~~   40 (122)
T 3aps_A           24 WVVDFYAPWCGPCQNFA   40 (122)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            46779999999999865

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=80.95  E-value=0.46  Score=31.19  Aligned_cols=31  Identities=10%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .++.|..+|||+|+.... .+.++.+++++.+
T Consensus        34 vlv~F~a~wC~~C~~~~p-~l~~l~~~~~v~~   64 (135)
T 3emx_A           34 AILAVYSKTCPHCHRDWP-QLIQASKEVDVPI   64 (135)
T ss_dssp             EEEEEEETTCHHHHHHHH-HHHHHHTTCCSCE
T ss_pred             EEEEEECCcCHhhhHhCh-hHHHHHHHCCCEE
Confidence            356688999999998652 2233444455554

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=80.90  E-value=0.41  Score=32.68  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=12.9

Q ss_pred             ceEEEeccCCcccccc
Q psy7674          54 SVVIFSKSWCPFCTKA   69 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~   69 (164)
                      .++.|..+|||+|+..
T Consensus        50 vlv~F~A~WC~~C~~~   65 (172)
T 3f9u_A           50 VMLDFTGYGCVNCRKM   65 (172)
T ss_dssp             EEEEEECTTCHHHHHH
T ss_pred             EEEEEECCCCHHHHHH
Confidence            3555999999999974

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=80.82  E-value=0.55  Score=39.73  Aligned_cols=20  Identities=10%  Similarity=0.107  Sum_probs=17.7

Q ss_pred             CCcEEEECCcHHHHHhhccc
Q psy7674         144 PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       144 ~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+|+|||||.+|+-+|..|
T Consensus       264 ~~DVvIIGgGiaGlsaA~~L  283 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALAL  283 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHH
Confidence            36799999999999999876

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=80.72  E-value=0.52  Score=30.06  Aligned_cols=17  Identities=35%  Similarity=0.708  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        34 vlv~f~a~~C~~C~~~~   50 (119)
T 1w4v_A           34 VVVDFHAQWCGPCKILG   50 (119)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            46678899999999865

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=80.65  E-value=0.5  Score=39.82  Aligned_cols=19  Identities=5%  Similarity=-0.001  Sum_probs=17.2

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      .+|+|||||.+|+-+|..|
T Consensus       273 ~DVvIIGgGiaGlsaA~~L  291 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLAL  291 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHH
Confidence            6899999999999999776

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=80.64  E-value=0.43  Score=31.26  Aligned_cols=17  Identities=18%  Similarity=0.630  Sum_probs=13.6

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        34 vlv~F~a~wC~~C~~~~   50 (134)
T 2fwh_A           34 VMLDLYADWCVACKEFE   50 (134)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            45668899999999754

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=80.51  E-value=0.23  Score=37.89  Aligned_cols=23  Identities=26%  Similarity=0.826  Sum_probs=18.7

Q ss_pred             eEecCCceEEEeccCCccccccc
Q psy7674          48 KHIDNNSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        48 ~~ig~d~vvv~~~~~cp~~~~~~   70 (164)
                      +++....+++|.++|||+|+..+
T Consensus       194 ~~l~~~~vV~F~A~WC~~Ck~l~  216 (291)
T 3kp9_A          194 AHLRQIGGTMYGAYWCPHCQDQK  216 (291)
T ss_dssp             HHHHHTTCEEEECTTCHHHHHHH
T ss_pred             HHhCCCCEEEEECCCCHHHHHHH
Confidence            34455668999999999999877

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=80.49  E-value=0.81  Score=32.74  Aligned_cols=33  Identities=18%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcccccccch--hhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKEN--NYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~--~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|......  .+.+.+++.++.++
T Consensus        62 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv   96 (218)
T 3u5r_E           62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVV   96 (218)
T ss_dssp             EEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEE
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEE
Confidence            4555888999999876422  23344455567664

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=80.48  E-value=0.81  Score=31.68  Aligned_cols=33  Identities=15%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcccccccc--hhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~--~~~~~~l~~~gv~~~   86 (164)
                      .++.|..+|||+|.....  ..+.+.+.+.++.++
T Consensus        49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv   83 (196)
T 2ywi_A           49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFV   83 (196)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEE
Confidence            466688999999986542  123334444567764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=80.35  E-value=2.5  Score=31.91  Aligned_cols=48  Identities=19%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--C-c--EEEe-CCeeEEEEeceEEEecCCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--K-H--RVKF-AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~-~--~v~v-~~~~~~~~~d~liiAtGs~~  120 (164)
                      .+.+.+++.|++++.+ +++.+.  . .  .+.+ +++...+.+|.+|+|+|+..
T Consensus       155 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          155 AYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            3556677889999976 555553  2 2  2333 33224799999999999753

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=80.21  E-value=0.55  Score=29.68  Aligned_cols=17  Identities=29%  Similarity=0.694  Sum_probs=14.4

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        33 ~lv~f~~~~C~~C~~~~   49 (121)
T 2i1u_A           33 VLVDFWATWCGPCKMVA   49 (121)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHH
Confidence            46779999999999876

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=80.19  E-value=0.55  Score=30.36  Aligned_cols=17  Identities=35%  Similarity=0.829  Sum_probs=13.7

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        45 vlv~F~a~wC~~C~~~~   61 (128)
T 3ul3_B           45 IVLYFFAKWCQACTMQS   61 (128)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHh
Confidence            34558999999999865

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=80.05  E-value=0.42  Score=32.62  Aligned_cols=17  Identities=24%  Similarity=0.346  Sum_probs=14.0

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|.++||++|+.-.
T Consensus        47 VlV~F~A~WC~~Ck~m~   63 (151)
T 3ph9_A           47 LMVIHHLEDCQYSQALK   63 (151)
T ss_dssp             EEEEECCTTCHHHHHHH
T ss_pred             EEEEEECCCCHhHHHHH
Confidence            45669999999999865

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=81.00  E-value=0.36  Score=29.51  Aligned_cols=17  Identities=29%  Similarity=0.649  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        22 ~~v~f~~~~C~~C~~~~   38 (106)
T 2yj7_A           22 VLVDFWAPWCGPCRMIA   38 (106)
Confidence            46668899999999876

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=80.19  E-value=0.4  Score=30.93  Aligned_cols=17  Identities=29%  Similarity=0.919  Sum_probs=13.9

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|....
T Consensus        22 vlv~f~a~wC~~C~~~~   38 (130)
T 2lst_A           22 VMVYFHSEHCPYCQQMN   38 (130)
Confidence            45668899999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	4e-10
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	2e-09
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	1e-08
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	2e-08
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	8e-08
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	8e-08
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	2e-07
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-07
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	3e-07
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	1e-06
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	8e-06
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	8e-06
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	9e-06
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	1e-05
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	6e-05
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	2e-04
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	3e-04
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	7e-04
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	0.001
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	0.001
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	0.002

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 52.4 bits (125), Expect = 4e-10
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 122 YPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
           +P + G    I+SD+ F++ K+  K+ +VG+ YIA+E    
Sbjct: 1   FPPVKGIENTISSDEFFNI-KESKKIGIVGSGYIAVELINV 40

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (119), Expect = 2e-09
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 124 DIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
           DIPG   GI SD  F+L   P +V +VGA YI +E  G 
Sbjct: 1   DIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGV 39

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 48.3 bits (114), Expect = 1e-08
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 127 GAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
           G  L ITS++ F L++ P + L VG  YI++E AG 
Sbjct: 1   GDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGI 36

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 125 IPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD 163
           IPG    I+S++ F L + P +VL VG  +I++E AG  
Sbjct: 1   IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIF 39

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 46.2 bits (109), Expect = 8e-08
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 119 RPTYPDIPGAHLGITSDDLFSLN------KDPGKVLLVGASYIALECAGC 162
           R   P I G    +T   +F  +      ++ G+ +++G  +I LE AG 
Sbjct: 1   RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGN 50

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.8 bits (108), Expect = 8e-08
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 48  KHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV 107
             I    VV+F K  CPFC K +E    +   K  +  F       D + ++   ++ T 
Sbjct: 7   SKIQPGKVVVFIKPTCPFCRKTQE-LLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65

Query: 108 SAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKD 143
           +     + +G            +G    DL S++K 
Sbjct: 66  ARTVPRVFIGKE---------CIG-GCTDLESMHKR 91

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 124 DIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
            IPGA LGITSD  F L + PG+ ++VGA YIA+E AG 
Sbjct: 2   QIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 40

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (104), Expect = 2e-07
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 14/91 (15%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
            VIF +S CP+C +AK+       EK   +  + +  +VD        E+          
Sbjct: 3   TVIFGRSGCPYCVRAKD-----LAEKLSNERDDFQYQYVDIRAEGITKEDL------QQK 51

Query: 115 AVGGRPTYP--DIPGAHLGITSDDLFSLNKD 143
           A     T P   +   H+G    D  +  K+
Sbjct: 52  AGKPVETVPQIFVDQQHIG-GYTDFAAWVKE 81

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-07
 Identities = 24/36 (66%), Positives = 27/36 (75%), Gaps = 1/36 (2%)

Query: 126 PGAH-LGITSDDLFSLNKDPGKVLLVGASYIALECA 160
           PG     I+SDDLFSL   PGK L+VGASY+ALECA
Sbjct: 1   PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECA 36

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 43.3 bits (101), Expect = 1e-06
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 120 PTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
              P IP     I S    +L + PGK+L++G   I LE    
Sbjct: 2   TKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTV 44

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.0 bits (95), Expect = 8e-06
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 123 PDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALEC 159
           P+   ++  + S    +L + P  ++++G  YI +E 
Sbjct: 1   PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIEL 37

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 40.0 bits (93), Expect = 8e-06
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 21/91 (23%)

Query: 55  VVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFII 114
           V I++K  CP+C +AK     K +   ++                    +   + +  +I
Sbjct: 3   VEIYTKETCPYCHRAKALLSSKGVSFQELPI------------------DGNAAKREEMI 44

Query: 115 AVGGRPTYP--DIPGAHLGITSDDLFSLNKD 143
              GR T P   I   H+G   DDL++L+  
Sbjct: 45  KRSGRTTVPQIFIDAQHIG-GYDDLYALDAR 74

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.5 bits (92), Expect = 9e-06
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 53 NSVVIFSKSWCPFCTKAKE 71
           S+ IF+K  CPFC KAK+
Sbjct: 5  ESISIFTKPGCPFCAKAKQ 23

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.2 bits (93), Expect = 1e-05
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 125 IPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAG 161
           +P     I+S +  +    P  +++VG  YI LE   
Sbjct: 2   LPLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGI 38

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 37.3 bits (86), Expect = 6e-05
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 54  SVVIFSKSWCPFCTKAKE--NNYEKELEKNKIDYFNAKAVFVDKHRVKFAG 102
           S+ +++K  C  CT  K+  +          I   +    +V       A 
Sbjct: 2   SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAP 52

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 123 PDIPGAHLGI----TSDDLFSLN---KDPGKVLLVGASYIALECAGC 162
           P + GA + +    T +D   +    +   ++L+VG   I LE A  
Sbjct: 2   PTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAAT 48

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 126 PGAHLG----ITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
           PG  +     ++S    SL + P ++ ++G   I LE    
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSV 41

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.6 bits (81), Expect = 7e-04
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 125 IPGAHLG----ITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
           +PG  +     ++S    +L++ P K++++GA YI LE    
Sbjct: 2   LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSV 43

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 132 ITSDDLFSLNKDPGKVLLVGASYIALECAGC 162
           + S         PGK+ ++GA  I LE    
Sbjct: 10  VDSTGALDFQNVPGKLGVIGAGVIGLELGSV 40

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 54 SVVIFSKSWCPFCTKAK 70
           + I++++ C  C   K
Sbjct: 2  RITIYTRNDCVQCHATK 18

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 26/101 (25%)

Query: 50  IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEE 104
            +  SV++F K     + C F  +  E      L    ++Y   +   + +         
Sbjct: 12  TNKASVMLFMKGNKQEAKCGFSKQILE-----ILNSTGVEY---ETFDILEDEEV----- 58

Query: 105 RTVSAQNFIIAVGGRPTYP--DIPGAHLGITSDDLFSLNKD 143
                +  +      PTYP   + G  +G   D +  L  +
Sbjct: 59  -----RQGLKTFSNWPTYPQLYVRGDLVG-GLDIVKELKDN 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.07
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.04
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.97
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.83
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.83
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.81
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.8
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.8
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.73
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.71
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.71
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.71
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	98.71
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.67
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	98.63
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.56
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.55
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.31
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	98.28
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	98.28
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.27
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	98.17
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.12
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	98.11
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.1
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	98.08
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.04
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.97
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.68
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.65
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.6
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.54
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.54
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.51
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.49
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.47
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.39
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.28
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.23
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.11
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.09
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.07
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.03
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.96
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.88
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.87
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.86
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.85
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.82
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	96.8
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.79
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.65
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.57
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.41
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.27
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.19
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.18
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.14
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.14
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.01
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.92
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.86
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.62
d1wjka_	100	Thioredoxin-like structure containing protein C330	95.53
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.5
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	95.3
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	95.26
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.22
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.13
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.13
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.75
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.54
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.17
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	94.08
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.93
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	93.27
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.04
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.96
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.82
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	92.74
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.55
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.52
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	92.35
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.33
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.83
d1wjka_	100	Thioredoxin-like structure containing protein C330	91.21
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	91.05
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	90.48
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	90.01
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	89.92
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	88.34
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.33
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	87.88
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	87.53
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	87.42
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	87.07
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.05
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	86.95
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	86.68
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	86.23
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	86.01
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	86.01
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	85.57
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	85.1
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.98
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	83.77
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	83.19
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	83.09
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	82.87
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	82.85
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.49
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	82.45
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	81.97
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	81.18
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	80.86
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	80.73

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.07  E-value=3.9e-11  Score=79.85  Aligned_cols=44  Identities=32%  Similarity=0.467  Sum_probs=40.6

