Psyllid ID: psy767
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 902 | 2.2.26 [Sep-21-2011] | |||||||
| Q28C74 | 1391 | Leucine-rich PPR motif-co | yes | N/A | 0.155 | 0.100 | 0.513 | 1e-40 | |
| Q5SGE0 | 1392 | Leucine-rich PPR motif-co | yes | N/A | 0.167 | 0.108 | 0.515 | 2e-40 | |
| P42704 | 1394 | Leucine-rich PPR motif-co | yes | N/A | 0.155 | 0.100 | 0.544 | 4e-40 | |
| Q6PB66 | 1392 | Leucine-rich PPR motif-co | yes | N/A | 0.167 | 0.108 | 0.503 | 9e-40 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | yes | N/A | 0.445 | 0.443 | 0.220 | 9e-17 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | N/A | 0.268 | 0.326 | 0.264 | 3e-16 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | N/A | 0.274 | 0.313 | 0.253 | 7e-16 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | N/A | 0.366 | 0.526 | 0.234 | 1e-14 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | N/A | 0.341 | 0.482 | 0.215 | 4e-14 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | N/A | 0.371 | 0.531 | 0.227 | 1e-13 |
| >sp|Q28C74|LPPRC_XENTR Leucine-rich PPR motif-containing protein, mitochondrial OS=Xenopus tropicalis GN=lrpprc PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 109/146 (74%), Gaps = 6/146 (4%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
EL D+SHYNALL+VYL NEH FSPT++LAK+E+ ++PNRVTYQ +LI+ YC
Sbjct: 139 ELGAVFDVSHYNALLKVYLQNEHKFSPTEYLAKMEAANVQPNRVTYQ------RLIAAYC 192
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+G+IEGA+KIL FM++K PI+E VFN L+ GH++A DM +A+ IL++M AG+EP +
Sbjct: 193 NEGDIEGASKILGFMKNKDLPITEAVFNTLVTGHARAGDMENAKNILSVMRSAGIEPGPE 252
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLK 221
TY L+ YA+ GD+++IK + +++
Sbjct: 253 TYVALLTAYAEKGDINNIKQTLENVE 278
|
May play a role in RNA metabolism in both nuclei and mitochondria. May bind mature mRNA in the nucleus outer membrane. In mitochondria binds to poly(A) mRNA. May be involved in transcription regulation. Binds single-stranded DNA. Xenopus tropicalis (taxid: 8364) |
| >sp|Q5SGE0|LPPRC_RAT Leucine-rich PPR motif-containing protein, mitochondrial OS=Rattus norvegicus GN=Lrpprc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 111/161 (68%), Gaps = 10/161 (6%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC G+IE
Sbjct: 160 DVSHYNALLKVYLQNEYRFSPTDFLAKMEGANIQPNRVTYQ------RLIAAYCSVGDIE 213
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
GA+KIL FM+ + PI+E VF+AL+ GH++A DM SAE ILT+M QAG+EP TY L+
Sbjct: 214 GASKILGFMKTRDLPITEAVFSALVTGHARAGDMESAENILTVMKQAGIEPGPDTYLALL 273
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242
+A+ GD+D +K + ++ F+ F L I+VS
Sbjct: 274 NAHAEKGDIDHVKQILEKVEKSDHYFMDRDF----LQIIVS 310
|
May play a role in RNA metabolism in both nuclei and mitochondria. In the nucleus binds to HNRPA1-associated poly(A) mRNAs and is part of nmRNP complexes at late stages of mRNA maturation which are possibly associated with nuclear mRNA export. May bind mature mRNA in the nucleus outer membrane. In mitochondria binds to poly(A) mRNA. Plays a role in translation or stability of mitochondrially encoded cytochrome c oxidase (COX) subunits. May be involved in transcription regulation. Cooperates with PPARGC1A to regulate certain mitochondrially encoded genes and gluconeogenic genes and may regulate docking of PPARGC1A to transcription factors. Seems to be involved in the transcription regulation of the multidrug-related genes MDR1 and MVP. Part of a nuclear factor that binds to the invMED1 element of MDR1 and MVP gene promoters. Binds single-stranded DNA. Rattus norvegicus (taxid: 10116) |
| >sp|P42704|LPPRC_HUMAN Leucine-rich PPR motif-containing protein, mitochondrial OS=Homo sapiens GN=LRPPRC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 107/147 (72%), Gaps = 7/147 (4%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC G+IE
Sbjct: 161 DVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQ------RLIASYCNVGDIE 214
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
GA+KIL FM+ K P++E VF+AL+ GH++A DM +AE ILT+M AG+EP TY L+
Sbjct: 215 GASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALL 274
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFL 228
YA+ GD+D +K + ++ +SEL L
Sbjct: 275 NAYAEKGDIDHVKQTLEKVE-KSELHL 300
|
May play a role in RNA metabolism in both nuclei and mitochondria. In the nucleus binds to HNRPA1-associated poly(A) mRNAs and is part of nmRNP complexes at late stages of mRNA maturation which are possibly associated with nuclear mRNA export. May bind mature mRNA in the nucleus outer membrane. In mitochondria binds to poly(A) mRNA. Plays a role in translation or stability of mitochondrially encoded cytochrome c oxidase (COX) subunits. May be involved in transcription regulation. Cooperates with PPARGC1A to regulate certain mitochondrially encoded genes and gluconeogenic genes and may regulate docking of PPARGC1A to transcription factors. Seems to be involved in the transcription regulation of the multidrug-related genes MDR1 and MVP. Part of a nuclear factor that binds to the invMED1 element of MDR1 and MVP gene promoters. Binds single-stranded DNA. Homo sapiens (taxid: 9606) |
| >sp|Q6PB66|LPPRC_MOUSE Leucine-rich PPR motif-containing protein, mitochondrial OS=Mus musculus GN=Lrpprc PE=1 SV=2 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 6/157 (3%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L V D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC
Sbjct: 154 QLGVVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEGANIQPNRVTYQ------RLIAAYC 207
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+KIL FM+ K PI+E VF+AL+ GH++A DM +AE ILT+M QAG+EP
Sbjct: 208 NVGDIEGASKILGFMKTKDLPITEAVFSALVTGHARAGDMENAENILTVMKQAGIEPGPD 267
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSF 232
TY L+ +A+ GD+ ++ + ++ F+ F
Sbjct: 268 TYLALLNAHAERGDIGQVRQILEKVEKSDHYFMDRDF 304
|
May play a role in RNA metabolism in both nuclei and mitochondria. In the nucleus binds to HNRPA1-associated poly(A) mRNAs and is part of nmRNP complexes at late stages of mRNA maturation which are possibly associated with nuclear mRNA export. May bind mature mRNA in the nucleus outer membrane. In mitochondria binds to poly(A) mRNA. Plays a role in translation or stability of mitochondrially encoded cytochrome c oxidase (COX) subunits. May be involved in transcription regulation. Cooperates with PPARGC1A to regulate certain mitochondrially encoded genes and gluconeogenic genes and may regulate docking of PPARGC1A to transcription factors. Seems to be involved in the transcription regulation of the multidrug-related genes MDR1 and MVP. Part of a nuclear factor that binds to the invMED1 element of MDR1 and MVP gene promoters (By similarity). Binds single-stranded DNA. Mus musculus (taxid: 10090) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 109/495 (22%), Positives = 187/495 (37%), Gaps = 93/495 (18%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YNAL+ ++ G+ PN VTY S LI +C+ G ++ A
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTY------SILIDMFCRRGKLDTALS 423
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
L M D +S +N+LI GH + D+++AEG + M LEP+ TYT LM GY
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL--ILVSSDMASAEGILTMMSQAGLEPS 263
G ++ + + ++F T LL + + + A + M++ ++P+
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTF--TTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541
Query: 264 AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGE----YID 316
TY ++ GY + GDM L + + D Y +IH L ++G ++D
Sbjct: 542 RVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601
Query: 317 EVSAIVCFVN-ICFHWL------EGPM--------------------------------- 336
+ C +N IC+ L EG +
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHK 661
Query: 337 -----------MSQAGLEPSAQTYTKLMCGYAKHGDMD---SIRRLLAQNGSSLVNGDYL 382
M GL+P YT ++ +K GD I L+ G Y
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721
Query: 383 DIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYH-----LINKGQID--AAYRIVN 435
+I+ L +G + + SK+QP + N + + ++ KG++D A + N
Sbjct: 722 AVINGLCKAGFVNEAEVLCSKMQP----VSSVPNQVTYGCFLDILTKGEVDMQKAVELHN 777
Query: 436 TLARS--ANINGEQLPVGGFLVRHMVK------TNQPGVGYSADAANH---IYHLINKGQ 484
+ + AN + + GF + ++ T G G S D + I L +
Sbjct: 778 AILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRND 837
Query: 485 IDAAYRIVNTLARSA 499
+ A + N++
Sbjct: 838 VKKAIELWNSMTEKG 852
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 26/268 (9%)
Query: 106 LAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165
+++ QGI P+ V Y + LI +C+ G+I A+K M + + A+
Sbjct: 339 FSEMIRQGILPDTVVY------TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392
Query: 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM-DSIKTKIPSLKPQS 224
I G Q DM A + M GLEP + T+T+L+ GY K G M D+ + ++
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452
Query: 225 ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284
+ L + L D+ SA +L M + GL+P+ TY ++ G K G+++
Sbjct: 453 SPNVVTYTTLIDGLC-KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 285 RLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG 341
+L+ + ++ +N D Y ++ A SG +D+ I+ M G
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGE---MDKAQEIL------------KEMLGKG 556
Query: 342 LEPSAQTYTKLMCGYAKHGDMDSIRRLL 369
L+P+ T+ LM G+ HG ++ +LL
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 121/312 (38%), Gaps = 64/312 (20%)
Query: 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE 141
D YN++L Y + FL K+ S G+EP+ VTY S L+ C++G
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY------SLLMDYLCKNGRCM 318
Query: 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201
A KI + M + + L+ G++ + G+L +M + G+ P ++ L+
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
C YAK G +D + L FS M Q GL
Sbjct: 379 CAYAKQGKVD-------------QAMLVFS----------------------KMRQQGLN 403
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQ---SGSSLVNGDYLDIIHALAVSGHGEYIDE- 317
P+A TY ++ K G ++ Q G S N Y +IH L E +E
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463
Query: 318 ----VSAIVCFVNICF------HWLEG---------PMMSQAGLEPSAQTYTKLMCGYAK 358
+ +C I F H EG +M + G++P+ TY L+ GY
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCL 523
Query: 359 HGDMDSIRRLLA 370
G MD +LL+
Sbjct: 524 AGKMDEAMKLLS 535
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 48/379 (12%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+N ++ H D ++E++GI PN VTY + LI+ C G A++
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY------NSLINCLCNYGRWSDASR 314
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+L M +K + FNALI + + AE + M Q ++P TY L+ G+
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCF-SFQLTNLLILVSSDMASAEG---ILTMMSQAGLE 261
H +D K + + C + Q N LI E + MSQ GL
Sbjct: 375 MHNRLDEAKQMFKFMVSKD----CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321
+ TYT ++ G+ + GD DS + + Q S+ V D + +++ + G Y +A+
Sbjct: 431 GNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIM--TYSILLHGLCSYGKLDTAL 488
Query: 322 VCF---------VNICFH--WLEGPMMSQAG-------------LEPSAQTYTKLMCGYA 357
V F +NI + +EG M +AG ++P TY ++ G
Sbjct: 489 VIFKYLQKSEMELNIFIYNTMIEG--MCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLC 546
Query: 358 KH---GDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADA 414
+ D + R + ++G+ +G Y +I A E+I +++ G+ DA
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSS-GFVGDA 605
Query: 415 A--NHIYHLINKGQIDAAY 431
+ + + ++++ G++D ++
Sbjct: 606 STISLVTNMLHDGRLDKSF 624
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 136/348 (39%), Gaps = 40/348 (11%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+ L+R + + L ++ G+EP+ + L+ C++G+++ A+K