Q ss_pred             CCCCCCCCccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         120 PTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       120 ~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |++|.+|+.++++++++++.+.+.|++++|||||++|+|+|..|
T Consensus         2 ~~lP~ip~~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~   45 (125)
T d1ojta2           2 TKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVY   45 (125)
T ss_dssp             CCCSSCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHH
T ss_pred             CCCCCCCCCCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHh
Confidence            57888888788999999999999999999999999999999876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.04  E-value=4.1e-11  Score=78.86  Aligned_cols=41  Identities=32%  Similarity=0.617  Sum_probs=37.9

Q ss_pred             CCCCCCccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         122 YPDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       122 ~p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +|+|||.++++++++++++++ |++++|||||++|+|+|..|
T Consensus         1 ~P~IpG~e~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l   41 (117)
T d1onfa2           1 FPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVI   41 (117)
T ss_dssp             CCSCTTGGGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHH
T ss_pred             CcccCCHhHcCchhHHhccCC-CCEEEEECCchHHHHHHHHH
Confidence            589999988999999999887 89999999999999999876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.97  E-value=1.5e-10  Score=75.90  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=38.3

Q ss_pred             CCCCCccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         123 PDIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       123 p~i~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |++|+.++++++++++.+.+.|++++|||||++|+|+|..|
T Consensus         1 P~~~~~~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l   41 (117)
T d1ebda2           1 PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAY   41 (117)
T ss_dssp             TTBCCCSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             CcCCCCCCEEChhHhhChhhcCCeEEEECCCccceeeeeee
Confidence            67888888999999999999999999999999999999876

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.1e-10  Score=73.48  Aligned_cols=40  Identities=58%  Similarity=0.938  Sum_probs=36.9

Q ss_pred             CCCCccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         124 DIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       124 ~i~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .|||.++++|+++++.+++.|++++|||||++|+|+|..|
T Consensus         2 ~IPG~e~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l   41 (125)
T d3grsa2           2 QIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGIL   41 (125)
T ss_dssp             TSTTGGGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCCccccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHH
Confidence            4788888899999999999999999999999999999876

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.83  E-value=9.5e-10  Score=75.26  Aligned_cols=51  Identities=22%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             EecCCCCCCC-CCCCc----cceechhhhccCcCCCCcEEEE---CCcHHHHHhhcccC
Q psy7674         114 IAVGGRPTYP-DIPGA----HLGITSDDLFSLNKDPGKVLLV---GASYIALECAGCDK  164 (164)
Q Consensus       114 iAtGs~~~~p-~i~g~----~~v~~~~~~~~~~~~~~~vvVi---GgG~~g~E~A~~l~  164 (164)
                      -|||+.|..| |+||.    .+++|++|++.....+++.+||   |||++|+|+|..|+
T Consensus         3 ~atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la   61 (156)
T d1djqa2           3 NTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLA   61 (156)
T ss_dssp             CSSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHH
Confidence            4899999987 79997    3688999999988877665555   99999999998873

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=7.1e-10  Score=72.54  Aligned_cols=40  Identities=48%  Similarity=0.796  Sum_probs=36.8

Q ss_pred             CCCCccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         124 DIPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       124 ~i~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +|||.++++++++++++++.|++++|||||++|+|+|..|
T Consensus         1 diPG~e~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l   40 (116)
T d1gesa2           1 DIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVI   40 (116)
T ss_dssp             CSTTGGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             CcCCccccCCHHHHhChhhCCCEEEEECCChhhHHHHHHh
Confidence            3788888899999999999999999999999999999876

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.80  E-value=1.3e-09  Score=71.35  Aligned_cols=39  Identities=41%  Similarity=0.671  Sum_probs=35.7

Q ss_pred             CCCccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         125 IPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       125 i~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |||.++++++++++.+.+.|++++|||||++|+|+|..|
T Consensus         1 iPG~~~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l   39 (117)
T d1aoga2           1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIF   39 (117)
T ss_dssp             CTTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHH
T ss_pred             CcCccceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHh
Confidence            578788999999999999999999999999999999654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=1.4e-09  Score=71.79  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=35.9

Q ss_pred             CCCCCc-cceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         123 PDIPGA-HLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       123 p~i~g~-~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |+++.. ++++++++++.+.+.|++++|||||++|+|+|..|
T Consensus         1 Pgi~~d~~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l   42 (122)
T d1v59a2           1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVY   42 (122)
T ss_dssp             TTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCccCCCEEEehHHhhCcccCCCeEEEECCCchHHHHHHHH
Confidence            455522 78999999999999999999999999999999876

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.73  E-value=1.9e-09  Score=71.19  Aligned_cols=42  Identities=26%  Similarity=0.426  Sum_probs=36.8

Q ss_pred             CCCCCCc-cceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         122 YPDIPGA-HLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       122 ~p~i~g~-~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +|+++.. ++++++++++.+.+.|++++|||||++|+|+|..|
T Consensus         2 iPgi~~d~~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~   44 (123)
T d1dxla2           2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVW   44 (123)
T ss_dssp             BTTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHH
T ss_pred             CCCCcCCCCeEEeHHHhhCccccCCeEEEEccchHHHHHHHHH
Confidence            4566533 78999999999999999999999999999999876

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.71  E-value=3.4e-09  Score=69.53  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=35.7

Q ss_pred             CCCccceechhhhccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         125 IPGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       125 i~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      +.+ ++++++++++.+++.|++++|||||++|+|+|..|+
T Consensus         4 ~d~-~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~   42 (119)
T d3lada2           4 VDQ-DVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWA   42 (119)
T ss_dssp             CCS-SSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHH
T ss_pred             CCC-CEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHH
Confidence            555 889999999999999999999999999999998763

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.71  E-value=4.1e-10  Score=74.35  Aligned_cols=45  Identities=29%  Similarity=0.562  Sum_probs=34.9

Q ss_pred             CCCCCCCCCccceechhhhccC---c---CCCCcEEEECCcHHHHHhhccc
Q psy7674         119 RPTYPDIPGAHLGITSDDLFSL---N---KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       119 ~~~~p~i~g~~~v~~~~~~~~~---~---~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ||+.|+|||.+++++++++.+.   .   +.+++++|||||++|+|+|..|
T Consensus         1 R~r~p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l   51 (122)
T d1xhca2           1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNL   51 (122)
T ss_dssp             EECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHH
T ss_pred             CCCCcCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHh
Confidence            5789999998777765444332   2   2358999999999999999876

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=3.7e-09  Score=75.48  Aligned_cols=89  Identities=29%  Similarity=0.450  Sum_probs=64.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccce-------ech-hhhccCc---
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLG-------ITS-DDLFSLN---  141 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v-------~~~-~~~~~~~---  141 (164)
                      .++.++++.||+++.+............++  ..+.++.+++|||++|.+|++|+.+.+       .+. ......+   
T Consensus        96 ~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~--~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~  173 (217)
T d1gesa1          96 SYENVLGKNNVDVIKGFARFVDAKTLEVNG--ETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQ  173 (217)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEETTEEEETT--EEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTS
T ss_pred             HHHHHHhCCeEEEEeeecccceeeeecCCC--ceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeCchh
Confidence            456678888999988877766666666666  789999999999999999998865321       111 1111111   


Q ss_pred             -CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 -KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 -~~~~~vvViGgG~~g~E~A~~l  163 (164)
                       ..+++|.+||+|.+|+|+|..+
T Consensus       174 ~t~~~~i~~iG~g~~g~ela~~~  196 (217)
T d1gesa1         174 NTNIEGIYAVGDNTGAVELTPVA  196 (217)
T ss_dssp             BCSSTTEEECSGGGTSCCCHHHH
T ss_pred             ccCCCcEEEECCCccHHHHHHHH
Confidence             2357899999999999988643

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.9e-09  Score=68.86  Aligned_cols=50  Identities=8%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++-||++.+++|++++++.+   .++++.+.+.+|++|+|+|||+|+|||+.+
T Consensus        36 ak~lL~~~~i~~~~~~v~~~---~~~~~~l~~~t~~~TvPqIFi~g~~IGG~d   85 (109)
T d1wika_          36 ILEILNSTGVEYETFDILED---EEVRQGLKTFSNWPTYPQLYVRGDLVGGLD   85 (109)
T ss_dssp             HHHHHHHTCSCEEEEESSSC---HHHHHHHHHHHSCCSSCEEECSSSEEECHH
T ss_pred             HHHHHHhcCCCceEEEeccc---HHHHHHHHHhcCCCCCCeEEECCEEEcCHH
Confidence            45678899999999999887   778999999999999999999999999544

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.67  E-value=9.1e-10  Score=81.21  Aligned_cols=83  Identities=23%  Similarity=0.466  Sum_probs=53.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEeCC------------eeEEEEeceEEEecCCCCC--CCCCCCc----cceech
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAG------------EERTVSAQNFIIAVGGRPT--YPDIPGA----HLGITS  134 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~------------~~~~~~~d~liiAtGs~~~--~p~i~g~----~~v~~~  134 (164)
                      .++.++++.||+++.|++.+++.+++.+++            +.+.+.+|+++||||++|.  .+.+|+.    ..+.++
T Consensus        93 ~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i~ts  172 (259)
T d1onfa1          93 IYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETN  172 (259)
T ss_dssp             HHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTSSCTTTTCCBS
T ss_pred             chhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccccccccceeeec
Confidence            356778889999999999888877766521            2246899999999999994  2223332    467788


Q ss_pred             hhhccCcCCCCcEEEECCcHHH
Q psy7674         135 DDLFSLNKDPGKVLLVGASYIA  156 (164)
Q Consensus       135 ~~~~~~~~~~~~vvViGgG~~g  156 (164)
                      ++.+.++..| +..|+|+|++|
T Consensus       173 ~~~~~~d~~~-~t~Vig~gaiG  193 (259)
T d1onfa1         173 NNYIVVDENQ-RTSVNNIYAVG  193 (259)
T ss_dssp             SSCEEECTTC-BCSSSSEEECS
T ss_pred             ccccccccCC-ceeEeeEEEEE
Confidence            8888877665 55788988887

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.63  E-value=8.8e-09  Score=66.09  Aligned_cols=53  Identities=23%  Similarity=0.376  Sum_probs=45.3

Q ss_pred             cccccCCCCCc---cEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCc
Q psy7674           2 VDIQTAPPDYN---FQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNS   54 (164)
Q Consensus         2 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~   54 (164)
                      ++-||++.+++   +.+.++|...|...+++++.+.+|++|+|+|||+|++||+.+
T Consensus        28 ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g~~IGG~~   83 (105)
T d1ktea_          28 TQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCT   83 (105)
T ss_dssp             HHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHH
T ss_pred             HHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECCEEEecHH
Confidence            34567777766   678899999999999999999999999999999999999543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=1.6e-08  Score=65.67  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=33.9

Q ss_pred             CCccceechhhhccCcCCCCcEEEECCcHHHHHhhccc
Q psy7674         126 PGAHLGITSDDLFSLNKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       126 ~g~~~v~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      |...+++++++++.+...|++++|||||++|+|+|..|
T Consensus         3 p~g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l   40 (115)
T d1lvla2           3 PLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAY   40 (115)
T ss_dssp             CCBTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHH
Confidence            43367889999999999999999999999999999876

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=98.55  E-value=1.2e-08  Score=62.47  Aligned_cols=48  Identities=29%  Similarity=0.509  Sum_probs=41.4

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++|++++|+.+   ...++.+.+.+|.+|+|++|+++++||+
T Consensus        17 ak~~L~~~~i~y~~~di~~~---~~~~~~~~~~~g~~tvP~i~i~~~~IGG   64 (82)
T d1fova_          17 AKALLSSKGVSFQELPIDGN---AAKREEMIKRSGRTTVPQIFIDAQHIGG   64 (82)
T ss_dssp             HHHHHHHHTCCCEEEECTTC---SHHHHHHHHHHSSCCSCEEEETTEEEES
T ss_pred             HHHHHHHcCCCeEEEeccch---HHHHHHHHHHhCCCCCCeEEECCEEEec
Confidence            45678899999999999987   5566677778999999999999999984

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.31  E-value=8e-08  Score=62.98  Aligned_cols=42  Identities=29%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             CCCCCCc-ccee---chhhhccCc---CCCCcEEEECCcHHHHHhhccc
Q psy7674         122 YPDIPGA-HLGI---TSDDLFSLN---KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       122 ~p~i~g~-~~v~---~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +|++||. .+++   +.+|+..+.   ..+++++|||||++|+|+|..|
T Consensus         1 iP~ipG~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l   49 (121)
T d1d7ya2           1 LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATA   49 (121)
T ss_dssp             CGGGTTCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             CccCCCCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHh
Confidence            4788887 4454   455655443   3468999999999999999876

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.28  E-value=1.5e-09  Score=69.75  Aligned_cols=84  Identities=25%  Similarity=0.330  Sum_probs=50.8

Q ss_pred             EeeceEecCCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCC
Q psy7674          44 FIHGKHIDNNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        44 ~i~~~~ig~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      ||+.. +..+.++||+++|||||..++     ++|++.++.+..=...     .+..+.+.. ...+.+--.||. +.+|
T Consensus         4 ~v~~~-i~~~~Vviysk~~Cp~C~~ak-----~ll~~~~~~~~~~~~~-----e~d~~~d~~-~~~~~l~~~~g~-~tvP   70 (105)
T d1ktea_           4 FVNSK-IQPGKVVVFIKPTCPFCRKTQ-----ELLSQLPFKEGLLEFV-----DITATSDTN-EIQDYLQQLTGA-RTVP   70 (105)
T ss_dssp             HHHHH-CCTTCEEEEECSSCHHHHHHH-----HHHHHSCBCTTSEEEE-----EGGGSTTHH-HHHHHHHHHHSC-CCSC
T ss_pred             HHHHH-hccCCEEEEECCCCchHHHHH-----HHHHHhCCccceeeee-----ecccccccH-HHHHHHhhccCC-CcCc
Confidence            34444 667889999999999999999     8999988874110000     011111001 111223334554 4577