Sbjct: 170 FVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVF------GCLLDALCKNGSVKEASK 223
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+ E MR+K FP + F +L+YG + + A+ +L M +AGLEP +T L+ GYA
Sbjct: 224 VFEDMREK-FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYA 282
Query: 206 KHGDMDSIKTKIPSLKPQ--SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS 263
G M + ++ + C++ L L M A + M + G E
Sbjct: 283 HAGKMADAYDLMNDMRKRGFEPNVNCYTV-LIQALCRTEKRMDEAMRVFVEMERYGCEAD 341
Query: 264 AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVC 323
TYT L+ G+ K G +D +L V + + + E +E
Sbjct: 342 IVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEE------ 395
Query: 324 FVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLD 383
C +E M + G P Y ++ K G++ RL +
Sbjct: 396 ----CLELIEK--MKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNE------------ 437
Query: 384 IIHALAVSGHGEYIDEIISKIQ--PGVGYSADAANHIYHLINKGQIDA 429
+ +G +D + I G+ +A NH ++++G A
Sbjct: 438 ----MEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSA 481
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 161/378 (42%), Gaps = 43/378 (11%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
YN ++ +H + ++E++GI PN VTY S LIS C G A++
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY------SSLISCLCNYGRWSDASR 312
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205
+L M ++ F+ALI + + AE + M + ++PS TY+ L+ G+
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372
Query: 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLT-NLLILVSSDMASAE---GILTMMSQAGLE 261
H +D K + + CF +T N LI E + MSQ GL
Sbjct: 373 MHDRLDEAKQMFEFMVSKH----CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLV 428
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGH------- 311
+ TY L+ G + GD D + + + S V + Y ++ L +G
Sbjct: 429 GNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 488
Query: 312 GEYI--DEVSAIVCFVNICFH-----------WLEGPMMSQAGLEPSAQTYTKLMCGYAK 358
EY+ ++ + NI W +S G++P Y ++ G+ +
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 359 HG---DMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415
G + D++ + + ++G+ +G Y +I A G E E+I +++ G++ DA+
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR-SCGFAGDAS 607
Query: 416 N--HIYHLINKGQIDAAY 431
+ ++++ G++D ++
Sbjct: 608 TIGLVTNMLHDGRLDKSF 625
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 902 | ||||||
| 195032542 | 1407 | GH10534 [Drosophila grimshawi] gi|193904 | 0.240 | 0.154 | 0.482 | 2e-53 | |
| 195388264 | 1413 | GJ19834 [Drosophila virilis] gi|19414926 | 0.161 | 0.103 | 0.611 | 2e-52 | |
| 195115116 | 1406 | GI17203 [Drosophila mojavensis] gi|19391 | 0.237 | 0.152 | 0.476 | 3e-52 | |
| 195579884 | 1412 | GD21832 [Drosophila simulans] gi|1941917 | 0.240 | 0.153 | 0.491 | 3e-52 | |
| 195344822 | 1412 | GM17088 [Drosophila sechellia] gi|194134 | 0.240 | 0.153 | 0.491 | 3e-52 | |
| 158293558 | 1397 | AGAP008770-PA [Anopheles gambiae str. PE | 0.160 | 0.103 | 0.664 | 4e-52 | |
| 24584970 | 1412 | bicoid stability factor [Drosophila mela | 0.240 | 0.153 | 0.486 | 4e-52 | |
| 194880213 | 1412 | GG21707 [Drosophila erecta] gi|190657571 | 0.239 | 0.152 | 0.493 | 7e-52 | |
| 13958630 | 1412 | bicoid mRNA stability factor [Drosophila | 0.240 | 0.153 | 0.482 | 9e-52 | |
| 195484148 | 1412 | GE12730 [Drosophila yakuba] gi|194176674 | 0.160 | 0.102 | 0.631 | 2e-51 |
| >gi|195032542|ref|XP_001988519.1| GH10534 [Drosophila grimshawi] gi|193904519|gb|EDW03386.1| GH10534 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 154/228 (67%), Gaps = 11/228 (4%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ LI+ +YCQ
Sbjct: 135 LNVPMDISHYNALLRVYLENEHQFAPTDFLAEIEAKGIEPNRVTYQHLIT------RYCQ 188
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 189 QGDIEGATRILEFMRGKSLPVNENVFNSLILGHSQANDLESAKGILGVMRQAGLEPSADT 248
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
YT L+C +A+HGD+D+++ + +P+ + L + ++ +G+LT +
Sbjct: 249 YTTLLCAFARHGDIDALQATLAECEPKEIILLDKDLLDIIYTLTINGHGEHVDGLLTKLR 308
Query: 257 -QAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLA-QSGSSLVNGDYLDI 302
AG Q ++ +G D +LL S+ VNG+ +D+
Sbjct: 309 ISAGFN---QDAVNIILRLVNNGYEDVALKLLRLMPRSTRVNGELVDV 353
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195388264|ref|XP_002052803.1| GJ19834 [Drosophila virilis] gi|194149260|gb|EDW64958.1| GJ19834 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 127/152 (83%), Gaps = 6/152 (3%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 135 LNVPMDISHYNALLRVYLENEHQFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 188
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILE+MR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 189 QGDIEGATRILEYMRGKSLPVNENVFNSLILGHSQANDLESAKGILGVMKQAGLEPSADT 248
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
YT L+C +A+HGD++++++ + +P+ + L
Sbjct: 249 YTTLLCAFARHGDIEALQSTLAECEPKEIILL 280
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195115116|ref|XP_002002110.1| GI17203 [Drosophila mojavensis] gi|193912685|gb|EDW11552.1| GI17203 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 159/231 (68%), Gaps = 17/231 (7%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 135 LNVPMDISHYNALLRVYLENEHQFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 188
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILE+MR K P++E VFN+LI GHSQAND+ SA GIL +M QAGLEP+A T
Sbjct: 189 QGDIEGATRILEYMRGKKLPVNENVFNSLILGHSQANDLESARGILGVMKQAGLEPTADT 248
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMA---SAEGILT 253
YT L+C +A+HGD++++++ + +P+ E+ L L L+ V+ +A + E +
Sbjct: 249 YTTLLCAFARHGDIEALQSTLAECEPK-EIIL-----LDKDLLDVAYTLAVHGNGEHVDA 302
Query: 254 MMSQAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLLA-QSGSSLVNGDYLDI 302
++S+ + P Q ++ G D +LL +S VNG+ +D+
Sbjct: 303 VLSKLRISPGFNQDAVNIILRLVNKGQEDVALKLLRLMPRNSRVNGEPVDV 353
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195579884|ref|XP_002079789.1| GD21832 [Drosophila simulans] gi|194191798|gb|EDX05374.1| GD21832 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 156/228 (68%), Gaps = 11/228 (4%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 134 LNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 187
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 188 QGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMKQAGLEPSADT 247
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
YT L+C +A+HGD+ ++K I Q E+ L L +++ ++ + + E + ++
Sbjct: 248 YTTLLCAFARHGDLAAVKETIAECD-QKEIIL-LDKDLLDIVYTLTVN-GNGEHVDEILP 304
Query: 257 QAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLL-AQSGSSLVNGDYLDI 302
+ L P Q ++ G D +LL SS VNG+ +D+
Sbjct: 305 KLRLSPGFNQDAVNVILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDV 352
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195344822|ref|XP_002038978.1| GM17088 [Drosophila sechellia] gi|194134108|gb|EDW55624.1| GM17088 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 156/228 (68%), Gaps = 11/228 (4%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 134 LNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 187
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 188 QGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMKQAGLEPSADT 247
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
YT L+C +A+HGD+ ++K I Q E+ L L +++ ++ + + E + ++
Sbjct: 248 YTTLLCAFARHGDLAAVKETIAECD-QKEIIL-LDKDLLDIVYTLTVN-GNGEHVDEILP 304
Query: 257 QAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLL-AQSGSSLVNGDYLDI 302
+ L P Q ++ G D +LL SS VNG+ +D+
Sbjct: 305 KLRLSPGFNQDAVNVILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDV 352
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158293558|ref|XP_557938.3| AGAP008770-PA [Anopheles gambiae str. PEST] gi|157016766|gb|EAL40302.3| AGAP008770-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 124/152 (81%), Gaps = 7/152 (4%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+V +D+SHYNALLRVYLDNEH FSPT+FLA L+S+GIEPNRVTYQ +LIS+YCQ
Sbjct: 132 LNVAMDVSHYNALLRVYLDNEHPFSPTEFLADLQSKGIEPNRVTYQ------RLISRYCQ 185
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR+K P++E VFNALI GHSQA+D+ SA GIL +M+QAGL+PSA T
Sbjct: 186 QGDIEGATRILEFMREKQLPVNEYVFNALIMGHSQADDLESATGILAVMAQAGLQPSADT 245
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
YT L+CGYA+ GD+D I I S + Q E+FL
Sbjct: 246 YTTLLCGYARKGDIDYICKTIDSCE-QKEIFL 276
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24584970|ref|NP_523596.2| bicoid stability factor [Drosophila melanogaster] gi|22946750|gb|AAF53668.2| bicoid stability factor [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 158/228 (69%), Gaps = 11/228 (4%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 134 LNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 187
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 188 QGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMMQAGLEPSADT 247
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
YT L+C +A+HGD+ ++K + + Q E+ L L +++ ++ + + E + +++
Sbjct: 248 YTTLLCAFARHGDLAAVKETLAECE-QKEIIL-LDKDLLDIVYTLTVN-GNGEHVDDVLT 304
Query: 257 QAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLL-AQSGSSLVNGDYLDI 302
+ L P Q ++ G D +LL SS VNG+ +D+
Sbjct: 305 KLRLSPGFNQDAVNVILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDV 352
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194880213|ref|XP_001974384.1| GG21707 [Drosophila erecta] gi|190657571|gb|EDV54784.1| GG21707 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 156/229 (68%), Gaps = 13/229 (5%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 134 LNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 187
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 188 QGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMKQAGLEPSADT 247
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL-VSSDMASAEGILTMM 255
YT L+C +A+HGD+ ++K + + Q E+ L L + L V+ ++ + + +LT +
Sbjct: 248 YTTLLCAFARHGDLAALKETLTECE-QKEIILLDKDLLDIVYTLTVNGNVENVDEVLTKL 306
Query: 256 S-QAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL-AQSGSSLVNGDYLDI 302
G Q ++ G D +LL SS VNG+ +D+
Sbjct: 307 RLSRGFN---QDAVNVILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDV 352
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|13958630|gb|AAK50882.1|AF327844_1 bicoid mRNA stability factor [Drosophila melanogaster] gi|16186254|gb|AAL14024.1| SD10676p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 158/228 (69%), Gaps = 11/228 (4%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP++ISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 134 LNVPMNISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 187
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 188 QGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMKQAGLEPSADT 247
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
YT L+C +A+HGD+ ++K + + Q E+ L L +++ ++ + + E + +++
Sbjct: 248 YTTLLCAFARHGDLAAVKETLAECE-QKEIIL-LDKDLLDIVYTLTVN-GNGEHVDDVLT 304
Query: 257 QAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLL-AQSGSSLVNGDYLDI 302
+ L P Q ++ G D +LL SS VNG+ +D+
Sbjct: 305 KLRLSPGFNQDAVNVILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDV 352
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195484148|ref|XP_002090573.1| GE12730 [Drosophila yakuba] gi|194176674|gb|EDW90285.1| GE12730 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 125/152 (82%), Gaps = 7/152 (4%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP+DISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 134 LNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 187
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 188 QGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMKQAGLEPSADT 247
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
YT L+C +A+HGD+ ++K + + Q E+ L
Sbjct: 248 YTTLLCAFARHGDLAALKETLNECE-QKEIIL 278
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 902 | ||||||
| FB|FBgn0032679 | 1412 | bsf "bicoid stability factor" | 0.240 | 0.153 | 0.482 | 1.3e-66 | |
| UNIPROTKB|B8ZZ38 | 504 | LRPPRC "Leucine-rich PPR motif | 0.161 | 0.289 | 0.529 | 5.9e-40 | |
| RGD|1306575 | 1392 | Lrpprc "leucine-rich pentatric | 0.178 | 0.115 | 0.497 | 2.6e-39 | |
| UNIPROTKB|I3LIC2 | 1395 | LRPPRC "Uncharacterized protei | 0.161 | 0.104 | 0.535 | 3e-39 | |
| UNIPROTKB|P42704 | 1394 | LRPPRC "Leucine-rich PPR motif | 0.161 | 0.104 | 0.529 | 2.9e-38 | |
| UNIPROTKB|F1NGU3 | 1342 | LRPPRC "Uncharacterized protei | 0.161 | 0.108 | 0.509 | 3.1e-38 | |
| UNIPROTKB|E1BPX9 | 1396 | LOC100850455 "Uncharacterized | 0.161 | 0.104 | 0.509 | 3.9e-38 | |
| MGI|MGI:1919666 | 1392 | Lrpprc "leucine-rich PPR-motif | 0.162 | 0.105 | 0.509 | 8.4e-38 | |
| UNIPROTKB|C9JCA9 | 359 | LRPPRC "Leucine-rich PPR motif | 0.161 | 0.406 | 0.529 | 3e-37 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.577 | 0.596 | 0.215 | 1e-14 |
| FB|FBgn0032679 bsf "bicoid stability factor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 1.3e-66, Sum P(4) = 1.3e-66
Identities = 110/228 (48%), Positives = 158/228 (69%)
Query: 77 LDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136
L+VP++ISHYNALLRVYL+NEH F+PTDFLA++E++GIEPNRVTYQ +LI++YCQ
Sbjct: 134 LNVPMNISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQ------RLIARYCQ 187
Query: 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196
G+IEGAT+ILEFMR K+ P++E VFN+LI GHSQAND+ SA+GIL +M QAGLEPSA T
Sbjct: 188 QGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMKQAGLEPSADT 247
Query: 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256
YT L+C +A+HGD+ ++K + + Q E+ L L +++ ++ + + E + +++
Sbjct: 248 YTTLLCAFARHGDLAAVKETLAECE-QKEIIL-LDKDLLDIVYTLTVN-GNGEHVDDVLT 304
Query: 257 QAGLEPSA-QTYTKLMCGYAKHGDMDSVRRLL-AQSGSSLVNGDYLDI 302
+ L P Q ++ G D +LL SS VNG+ +D+
Sbjct: 305 KLRLSPGFNQDAVNVILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDV 352
|
|
| UNIPROTKB|B8ZZ38 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 5.9e-40, Sum P(2) = 5.9e-40
Identities = 81/153 (52%), Positives = 110/153 (71%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ+LI++ YC
Sbjct: 155 KLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIAS------YC 208
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+KIL FM+ K P++E VF+AL+ GH++A DM +AE ILT+M AG+EP
Sbjct: 209 NVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPD 268
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
TY L+ YA+ GD+D +K + ++ +SEL L
Sbjct: 269 TYLALLNAYAEKGDIDHVKQTLEKVE-KSELHL 300
|
|
| RGD|1306575 Lrpprc "leucine-rich pentatricopeptide repeat containing" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 85/171 (49%), Positives = 114/171 (66%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC
Sbjct: 154 QLGTVYDVSHYNALLKVYLQNEYRFSPTDFLAKMEGANIQPNRVTYQ------RLIAAYC 207
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+KIL FM+ + PI+E VF+AL+ GH++A DM SAE ILT+M QAG+EP
Sbjct: 208 SVGDIEGASKILGFMKTRDLPITEAVFSALVTGHARAGDMESAENILTVMKQAGIEPGPD 267
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMA 246
TY L+ +A+ GD+D +K + ++ F+ F L I+VS A
Sbjct: 268 TYLALLNAHAEKGDIDHVKQILEKVEKSDHYFMDRDF----LQIIVSFSKA 314
|
|
| UNIPROTKB|I3LIC2 LRPPRC "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 3.0e-39, Sum P(3) = 3.0e-39
Identities = 82/153 (53%), Positives = 111/153 (72%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L DISHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC
Sbjct: 156 KLGTVYDISHYNALLKVYLQNEYKFSPTDFLAKMEKANIQPNRVTYQ------RLIAAYC 209
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+G+IEGA+KIL FM+ K PI+E VF+AL+ GH++A DM +AE ILT+M +AG+EP
Sbjct: 210 NEGDIEGASKILGFMKTKDLPITEAVFSALVTGHARAGDMENAENILTVMKEAGIEPGPD 269
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
TY L+ YA+ GD+D +K + ++ +S+ FL
Sbjct: 270 TYLALLNAYAEKGDIDHVKQTLEKVE-KSDHFL 301
|
|
| UNIPROTKB|P42704 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 2.9e-38, Sum P(3) = 2.9e-38
Identities = 81/153 (52%), Positives = 110/153 (71%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ+LI++ YC
Sbjct: 155 KLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIAS------YC 208
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+KIL FM+ K P++E VF+AL+ GH++A DM +AE ILT+M AG+EP
Sbjct: 209 NVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPD 268
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
TY L+ YA+ GD+D +K + ++ +SEL L
Sbjct: 269 TYLALLNAYAEKGDIDHVKQTLEKVE-KSELHL 300
|
|
| UNIPROTKB|F1NGU3 LRPPRC "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 3.1e-38, Sum P(3) = 3.1e-38
Identities = 78/153 (50%), Positives = 109/153 (71%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
EL D SHYNALL+VYL NEH FSPT+FLA++E ++PNRVTYQ +LI+ YC
Sbjct: 98 ELGAVYDTSHYNALLKVYLQNEHKFSPTEFLARMEEANVQPNRVTYQ------RLIAAYC 151
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
+G+IEGA+KIL FM+ K PI+E VF++L+ GH+++ D+ SAE IL++M AG+EP
Sbjct: 152 NEGDIEGASKILGFMKSKDLPITEAVFSSLVKGHARSGDIKSAENILSVMRMAGVEPGPD 211
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
TY L+ YA+ GD DSIK + ++ ++E +L
Sbjct: 212 TYLSLLNVYAEKGDADSIKKTLEEVE-KTEGYL 243
|
|
| UNIPROTKB|E1BPX9 LOC100850455 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 3.9e-38, Sum P(2) = 3.9e-38
Identities = 78/153 (50%), Positives = 110/153 (71%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L D+SHYNALL+VYL NEH FSPTDFLAK+E ++PNRVTYQ +LI+ YC
Sbjct: 156 KLGTVYDVSHYNALLKVYLQNEHKFSPTDFLAKMEKGNVQPNRVTYQ------RLIAAYC 209
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+ IL FM+ K P++E VF+AL+ GH+++ DM +AE ILT+M +AG+EP
Sbjct: 210 NMGDIEGASTILGFMKTKDLPVTEAVFSALVTGHARSGDMENAENILTVMKEAGIEPGPD 269
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
TY L+ YA+ GD+D +K + ++ +S+L+L
Sbjct: 270 TYLALLNAYAEKGDIDHVKQTLEKVE-KSDLYL 301
|
|
| MGI|MGI:1919666 Lrpprc "leucine-rich PPR-motif containing" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 8.4e-38, Sum P(3) = 8.4e-38
Identities = 78/153 (50%), Positives = 107/153 (69%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L V D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ +LI+ YC
Sbjct: 154 QLGVVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEGANIQPNRVTYQ------RLIAAYC 207
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+KIL FM+ K PI+E VF+AL+ GH++A DM +AE ILT+M QAG+EP
Sbjct: 208 NVGDIEGASKILGFMKTKDLPITEAVFSALVTGHARAGDMENAENILTVMKQAGIEPGPD 267
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
TY L+ +A+ GD+ ++ + ++ F+
Sbjct: 268 TYLALLNAHAERGDIGQVRQILEKVEKSDHYFM 300
|
|
| UNIPROTKB|C9JCA9 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 81/153 (52%), Positives = 110/153 (71%)
Query: 76 ELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135
+L D+SHYNALL+VYL NE+ FSPTDFLAK+E I+PNRVTYQ+LI++ YC
Sbjct: 129 KLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIAS------YC 182
Query: 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195
G+IEGA+KIL FM+ K P++E VF+AL+ GH++A DM +AE ILT+M AG+EP
Sbjct: 183 NVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPD 242
Query: 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228
TY L+ YA+ GD+D +K + ++ +SEL L
Sbjct: 243 TYLALLNAYAEKGDIDHVKQTLEKVE-KSELHL 274
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 122/565 (21%), Positives = 234/565 (41%)
Query: 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK 145
+ L+R Y T + L +ES G+ PN+V Y ++S+ +C++G + + K
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSS------FCREGRNDDSEK 238
Query: 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMS---QAGL-EPSAQTYTKLM 201
++E MR++ FN+ I + + A I + M GL P++ TY ++
Sbjct: 239 MVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLML 298
Query: 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE 261
G+ K G ++ KT S++ +L S+ + ++ AE +L M+ G+
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIG 358
Query: 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII-HALAVSGHGEYIDEVSA 320
PS +Y LM G K G + + ++ G NG D + + + G+ + +V A
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIV---GLMKRNGVCPDAVTYGCLLHGYCS-VGKVDA 414
Query: 321 IVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG---DMDSIRRLLAQNGSSLV 377
+ MM L P+A T L+ K G + + + R + + G L
Sbjct: 415 AKSLLQ--------EMMRNNCL-PNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLD 465
Query: 378 NGDYLDIIHALAVSGHGEYIDEIISKIQP-GVGYSADAANHIYHLINKGQIDAAYRIVNT 436
I+ L SG + EI+ ++ G + N L++ I+ + +
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNC-LPDL 524
Query: 437 LARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANH---IYHLINKGQIDAAYRIVN 493
+ S +NG G F + G D+ + I+H +G+I +A+R++
Sbjct: 525 ITYSTLLNG-LCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLK 583
Query: 494 TLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR--AFNLAVLIKA 551
+ + + L L+ + NQ I ++ + + ++ + P +N A+
Sbjct: 584 DMEKKGC--HKSLETYNSLILGLGIKNQ-IFEIHGLMDEMKEKGISPNICTYNTAIQYLC 640
Query: 552 HVLK-EDYTGAVETFEYCVNQFRATPWKGE-LLKRFIQAEDAACLQRITDLSTSIHGEVN 609
K ED T ++ E + + L++ F + D Q + + + SI G+
Sbjct: 641 EGEKVEDATNLLD--EMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKE 698
Query: 610 SLYDLMLSFLDA--EVLRILQVAEA 632
LY LM + L A ++L+ ++ EA
Sbjct: 699 GLYSLMFNELLAAGQLLKATELLEA 723
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 902 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| cd07847 | 286 | cd07847, STKc_CDKL1_4, Catalytic domain of the Ser | 3e-04 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| cd06614 | 286 | cd06614, STKc_PAK, Catalytic domain of the Protein | 0.002 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 0.002 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 0.002 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206
+N LI G+ + + A + M + G++P+ TY+ L+ G K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 5e-06
Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 55/229 (24%)
Query: 104 DFLA--KLESQGIEPNRVTYQQLISNS-------------KLISKY-------------- 134
D LA K E+ I+P+ +T L+ ++I +Y
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 135 -C-QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP 192
C Q G+ + A I + M+ K E F+AL+ A D+ A IL + G++
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 193 SAQTYTKLM--CGYAK--------HGDMDSIKTKIPSLKPQSELF--LCFSFQLTNLLIL 240
+Y+ LM C AK + D+ SIK + P++ + L LC QL
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNALITALCEGNQLPK---- 737
Query: 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289
A +L+ M + GL P+ TY+ L+ + D D LL+Q
Sbjct: 738 -------ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 1e-04
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 112 QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMR 151
+G++P+ VTY N+ LI C+ G ++ A ++L+ M
Sbjct: 1 KGLKPDVVTY-----NT-LIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 852 CLDKDPLRRWSCDQLLRHPYF 872
CL DP R SC++LL HPYF
Sbjct: 266 CLQMDPTERLSCEELLEHPYF 286
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
CL KDP +R S +LL+HP+
Sbjct: 238 ACLQKDPKKRPSAAELLQHPFIKKA 262
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 35/85 (41%)
Query: 192 PSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251
P TY L+ GY K G ++ A +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEE-----------------------------------ALKL 25
Query: 252 LTMMSQAGLEPSAQTYTKLMCGYAK 276
M + G++P+ TY+ L+ G K
Sbjct: 26 FNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
+CL KDP +R S ++LL+HP+
Sbjct: 252 KCLVKDPEKRPSAEELLQHPFLK 274
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+CL +DP +R + D+LL+HP+
Sbjct: 239 KCLRRDPKKRPTADELLQHPFL 260