Q ss_pred             C--CCCccceechhhhccCc
Q psy7674         124 D--IPGAHLGITSDDLFSLN  141 (164)
Q Consensus       124 ~--i~g~~~v~~~~~~~~~~  141 (164)
                      .  +.| +++++++++..+.
T Consensus        71 qIfi~g-~~IGG~~el~~l~   89 (105)
T d1ktea_          71 RVFIGK-ECIGGCTDLESMH   89 (105)
T ss_dssp             EEEETT-EEEESHHHHHHHH
T ss_pred             EEEECC-EEEecHHHHHHHH
Confidence            6  455 8999999877654

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.28  E-value=1.5e-07  Score=56.24  Aligned_cols=47  Identities=26%  Similarity=0.381  Sum_probs=38.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.||++.+++|..++++.+++.    +.+.+.+|++++|++|++|++||+
T Consensus        21 ak~lL~~~~i~~~~~~v~~~~~~----~~~~~~~~~~tvP~i~i~g~~IGG   67 (74)
T d1nm3a1          21 AKQLLHDKGLSFEEIILGHDATI----VSVRAVSGRTTVPQVFIGGKHIGG   67 (74)
T ss_dssp             HHHHHHHHTCCCEEEETTTTCCH----HHHHHHTCCSSSCEEEETTEEEES
T ss_pred             HHHHHHHcCCCeEEEEccCcHHH----HHHHHHhCCccCCEEEECCEEEEC
Confidence            45688999999999999887553    344457899999999999999984

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=98.27  E-value=6.6e-09  Score=63.64  Aligned_cols=69  Identities=28%  Similarity=0.545  Sum_probs=46.8

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC--CCCccce
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD--IPGAHLG  131 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~--i~g~~~v  131 (164)
                      +++||+++|||||.+++     .+|++.|++|          ..+.++.+..  ..+.+.--+|.+ .+|.  +.| +++
T Consensus         2 ~I~iys~~~Cp~C~~ak-----~~L~~~~i~y----------~~~di~~~~~--~~~~~~~~~g~~-tvP~i~i~~-~~I   62 (82)
T d1fova_           2 NVEIYTKETCPYCHRAK-----ALLSSKGVSF----------QELPIDGNAA--KREEMIKRSGRT-TVPQIFIDA-QHI   62 (82)
T ss_dssp             CEEEEECSSCHHHHHHH-----HHHHHHTCCC----------EEEECTTCSH--HHHHHHHHHSSC-CSCEEEETT-EEE
T ss_pred             cEEEEeCCCCHhHHHHH-----HHHHHcCCCe----------EEEeccchHH--HHHHHHHHhCCC-CCCeEEECC-EEE
Confidence            58999999999999999     8999999998          3355532111  112233336644 5666  344 888


Q ss_pred             echhhhccCc
Q psy7674         132 ITSDDLFSLN  141 (164)
Q Consensus       132 ~~~~~~~~~~  141 (164)
                      ++++++..+.
T Consensus        63 GG~~el~~l~   72 (82)
T d1fova_          63 GGYDDLYALD   72 (82)
T ss_dssp             ESHHHHHHHH
T ss_pred             ecHHHHHHHH
Confidence            8888876554

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.4e-07  Score=57.10  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcC--CCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTG--QKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g--~~~vp~v~i~~~~ig~   52 (164)
                      ++.||+.+++.|+.++|+.+   ...++.+.+++|  .+++|++|++++|||+
T Consensus        24 ~~~lL~~~~I~y~~iDi~~d---~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg   73 (93)
T d1t1va_          24 VTRILDGKRIQYQLVDISQD---NALRDEMRTLAGNPKATPPQIVNGNHYCGD   73 (93)
T ss_dssp             HHHHHHHTTCCCEEEETTSC---HHHHHHHHHHTTCTTCCSCEEEETTEEEEE
T ss_pred             HHHHHHHCCCceEEEEecCc---hhHHHHHHHhccCCCceeEEEEECCEEEec
Confidence            45688999999999999877   666666777765  4699999999999993

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.17  E-value=4.1e-08  Score=58.79  Aligned_cols=67  Identities=30%  Similarity=0.484  Sum_probs=45.4

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC--CCcc
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI--PGAH  129 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i--~g~~  129 (164)
                      .+.++||++++||||.+++     ++|++.|+++.          .+.++.+ .  ..+.+.-.+|.+ .+|.+  .| +
T Consensus         4 ~~~I~iYs~~~C~~C~~ak-----~lL~~~~i~~~----------~~~v~~~-~--~~~~~~~~~~~~-tvP~i~i~g-~   63 (74)
T d1nm3a1           4 QESISIFTKPGCPFCAKAK-----QLLHDKGLSFE----------EIILGHD-A--TIVSVRAVSGRT-TVPQVFIGG-K   63 (74)
T ss_dssp             CCCEEEEECSSCHHHHHHH-----HHHHHHTCCCE----------EEETTTT-C--CHHHHHHHTCCS-SSCEEEETT-E
T ss_pred             cCcEEEEECCCCHHHHHHH-----HHHHHcCCCeE----------EEEccCc-H--HHHHHHHHhCCc-cCCEEEECC-E
Confidence            3568999999999999999     89999999983          3444321 1  122233345543 46663  44 7


Q ss_pred             ceechhhhc
Q psy7674         130 LGITSDDLF  138 (164)
Q Consensus       130 ~v~~~~~~~  138 (164)
                      .+++++|+.
T Consensus        64 ~IGG~~el~   72 (74)
T d1nm3a1          64 HIGGSDDLE   72 (74)
T ss_dssp             EEESHHHHH
T ss_pred             EEEChHHHh
Confidence            888888764

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.12  E-value=6.9e-07  Score=53.13  Aligned_cols=47  Identities=11%  Similarity=0.223  Sum_probs=39.1

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++|+.++|+.+   .+.++.+.+ .|.+++|++|+++++|++
T Consensus        17 ak~~L~~~~i~~~~~~i~~~---~~~~~~~~~-~g~~tvP~i~i~g~~igG   63 (74)
T d1r7ha_          17 TKKALDRAGLAYNTVDISLD---DEARDYVMA-LGYVQAPVVEVDGEHWSG   63 (74)
T ss_dssp             HHHHHHHTTCCCEEEETTTC---HHHHHHHHH-TTCBCCCEEEETTEEEES
T ss_pred             HHHHHHHcCCceEEEEccCC---HHHHHHHHH-hCCCCcCEEEECCEEEeC
Confidence            45688999999999999987   556666654 499999999999998885

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.11  E-value=6.7e-07  Score=55.03  Aligned_cols=51  Identities=18%  Similarity=0.255  Sum_probs=38.5

Q ss_pred             cccccCCCCCccEEEEecCCC---ChhHHHHHHHhh----cCCCCcceEEe-eceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLP---NGAQIQTALFER----TGQKTVPNIFI-HGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~----~g~~~vp~v~i-~~~~ig~   52 (164)
                      ++-||++.+++|+.++++...   +....++++.+.    +|.+|+|+||| +|+|||+
T Consensus        20 AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG   78 (87)
T d1abaa_          20 AKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGG   78 (87)
T ss_dssp             HHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEES
T ss_pred             HHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEEC
Confidence            356889999999999997654   344555555543    57899999999 5899994

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.10  E-value=5.2e-08  Score=64.92  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=24.5

Q ss_pred             echhhhccC---cCCCCcEEEECCcHHHHHhhccc
Q psy7674         132 ITSDDLFSL---NKDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       132 ~~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+.+|+..+   ...+++++|||||++|+|+|..|
T Consensus        20 r~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l   54 (133)
T d1q1ra2          20 RTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA   54 (133)
T ss_dssp             SSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHH
Confidence            355555443   34579999999999999999876

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=5e-08  Score=62.89  Aligned_cols=73  Identities=23%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             ecCCceEEEec-----cCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          50 IDNNSVVIFSK-----SWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        50 ig~d~vvv~~~-----~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      +..+.++||+|     ++||||.+++     ++|++.++++.          .+.++.. .. ..+.+.-.|| .+.+|.
T Consensus        12 i~~~~VvvF~Kgt~~~p~Cp~c~~ak-----~lL~~~~i~~~----------~~~v~~~-~~-~~~~l~~~t~-~~TvPq   73 (109)
T d1wika_          12 TNKASVMLFMKGNKQEAKCGFSKQIL-----EILNSTGVEYE----------TFDILED-EE-VRQGLKTFSN-WPTYPQ   73 (109)
T ss_dssp             HTTSSEEEEESSTTTCCCSSTHHHHH-----HHHHHTCSCEE----------EEESSSC-HH-HHHHHHHHHS-CCSSCE
T ss_pred             HhcCCEEEEeCCCCCCCCChHHHHHH-----HHHHhcCCCce----------EEEeccc-HH-HHHHHHHhcC-CCCCCe
Confidence            45678999998     7799999999     89999999983          3455221 11 1122333455 456777


Q ss_pred             --CCCccceechhhhccCc
Q psy7674         125 --IPGAHLGITSDDLFSLN  141 (164)
Q Consensus       125 --i~g~~~v~~~~~~~~~~  141 (164)
                        |.| +++++++++..+.
T Consensus        74 IFi~g-~~IGG~ddl~~l~   91 (109)
T d1wika_          74 LYVRG-DLVGGLDIVKELK   91 (109)
T ss_dssp             EECSS-SEEECHHHHHHHH
T ss_pred             EEECC-EEEcCHHHHHHHH
Confidence              455 8999999887654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.04  E-value=2e-08  Score=72.72  Aligned_cols=59  Identities=14%  Similarity=0.094  Sum_probs=41.9

Q ss_pred             EEEeceEEEecCCCCCCCCCCCc--cceech---hhhccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         106 TVSAQNFIIAVGGRPTYPDIPGA--HLGITS---DDLFSLNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       106 ~~~~d~liiAtGs~~~~p~i~g~--~~v~~~---~~~~~~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      .+.||++++|||+.+..|.+++.  +...+.   .++.......++++|+|||++|+|+|..|+
T Consensus       137 ~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~  200 (233)
T d1djqa3         137 QYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIE  200 (233)
T ss_dssp             TSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTT
T ss_pred             hhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHH
Confidence            57899999999999877665443  222222   222223344688999999999999998874

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2.2e-06  Score=51.15  Aligned_cols=47  Identities=13%  Similarity=0.321  Sum_probs=38.7

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecC
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDN   52 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~   52 (164)
                      ++.+|++.+++|+.++++.+   .+.++.+.. .|.+++|++++++++|++
T Consensus        17 ak~~L~~~~i~y~~~~i~~~---~~~~~~~~~-~g~~tvP~i~i~~~~i~G   63 (76)
T d1h75a_          17 TKRAMENRGFDFEMINVDRV---PEAAEALRA-QGFRQLPVVIAGDLSWSG   63 (76)
T ss_dssp             HHHHHHHTTCCCEEEETTTC---HHHHHHHHH-TTCCSSCEEEETTEEEES
T ss_pred             HHHHHHhcCceeEEEeecCC---HHHHHHHHh-cCCCCCCEEEECCEEEEC
Confidence            45678999999999999887   556666654 599999999999998874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.68  E-value=7.9e-05  Score=48.13  Aligned_cols=100  Identities=14%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             CccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEec----------CCceEEEeccCCcc--c-ccccchhhHHH
Q psy7674          11 YNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHID----------NNSVVIFSKSWCPF--C-TKAKENNYEKE   77 (164)
Q Consensus        11 ~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig----------~d~vvv~~~~~cp~--~-~~~~~~~~~~~   77 (164)
                      .+-.++-+...+|...+++.+..  +   --.+.|++-++|          +-.++++.+...+.  . .+.....+.+.
T Consensus         7 ~~~~v~~lrtl~Da~~l~~~~~~--~---~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~   81 (121)
T d1d7ya2           7 ATMPVHTLRTLEDARRIQAGLRP--Q---SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARY   81 (121)
T ss_dssp             CSSCEEECCSHHHHHHHHHHCCT--T---CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHH
T ss_pred             CCCCEEEeCCHHHHHHHHHhhhc--C---CeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHH
Confidence            33335555555455555555521  1   235667777777          77788887755431  2 22334456788


Q ss_pred             HhhcCceEEee-EEEEeeCcEEEe-CCeeEEEEeceEEEecC
Q psy7674          78 LEKNKIDYFNA-KAVFVDKHRVKF-AGEERTVSAQNFIIAVG  117 (164)
Q Consensus        78 l~~~gv~~~~~-~~~~~~~~~v~v-~~~~~~~~~d~liiAtG  117 (164)
                      ++++||+++.+ .+..+....+.+ ++  +.+.+|.+++|+|
T Consensus        82 l~~~GV~i~~~~~v~~~~~~~v~l~dg--~~i~~D~vi~a~G  121 (121)
T d1d7ya2          82 HAAQGVDLRFERSVTGSVDGVVLLDDG--TRIAADMVVVGIG  121 (121)
T ss_dssp             HHTTTCEEEESCCEEEEETTEEEETTS--CEEECSEEEECSC
T ss_pred             HHHCCcEEEeCCEEEEEeCCEEEECCC--CEEECCEEEEeeC
Confidence            89999999988 455666667777 55  6899999999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.2e-05  Score=57.06  Aligned_cols=49  Identities=22%  Similarity=0.439  Sum_probs=38.4

Q ss_pred             HHhhcCceEEee-EEEEee--CcEEEe-CCeeEEEEeceEEEecCCCCCCCCCCC
Q psy7674          77 ELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  127 (164)
Q Consensus        77 ~l~~~gv~~~~~-~~~~~~--~~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g  127 (164)
                      .+++.||+++.+ +++.+|  .+++++ +|  +++.||+||+|||++|+.+.+++
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~~V~l~dG--~~i~~d~lViAtG~~~~~~~l~~  144 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTEPNVELAK  144 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEEECCTTHH
T ss_pred             HHHHCCeEEEeCCEEEEeeccCceeeeccc--eeeccceEEEeeeeecchhhhhh
Confidence            356789999988 577776  456777 56  68999999999999887766654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.7e-06  Score=60.32  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCccceechhhhccCcCCCCcEEEECC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAHLGITSDDLFSLNKDPGKVLLVGA  152 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~~v~~~~~~~~~~~~~~~vvViGg  152 (164)
                      .+.+++++.||+++.++       +++.+.   ...||.+++|||+.|+.+++|+.             +.+++++||||
T Consensus       100 ~~~~~~~~~gV~i~l~~-------~Vt~~~---~~~~d~vilAtG~~~~~~~~pg~-------------~~g~~v~vigg  156 (179)
T d1ps9a3         100 YYRRMIEVTGVTLKLNH-------TVTADQ---LQAFDETILASGIPNRALAQPLI-------------DSGKTVHLIGG  156 (179)
T ss_dssp             HHHHHHHHHTCEEEESC-------CCCSSS---SCCSSEEEECCCEECCTTHHHHH-------------TTTCCEEECGG
T ss_pred             HHHHhhhcCCeEEEeCC-------EEcccc---cccceeEEEeecCCCcccccchh-------------ccCCEEEEECC
Confidence            45677888899998753       232222   45799999999999888777763             13678999999


Q ss_pred             cHHHHHh
Q psy7674         153 SYIALEC  159 (164)
Q Consensus       153 G~~g~E~  159 (164)
                      |.+++++
T Consensus       157 gd~a~~~  163 (179)
T d1ps9a3         157 CDVAMEL  163 (179)
T ss_dssp             GTCCSSC
T ss_pred             cHhhhhc
Confidence            9888775

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.54  E-value=1e-05  Score=47.76  Aligned_cols=27  Identities=33%  Similarity=0.749  Sum_probs=25.4

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      .+++|++++||||..++     ++|+++|+++
T Consensus         2 ~v~iYt~~~C~~C~~ak-----~~L~~~~i~~   28 (74)
T d1r7ha_           2 SITLYTKPACVQCTATK-----KALDRAGLAY   28 (74)
T ss_dssp             CEEEEECTTCHHHHHHH-----HHHHHTTCCC
T ss_pred             EEEEEeCCCChhHHHHH-----HHHHHcCCce
Confidence            47899999999999999     8999999998

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.54  E-value=3.7e-05  Score=55.78  Aligned_cols=45  Identities=36%  Similarity=0.541  Sum_probs=38.4

Q ss_pred             ceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCcc
Q psy7674          83 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAH  129 (164)
Q Consensus        83 v~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~~  129 (164)
                      ..++.+.+.+++.+++.+++  +.+.+|.+++|||++|+.|++++.+
T Consensus       150 ~~~~~g~~~~~d~~~v~~~g--~~i~ad~viiAtG~~P~~~~i~~~~  194 (261)
T d1mo9a1         150 EYILNCPAKVIDNHTVEAAG--KVFKAKNLILAVGAGPGTLDVPEQP  194 (261)
T ss_dssp             CEEESSCCEEEETTEEEETT--EEEEBSCEEECCCEECCCCCSTCEE
T ss_pred             eeEeeeEEEEeeeccccccc--ceEeeeeeeeccCCCCCcCcccccc
Confidence            34456788889999998887  7899999999999999999999853

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.51  E-value=1.5e-05  Score=51.40  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=19.1

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l   41 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFF   41 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH
Confidence            468999999999999999876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.49  E-value=2.1e-05  Score=51.09  Aligned_cols=21  Identities=29%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      .+++++|||||++|+|+|..|
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l   49 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAF   49 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHh
Confidence            468999999999999999876

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=1.8e-05  Score=47.00  Aligned_cols=70  Identities=20%  Similarity=0.339  Sum_probs=44.1

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCC-CCcccee
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI-PGAHLGI  132 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i-~g~~~v~  132 (164)
                      .++||+++|||||..++     ++|++.|+++          ..+.++.+.+   +...+..+|.+ .+|.+ -+.+.+.
T Consensus         2 ki~iYs~~~C~~C~~ak-----~~L~~~~i~y----------~~~~i~~~~~---~~~~~~~~g~~-tvP~i~i~~~~i~   62 (76)
T d1h75a_           2 RITIYTRNDCVQCHATK-----RAMENRGFDF----------EMINVDRVPE---AAEALRAQGFR-QLPVVIAGDLSWS   62 (76)
T ss_dssp             CEEEEECTTCHHHHHHH-----HHHHHTTCCC----------EEEETTTCHH---HHHHHHHTTCC-SSCEEEETTEEEE
T ss_pred             EEEEEeCCCCccHHHHH-----HHHHhcCcee----------EEEeecCCHH---HHHHHHhcCCC-CCCEEEECCEEEE
Confidence            47899999999999999     8999999998          3455533111   11223446755 45653 2326665


Q ss_pred             c--hhhhccCcC
Q psy7674         133 T--SDDLFSLNK  142 (164)
Q Consensus       133 ~--~~~~~~~~~  142 (164)
                      +  .+.+..+..
T Consensus        63 Gf~~d~i~~L~~   74 (76)
T d1h75a_          63 GFRPDMINRLHP   74 (76)
T ss_dssp             SCCHHHHGGGSC
T ss_pred             CCCHHHHHHHhc
Confidence            5  355555543

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=8.4e-06  Score=49.59  Aligned_cols=26  Identities=42%  Similarity=0.772  Sum_probs=22.0

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCce
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKID   84 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~   84 (164)
                      .++||++++||||.++|     ++|++.|++
T Consensus         2 kvviysk~~Cp~C~~aK-----~ll~~~~~~   27 (85)
T d1egoa_           2 QTVIFGRSGCPYCVRAK-----DLAEKLSNE   27 (85)
T ss_dssp             EEEEECCTTSTHHHHHH-----HHHHHHHHH
T ss_pred             EEEEEeCCCCHhHHHHH-----HHHHHcCCC
Confidence            47899999999999999     778776544

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=7.9e-06  Score=49.71  Aligned_cols=48  Identities=23%  Similarity=0.412  Sum_probs=28.2

Q ss_pred             ccccCCCC-----CccEEEEecCCCChhHHHHHHHhhcC--CCCcceEEeeceEecCC
Q psy7674           3 DIQTAPPD-----YNFQVVELDKLPNGAQIQTALFERTG--QKTVPNIFIHGKHIDNN   53 (164)
Q Consensus         3 ~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~g--~~~vp~v~i~~~~ig~d   53 (164)
                      +.||++.+     +++..++++..+   +.++.+.+.++  .+|+|+||++|++||+-
T Consensus        18 K~ll~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~   72 (85)
T d1egoa_          18 KDLAEKLSNERDDFQYQYVDIRAEG---ITKEDLQQKAGKPVETVPQIFVDQQHIGGY   72 (85)
T ss_dssp             HHHHHHHHHHHSSCEEEEECHHHHT---CCSHHHHHHTCCCSCCSCEEEETTEEEESS
T ss_pred             HHHHHHcCCCCCCceEEEEecCCCH---HHHHHHHHHhcCCCCCCCEEEECCEEEECH
Confidence            34555533     444444444442   23344444444  47899999999999954

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.23  E-value=0.00033  Score=44.48  Aligned_cols=66  Identities=15%  Similarity=0.128  Sum_probs=44.3

Q ss_pred             CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe---CCeeEEEEeceEEEecC
Q psy7674          52 NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF---AGEERTVSAQNFIIAVG  117 (164)
Q Consensus        52 ~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v---~~~~~~~~~d~liiAtG  117 (164)
                      +..++++.+..  .|...+.....+.+.+++.||+++.+ +++.++......   ++++..+.+|.+++|||
T Consensus        44 g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          44 GAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             ccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            55677776644  33333333445678889999999998 466666544333   34335799999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=3.2e-05  Score=51.02  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=24.1

Q ss_pred             chhhhccCc---CCCCcEEEECCcHHHHHhhccc
Q psy7674         133 TSDDLFSLN---KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       133 ~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      +.+|+..+.   +.+++++|||||++|+|+|..|
T Consensus        23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l   56 (137)
T d1m6ia2          23 KIGDFRSLEKISREVKSITIIGGGFLGSELACAL   56 (137)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHH
Confidence            556655443   3478999999999999999876

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00013  Score=47.40  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=28.9

Q ss_pred             CCCCCCCc-----cceec---hhhhccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         121 TYPDIPGA-----HLGIT---SDDLFSLNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       121 ~~p~i~g~-----~~v~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      +.+++||.     +.+..   ||..+   ...++|+|||||..++|.|..|+
T Consensus         2 R~L~ipge~~~~gkGV~yca~cD~~~---~~gk~V~VvGgG~sA~~~A~~L~   50 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHCDGPL---FKGKRVAVIGGGNSGVEAAIDLA   50 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHHHGGG---GBTCEEEEECCSHHHHHHHHHHH
T ss_pred             CcCCCCCHHHhcCCCEEEEEecChhh---cCCceEEEEeCCHHHHHHHHhhh
Confidence            45677876     23443   34433   34589999999999999998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.07  E-value=0.0014  Score=41.65  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=50.4

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee--Cc--EEEe--CC
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD--KH--RVKF--AG  102 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~--~~--~v~v--~~  102 (164)
                      .+.|++-.||          +.+++++.+..  -|.-.+.....+.+.|++.|++++.+ +++.++  ..  ++++  .+
T Consensus        25 i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~  104 (119)
T d3lada2          25 LGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAE  104 (119)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSS
T ss_pred             EEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECC
Confidence            4566776666          66777777654  23333344455678889999999998 455553  22  3444  23


Q ss_pred             eeEEEEeceEEEecC
Q psy7674         103 EERTVSAQNFIIAVG  117 (164)
Q Consensus       103 ~~~~~~~d~liiAtG  117 (164)
                      ..+++.+|++++|+|
T Consensus       105 ~~~~~~~D~vlvAvG  119 (119)
T d3lada2         105 GEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEEEESEEEECSC
T ss_pred             CCEEEECCEEEEeeC
Confidence            346799999999998

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.03  E-value=0.00017  Score=45.35  Aligned_cols=22  Identities=23%  Similarity=0.099  Sum_probs=19.2

Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ..|+|+|||+|.+|+++|..|+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~   52 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLT   52 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCHHHHHHHHH
Confidence            4589999999999999998764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.96  E-value=0.00064  Score=47.51  Aligned_cols=49  Identities=16%  Similarity=0.300  Sum_probs=41.5

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ...+++..+++++.|+..+.+...+..++  ..+.+|.+++|||++|..||
T Consensus       102 ~~~~~~~~~v~~i~G~~~~~~~~~~~~~~--~~i~a~~viiAtG~~p~~lp  150 (220)
T d1lvla1         102 VAALLKKHGVKVVHGWAKVLDGKQVEVDG--QRIQCEHLLLATGSSSVELP  150 (220)
T ss_dssp             HHHHHHHTTCEEECSCEEEEETTEEEETT--EEEECSEEEECCCEEECCBT
T ss_pred             hhhhhccCceEEEEeeecccCcccccccc--eeEeeceeeEcCCCCccccc
Confidence            44667788999999999999888777666  78999999999999998765

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00018  Score=46.69  Aligned_cols=29  Identities=34%  Similarity=0.328  Sum_probs=22.8

Q ss_pred             chhhhccCcCCCCcEEEECCcHHHHHhhcccC
Q psy7674         133 TSDDLFSLNKDPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       133 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      +||..+   ...++|+|||||.+++|.|..|+
T Consensus        19 ~cD~~~---~~~k~V~VvGgGdsA~e~A~~L~   47 (126)
T d1trba2          19 TSDGFF---YRNQKVAVIGGGNTAVEEALYLS   47 (126)
T ss_dssp             HHHGGG---GTTSEEEEECSSHHHHHHHHHHT
T ss_pred             ecchHH---hCCCEEEEECCCHHHHHHHHHHh
Confidence            455444   34589999999999999998874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.00093  Score=47.26  Aligned_cols=53  Identities=19%  Similarity=0.337  Sum_probs=41.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeC------cEEEe---CCeeEEEEeceEEEecCCCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDK------HRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  125 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~------~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i  125 (164)
                      .+..+++..+++++.+++.+++.      +.+.+   +++...+.+|.+++|||++|+.++.
T Consensus        99 ~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~  160 (233)
T d1xdia1          99 DITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPS  160 (233)
T ss_dssp             HHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGG
T ss_pred             ceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccc
Confidence            45677889999999998888653      34444   5555689999999999999987653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.00021  Score=47.85  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             HHHHhhcCceEEee-EEEEeeCc--EEEeCCeeEEEEeceEEEecCCCCCCCC-CCCc---cceechh-------hhccC
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGA---HLGITSD-------DLFSL  140 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~~--~v~v~~~~~~~~~d~liiAtGs~~~~p~-i~g~---~~v~~~~-------~~~~~  140 (164)
                      ...+++.+++++.+ .+..++..  .+..++  ..+.||.+++|+|.+|..+. -.|.   +.+...+       +++..
T Consensus        59 ~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~--~~i~~D~li~a~G~~~~~~~~~~gl~~~~~i~v~~~~~t~~~~i~ai  136 (167)
T d1xhca1          59 LDWYRKRGIEIRLAEEAKLIDRGRKVVITEK--GEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAI  136 (167)
T ss_dssp             HHHHHHHTEEEECSCCEEEEETTTTEEEESS--CEEECSEEEECCCEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEEC
T ss_pred             HHHHHhccceeeeeccccccccccccccccc--cccccceeEEEEEecCCchhhhcCceeCCceeeccccEecCCCeEEe
Confidence            45677889999887 45666643  333355  57999999999998764221 1111   2222111       11111


Q ss_pred             cCC-CCcEEEECCcHHHHHhhccc
Q psy7674         141 NKD-PGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       141 ~~~-~~~vvViGgG~~g~E~A~~l  163 (164)
                      -+. ..+.+++|++..|.+.|..+
T Consensus       137 GD~~~~~~~~~~~~~~a~~~a~~~  160 (167)
T d1xhca1         137 GDCAEYSGIIAGTAKAAMEQARVL  160 (167)
T ss_dssp             GGGEEBTTBCCCSHHHHHHHHHHH
T ss_pred             eecccCCCeEEChHHHHHHHHHHH
Confidence            110 01234678999999987654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0016  Score=41.26  Aligned_cols=74  Identities=12%  Similarity=0.121  Sum_probs=49.8