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+ L KDP +R + ++ L+HP+F
Sbjct: 233 KLLVKDPEKRLTAEEALQHPFF 254
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 109 LESQGIEPNRVTYQQLISNSKLISKYC-QDGNIEGATKILEFMRDKTFPISEG--VFNAL 165
+ S+ ++P+RV + LIS C Q G ++ A +L M+ +T PI AL
Sbjct: 533 MRSKNVKPDRVVFNALISA-------CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD---SIKT--KIPSL 220
+ + A + A+ + M+ + ++ + + YT + ++ GD D SI K +
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 221 KPQSELFLCFSFQLTNLLILV---SSDMASAEGILTMMSQAGLEPSAQTYTKLM--CGYA 275
KP E+F + L+ V + D+ A IL + G++ +Y+ LM C A
Sbjct: 646 KP-DEVFF-------SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 276 K 276
K
Sbjct: 698 K 698
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 902 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| KOG4318|consensus | 1088 | 99.92 | ||
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.74 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.7 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.69 | |
| KOG4318|consensus | 1088 | 99.67 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.65 | |
| KOG4422|consensus | 625 | 99.65 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.6 | |
| KOG4626|consensus | 966 | 99.6 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.59 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.59 | |
| KOG4422|consensus | 625 | 99.59 | ||
| KOG4626|consensus | 966 | 99.53 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.53 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.53 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.5 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.44 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.43 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.34 | |
| KOG2002|consensus | 1018 | 99.33 | ||
| KOG2002|consensus | 1018 | 99.27 | ||
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG2076|consensus | 895 | 99.18 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| KOG2076|consensus | 895 | 99.11 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.07 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.07 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.04 | |
| KOG0593|consensus | 396 | 99.02 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.0 | |
| KOG0495|consensus | 913 | 98.99 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.95 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.9 | |
| KOG1915|consensus | 677 | 98.89 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.89 | |
| KOG2003|consensus | 840 | 98.88 | ||
| KOG0495|consensus | 913 | 98.87 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.87 | |
| KOG1126|consensus | 638 | 98.82 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.8 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.79 | |
| KOG1126|consensus | 638 | 98.71 | ||
| KOG3785|consensus | 557 | 98.7 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.69 | |
| KOG2003|consensus | 840 | 98.68 | ||
| KOG0547|consensus | 606 | 98.67 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.65 | |
| KOG1155|consensus | 559 | 98.64 | ||
| KOG0547|consensus | 606 | 98.62 | ||
| KOG1840|consensus | 508 | 98.62 | ||
| KOG1155|consensus | 559 | 98.6 | ||
| KOG1840|consensus | 508 | 98.59 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.54 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG2047|consensus | 835 | 98.5 | ||
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| KOG1915|consensus | 677 | 98.45 | ||
| KOG1156|consensus | 700 | 98.45 | ||
| KOG2376|consensus | 652 | 98.42 | ||
| KOG3785|consensus | 557 | 98.4 | ||
| KOG3617|consensus | 1416 | 98.39 | ||
| KOG1129|consensus | 478 | 98.37 | ||
| KOG1156|consensus | 700 | 98.37 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.33 | |
| KOG1129|consensus | 478 | 98.26 | ||
| KOG2047|consensus | 835 | 98.23 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.23 | |
| KOG1173|consensus | 611 | 98.23 | ||
| KOG3616|consensus | 1636 | 98.18 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.14 | |
| KOG1174|consensus | 564 | 98.13 | ||
| KOG3616|consensus | 1636 | 98.07 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.05 | |
| KOG1173|consensus | 611 | 98.05 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.04 | |
| KOG3617|consensus | 1416 | 98.03 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.0 | |
| KOG2376|consensus | 652 | 97.99 | ||
| KOG4340|consensus | 459 | 97.96 | ||
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.93 | |
| KOG4162|consensus | 799 | 97.91 | ||
| KOG1174|consensus | 564 | 97.89 | ||
| KOG4162|consensus | 799 | 97.87 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.86 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.81 | |
| KOG1914|consensus | 656 | 97.8 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.79 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.78 | |
| KOG0985|consensus | 1666 | 97.76 | ||
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.75 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.69 | |
| KOG1128|consensus | 777 | 97.68 | ||
| KOG1070|consensus | 1710 | 97.63 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.57 | |
| KOG1125|consensus | 579 | 97.55 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.51 | |
| KOG1070|consensus | 1710 | 97.44 | ||
| KOG1127|consensus | 1238 | 97.37 | ||
| KOG2053|consensus | 932 | 97.33 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.31 | |
| KOG4340|consensus | 459 | 97.31 | ||
| KOG1125|consensus | 579 | 97.29 | ||
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.29 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.27 | |
| KOG1127|consensus | 1238 | 97.25 | ||
| KOG0624|consensus | 504 | 97.24 | ||
| KOG1128|consensus | 777 | 97.24 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.21 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.21 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.19 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.19 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.17 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.06 | |
| KOG0985|consensus | 1666 | 97.05 | ||
| KOG3081|consensus | 299 | 97.05 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.05 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.04 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.03 | |
| KOG0624|consensus | 504 | 97.0 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 96.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.93 | |
| KOG3081|consensus | 299 | 96.92 | ||
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.89 | |
| KOG0548|consensus | 539 | 96.79 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.78 | |
| KOG0548|consensus | 539 | 96.76 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 96.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.71 | |
| KOG2280|consensus | 829 | 96.7 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.67 | |
| KOG3060|consensus | 289 | 96.63 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.6 | |
| KOG2053|consensus | 932 | 96.56 | ||
| KOG2041|consensus | 1189 | 96.48 | ||
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.47 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.44 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.42 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.01 | |
| KOG1538|consensus | 1081 | 95.92 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.9 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.68 | |
| KOG1914|consensus | 656 | 95.67 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.63 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.36 | |
| KOG3060|consensus | 289 | 95.3 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.18 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.04 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.96 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 94.89 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.81 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.57 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.57 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 94.25 | |
| KOG1538|consensus | 1081 | 94.21 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 94.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.07 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 93.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.92 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 93.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.32 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 93.24 | |
| KOG3941|consensus | 406 | 93.01 | ||
| KOG0553|consensus | 304 | 92.84 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 92.76 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.51 | |
| KOG1920|consensus | 1265 | 92.36 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.27 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 92.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 91.75 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 91.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 91.69 | |
| KOG3941|consensus | 406 | 91.34 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 90.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 90.17 | |
| KOG1130|consensus | 639 | 89.67 | ||
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 89.62 | |
| KOG2796|consensus | 366 | 89.45 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 89.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 88.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 88.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 88.63 | |
| KOG2796|consensus | 366 | 88.44 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 88.4 | |
| KOG1920|consensus | 1265 | 88.21 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 88.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 87.32 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 87.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.11 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.83 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.77 | |
| KOG2041|consensus | 1189 | 86.74 | ||
| KOG0553|consensus | 304 | 86.65 | ||
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.41 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 86.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 86.06 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 85.58 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 85.57 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 85.4 | |
| KOG2610|consensus | 491 | 85.24 | ||
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 85.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.45 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 84.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 83.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 83.52 | |
| KOG0550|consensus | 486 | 81.97 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.57 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 81.38 | |
| KOG0659|consensus | 318 | 80.69 | ||
| KOG4555|consensus | 175 | 80.14 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=615.41 Aligned_cols=655 Identities=14% Similarity=0.107 Sum_probs=576.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH
Q psy767 40 VLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV 119 (902)
Q Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 119 (902)
..+...++.++.++++.|++++|..+|+.|.. .|++|+..+|+.++.+|.+.+.++.+.+++..+.+.|..|+..