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEee---Cc--EEEe-CC
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD---KH--RVKF-AG  102 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~---~~--~v~v-~~  102 (164)
                      .+.|++-++|          +.+++++.+..  -|...+.....+.+.+++.||+++.++ +..+.   ..  .+.+ ++
T Consensus        24 vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g  103 (116)
T d1gesa2          24 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG  103 (116)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS
T ss_pred             EEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCC
Confidence            5566666566          56777777644  334444445566788999999999984 44442   22  3444 45


Q ss_pred             eeEEEEeceEEEecC
Q psy7674         103 EERTVSAQNFIIAVG  117 (164)
Q Consensus       103 ~~~~~~~d~liiAtG  117 (164)
                        +.+.+|.+++|||
T Consensus       104 --~~~~~D~vi~a~G  116 (116)
T d1gesa2         104 --RSETVDCLIWAIG  116 (116)
T ss_dssp             --CEEEESEEEECSC
T ss_pred             --CEEEcCEEEEecC
Confidence              6899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.82  E-value=0.0021  Score=40.57  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=41.5

Q ss_pred             ceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee---Cc--EEEe-CCeeEEEEeceEEEecC
Q psy7674          54 SVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KH--RVKF-AGEERTVSAQNFIIAVG  117 (164)
Q Consensus        54 ~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~--~v~v-~~~~~~~~~d~liiAtG  117 (164)
                      .+.++.+..  .|...+.....+.+.+++.||+++.+ .+..+.   ..  .+.. ++  ..+.+|.+++|||
T Consensus        46 ~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g--~~i~~D~Vi~a~G  116 (117)
T d1feca2          46 QVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLAIG  116 (117)
T ss_dssp             EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             ccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCC--CEEEcCEEEEecC
Confidence            455665533  34434444556778899999999988 455553   11  2444 55  6899999999998

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.001  Score=46.68  Aligned_cols=54  Identities=37%  Similarity=0.637  Sum_probs=44.0

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP  126 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~i~  126 (164)
                      .+...+++.+|+++.++..+.+.+.+.+   .+....+.++.++++||++|+.+++.
T Consensus       106 g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~  162 (235)
T d1h6va1         106 GYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIR  162 (235)
T ss_dssp             HHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSE
T ss_pred             hhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEEe
Confidence            4566788899999999999988877666   44445789999999999999987753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.79  E-value=0.0024  Score=40.73  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             eEEeeceEec----------CCceEEEeccCCc-ccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEeCCeeEEEEe
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSWCP-FCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKFAGEERTVSA  109 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~cp-~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v~~~~~~~~~  109 (164)
                      .+.|++-++|          +-+++++.+.... ...+.....+.+.+++.||+++.+ ++..++.+.+..++  ..+.+
T Consensus        35 vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v~~~~--~~i~~  112 (122)
T d1xhca2          35 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNS--GFIEG  112 (122)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETT--EEEEC
T ss_pred             EEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEeCC--CEEEC
Confidence            4566776677          6677777764422 222223345677889999999988 56667666665566  68999


Q ss_pred             ceEEEecCC
Q psy7674         110 QNFIIAVGG  118 (164)
Q Consensus       110 d~liiAtGs  118 (164)
                      |.+++|||.
T Consensus       113 D~vi~a~Gv  121 (122)
T d1xhca2         113 KVKICAIGI  121 (122)
T ss_dssp             SCEEEECCE
T ss_pred             CEEEEEEEe
Confidence            999999993

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00029  Score=48.57  Aligned_cols=22  Identities=23%  Similarity=0.140  Sum_probs=19.7

Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++|+|||||+.|+++|..|
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~l   62 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINA   62 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHH
T ss_pred             CCCcEEEEECccHHHHHHHHHH
Confidence            4569999999999999999876

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.003  Score=41.05  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=54.1

Q ss_pred             ChhHHHHHHHhhcCCCCcceEEeeceEec--------------CCceEEEeccCCc---ccccccchhhHHHHhhcCceE
Q psy7674          23 NGAQIQTALFERTGQKTVPNIFIHGKHID--------------NNSVVIFSKSWCP---FCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        23 ~~~~~~~~l~~~~g~~~vp~v~i~~~~ig--------------~d~vvv~~~~~cp---~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      |...+++.+.+  +   --.+.|++-++|              +-.++++.+...+   .........+.+.+++.||++
T Consensus        26 d~~~l~~~~~~--~---k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~  100 (137)
T d1m6ia2          26 DFRSLEKISRE--V---KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV  100 (137)
T ss_dssp             HHHHHHHHHHH--C---SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHHHHHhhc--C---CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEE
Confidence            33455555532  1   235566776666              3356666654433   222223345667889999999


Q ss_pred             Eee-EEEEee--Cc--EEEe-CCeeEEEEeceEEEecC
Q psy7674          86 FNA-KAVFVD--KH--RVKF-AGEERTVSAQNFIIAVG  117 (164)
Q Consensus        86 ~~~-~~~~~~--~~--~v~v-~~~~~~~~~d~liiAtG  117 (164)
                      +.+ .+..++  ..  .+++ +|  +.+.+|.+++|||
T Consensus       101 ~~~~~V~~i~~~~~~~~v~l~~G--~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         101 MPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVG  136 (137)
T ss_dssp             ECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCC
T ss_pred             EeCCEEEEEEecCCEEEEEECCC--CEEECCEEEEeec
Confidence            998 455553  33  3444 55  7899999999998

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.41  E-value=0.00077  Score=45.08  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=18.6

Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++|+|||||++|+|+|..+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a   64 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSA   64 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCChhHHHHHHHH
Confidence            3458999999999999999653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.27  E-value=0.0025  Score=44.03  Aligned_cols=53  Identities=28%  Similarity=0.443  Sum_probs=39.5

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCC--CCCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPT--YPDI  125 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~--~p~i  125 (164)
                      .+..+++..+++++.+.+.+.++.+...   ......+.+|++|+|||++|.  .|..
T Consensus        98 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~  155 (221)
T d1dxla1          98 GIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFT  155 (221)
T ss_dssp             HHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECC
T ss_pred             HHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccCccccC
Confidence            3456778889999999888887766554   333467899999999998763  4543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.19  E-value=0.0017  Score=43.15  Aligned_cols=51  Identities=22%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             HHHhhcCceEEeeEEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCCCCCc
Q psy7674          76 KELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA  128 (164)
Q Consensus        76 ~~l~~~gv~~~~~~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~i~g~  128 (164)
                      ..+...++.+..++...++.  +.+.. ++  +.++||++++|||++|+.+.+++.
T Consensus        63 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~i~~D~li~atG~~~~~~~i~~~  116 (186)
T d1fcda1          63 DGLRAHGIQVVHDSATGIDPDKKLVKTAGG--AEFGYDRCVVAPGIELIYDKIEQR  116 (186)
T ss_dssp             HHHHTTTEEEECCCEEECCTTTTEEEETTS--CEEECSEEEECCCEEECCTTSTEE
T ss_pred             hhccccceeEeeeeeEeeeeccceeecccc--eeeccceEEEEeccccchhhhhhh
Confidence            34556788888887766653  34444 44  789999999999999988877764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.18  E-value=0.0043  Score=41.77  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             HhhcCceEEee-EEEEeeC--cEEEe-CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          78 LEKNKIDYFNA-KAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        78 l~~~gv~~~~~-~~~~~~~--~~v~v-~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ....+++++.+ .+..++.  ..+.+ ++  +.+.||.+++|||++|+...
T Consensus        65 ~~~~~i~~~~~~~v~~i~~~~~~~~~~~g--~~~~~D~vi~a~G~~p~~~~  113 (183)
T d1d7ya1          65 KRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPRAVL  113 (183)
T ss_dssp             GGSTTCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCEE
T ss_pred             hhcCCeEEEEeccccccccccceeEecCC--cEeeeeeEEEEEEEEccccc
Confidence            44568999887 4566653  45555 55  78999999999999987543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.14  E-value=0.023  Score=35.56  Aligned_cols=77  Identities=6%  Similarity=0.157  Sum_probs=48.0

Q ss_pred             ceEEeeceEec----------CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEeeE-EEEeeC----cE--EEe-
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNAK-AVFVDK----HR--VKF-  100 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~----~~--v~v-  100 (164)
                      -.+.|++-.+|          +..+.++.....+  .-.+.....+.+.+++.+|+++.+. +..+..    ..  +.. 
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~  103 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAM  103 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEE
Confidence            34556666666          6666776664322  2222234456778899999999984 445531    11  211 


Q ss_pred             -CCeeEEEEeceEEEecC
Q psy7674         101 -AGEERTVSAQNFIIAVG  117 (164)
Q Consensus       101 -~~~~~~~~~d~liiAtG  117 (164)
                       .++++.+.+|.+++|+|
T Consensus       104 ~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2         104 TPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ETTEEEEEECSCEEECCC
T ss_pred             eCCCCEEEEcCEEEEEEC
Confidence             34447899999999998

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.14  E-value=0.0065  Score=41.42  Aligned_cols=49  Identities=24%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             HHHHhhcCceEEee-EEEEeeC--cEEEe----CCeeEEEEeceEEEecCCCCCCC
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDK--HRVKF----AGEERTVSAQNFIIAVGGRPTYP  123 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~--~~v~v----~~~~~~~~~d~liiAtGs~~~~p  123 (164)
                      .+.+++.||+++.+ ++..++.  +.+++    ++++..+.||.+++|+|+.|..+
T Consensus        63 ~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~  118 (198)
T d1nhpa1          63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL  118 (198)
T ss_dssp             HHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecc
Confidence            46788899999877 5666763  45554    44446789999999999987643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.018  Score=36.50  Aligned_cols=76  Identities=14%  Similarity=0.220  Sum_probs=47.4

Q ss_pred             eEEeeceEec----------CCceEEEeccC-CcccccccchhhHHHHhhcCceEEee-EEEEe---eC---cE--EEe-
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW-CPFCTKAKENNYEKELEKNKIDYFNA-KAVFV---DK---HR--VKF-  100 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~-cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~---~~---~~--v~v-  100 (164)
                      .+.|++-.||          +.+++++.++. .|...+.....+.+.+++.||+++.+ ++..+   +.   ..  +.+ 
T Consensus        23 vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~  102 (122)
T d1h6va2          23 TLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAK  102 (122)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEE
T ss_pred             EEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEE
Confidence            4556666566          55667766643 34554445556778899999999988 34333   21   12  222 


Q ss_pred             ---CCeeEEEEeceEEEecC
Q psy7674         101 ---AGEERTVSAQNFIIAVG  117 (164)
Q Consensus       101 ---~~~~~~~~~d~liiAtG  117 (164)
                         +++.....+|.+++|+|
T Consensus       103 ~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2         103 STNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             CTTSCEEEEEEESEEECCCC
T ss_pred             ECCCCcEEEEECCEEEEEeC
Confidence               12223567999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.92  E-value=0.0077  Score=38.87  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             eEEeeceEec----------CCceEEEeccCCc---ccccccchhhHHHHhhcCceEEee-EEEEee----CcE---EEe
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSWCP---FCTKAKENNYEKELEKNKIDYFNA-KAVFVD----KHR---VKF  100 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~cp---~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~----~~~---v~v  100 (164)
                      .+.|++-++|          +.++.++.+..-+   ...+.....+.+.++++||+++.+ ++..++    ...   +.+
T Consensus        38 v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~  117 (133)
T d1q1ra2          38 LVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLC  117 (133)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEE
T ss_pred             EEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEEC
Confidence            5666776677          6677777764322   222222345667889999999988 455553    222   333


Q ss_pred             -CCeeEEEEeceEEEecC
Q psy7674         101 -AGEERTVSAQNFIIAVG  117 (164)
Q Consensus       101 -~~~~~~~~~d~liiAtG  117 (164)
                       ++  ..+.+|.+++|+|
T Consensus       118 ~~G--~~i~~D~vi~a~G  133 (133)
T d1q1ra2         118 EDG--TRLPADLVIAGIG  133 (133)
T ss_dssp             TTS--CEEECSEEEECCC
T ss_pred             CCC--CEEECCEEEEeeC
Confidence             55  6899999999998

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.86  E-value=0.0017  Score=42.22  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=19.5

Q ss_pred             CCCcEEEECCcHHHHHhhcccC
Q psy7674         143 DPGKVLLVGASYIALECAGCDK  164 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l~  164 (164)
                      ..++|+|||||..++|.|.+|+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~   54 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLT   54 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHT
T ss_pred             CCCEEEEEcCchHHHHHHHHHh
Confidence            3489999999999999999875

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.74  E-value=0.01  Score=37.95  Aligned_cols=77  Identities=14%  Similarity=0.137  Sum_probs=49.7

Q ss_pred             ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEee--Cc--EEEe---
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KH--RVKF---  100 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~--~v~v---  100 (164)
                      -.+.|++-.||          +-+++++....  .|...+.....+.+.+++.|++++.+. +..+.  ..  .+.+   
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~  107 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGA  107 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeC
Confidence            35566776676          66677776543  344444444556788899999999884 44442  22  2333   


Q ss_pred             CCeeEEEEeceEEEecC
Q psy7674         101 AGEERTVSAQNFIIAVG  117 (164)
Q Consensus       101 ~~~~~~~~~d~liiAtG  117 (164)
                      ++..+.+.+|.+++|+|
T Consensus       108 ~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2         108 NAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             SCCSSCEEESCEEECCC
T ss_pred             CCCeEEEEcCEEEEecC
Confidence            23234799999999998

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.62  E-value=0.0021  Score=45.38  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             CCCCcEEEECCcHHHHHhhccc
Q psy7674         142 KDPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       142 ~~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..+++|+|||||+.|+.+|..|
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l   68 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVL   68 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHH
T ss_pred             cCCceEEEEcccHHHHHHHHHH
Confidence            4569999999999999999876

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0011  Score=40.93  Aligned_cols=29  Identities=31%  Similarity=0.622  Sum_probs=23.9