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-----~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQE-----LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch
Confidence 34566788999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 120 TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199 (902)
Q Consensus 120 t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 199 (902)
.++++ |++|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...|+.||..||++
T Consensus 123 ~~n~l------i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 123 LGNAM------LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHHHH------HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 99999 9999999999999999999975 5679999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 200 LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 200 ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~ 279 (902)
++++|+..+++..+.+++..+.+.+..++...++.++..|+++|+++.|.++|++|. .||.++||+||.+|++.|+
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999997 6899999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHc
Q psy767 280 MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH 359 (902)
Q Consensus 280 ~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~ 359 (902)
+++|+++|.+|...|+.|+..++..++..|...+..+.+.+++. .+.+.|+.||..+||+||.+|+++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~------------~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG------------YVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH------------HHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999986 489999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHH
Q psy767 360 GDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 360 g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~ 436 (902)
|++++|.++|++|.. ++..+|+++|.+|++.|++++|+++|++|.+ .|+.||..| ++.+|++.|++++|.++++.
T Consensus 337 g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 337 GSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred CCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999999975 4777899999999999999999999999998 899999886 58889999999999999999
Q ss_pred HHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHH
Q psy767 437 LARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 515 (902)
Q Consensus 437 m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~ 515 (902)
|.+. ++.++. .+++ +|.+|+++|++++|.++|+.|... +..+||++|.+
T Consensus 415 ~~~~-g~~~~~-----------------------~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------d~vs~~~mi~~ 464 (857)
T PLN03077 415 AERK-GLISYV-----------------------VVANALIEMYSKCKCIDKALEVFHNIPEK------DVISWTSIIAG 464 (857)
T ss_pred HHHh-CCCcch-----------------------HHHHHHHHHHHHcCCHHHHHHHHHhCCCC------CeeeHHHHHHH
Confidence 9876 333332 3444 888899999999999999999764 45689999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcch---------------HHH
Q psy767 516 MVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPW---------------KGE 580 (902)
Q Consensus 516 ~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~---------------~~~ 580 (902)
|++.|+ .++|+.+|++|.. ++.||..||++++.++ + +.|.++. +.++ ...
T Consensus 465 ~~~~g~-~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~-~---~~g~l~~---------~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 465 LRLNNR-CFEALIFFRQMLL-TLKPNSVTLIAALSAC-A---RIGALMC---------GKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred HHHCCC-HHHHHHHHHHHHh-CCCCCHhHHHHHHHHH-h---hhchHHH---------hHHHHHHHHHhCCCccceechH
Confidence 999999 9999999999986 6999999999999998 6 6676655 3220 011
Q ss_pred HHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhh----hHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCC-CCC
Q psy767 581 LLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSF----LDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLS-PPN 655 (902)
Q Consensus 581 ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~----~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~-~~~ 655 (902)
+++.+.+.|+.+.+..+|.-. .|+..+|+.+|.+. ..++|+++|++| .+.|+.||..||..++.+|.+ +..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCCcccHHHHHHHHhhcChH
Confidence 566777788888888888765 56689999999544 499999999999 999999999999999999998 444
Q ss_pred CChHHHHHHHH-hcCCCCccchHHHHHHH-HHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHH
Q psy767 656 QVSGEVFSQLR-SVGVTIGSITSAYVVHM-LRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVC 733 (902)
Q Consensus 656 ~~~~~~~~~l~-~~g~~~~~~~~~~l~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 733 (902)
+...++++.|+ +.|+.|+..++.+|+.+ +|.|++++|.+++++|+..++..+|...+. +|+..++.+......+.+.
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~-ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN-ACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Confidence 44555899998 79999999999999999 799999999999999987788777766555 6788888887777766665
Q ss_pred hhhhcCCCcchhhhhhhhhhhhhhhhhhhHHHHH-HHHHHHHhhcCcchhhHHHHHHHHHHhccccccccch
Q psy767 734 ENWEKGEEGEKEEEGEEKTAGQLIDMDRIFAGNV-LLDIYKATRQDPNVVSHLEQLLNAFVEHAIPISAFSS 804 (902)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (902)
+ ++ |++...++ |.+++.+..+ .+...++.+.+++.|+.-++..+
T Consensus 685 ~-l~----------------------p~~~~~y~ll~n~ya~~g~----~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 685 E-LD----------------------PNSVGYYILLCNLYADAGK----WDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred h-hC----------------------CCCcchHHHHHHHHHHCCC----hHHHHHHHHHHHHcCCCCCCCcc
Confidence 2 22 22233333 4456654443 57789999999999999877654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-63 Score=611.75 Aligned_cols=599 Identities=13% Similarity=0.098 Sum_probs=518.0
Q ss_pred HHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 42 LVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
+..+++.+++.|++.|+++.|.++|++|.. ||+.+||++|.+|++.|++++|+++|++|...|+.||.+||
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~~---------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~ 190 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE---------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCCC---------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 455778999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------------hHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 122 QQLIS-----------------------------NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 122 ~~ll~-----------------------------~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
+++++ +|+||.+|+++|+++.|.++|++|.. ||.++||+||.+|++.
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFEN 266 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhC
Confidence 99887 38899999999999999999999975 5669999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~ 252 (902)
|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.+++..+.+.+..++..+|+.++..|+++|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhccc
Q psy767 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWL 332 (902)
Q Consensus 253 ~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (902)
++|. .||..+||+||.+|++.|++++|+++|++|...++.|+..++..++..+...+..+.+.+++.
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~--------- 413 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE--------- 413 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH---------
Confidence 9997 689999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCC
Q psy767 333 EGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSA 412 (902)
Q Consensus 333 ~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 412 (902)
.+.+.|+.|+..+|++||++|+++|++++|.++|++|... +..+|+++|.+|++.|+.++|+++|++|.. ++.|
T Consensus 414 ---~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~p 487 (857)
T PLN03077 414 ---LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKP 487 (857)
T ss_pred ---HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCC
Confidence 4899999999999999999999999999999999999864 677899999999999999999999999975 4999
Q ss_pred CHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHH
Q psy767 413 DAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAY 489 (902)
Q Consensus 413 d~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~ 489 (902)
|..| ++.+|++.|.++.+.+++..+.+. ++.++.. ....+|.+|+++|++++|.
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~----------------------~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF----------------------LPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce----------------------echHHHHHHHHcCCHHHHH
Confidence 9987 478889999999999999999875 3433321 1234889999999999999
Q ss_pred HHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhh
Q psy767 490 RIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCV 569 (902)
Q Consensus 490 ~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~ 569 (902)
++|+.+ . + +..+||++|.+|+++|+ .++|+++|++|.+.|+.||..||+++++++ + +.|.+++
T Consensus 545 ~~f~~~-~----~--d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~-~---~~g~v~e----- 607 (857)
T PLN03077 545 NQFNSH-E----K--DVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVTFISLLCAC-S---RSGMVTQ----- 607 (857)
T ss_pred HHHHhc-C----C--ChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCcccHHHHHHHH-h---hcChHHH-----
Confidence 999998 2 1 56789999999999999 999999999999999999999999999998 7 8999999
Q ss_pred hhccCcchHHHHHHHHH-HhhHHHhhhhhhhcccccccchhhhHHHH----HhhhHHHHHHHHHHHHHHhCCCCChHHHH
Q psy767 570 NQFRATPWKGELLKRFI-QAEDAACLQRITDLSTSIHGEVNSLYDLM----LSFLDAEVLRILQVAEAEFGVGSNTETLR 644 (902)
Q Consensus 570 ~~~~a~~~~~~ll~~m~-~~g~~~~~~~~~~~~~~i~p~~~~~~~li----~~~~~~~al~ll~~m~~~~g~~P~~~t~~ 644 (902)
|.. +|+.|. +.| +.|+..+|+.++ ++|.+++|.+++++| +++||..+|.
T Consensus 608 ----a~~----~f~~M~~~~g--------------i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~ 661 (857)
T PLN03077 608 ----GLE----YFHSMEEKYS--------------ITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWG 661 (857)
T ss_pred ----HHH----HHHHHHHHhC--------------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHH
Confidence 888 999998 566 666688999888 455599999999998 5899999999
Q ss_pred HhhhccCC-CCCCChHHHHHHHHhcCCCCcc-chHHHHH-HHHHhcCHHHHHHHHHHhhhhhc---h-hhccc------h
Q psy767 645 DYVLPVLS-PPNQVSGEVFSQLRSVGVTIGS-ITSAYVV-HMLRQHNLKEAALLAKSFRAHYA---K-VVVRP------V 711 (902)
Q Consensus 645 ~lv~~~~~-~~~~~~~~~~~~l~~~g~~~~~-~~~~~l~-~~~~~g~~~~a~~~~~~~~~~~~---~-~~~~~------~ 711 (902)
.++.+|.. ...+..+.+.+.+-+ ..|+. .++.++. .+++.|+|++|.++.+.|+...- + ..|.. .
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE
Confidence 99999866 333333334444444 45554 3333333 34799999999999999886411 1 11211 1
Q ss_pred hhhhhhccCCchhHHHHHHHHHhhhhcCC
Q psy767 712 LAVSYLRTQDLPSLVTVVRAVCENWEKGE 740 (902)
Q Consensus 712 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
|..+=+.+.+.+..-..++.+..++.+.+
T Consensus 740 f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 740 FLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred EecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 23333344445555566666666665433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=554.81 Aligned_cols=606 Identities=14% Similarity=0.130 Sum_probs=484.8
Q ss_pred cccccccCCCCCCCccchHHhhcHHHHHHHhccc--cchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCC-
Q psy767 2 VKLSSNVSDTATPVGITTEVSEATAEVTTVLGAL--GAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELD- 78 (902)
Q Consensus 2 ~~~~~~~~~~~~~~g~~~~~s~~~~~a~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g- 78 (902)
+|+..|..++..+.+.+...+..+.+-....... +.....+...|..+...+++.|++++|..+|++|.. .|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-----~gv 401 (1060)
T PLN03218 327 LDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-----RGL 401 (1060)
T ss_pred hhhccCCccccccccccchhhhccchhhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-----CCC
Confidence 4666677777777766644443333333222211 222234566777888889999999999999999987 56
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
++|+..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+ |.+|++.|+++.|.++|+.|.+.|+.||
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L------L~a~~k~g~~e~A~~lf~~M~~~Gl~pD 471 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML------MSVCASSQDIDGALRVLRLVQEAGLKAD 471 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH------HHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 467888899999999999999999999999974 999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|+.|...+..|+..+|+.++..
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 239 ILVSSDMASAEGILTMMSQ--AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~--~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
+++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~--------------------------- 604 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM--------------------------- 604 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------
Confidence 9999999999999999986 68999999999999999999999999999997
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcc---cHHHHHHHHHHcCC
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNG---DYLDIIHALAVSGH 393 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~---~~~~li~~~~~~g~ 393 (902)
|.+.|+.|+..+|+++|.+|++.|++++|.++|++|...+..| +|+++|.+|++.|+
T Consensus 605 --------------------M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 605 --------------------IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred --------------------HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 7778899999999999999999999999999999987665444 49999999999999
Q ss_pred hHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 394 GEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 394 ~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
.++|.++|++|.+ .|+.||..+ ++.+|++.|++++|.++|++|.+. ++.|+.
T Consensus 665 ~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~Pdv----------------------- 719 (1060)
T PLN03218 665 LDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTV----------------------- 719 (1060)
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCH-----------------------
Confidence 9999999999998 899999875 688999999999999999999864 455443
Q ss_pred chHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q psy767 471 DAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLI 549 (902)
Q Consensus 471 ~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 549 (902)
.+|+ +|.+|++.|++++|.++|++|...+..| +..+|+++|.+|++.|+ +++|.+++++|.+.|+.||..+|++|+
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~-le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDD-ADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455 7888999999999999999999888766 66899999999999999 999999999999999999999999999
Q ss_pred HHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhhHHHHHHHHHH
Q psy767 550 KAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQV 629 (902)
Q Consensus 550 ~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~~~~al~ll~~ 629 (902)
.. | . +.++. +.. +.+.+. .|.. .++... ....+.|+.+|++
T Consensus 797 gl--c---~-~~y~k---------a~~----l~~~v~----------~f~~---g~~~~~-------n~w~~~Al~lf~e 837 (1060)
T PLN03218 797 GL--C---L-RRFEK---------ACA----LGEPVV----------SFDS---GRPQIE-------NKWTSWALMVYRE 837 (1060)
T ss_pred HH--H---H-HHHHH---------Hhh----hhhhhh----------hhhc---cccccc-------cchHHHHHHHHHH
Confidence 54 3 1 11222 111 111111 1100 010011 1225679999999
Q ss_pred HHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHhc---CCCCccchHHHHHHHHHhcCHHHHHHHHHHhhhh--hc
Q psy767 630 AEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRSV---GVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAH--YA 704 (902)
Q Consensus 630 m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~--~~ 704 (902)
| .+.|+.||..||..++ +|+.. ..........+++. +..|+..++..++..+.. ..++|..+++.|... ++
T Consensus 838 M-~~~Gi~Pd~~T~~~vL-~cl~~-~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 838 T-ISAGTLPTMEVLSQVL-GCLQL-PHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred H-HHCCCCCCHHHHHHHH-HHhcc-cccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHHHHHHHcCCCC
Confidence 9 9999999999999988 55542 11233333444444 555556777777777522 247899999999864 22
Q ss_pred hhhccch--------hhhhhhccCCchhHHHHHHHHHhhhhcCCCcchhhh
Q psy767 705 KVVVRPV--------LAVSYLRTQDLPSLVTVVRAVCENWEKGEEGEKEEE 747 (902)
Q Consensus 705 ~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (902)
...++.. |..+.+ .--+...++.++.+|.. +++.|+
T Consensus 914 ~~~~~~~~~~~d~~~~~~~aa----~~~l~~wl~~~~~~~~~---g~~lp~ 957 (1060)
T PLN03218 914 SVSFKKSPIVIDAEELPVFAA----EVYLLTILKGLKHRLAA---GAKLPN 957 (1060)
T ss_pred CcccccCceEEEcccCcchhH----HHHHHHHHHHHHHHHhc---cCcCCc
Confidence 2211111 222111 11245567777888873 455665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-58 Score=553.79 Aligned_cols=522 Identities=14% Similarity=0.159 Sum_probs=452.5
Q ss_pred hhcHHHHHHHhccccchh--HHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy767 22 SEATAEVTTVLGALGAFL--VLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHT 99 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~ 99 (902)
.|++.+|.++++...... ..+...++.++..|++.|.+++|..+|..|.. ||..+||.+|.+|++.|++
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---------pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---------PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCcCH
Confidence 478899999988775443 35778888899999999999999999998876 9999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 100 FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 100 ~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
++|.++|++|.+.|+.||..+|+++ |.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsL------I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTL------ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH------HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhccc--CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy767 180 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP--QSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ 257 (902)
Q Consensus 180 ~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~ 257 (902)
++|++|...|+.||..||+.||.+|++.|++++|.++|++|.. .+..|+..+|++++..+++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976 57889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchH
Q psy767 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMM 337 (902)
Q Consensus 258 ~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 337 (902)
.|+.|+..+||++|.+|++.|++++|+++|++|...|+.|+..++..++..+.+.+..+.+..++. .|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~------------eM 675 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ------------DA 675 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH------------HH
Confidence 999999999999999999999999999999999999999998888888888888888888888875 58
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC---CCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCH
Q psy767 338 SQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS---SLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADA 414 (902)
Q Consensus 338 ~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 414 (902)
.+.|+.||..+|++||.+|+++|++++|.++|++|.. .|+..+|++||.+|++.|++++|.++|++|.. .|+.||.
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~ 754 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNT 754 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCH
Confidence 9999999999999999999999999999999999854 45555699999999999999999999999998 8999998
Q ss_pred HH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHH
Q psy767 415 AN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRI 491 (902)
Q Consensus 415 ~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l 491 (902)
.| ++.+|++.|++++|.++|+.|.+. ++.|+. .+++.+..+++ +++++|.++
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~-----------------------~tynsLIglc~-~~y~ka~~l 809 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNL-----------------------VMCRCITGLCL-RRFEKACAL 809 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCH-----------------------HHHHHHHHHHH-HHHHHHhhh
Confidence 87 578899999999999999999775 455443 35554444443 245555554
Q ss_pred HHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhh
Q psy767 492 VNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQ 571 (902)
Q Consensus 492 ~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~ 571 (902)
.+.+..-...+. ....+. .++|+.+|++|.+.|+.||..||+.++.++ | ..+....
T Consensus 810 ~~~v~~f~~g~~------------~~~n~w-~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl-~---~~~~~~~------- 865 (1060)
T PLN03218 810 GEPVVSFDSGRP------------QIENKW-TSWALMVYRETISAGTLPTMEVLSQVLGCL-Q---LPHDATL------- 865 (1060)
T ss_pred hhhhhhhhcccc------------ccccch-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-c---ccccHHH-------
Confidence 433332111010 011122 577999999999999999999999999554 5 6666666
Q ss_pred ccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhh--HHHHHHHHHHHHHHhCCCCChH
Q psy767 572 FRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFL--DAEVLRILQVAEAEFGVGSNTE 641 (902)
Q Consensus 572 ~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~--~~~al~ll~~m~~~~g~~P~~~ 641 (902)
+.. +++.|...+ ..|...+|+.+|.+.. .++|+.++++| .+.|+.|+..
T Consensus 866 --~~~----m~~~m~~~~--------------~~~~~~~y~~Li~g~~~~~~~A~~l~~em-~~~Gi~p~~~ 916 (1060)
T PLN03218 866 --RNR----LIENLGISA--------------DSQKQSNLSTLVDGFGEYDPRAFSLLEEA-ASLGVVPSVS 916 (1060)
T ss_pred --HHH----HHHHhccCC--------------CCcchhhhHHHHHhhccChHHHHHHHHHH-HHcCCCCCcc
Confidence 434 666666665 3444888999997654 57899999999 9999999985
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-55 Score=528.02 Aligned_cols=466 Identities=15% Similarity=0.154 Sum_probs=435.3
Q ss_pred HHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 44 LLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQ 123 (902)
Q Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ 123 (902)
..++.++.++++.|++++|..+|+.|.. ..++.||..+|++++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~----~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEA----GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678889999999999999999998876 345789999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 124 LISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCG 203 (902)
Q Consensus 124 ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a 203 (902)
+ |.+|+++|+++.|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 164 L------i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 164 V------LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred H------HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 9 9999999999999999999975 67799999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy767 204 YAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSV 283 (902)
Q Consensus 204 ~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A 283 (902)
|++.|..+.+.+++..+.+.+..++...++.++..|+++|++++|.++|++|. .+|.++||+||.+|++.|++++|
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997 68999999999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q psy767 284 RRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363 (902)
Q Consensus 284 ~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~ 363 (902)
+++|++|...|+.|+..|+..++..+.+.+..+.+.+++. .|.+.|+.||..+|++||++|+++|+++
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~------------~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA------------GLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH------------HHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999998886 5899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 364 SIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 364 ~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
+|.++|++|.. ++..+||+||.+|++.|+.++|.++|++|.+ .|+.||..| ++.+|++.|.+++|.++|+.|.+.
T Consensus 378 ~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 378 DARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999999976 4778899999999999999999999999998 999999998 478889999999999999999998
Q ss_pred cCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHc
Q psy767 441 ANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKT 519 (902)
Q Consensus 441 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~ 519 (902)
+++.|+. .+|+ ++.+|++.|++++|.++|+.|+.. | +..+|++|+.+|+..
T Consensus 456 ~g~~p~~-----------------------~~y~~li~~l~r~G~~~eA~~~~~~~~~~---p--~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 456 HRIKPRA-----------------------MHYACMIELLGREGLLDEAYAMIRRAPFK---P--TVNMWAALLTACRIH 507 (697)
T ss_pred cCCCCCc-----------------------cchHhHHHHHHhcCCHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHHc
Confidence 8888875 3444 788899999999999999887532 2 456899999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhh
Q psy767 520 NQPIDKVLAVCHRLTDENLHPR-AFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAE 589 (902)
Q Consensus 520 g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g 589 (902)
|. .+.|..++++|. ++.|+ ..+|+.|++.+ + +.|++++ |.. +++.|.+.|
T Consensus 508 g~-~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y-~---~~G~~~~---------A~~----v~~~m~~~g 558 (697)
T PLN03081 508 KN-LELGRLAAEKLY--GMGPEKLNNYVVLLNLY-N---SSGRQAE---------AAK----VVETLKRKG 558 (697)
T ss_pred CC-cHHHHHHHHHHh--CCCCCCCcchHHHHHHH-H---hCCCHHH---------HHH----HHHHHHHcC
Confidence 99 999999999986 45675 77999999998 8 9999999 888 999999999
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=493.08 Aligned_cols=499 Identities=12% Similarity=0.136 Sum_probs=414.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCC
Q psy767 78 DVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFP 156 (902)
Q Consensus 78 g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 156 (902)
...++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.+ +.+|++.++++.|.+++..|...|+.
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~l------l~a~~~~~~~~~a~~l~~~m~~~g~~ 155 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDAL------VEACIALKSIRCVKAVYWHVESSGFE 155 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHH------HHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 344567799999999999999999999999998864 78999999999 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
||..+||.||++|++.|++++|.++|++|. .||.++|++++.+|++.|++++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~------------------------ 207 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYRE------------------------ 207 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHH------------------------
Confidence 999999999999999999999999999996 4899999999999999998884
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
|.++|++|.+.|+.||..+|+.+|.+|++.|..+.+.+++..