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      -..+++|+++|||+|...+     ..|++.+.++
T Consensus        16 ~p~i~lft~~~C~~C~~a~-----~~L~~~~~~~   44 (100)
T d1wjka_          16 LPVLTLFTKAPCPLCDEAK-----EVLQPYKDRF   44 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHH-----HHTSTTSSSS
T ss_pred             CCEEEEEECCCCCChHHHH-----HHHHHhhhhc
Confidence            3468889999999999998     7777777766

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.50  E-value=0.036  Score=34.49  Aligned_cols=75  Identities=20%  Similarity=0.268  Sum_probs=48.0

Q ss_pred             ceEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEee--CcE--EEe--C
Q psy7674          41 PNIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KHR--VKF--A  101 (164)
Q Consensus        41 p~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~~--v~v--~  101 (164)
                      -.++|++-++|          +-+++++.+..  .|...+.....+.+.+++.||+++.+. +..++  ...  +.+  +
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~  103 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEAN  103 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEET
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeC
Confidence            35666776666          66777777644  333333334456788899999999984 45553  222  333  5


Q ss_pred             CeeEEEEeceEEEe
Q psy7674         102 GEERTVSAQNFIIA  115 (164)
Q Consensus       102 ~~~~~~~~d~liiA  115 (164)
                      ++...+.+|.+++.
T Consensus       104 g~~~~i~~D~Vlvs  117 (117)
T d1ebda2         104 GETKTIDADYVLVT  117 (117)
T ss_dssp             TEEEEEEESEEEEC
T ss_pred             CCEEEEEeEEEEEC
Confidence            55567999998873

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0049  Score=42.52  Aligned_cols=49  Identities=29%  Similarity=0.618  Sum_probs=38.5

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ....++..+|+++.|++.+...+.++.  ..  ..+..+.+++|||++|..|.
T Consensus        97 ~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~--~~~~~~~~~iatG~~p~vp~  147 (221)
T d3grsa1          97 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG--KKYTAPHILIATGGMPSTPH  147 (221)
T ss_dssp             HHHHHHHTTCEEEESCCEECSCSSCEEEETT--EEEECSCEEECCCEEECCCC
T ss_pred             hhhhhccCceEEEEEeeeeccccceeeeeec--cccccceeEEecCccccCCC
Confidence            345678899999999888876554444  34  67889999999999998875

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.26  E-value=0.0031  Score=37.88  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=22.5

Q ss_pred             EEEeccC----CcccccccchhhHHHHhhcCceEE
Q psy7674          56 VIFSKSW----CPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        56 vv~~~~~----cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      .||+++.    ||||.++|     ++|+++|+++.
T Consensus         3 ~Iy~~~~~~~~C~~C~~AK-----~lL~~~~i~y~   32 (87)
T d1abaa_           3 KVYGYDSNIHKCGPCDNAK-----RLLTVKKQPFE   32 (87)
T ss_dssp             EEEECCTTTSCCHHHHHHH-----HHHHHTTCCEE
T ss_pred             EEEEeCCCCCCChhHHHHH-----HHHHHcCCCce
Confidence            4787765    99999999     99999999983

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.048  Score=34.32  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEee----CcEEEe----
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD----KHRVKF----  100 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~----~~~v~v----  100 (164)
                      .++|++-.+|          +..++++.+..  -|...+.-...+.+.|++.||+++.+. +..+.    ...+.+    
T Consensus        26 ~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~  105 (122)
T d1v59a2          26 LTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVED  105 (122)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEe
Confidence            4555666666          77787877644  345555555667788999999999884 44442    223332    


Q ss_pred             --CCeeEEEEeceEEEe
Q psy7674         101 --AGEERTVSAQNFIIA  115 (164)
Q Consensus       101 --~~~~~~~~~d~liiA  115 (164)
                        .++.+.+.+|.+++|
T Consensus       106 ~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         106 TKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             TTTTEEEEEEESEEEEC
T ss_pred             CCCCCeEEEEeCEEEEC
Confidence              233457899999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.13  E-value=0.029  Score=35.40  Aligned_cols=74  Identities=18%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEeeC--c--EEEe----
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVDK--H--RVKF----  100 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~--~--~v~v----  100 (164)
                      .+.|++-.+|          +.+++++.+..  .|...+.....+.+.|++.||+++.+. +..++.  .  ++.+    
T Consensus        28 ~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~  107 (123)
T d1dxla2          28 LVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSA  107 (123)
T ss_dssp             EEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESS
T ss_pred             EEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECC
Confidence            3455666666          77788887644  334334444456788899999999884 555642  1  3333    


Q ss_pred             CCeeEEEEeceEEEe
Q psy7674         101 AGEERTVSAQNFIIA  115 (164)
Q Consensus       101 ~~~~~~~~~d~liiA  115 (164)
                      +++...+.+|++++|
T Consensus       108 ~g~~~~i~~D~vLvA  122 (123)
T d1dxla2         108 GGEQTIIEADVVLVS  122 (123)
T ss_dssp             SCCCEEEEESEEECC
T ss_pred             CCeEEEEEcCEEEEc
Confidence            333456899999987

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.13  E-value=0.084  Score=33.13  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             CCChhHHHHHHHhhcCCCCcceEEeeceEec----------CCceEEEeccCCc---ccccccchhhHHHHhhcCceEEe
Q psy7674          21 LPNGAQIQTALFERTGQKTVPNIFIHGKHID----------NNSVVIFSKSWCP---FCTKAKENNYEKELEKNKIDYFN   87 (164)
Q Consensus        21 ~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig----------~d~vvv~~~~~cp---~~~~~~~~~~~~~l~~~gv~~~~   87 (164)
                      .+|...+++.+..   ...--.+.|++-++|          +-+++++.+..-+   +..+.....+.+.+++.|++++.
T Consensus        15 ~~da~~i~~~~~~---~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~   91 (123)
T d1nhpa2          15 RQWAIKLKQKTVD---PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT   91 (123)
T ss_dssp             HHHHHHHHHHHTC---TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEE
T ss_pred             HHHHHHHHHHhhc---cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEe
Confidence            3334455554432   222234666777777          6678888775432   22333345667888999999999


Q ss_pred             e-EEEEeeCc----EEEeCCeeEEEEeceEEEe
Q psy7674          88 A-KAVFVDKH----RVKFAGEERTVSAQNFIIA  115 (164)
Q Consensus        88 ~-~~~~~~~~----~v~v~~~~~~~~~d~liiA  115 (164)
                      + ++..++..    .+..++  ..+++|.+++|
T Consensus        92 ~~~v~~i~~~~~~~~v~~dg--~~i~~D~vi~a  122 (123)
T d1nhpa2          92 GETVERYEGDGRVQKVVTDK--NAYDADLVVVA  122 (123)
T ss_dssp             SCCEEEEECSSBCCEEEESS--CEEECSEEEEC
T ss_pred             CceEEEEEcCCCEEEEEeCC--CEEECCEEEEE
Confidence            8 45555421    222266  68999999987

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.047  Score=35.70  Aligned_cols=45  Identities=16%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             hhHHHHhhcCceEEee-EEEEeeCcEEEe--CCeeEEEEeceEEEecC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVDKHRVKF--AGEERTVSAQNFIIAVG  117 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~~~~v~v--~~~~~~~~~d~liiAtG  117 (164)
                      .....++..+++++.+ .+..++.+-+.+  ++++..+.+|.+|+|+|
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCC
Confidence            3456788899999887 455677665444  66666799999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.088  Score=33.10  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=46.0

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEeeE-EEEee--Cc--EEEe----
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNAK-AVFVD--KH--RVKF----  100 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~--~~--~v~v----  100 (164)
                      .+.|++-++|          +-+++++.+..  .|.-.+.....+.+.+++.||+++.+. ++.+.  ..  ++++    
T Consensus        25 vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~  104 (125)
T d3grsa2          25 SVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAV  104 (125)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECC
T ss_pred             EEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEcc
Confidence            4555665566          56677777654  233233334556788899999999984 44452  22  2222    


Q ss_pred             CC----eeEEEEeceEEEecC
Q psy7674         101 AG----EERTVSAQNFIIAVG  117 (164)
Q Consensus       101 ~~----~~~~~~~d~liiAtG  117 (164)
                      .+    ......+|.+++|||
T Consensus       105 ~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         105 PGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTSCCEEEEEEEESEEEECSC
T ss_pred             CCcCcCccccccCCEEEEEeC
Confidence            11    123567999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.17  E-value=0.097  Score=32.45  Aligned_cols=61  Identities=16%  Similarity=0.250  Sum_probs=39.2

Q ss_pred             ceEEEeccCC--cccccccchhhHHHHhhcCceEEee-EEEEee---Cc--EEEe-CCeeEEEEeceEEEec
Q psy7674          54 SVVIFSKSWC--PFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KH--RVKF-AGEERTVSAQNFIIAV  116 (164)
Q Consensus        54 ~vvv~~~~~c--p~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~--~v~v-~~~~~~~~~d~liiAt  116 (164)
                      +++++.+..-  |.........+.+.|++.||+++.+ .+..++   ..  .+++ +|  +.+.+|.+++|.
T Consensus        48 ~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G--~~i~~D~Vi~AI  117 (117)
T d1aoga2          48 QVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESG--KKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS--CEEEESEEEECS
T ss_pred             EEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCC--cEEEeCEEEEeC
Confidence            4666665442  2222333455678899999999988 455553   22  3444 55  679999999883

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.08  E-value=0.00092  Score=40.82  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             ceEEEeccCCc------ccccccchhhHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCC-CCCCCCC-
Q psy7674          54 SVVIFSKSWCP------FCTKAKENNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDI-  125 (164)
Q Consensus        54 ~vvv~~~~~cp------~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs-~~~~p~i-  125 (164)
                      .+.||+.++|.      +|.+.+     .+|+++||+|          +.+.++.+..  ..+.+.--+|. .+.+|.| 
T Consensus         3 ~i~vy~ts~~~~~~~~~~~~r~~-----~lL~~~~I~y----------~~iDi~~d~~--~~~~~~~~~g~~~~t~Pqif   65 (93)
T d1t1va_           3 GLRVYSTSVTGSREIKSQQSEVT-----RILDGKRIQY----------QLVDISQDNA--LRDEMRTLAGNPKATPPQIV   65 (93)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHH-----HHHHHTTCCC----------EEEETTSCHH--HHHHHHHHTTCTTCCSCEEE
T ss_pred             CEEEEEccCcCChhhHHHHHHHH-----HHHHHCCCce----------EEEEecCchh--HHHHHHHhccCCCceeEEEE
Confidence            47899999995      888888     8999999998          3455522101  11112222554 3345553 


Q ss_pred             -CCccceechhhhccCcC
Q psy7674         126 -PGAHLGITSDDLFSLNK  142 (164)
Q Consensus       126 -~g~~~v~~~~~~~~~~~  142 (164)
                       .| +++++++++..+.+
T Consensus        66 v~~-~~iGg~del~~~~e   82 (93)
T d1t1va_          66 NGN-HYCGDYELFVEAVE   82 (93)
T ss_dssp             ETT-EEEEEHHHHHHHHH
T ss_pred             ECC-EEEecHHHHHHHHH
Confidence             44 88999888876543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.93  E-value=0.04  Score=37.51  Aligned_cols=52  Identities=17%  Similarity=0.388  Sum_probs=39.3

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEe---CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v---~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      .+..+++..+|+++.+...+.+......   ......+.++.+++|||++|..++
T Consensus       104 ~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~  158 (229)
T d3lada1         104 GVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIP  158 (229)
T ss_dssp             HHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCT
T ss_pred             hHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCccccccc
Confidence            4566778889999999888776544443   333467889999999999987765

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.27  E-value=0.02  Score=33.69  Aligned_cols=17  Identities=29%  Similarity=0.890  Sum_probs=14.5

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .+.+|..+|||+|....
T Consensus         4 ~v~~F~a~wC~~C~~~~   20 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAI   20 (85)
T ss_dssp             CEEEESCSSSCCSTTHH
T ss_pred             EEEEEECCCCcchHHHH
Confidence            46779999999998876

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.04  E-value=0.099  Score=36.14  Aligned_cols=45  Identities=18%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             hHHHHhhcCceEEee-EEEEe--eCcE---EEe-CCeeEEEEeceEEEecCCCC
Q psy7674          74 YEKELEKNKIDYFNA-KAVFV--DKHR---VKF-AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~-~~~~~--~~~~---v~v-~~~~~~~~~d~liiAtGs~~  120 (164)
                      +.+.+++.|++++.+ +++.+  +...   +.+ ++  +.+.+|++|+|||+..
T Consensus       116 L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         116 LLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--EVLETNHVVIAVGGKS  167 (251)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--CEEECSCEEECCCCSS
T ss_pred             HHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCC--CeEecCeEEEccCCcc
Confidence            445667889999887 45544  3333   223 44  6899999999999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.96  E-value=0.12  Score=34.89  Aligned_cols=49  Identities=35%  Similarity=0.518  Sum_probs=37.4

Q ss_pred             hhHHHHhhcCceEEeeEEEEeeCcEEEe--CCeeEEEEeceEEEecCCCCC
Q psy7674          73 NYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPT  121 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~~~~~~~~~~v~v--~~~~~~~~~d~liiAtGs~~~  121 (164)
                      .++.+++..+++++.+++.+.+.....+  ......+..+.+++|+|++|.
T Consensus        96 ~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~  146 (223)
T d1ebda1          96 GVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI  146 (223)
T ss_dssp             HHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEEC
T ss_pred             hHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCcc
Confidence            3456677889999999998887765554  333467999999999987664

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.82  E-value=0.57  Score=29.98  Aligned_cols=63  Identities=13%  Similarity=0.139  Sum_probs=38.6

Q ss_pred             CCcceEEe---eceEec----------CCceEEEeccCCc--ccccccchhhHHHHhhcCceEEee-EEEEeeCcEEEe
Q psy7674          38 KTVPNIFI---HGKHID----------NNSVVIFSKSWCP--FCTKAKENNYEKELEKNKIDYFNA-KAVFVDKHRVKF  100 (164)
Q Consensus        38 ~~vp~v~i---~~~~ig----------~d~vvv~~~~~cp--~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~v~v  100 (164)
                      ..-..+.|   +|.++|          +.++++.+...-+  .........+.+.|++.||+++.+ ++..++...+.+
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l  115 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEI  115 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEE
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcceEE
Confidence            33445555   666677          7788888764422  222222344567788999999988 455666655544