T Consensus 208 -----------A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~--------------------------- 249 (697)
T PLN03081 208 -----------AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC--------------------------- 249 (697)
T ss_pred -----------HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH---------------------------
Confidence 555666677778889999999999999999999988888875
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHH
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEY 396 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~ 396 (902)
+.+.|+.||..+|++||++|+++|++++|.++|++|... +..+||+||.+|++.|++++
T Consensus 250 --------------------~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 250 --------------------VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred --------------------HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHH
Confidence 677888899999999999999999999999999998764 66779999999999999999
Q ss_pred HHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH
Q psy767 397 IDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA 473 (902)
Q Consensus 397 A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 473 (902)
|+++|++|.+ .|+.||..| ++.+|++.|++++|.+++..|.+. ++.++. .++
T Consensus 309 A~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~-----------------------~~~ 363 (697)
T PLN03081 309 ALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDI-----------------------VAN 363 (697)
T ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCe-----------------------eeh
Confidence 9999999988 899999887 578889999999999999999876 333332 244
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q psy767 474 N-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAH 552 (902)
Q Consensus 474 ~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 552 (902)
+ +|.+|+++|++++|.++|+.|... +..+||+||.+|+++|+ .++|+++|++|.+.|+.||..||+++++++
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~------d~~t~n~lI~~y~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRK------NLISWNALIAGYGNHGR-GTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC------CeeeHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4 889999999999999999999753 45789999999999999 999999999999999999999999999998
Q ss_pred cccccccCcchhhHhhhhhccCcchHHHHHHHHHH-hhHHHhhhhhhhcccccccchhhhHHHH----HhhhHHHHHHHH
Q psy767 553 VLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQ-AEDAACLQRITDLSTSIHGEVNSLYDLM----LSFLDAEVLRIL 627 (902)
Q Consensus 553 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~-~g~~~~~~~~~~~~~~i~p~~~~~~~li----~~~~~~~al~ll 627 (902)
+ +.|.+++ |.. +|+.|.+ .| +.|+..+|+.++ ++|.+++|.+++
T Consensus 437 -~---~~g~~~~---------a~~----~f~~m~~~~g--------------~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 437 -R---YSGLSEQ---------GWE----IFQSMSENHR--------------IKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred -h---cCCcHHH---------HHH----HHHHHHHhcC--------------CCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 7 9999999 988 9999986 46 666688898888 455599999998
Q ss_pred HHHHHHhCCCCChHHHHHhhhccCC-CCCCChHHHHHHHHhcCCCCcc-chHHHHHHH-HHhcCHHHHHHHHHHhhhhhc
Q psy767 628 QVAEAEFGVGSNTETLRDYVLPVLS-PPNQVSGEVFSQLRSVGVTIGS-ITSAYVVHM-LRQHNLKEAALLAKSFRAHYA 704 (902)
Q Consensus 628 ~~m~~~~g~~P~~~t~~~lv~~~~~-~~~~~~~~~~~~l~~~g~~~~~-~~~~~l~~~-~~~g~~~~a~~~~~~~~~~~~ 704 (902)
++| ++.||..+|..++.+|.. +..+....+.+.+. ++.|+. ..+.++... ++.|++++|.++++.|+...-
T Consensus 486 ~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 486 RRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 877 899999999999999987 44434444555554 555653 444555555 899999999999999986421
Q ss_pred ----hhhccc------hhhhhhhccCCchhHHHHHHHHHhhhhc
Q psy767 705 ----KVVVRP------VLAVSYLRTQDLPSLVTVVRAVCENWEK 738 (902)
Q Consensus 705 ----~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (902)
...|.. .|..+-....+.+..-+.++.+..++.+
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 111211 2333333444444444555555555543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-22 Score=252.64 Aligned_cols=582 Identities=12% Similarity=0.037 Sum_probs=327.8
Q ss_pred cccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHH
Q psy767 52 KWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLI 131 (902)
Q Consensus 52 ~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li 131 (902)
.+...|++++|...|..... ..+.+...+..+...+.+.|++++|...+..+.... ..+...+..+ .
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l------~ 370 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILK------YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLL------G 370 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH------H
Confidence 33444555555555554443 112234445555555555555555555555555432 2234444444 5
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
..+.+.|++++|.++|+.+.+.+ +.+...|..+...+...|++++|.+.|+.+.+.... +......++..+.+.|+++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 55555566666666665554433 234445555555555556666666666555544211 2223344455555666666
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|..+++.+.... +.+...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666665554432 2233344555555555666666666666655432 3344455555666666666666666666654
Q ss_pred cCCCCC--CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 292 SSLVNG--DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369 (902)
Q Consensus 292 ~~~~~p--~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~ 369 (902)
...... .+..+...+...++ .+.+..++. .+... .+.+...+..+...|.+.|++++|..++
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~------------~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGN---EEEAVAWLE------------KAAEL-NPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCC---HHHHHHHHH------------HHHHh-CccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 432111 11222222222222 222222211 11111 1234556667777777777777777777
Q ss_pred HHcCC-CCCc-ccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q psy767 370 AQNGS-SLVN-GDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGE 446 (902)
Q Consensus 370 ~~m~~-~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~ 446 (902)
+++.. .+.. ..|..+...|...|++++|.+.|+++.+...-.|..+. +...+...|++++|..+++++.+.. |.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~ 667 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK---PD 667 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Confidence 77532 2222 23677777777777777787777777662222222222 3444557777888877777776531 22
Q ss_pred cccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHH
Q psy767 447 QLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKV 526 (902)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A 526 (902)
.. .....+...+...|++++|.++++.+..... .+...+..+...+...|+ +++|
T Consensus 668 ~~---------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~-~~~A 722 (899)
T TIGR02917 668 NT---------------------EAQIGLAQLLLAAKRTESAKKIAKSLQKQHP---KAALGFELEGDLYLRQKD-YPAA 722 (899)
T ss_pred CH---------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---CChHHHHHHHHHHHHCCC-HHHH
Confidence 11 0123455667888888888888888877642 244567778888888888 8888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhccccccc
Q psy767 527 LAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHG 606 (902)
Q Consensus 527 ~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p 606 (902)
+..++++...+ |+..++..+..++ . ..|+.++ |.. .++.+.+.. +-+
T Consensus 723 ~~~~~~~~~~~--~~~~~~~~l~~~~-~---~~g~~~~---------A~~----~~~~~l~~~-------------~~~- 769 (899)
T TIGR02917 723 IQAYRKALKRA--PSSQNAIKLHRAL-L---ASGNTAE---------AVK----TLEAWLKTH-------------PND- 769 (899)
T ss_pred HHHHHHHHhhC--CCchHHHHHHHHH-H---HCCCHHH---------HHH----HHHHHHHhC-------------CCC-
Confidence 88888887753 5556666666665 5 7788888 666 666666543 112
Q ss_pred chhhhHHHH----HhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHhc-CCCCcc--chHHH
Q psy767 607 EVNSLYDLM----LSFLDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRSV-GVTIGS--ITSAY 679 (902)
Q Consensus 607 ~~~~~~~li----~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~~-g~~~~~--~~~~~ 679 (902)
...+..+. ..+..++|++.++++ .+.. .++...+..+.......... +++..+++. ...|+. ....+
T Consensus 770 -~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~-p~~~~~~~~l~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 770 -AVLRTALAELYLAQKDYDKAIKHYRTV-VKKA-PDNAVVLNNLAWLYLELKDP---RALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred -HHHHHHHHHHHHHCcCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHhcCcH---HHHHHHHHHHhhCCCCcHHHHHH
Confidence 22222221 244499999999999 4443 23456666665555543221 233333331 223333 33344
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhh-hchhhccchhhhhhhccCCchhHHHHHHHHH
Q psy767 680 VVHMLRQHNLKEAALLAKSFRAH-YAKVVVRPVLAVSYLRTQDLPSLVTVVRAVC 733 (902)
Q Consensus 680 l~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 733 (902)
.....+.|++++|.+.+++.... .....+...++..+.+.|++++.+++++.+.
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44457899999999999988763 3344455557778999999999999888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-21 Score=244.68 Aligned_cols=477 Identities=14% Similarity=0.039 Sum_probs=254.2
Q ss_pred hHHhhcHHHHHHHhcccc-chhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCC
Q psy767 19 TEVSEATAEVTTVLGALG-AFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNE 97 (902)
Q Consensus 19 ~~~s~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g 97 (902)
....|.+++|...+.... .........+..+...+...|++++|...|+.+... .+.+...|..+...+...|
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~ 173 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI------DPRSLYAKLGLAQLALAEN 173 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHCC
Confidence 444577777777775443 334445556666777777788888888888777651 1234556777777777788
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q psy767 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMAS 177 (902)
Q Consensus 98 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~ 177 (902)
++++|..+++++.+.. +++...+..+ ...+...|++++|...|+.....+ +.+..++..++..+...|++++
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLK------GDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHH------HHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8888888887776543 3355566666 667777777777777777776654 4566677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc------------------------------
Q psy767 178 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF------------------------------ 227 (902)
Q Consensus 178 A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~------------------------------ 227 (902)
|...++.+.+.... +...+......+...|++++|...|+.+.......
T Consensus 246 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 324 (899)
T TIGR02917 246 AEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY 324 (899)
T ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777665321 22222223333445566666666665554433221
Q ss_pred ---chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC--HHHH
Q psy767 228 ---LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD--YLDI 302 (902)
Q Consensus 228 ---~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~--~~tl 302 (902)
.......+...+...|++++|...+..+.... +.+...|+.+...|.+.|++++|.++|+++........ +..+
T Consensus 325 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 403 (899)
T TIGR02917 325 APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403 (899)
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 11222223333334444444444444444332 23344444555555555555555555554433211100 1111
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC-CCc-c
Q psy767 303 IHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQNGSS-LVN-G 379 (902)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~-~~~-~ 379 (902)
...+...++.. .+...+. .... ..| +...+..++..|.+.|++++|..+++++... |.. .
T Consensus 404 ~~~~~~~~~~~---~A~~~~~------------~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 466 (899)
T TIGR02917 404 GISKLSQGDPS---EAIADLE------------TAAQ--LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS 466 (899)
T ss_pred HHHHHhCCChH---HHHHHHH------------HHHh--hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH
Confidence 11111122111 1111100 0111 112 2234445556666666666666666664221 222 2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHH
Q psy767 380 DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLV 455 (902)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~ 455 (902)
.|..+...+...|++++|.+.|+++.+ ..|+... +...+...|++++|..+++.+..... ...
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~------- 533 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP---KNL------- 533 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CcH-------
Confidence 356666666677777777777766655 3444332 23344566677777777766655321 110
Q ss_pred HhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 456 RHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
.....+...+.+.|+.++|..+|+.+.... +.+...+..+...+...|+ +++|+.+++++..
T Consensus 534 --------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~ 595 (899)
T TIGR02917 534 --------------RAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQ-LKKALAILNEAAD 595 (899)
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 012224444556666666666666655442 1123445556666666666 6666666666654
Q ss_pred CCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 536 ENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 536 ~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.. ..+..+|..+..++ + ..|+.++
T Consensus 596 ~~-~~~~~~~~~l~~~~-~---~~~~~~~ 619 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQ-L---AAGDLNK 619 (899)
T ss_pred cC-CCCHHHHHHHHHHH-H---HcCCHHH
Confidence 32 23445555555554 4 5555555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4318|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=233.36 Aligned_cols=415 Identities=27% Similarity=0.328 Sum_probs=326.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy767 103 TDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGIL 182 (902)
Q Consensus 103 ~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~ 182 (902)
..++..|...|+.|+.+||.++ |.-||..|+++.|- +|..|.-+..+.+...|+.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsL------iarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSL------IARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHH------HHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 3567788889999999999999 99999999999999 9999999988889999999999999999988876
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q psy767 183 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP 262 (902)
Q Consensus 183 ~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~p 262 (902)
.|...||..|+.+|...||+.. |+.