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.74  E-value=0.023  Score=33.19  Aligned_cols=16  Identities=38%  Similarity=0.995  Sum_probs=13.8

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      +++|.++|||+|+...
T Consensus         6 v~~F~a~wC~~C~~~~   21 (85)
T d1fo5a_           6 IELFTSPMCPHCPAAK   21 (85)
T ss_dssp             EEEEECCCSSCCCTHH
T ss_pred             EEEEECCCCcChHhhh
Confidence            5679999999998765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.55  E-value=0.024  Score=39.44  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=17.9

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..++|+|||||++++.+|..|
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~l   58 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARIL   58 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHH
T ss_pred             cCceEEEECCCchhHhhhhhh
Confidence            358999999999999998643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.52  E-value=0.18  Score=31.25  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             eEEeeceEec----------CCceEEEeccC--CcccccccchhhHHHHhhcCceEEee-EEEEee---CcE--EEe-CC
Q psy7674          42 NIFIHGKHID----------NNSVVIFSKSW--CPFCTKAKENNYEKELEKNKIDYFNA-KAVFVD---KHR--VKF-AG  102 (164)
Q Consensus        42 ~v~i~~~~ig----------~d~vvv~~~~~--cp~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~---~~~--v~v-~~  102 (164)
                      .+.|++-.+|          +.+++++.+..  .|...+.....+.+.+++.||+++.+ .++.++   ...  +++ +|
T Consensus        25 v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G  104 (117)
T d1onfa2          25 IGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG  104 (117)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTS
T ss_pred             EEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCC
Confidence            4566666666          66788887654  23333444456677889999999988 455553   222  444 45


Q ss_pred             eeEEE-EeceEEEe
Q psy7674         103 EERTV-SAQNFIIA  115 (164)
Q Consensus       103 ~~~~~-~~d~liiA  115 (164)
                        +.+ .||.+++|
T Consensus       105 --~~~~~~D~Vi~A  116 (117)
T d1onfa2         105 --RIYEHFDHVIYC  116 (117)
T ss_dssp             --CEEEEESEEEEC
T ss_pred             --CEEEeCCEEEEe
Confidence              344 68999988

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.35  E-value=0.026  Score=34.08  Aligned_cols=17  Identities=12%  Similarity=0.266  Sum_probs=14.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .+++|..+|||+|....
T Consensus        18 ~i~~F~s~~C~~C~~~~   34 (96)
T d1hyua4          18 EFETYYSLSCHNCPDVV   34 (96)
T ss_dssp             EEEEEECTTCSSHHHHH
T ss_pred             EEEEEECCCCcchHHHH
Confidence            46779999999998765

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.33  E-value=0.15  Score=35.56  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             hHHHHhhcCceEEeeE-EEEee---C-c--EEEe--CCeeEEEEeceEEEecCCCC
Q psy7674          74 YEKELEKNKIDYFNAK-AVFVD---K-H--RVKF--AGEERTVSAQNFIIAVGGRP  120 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~-~~~~~---~-~--~v~v--~~~~~~~~~d~liiAtGs~~  120 (164)
                      +.+.+++.|++++.++ +..+.   . .  ...+  ++  ..+.+|+||+|||+.+
T Consensus       115 L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~--~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         115 LKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS--TQWQCKNLIVATGGLS  168 (253)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT--EEEEESEEEECCCCSS
T ss_pred             HHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCC--EEEEeCEEEEcCCccc
Confidence            4556677899999874 44442   1 1  1222  45  6899999999999874

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.83  E-value=0.033  Score=38.95  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=18.3

Q ss_pred             CCCcEEEECCcHHHHHhhccc
Q psy7674         143 DPGKVLLVGASYIALECAGCD  163 (164)
Q Consensus       143 ~~~~vvViGgG~~g~E~A~~l  163 (164)
                      ..++|+|||||++++.+|..|
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l   58 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARIL   58 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHH
T ss_pred             cCceEEEECCchhHHHHHHHH
Confidence            368999999999999999654

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.21  E-value=0.052  Score=32.98  Aligned_cols=43  Identities=19%  Similarity=0.291  Sum_probs=28.2

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      ++.+|++....|....++.+.+.   ...|.+..+.+ +|.++|+|+
T Consensus        33 a~~~L~~~~~~~~~~~v~vd~~~---~~~l~~~y~~~-VPvl~idg~   75 (100)
T d1wjka_          33 AKEVLQPYKDRFILQEVDITLPE---NSTWYERYKFD-IPVFHLNGQ   75 (100)
T ss_dssp             HHHHTSTTSSSSEEEEEETTSST---THHHHHHSSSS-CSEEEESSS
T ss_pred             HHHHHHHhhhhcceEEEeccccc---CHHHHHHhccc-CCceeecCc
Confidence            45677887777766666554332   13455556766 999999886

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=91.05  E-value=0.053  Score=31.31  Aligned_cols=26  Identities=15%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             eEEEeccCCcccccccchhhHHHHhh-cCceE
Q psy7674          55 VVIFSKSWCPFCTKAKENNYEKELEK-NKIDY   85 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~~~~~~~~l~~-~gv~~   85 (164)
                      +++|++++|+.|..++     +.+.+ .++++
T Consensus         2 ltLyt~~~C~LCe~A~-----~~l~~~~~~~~   28 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAV-----EALAQARAGAF   28 (75)
T ss_dssp             EEEEECSSCHHHHHHH-----HHHHHTTCCCE
T ss_pred             EEEECCCCccHHHHHH-----HHHHhccCCcE
Confidence            6899999999999887     54444 56766

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.48  E-value=0.052  Score=32.93  Aligned_cols=16  Identities=31%  Similarity=0.945  Sum_probs=13.1

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      +++|..+|||+|+..+
T Consensus        19 i~~F~a~wC~~C~~~~   34 (107)
T d1a8la2          19 ILVFVTPTCPYCPLAV   34 (107)
T ss_dssp             EEEEECSSCTTHHHHH
T ss_pred             EEEEEcCccccchhhC
Confidence            4459999999998765

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=90.01  E-value=0.052  Score=33.69  Aligned_cols=28  Identities=25%  Similarity=0.678  Sum_probs=24.6

Q ss_pred             ceEEEeccCCcccccccchhhHHHHhhcCceEE
Q psy7674          54 SVVIFSKSWCPFCTKAKENNYEKELEKNKIDYF   86 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~~   86 (164)
                      .+++|+..+||||.+.+     -.|..+|+++.
T Consensus         2 ~i~LY~~~~sP~~~kvr-----~~L~~k~l~~~   29 (113)
T d1z9ha2           2 QLTLYQYKTCPFCSKVR-----AFLDFHALPYQ   29 (113)
T ss_dssp             EEEEEECTTCHHHHHHH-----HHHHHTTCCEE
T ss_pred             EEEEEcCCCChHHHHHH-----HHHHHcCCeeE
Confidence            47889999999999998     78899999983

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=89.92  E-value=0.046  Score=38.67  Aligned_cols=18  Identities=6%  Similarity=0.049  Sum_probs=16.1

Q ss_pred             cEEEECCcHHHHHhhccc
Q psy7674         146 KVLLVGASYIALECAGCD  163 (164)
Q Consensus       146 ~vvViGgG~~g~E~A~~l  163 (164)
                      .++|||||+.|+++|..+
T Consensus        44 DvvVIGgG~aG~~aA~~~   61 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYL   61 (261)
T ss_dssp             SEEEECCSHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHH
Confidence            599999999999999765

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.34  E-value=0.72  Score=31.43  Aligned_cols=51  Identities=18%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             hHHHHhh-cCceEEeeEEEEeeCcEEEe-------CCeeEEEEeceEEEecCCCCCCCC
Q psy7674          74 YEKELEK-NKIDYFNAKAVFVDKHRVKF-------AGEERTVSAQNFIIAVGGRPTYPD  124 (164)
Q Consensus        74 ~~~~l~~-~gv~~~~~~~~~~~~~~v~v-------~~~~~~~~~d~liiAtGs~~~~p~  124 (164)
                      ++.++.+ .+++++.+.+.+.+......       ....+.+..|.++++||++|....
T Consensus       109 ~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~G~~p~~~~  167 (240)
T d1feca1         109 YEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLG  167 (240)
T ss_dssp             HHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEEECCCC
T ss_pred             eeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEecCCceeEcc
Confidence            3444544 47999999888776554432       333467899999999999997654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.33  E-value=0.37  Score=33.70  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=32.3

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--CcEEEe--CCeeEEEEeceEEEecCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--KHRVKF--AGEERTVSAQNFIIAVGGR  119 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v~v--~~~~~~~~~d~liiAtGs~  119 (164)
                      .+.+.+++.|++++.+ ++..++  ...+.+  +.  ..+.+|++|+|+|+.
T Consensus       155 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~--g~i~a~~VViAaG~~  204 (281)
T d2gf3a1         155 AYRELAEARGAKVLTHTRVEDFDISPDSVKIETAN--GSYTADKLIVSMGAW  204 (281)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETT--EEEEEEEEEECCGGG
T ss_pred             ccccccccccccccCCcEEEEEEEECCEEEEEECC--cEEEcCEEEECCCCc
Confidence            4566778899999987 565553  333444  43  469999999999974

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.88  E-value=0.062  Score=33.22  Aligned_cols=17  Identities=24%  Similarity=0.763  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|.++|||+|+...
T Consensus        29 ~~v~f~~~~C~~C~~~~   45 (115)
T d1zmaa1          29 ATFFIGRKTCPYCRKFA   45 (115)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEcCCCCccHHHHH
Confidence            46778999999998865

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.53  E-value=0.083  Score=38.27  Aligned_cols=19  Identities=32%  Similarity=0.331  Sum_probs=17.1

Q ss_pred             CcEEEECCcHHHHHhhccc
Q psy7674         145 GKVLLVGASYIALECAGCD  163 (164)
Q Consensus       145 ~~vvViGgG~~g~E~A~~l  163 (164)
                      ..|+|||||+.|+.+|..|
T Consensus        51 ~~~~~~g~g~~g~~~a~~~   69 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVI   69 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHH
Confidence            5799999999999999765

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.42  E-value=0.056  Score=35.74  Aligned_cols=17  Identities=24%  Similarity=0.788  Sum_probs=14.5

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .+++|..+|||+|+...
T Consensus        57 ~~l~~~~tWC~~C~~~~   73 (166)
T d1z6na1          57 RLLVAGEMWCPDCQINL   73 (166)
T ss_dssp             EEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCcCccHHHHH
Confidence            36679999999999976

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=87.07  E-value=0.2  Score=29.03  Aligned_cols=45  Identities=13%  Similarity=0.144  Sum_probs=33.9

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      |.++++++|+.|+.+.++... +. .++.+.++...+.||....+|.
T Consensus        15 v~~~l~~~gi~~e~~~v~~~~-~~-~~~~~~~~nP~g~VP~L~~~g~   59 (83)
T d1v2aa2          15 AILLAKKLGITLNLKKTNVHD-PV-ERDALTKLNPQHTIPTLVDNGH   59 (83)
T ss_dssp             HHHHHHHHTCCCEEEECCTTC-HH-HHHHHHHHCTTCCSCEEEETTE
T ss_pred             HHHHHHHhCCCceEEEEeCCC-Cc-chHHHHHHhhccCCCEEEEccc
Confidence            345678899999999998653 23 3556777889999998876655

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.05  E-value=0.31  Score=33.92  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--CcE--EEeCCeeEEEEeceEEEecCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--KHR--VKFAGEERTVSAQNFIIAVGGR  119 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~--v~v~~~~~~~~~d~liiAtGs~  119 (164)
                      .+.+.+++.|++++.+ +++.+.  .+.  |.++.  ..+.+|++|+|+|+.
T Consensus       156 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~--g~i~a~~vV~AaG~~  205 (276)
T d1ryia1         156 AYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPS--GDVWANHVVVASGVW  205 (276)
T ss_dssp             HHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETT--EEEEEEEEEECCGGG
T ss_pred             HHHHHHHHcCCEEecceEEEeEEeecceEEEecCC--eEEEcCEEEECCCcc
Confidence            3556678899999987 455553  223  33344  478999999999974

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.95  E-value=0.15  Score=32.08  Aligned_cols=17  Identities=41%  Similarity=1.179  Sum_probs=13.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        27 vll~F~a~wC~~C~~~~   43 (134)
T d1lu4a_          27 AVLWFWTPWCPFCNAEA   43 (134)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEeecccCCceecc
Confidence            44557789999999764

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.14  Score=29.22  Aligned_cols=42  Identities=14%  Similarity=0.074  Sum_probs=31.2

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEe-ece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFI-HGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i-~~~   48 (164)
                      |..+|.++|++|+.+.++...     ++.+.++.+.++||.... +|+
T Consensus        15 vr~~l~~kgi~~e~~~~~~~~-----~~~~~~~~p~~~VP~L~~~dg~   57 (75)
T d1g7oa2          15 ARMIFGLKNIPVELHVLLNDD-----AETPTRMVGQKQVPILQKDDSR   57 (75)
T ss_dssp             HHHHHHHHTCCCEEEECCTTT-----THHHHHHHSSSCCCEEEETTTE
T ss_pred             HHHHHHHhCCCcccccccccc-----hHHHHHhCCCCceEEEEEcCCC
Confidence            456788899999998886542     244566789999999887 445

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=86.23  E-value=0.12  Score=29.80  Aligned_cols=29  Identities=21%  Similarity=0.386  Sum_probs=24.6

Q ss_pred             CCceEEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          52 NNSVVIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        52 ~d~vvv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      ++.+.+|....||||.+..     -.+..+|+++
T Consensus         1 g~~mkLy~~~~sp~~~rvr-----~~l~~kgi~~   29 (83)
T d1gwca2           1 GDDLKLLGAWPSPFVTRVK-----LALALKGLSY   29 (83)
T ss_dssp             CCCEEEEECTTCHHHHHHH-----HHHHHHTCCC
T ss_pred             CCeEEEEecCCChHHHHHH-----HHHHHCCCCe
Confidence            4678899999999999887     6778888887

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.21  Score=28.99  Aligned_cols=47  Identities=23%  Similarity=0.356  Sum_probs=35.7

Q ss_pred             cccccCCCCCccEEEEecCCC-ChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLP-NGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      |.++|.++|+.|+.+.++-.. .+....+.+.++...++||....+|.
T Consensus        16 vr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~   63 (83)
T d1fw1a2          16 VRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGI   63 (83)
T ss_dssp             HHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTE
T ss_pred             HHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEEECCE
Confidence            456788999999999998654 33444455667888999999988776

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=86.01  E-value=0.16  Score=32.16  Aligned_cols=17  Identities=35%  Similarity=1.044  Sum_probs=13.2

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+..-
T Consensus        26 vvl~F~a~wC~~C~~~~   42 (143)
T d2fy6a1          26 TLIKFWASWCPLCLSEL   42 (143)
T ss_dssp             EEEEEECTTCHHHHTTH
T ss_pred             EEEEEECCCCccccccC
Confidence            44558899999998754

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.1  Score=29.79  Aligned_cols=25  Identities=24%  Similarity=0.580  Sum_probs=21.8

Q ss_pred             EEEeccCCcccccccchhhHHHHhhcCceE
Q psy7674          56 VIFSKSWCPFCTKAKENNYEKELEKNKIDY   85 (164)
Q Consensus        56 vv~~~~~cp~~~~~~~~~~~~~l~~~gv~~   85 (164)
                      -+|+...||||.+.+     -.+..+|+++
T Consensus         2 kLY~~~~cP~~~rvr-----~~l~~kgi~~   26 (75)
T d1g7oa2           2 KLYIYDHCPYCLKAR-----MIFGLKNIPV   26 (75)
T ss_dssp             EEEECTTCHHHHHHH-----HHHHHHTCCC
T ss_pred             EEEccCCCCchHHHH-----HHHHHhCCCc
Confidence            468889999999988     7788889987

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.10  E-value=0.25  Score=28.38  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=35.0

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      |..+|+++|+.|+.++++..+. ....+.+.++...+.+|.+..++.
T Consensus        16 v~~~L~~~gi~~~~~~i~~~~~-~~~~~~~~~~~p~~~vPvL~~~~~   61 (80)
T d1e6ba2          16 VRIALALKGLDYEYIPVNLLKG-DQFDSDFKKINPMGTVPALVDGDV   61 (80)
T ss_dssp             HHHHHHHTTCCCEEEECCTTTT-GGGCHHHHHHCTTCCSSEEEETTE
T ss_pred             HHHHHHHhCCCCEEEEEecccc-ccccHHHhhcCccccCCEEEECCE
Confidence            3567889999999999987654 444445556788899999987665

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.98  E-value=0.042  Score=37.75  Aligned_cols=84  Identities=17%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             hHHHHhhcCceEEeeEEEEeeCcEEEeCCeeEEEEeceEEEecCCCCCCCCCCCc--cceechhhhc----cCc------
Q psy7674          74 YEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA--HLGITSDDLF----SLN------  141 (164)
Q Consensus        74 ~~~~l~~~gv~~~~~~~~~~~~~~v~v~~~~~~~~~d~liiAtGs~~~~p~i~g~--~~v~~~~~~~----~~~------  141 (164)
                      ...++...+++++.+...  . .....+.  -...||++++|||+++..+.+++.  .......+.+    ...      
T Consensus        66 ~~~~~~~~g~~~~~~~~v--~-~~~~~~~--~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (239)
T d1lqta2          66 FEKTAEDPRFRFFGNVVV--G-EHVQPGE--LSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVV  140 (239)
T ss_dssp             HHHHHTSTTEEEEESCCB--T-TTBCHHH--HHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEEC
T ss_pred             hhhhhccCCceEEEEEEe--c-cccchhh--hhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccc
Confidence            345667778888765311  1 0011111  124699999999998776666554  1111100000    000      


Q ss_pred             ---CCCCcEEEECCcHHHHHhhcc
Q psy7674         142 ---KDPGKVLLVGASYIALECAGC  162 (164)
Q Consensus       142 ---~~~~~vvViGgG~~g~E~A~~  162 (164)
                         ...++++|+|+|..++++|..
T Consensus       141 ~~~~~g~~~vv~g~g~~a~d~a~~  164 (239)
T d1lqta2         141 GWIKRGPTGVIGTNKKDAQDTVDT  164 (239)
T ss_dssp             THHHHCSCSCTTHHHHHHHHHHHH
T ss_pred             eeecCCCEEEEeCCCchHHHHHHH
Confidence               013567777888988887753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=83.77  E-value=1.1  Score=31.55  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=31.6

Q ss_pred             hhHHHHhhcCceEEee-EEEEee--CcEE---EeCCeeEEEEeceEEEecCCC
Q psy7674          73 NYEKELEKNKIDYFNA-KAVFVD--KHRV---KFAGEERTVSAQNFIIAVGGR  119 (164)
Q Consensus        73 ~~~~~l~~~gv~~~~~-~~~~~~--~~~v---~v~~~~~~~~~d~liiAtGs~  119 (164)
                      .+.+.+++.|++++.+ +++.+.  ...+   ..+.  ..+.+|++|+|+|+.
T Consensus       153 ~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~--g~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         153 LLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTAD--GVIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT--EEEECSEEEECCGGG
T ss_pred             hHHhhhhcccccccCCceEEEEEEeCCEEEEEeccc--eeEECCEEEEecchh
Confidence            4556677889999987 465543  3333   3344  479999999999974

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=83.19  E-value=0.47  Score=28.83  Aligned_cols=41  Identities=27%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             EEEEecCCCChhHHHHHHHhhcCCCCcceEEeeceEecCCceEEEeccCCccccccc
Q psy7674          14 QVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGKHIDNNSVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        14 ~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~~ig~d~vvv~~~~~cp~~~~~~   70 (164)
                      ++++|+..   .+.++.|.+..+.. -|            .++.|..+||+.|..-.
T Consensus         5 ~vi~i~s~---e~~~~~l~~~~~~~-k~------------vvv~F~a~wC~~C~~~~   45 (113)
T d1ti3a_           5 QVIACHTV---DTWKEHFEKGKGSQ-KL------------IVVDFTASWCPPCKMIA   45 (113)
T ss_dssp             CEEEECSH---HHHHHHHHHHTTSS-SE------------EEEEEECSSCHHHHHHH
T ss_pred             cEEEEeCH---HHHHHHHHHHHcCC-CE------------EEEEEEcCccccchhhh
Confidence            56677666   67777787653221 11            24458899999998654

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.14  Score=32.22  Aligned_cols=17  Identities=47%  Similarity=0.942  Sum_probs=14.1

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+||++|+...
T Consensus        28 vlv~F~a~wC~~C~~~~   44 (135)
T d1sena_          28 LMVIIHKSWCGACKALK   44 (135)
T ss_dssp             EEEEEECTTCHHHHHHH
T ss_pred             EEEEEEecCCCCceecc
Confidence            45669999999999876

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=82.87  E-value=0.16  Score=31.05  Aligned_cols=16  Identities=19%  Similarity=0.690  Sum_probs=13.1

Q ss_pred             eEEEeccCCccccccc
Q psy7674          55 VVIFSKSWCPFCTKAK   70 (164)
Q Consensus        55 vvv~~~~~cp~~~~~~   70 (164)
                      ++.|.++||++|+...
T Consensus        26 lv~F~a~wC~~C~~~~   41 (117)
T d2fwha1          26 MLDLYADWCVACKEFE   41 (117)
T ss_dssp             EEEEECTTCHHHHHHH
T ss_pred             EEEEecccCCcccccc
Confidence            4568899999999754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=82.85  E-value=1  Score=30.64  Aligned_cols=45  Identities=9%  Similarity=0.066  Sum_probs=29.8

Q ss_pred             HHHHhhcCceEEee-EEEEeeC--c--EEEe--CCeeEEEEeceEEEecCCC
Q psy7674          75 EKELEKNKIDYFNA-KAVFVDK--H--RVKF--AGEERTVSAQNFIIAVGGR  119 (164)
Q Consensus        75 ~~~l~~~gv~~~~~-~~~~~~~--~--~v~v--~~~~~~~~~d~liiAtGs~  119 (164)
                      +.+.++.|++++.+ .++.++.  .  ++.+  ++....+.+|++|+|+|+.
T Consensus       226 ~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         226 DALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             HHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence            34556668999887 4566642  2  3333  4444679999999999863

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.49  E-value=1.1  Score=29.99  Aligned_cols=27  Identities=15%  Similarity=0.273  Sum_probs=19.6

Q ss_pred             EEEEeeCcEEEeCCeeEEEEeceEEEecC
Q psy7674          89 KAVFVDKHRVKFAGEERTVSAQNFIIAVG  117 (164)
Q Consensus        89 ~~~~~~~~~v~v~~~~~~~~~d~liiAtG  117 (164)
                      ....+.++.+.+++  .++.+|.+|.|||
T Consensus       208 ~I~~~~~~gV~~~d--g~~~~D~VV~ATG  234 (235)
T d1w4xa2         208 PIETITPRGVRTSE--REYELDSLVLATG  234 (235)
T ss_dssp             CEEEECSSEEEESS--CEEECSEEEECCC
T ss_pred             CCeEEeCCeEEECC--CEEcCCEEEeCCC
Confidence            34455566677755  2589999999999

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=82.45  E-value=0.21  Score=33.63  Aligned_cols=17  Identities=24%  Similarity=0.581  Sum_probs=13.4

Q ss_pred             ceEEEeccCCccccccc
Q psy7674          54 SVVIFSKSWCPFCTKAK   70 (164)
Q Consensus        54 ~vvv~~~~~cp~~~~~~   70 (164)
                      .++.|..+|||+|+...
T Consensus        35 vvl~FwatwCp~C~~~~   51 (187)
T d2cvba1          35 LAVVFMCNHCPYVKGSI   51 (187)
T ss_dssp             EEEEEECSSCHHHHTTH
T ss_pred             EEEEEeCCCCccchhhh
Confidence            45558999999998763

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=81.97  E-value=0.27  Score=28.56  Aligned_cols=46  Identities=13%  Similarity=0.301  Sum_probs=33.5

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      |..++++++++|+.+.++... +....+.+.++.-.+.||....+|.
T Consensus        15 v~~~l~e~gi~~e~~~v~~~~-~~~~~~~~~~~nP~g~vP~L~d~~~   60 (84)
T d1jlva2          15 VQMTAAAVGVELNLKLTNLMA-GEHMKPEFLKINPQHCIPTLVDNGF   60 (84)
T ss_dssp             HHHHHHHTTCCCEEEECCGGG-TGGGSHHHHHHCTTCCSCEEEETTE
T ss_pred             HHHHHHHcCCCCEEEEecCCC-CccCCHHHHHHhccccCCEEEECCE
Confidence            456788999999999998653 2334445557888999998765444

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=81.18  E-value=0.42  Score=27.73  Aligned_cols=46  Identities=20%  Similarity=0.275  Sum_probs=35.1

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      |..+++++|+.|+.+.+|... +...++.+.++.-.+.+|...-+|.
T Consensus        16 v~~~l~e~gi~~e~~~v~~~~-~~~~~~~~~~~nP~g~vP~L~~~~~   61 (85)
T d1r5aa2          16 VLLLAKMIGVELDLKVLNIME-GEQLKPDFVELNPQHCIPTMDDHGL   61 (85)
T ss_dssp             HHHHHHHTTCCEEEEECCTTT-TGGGSHHHHTTCTTCCSSEEEETTE
T ss_pred             HHHHHHHcCCCCEEEEecCCC-cccCCHHHHHHHhcCCCCEEEEccc
Confidence            456788999999999998764 3455566777888899998765554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=80.86  E-value=2.9  Score=29.78  Aligned_cols=50  Identities=12%  Similarity=-0.045  Sum_probs=28.6

Q ss_pred             HHHhhcCceEEee-EEEEee--CcE--EEe-C---C-eeEEEEeceEEEecCC--CCCCCCC
Q psy7674          76 KELEKNKIDYFNA-KAVFVD--KHR--VKF-A---G-EERTVSAQNFIIAVGG--RPTYPDI  125 (164)
Q Consensus        76 ~~l~~~gv~~~~~-~~~~~~--~~~--v~v-~---~-~~~~~~~d~liiAtGs--~~~~p~i  125 (164)
                      ...+..+..+..+ +++.++  ..+  |++ +   + ......||+||+|||.  .|..|.+
T Consensus       121 ~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~~~  182 (335)
T d2gv8a1         121 IYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYL  182 (335)
T ss_dssp             HHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCCBC
T ss_pred             HHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccccceeccc
Confidence            3444556667666 455553  333  444 1   1 1235679999999995  4555544

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=0.45  Score=26.99  Aligned_cols=46  Identities=9%  Similarity=0.078  Sum_probs=34.8

Q ss_pred             cccccCCCCCccEEEEecCCCChhHHHHHHHhhcCCCCcceEEeece
Q psy7674           2 VDIQTAPPDYNFQVVELDKLPNGAQIQTALFERTGQKTVPNIFIHGK   48 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~g~~~vp~v~i~~~   48 (164)
                      |..+++++|+.|+.+.+|.... ...++.+.++.-.+.+|...-+|.
T Consensus        17 v~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~np~g~vP~L~d~~~   62 (79)
T d1ljra2          17 VYIFAKKNGIPLELRTVDLVKG-QHKSKEFLQINSLGKLPTLKDGDF   62 (79)
T ss_dssp             HHHHHHHTTCCCEEEECCTTTT-GGGSHHHHTTCTTCCSCEEEETTE
T ss_pred             HHHHHHHhCCCCEEEeeecccc-ccCCHHHHHhhhhcceeEEEeCCc
Confidence            4567889999999999987753 444556667788899999865544