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~----fe~------------------------------------------- 104 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLIL----FEV------------------------------------------- 104 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHH----HHH-------------------------------------------
Confidence 7888999999999999998862 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCC
Q psy767 263 SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL 342 (902)
Q Consensus 263 d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~ 342 (902)
+.+
T Consensus 105 --------------------veq--------------------------------------------------------- 107 (1088)
T KOG4318|consen 105 --------------------VEQ--------------------------------------------------------- 107 (1088)
T ss_pred --------------------HHH---------------------------------------------------------
Confidence 000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHH
Q psy767 343 EPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLI 422 (902)
Q Consensus 343 ~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~ 422 (902)
+...++..+...|.......++..+.-..++.||..
T Consensus 108 -------------------------------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~------- 143 (1088)
T KOG4318|consen 108 -------------------------------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE------- 143 (1088)
T ss_pred -------------------------------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH-------
Confidence 111233344444444444445544433355666444
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q psy767 423 NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANIN 502 (902)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~ 502 (902)
+.+..+.-.|.++.+.+++..+|......
T Consensus 144 ---------------------------------------------------n~illlv~eglwaqllkll~~~Pvsa~~~ 172 (1088)
T KOG4318|consen 144 ---------------------------------------------------NAILLLVLEGLWAQLLKLLAKVPVSAWNA 172 (1088)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence 44444555566666666666666554333
Q ss_pred CCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHH
Q psy767 503 GEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELL 582 (902)
Q Consensus 503 ~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll 582 (902)
+ +-.+++.+.....|+++-..+++...+ .|++.+|..++.+. . .+|+++. |.+ ++
T Consensus 173 p-----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a-l---aag~~d~---------Ak~----ll 227 (1088)
T KOG4318|consen 173 P-----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA-L---AAGDVDG---------AKN----LL 227 (1088)
T ss_pred h-----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH-H---hcCchhh---------HHH----HH
Confidence 1 122588888888888888888888877 69999999999887 6 8999999 988 99
Q ss_pred HHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhh-HHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHH
Q psy767 583 KRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFL-DAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEV 661 (902)
Q Consensus 583 ~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~-~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~ 661 (902)
.+|++.| ++++ +|+||+++.+-. ...+..+++.| ++.|+.|+.+|+..++.+|+. + |+
T Consensus 228 ~emke~g------------fpir--~HyFwpLl~g~~~~q~~e~vlrgm-qe~gv~p~seT~adyvip~l~--N--~~-- 286 (1088)
T KOG4318|consen 228 YEMKEKG------------FPIR--AHYFWPLLLGINAAQVFEFVLRGM-QEKGVQPGSETQADYVIPQLS--N--GQ-- 286 (1088)
T ss_pred HHHHHcC------------CCcc--cccchhhhhcCccchHHHHHHHHH-HHhcCCCCcchhHHHHHhhhc--c--hh--
Confidence 9999999 9999 999999998654 77788888888 999999999999999999998 2 33
Q ss_pred HHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCC
Q psy767 662 FSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEE 741 (902)
Q Consensus 662 ~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
-...+.|...+....+-+++++-.| ..|.+++++....+....++++|..++...+ ..|+...+.+++ ++
T Consensus 287 -t~~~~e~sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~--aiws~c~~l~hQ-----gk 356 (1088)
T KOG4318|consen 287 -TKYGEEGSQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILE--AIWSMCEKLRHQ-----GK 356 (1088)
T ss_pred -hhhcccccchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccch--HHHHHHHHHHHc-----CC
Confidence 4556677777777777777776566 7888899988888899999999999988888 777777777761 11
Q ss_pred cchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhcC--cchhhHHHHHHHHHHhccccccccchHHHHhhhhhhhhHHH
Q psy767 742 GEKEEEGEEKTAGQLIDMDRIFAGNVLLDIYKATRQD--PNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGSALTSDI 819 (902)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (902)
+-+.+.++.+++....++... ++...+++|++++.+.+...+-..+.++|++.++++.|+.+
T Consensus 357 ----------------~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~v 420 (1088)
T KOG4318|consen 357 ----------------GEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRV 420 (1088)
T ss_pred ----------------CchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHH
Confidence 224567777777777776666 77888999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy767 820 SKALGAL 826 (902)
Q Consensus 820 ~~~l~~~ 826 (902)
+++|.++
T Consensus 421 sell~~l 427 (1088)
T KOG4318|consen 421 SELLENL 427 (1088)
T ss_pred HHHHHHh
Confidence 9998776
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-15 Score=186.21 Aligned_cols=611 Identities=12% Similarity=0.023 Sum_probs=359.5
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHH---------------
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHY--------------- 86 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~y--------------- 86 (902)
.++++.|.+.+..+....+.+.-+...+...+...|+.++|...++.... +.|+...+
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~-------~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ-------LAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHhcCCchh
Confidence 46777777777766655666666667777777888888888888888876 33333221
Q ss_pred --HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 87 --NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 87 --n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
-.....+...|++++|...|+.+.... +|+.. ..... .......|+.++|.+.|+.+.+.. |-+...+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~------~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYW------RLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHH------HHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 223345777888888888888887543 33321 11111 112224588888888888887764 55667778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHH-----------------HHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPS--AQT-----------------YTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t-----------------y~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
.+...+...|+.++|+..|+++........ ... +...+..+-.......+...+.......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 888888888888888888888765421000 001 1111111111112233444443332221
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHH
Q psy767 225 ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIH 304 (902)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~ 304 (902)
..+... .......+...|++++|...|++..+.. +.+..++..|...|.+.|++++|+..|++...........
T Consensus 266 ~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~---- 339 (1157)
T PRK11447 266 ADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR---- 339 (1157)
T ss_pred cCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch----
Confidence 112111 1122344556899999999999988764 4477888999999999999999999998854432111000
Q ss_pred HHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc-HH
Q psy767 305 ALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-YL 382 (902)
Q Consensus 305 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~ 382 (902)
.....+.. .........+...+.+.|++++|...|++. ...|..+. +.
T Consensus 340 -----------~~~~~ll~-------------------~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~ 389 (1157)
T PRK11447 340 -----------DKWESLLK-------------------VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389 (1157)
T ss_pred -----------hHHHHHHH-------------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 00000000 000001122345678999999999999983 44444333 66
Q ss_pred HHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH---HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhh
Q psy767 383 DIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH---IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMV 459 (902)
Q Consensus 383 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~---i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~ 459 (902)
.+...+...|++++|++.|++..+ ..|+.... +..+...++.++|..+++.+......... .....
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~---~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~------~~~~~-- 458 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALR---MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID------DIERS-- 458 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH------HHHHH--
Confidence 788999999999999999999988 56765432 22233567889999888765432100000 00000
Q ss_pred hcCCCCCccccc-hHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q psy767 460 KTNQPGVGYSAD-AANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENL 538 (902)
Q Consensus 460 ~~~~~~~g~~~~-~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~ 538 (902)
.... .......+...|++++|.+.|++..... |.++..+..+...|.+.|+ .++|+..++++.+.
T Consensus 459 --------l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~-~~~A~~~l~~al~~-- 524 (1157)
T PRK11447 459 --------LQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQ-RSQADALMRRLAQQ-- 524 (1157)
T ss_pred --------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--
Confidence 0001 1224445788999999999999998763 3345567788889999999 99999999998764
Q ss_pred CCChh-hHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccc--cchhhhHHHH
Q psy767 539 HPRAF-NLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIH--GEVNSLYDLM 615 (902)
Q Consensus 539 ~Pd~~-t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~--p~~~~~~~li 615 (902)
.|+.. .+..+.-.+ . ..|+.++ |.. .++.+.... ..+.+..+...+. ........+.
T Consensus 525 ~P~~~~~~~a~al~l-~---~~~~~~~---------Al~----~l~~l~~~~---~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 525 KPNDPEQVYAYGLYL-S---GSDRDRA---------ALA----HLNTLPRAQ---WNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred CCCCHHHHHHHHHHH-H---hCCCHHH---------HHH----HHHhCCchh---cChhHHHHHHHHhhhHHHHHHHHHH
Confidence 34322 222111111 2 5677777 555 444432211 0000000000000 0001122333
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHh-cCCCCcc--chHHHHHHHHHhcCHHHH
Q psy767 616 LSFLDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRS-VGVTIGS--ITSAYVVHMLRQHNLKEA 692 (902)
Q Consensus 616 ~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~-~g~~~~~--~~~~~l~~~~~~g~~~~a 692 (902)
..+..++|+++++.- .++...+..+........+ .+++++.+++ ....|+. ....+...+...|++++|
T Consensus 585 ~~G~~~eA~~~l~~~------p~~~~~~~~La~~~~~~g~--~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ------PPSTRIDLTLADWAQQRGD--YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HCCCHHHHHHHHHhC------CCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 455588888887722 2333333333333333222 3344444443 2233443 555666666899999999
Q ss_pred HHHHHHhhhh-hchhhccchhhhhhhccCCchhHHHHHHHHHhhh
Q psy767 693 ALLAKSFRAH-YAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENW 736 (902)
Q Consensus 693 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
++.++..... .+.......++.++...++++..++.++.+....
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999976653 3344444556777889999999999999887443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-16 Score=174.55 Aligned_cols=290 Identities=14% Similarity=0.088 Sum_probs=196.2
Q ss_pred HHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHH
Q psy767 92 VYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---EGVFNALIYG 168 (902)
Q Consensus 92 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~yn~Li~~ 168 (902)
.+...|++++|...|.++.+.+ +.+..++..+ ...+...|++++|..+++.+...+..++ ...|..+...
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLAL------GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHH------HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4456677788888888877653 1244566667 7777788888888888877766432221 2456777777
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccch----hhHHHHHHHHHhcCC
Q psy767 169 HSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLC----FSFQLTNLLILVSSD 244 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~ 244 (902)
|.+.|++++|+.+|+++.+.. .++..++..++..+.+.|++++|.+.++.+...+..... ..+..+...+...|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 888888888888888877652 335667777778888888888888888777665433221 123344455566788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy767 245 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCF 324 (902)
Q Consensus 245 ~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~ 324 (902)
+++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++..
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------------- 242 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-------------------------------- 242 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------
Confidence 888888888877653 33456777777888888888888888887422
Q ss_pred hhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCChHHHHHHHHH
Q psy767 325 VNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGDYLDIIHALAVSGHGEYIDEIISK 403 (902)
Q Consensus 325 ~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 403 (902)
.+......+++.++.+|.+.|++++|...++++ ...|....+..++..+.+.|++++|.+++++
T Consensus 243 ---------------~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 243 ---------------QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred ---------------HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 111112355677788888888888888888774 2334444467777888888888888888888
Q ss_pred cccCCCCCCCHHHH---HHHHHH---cCCHHHHHHHHHHHHhc
Q psy767 404 IQPGVGYSADAANH---IYHLIN---KGQIDAAYRIVNTLARS 440 (902)
Q Consensus 404 m~~~~g~~pd~~t~---i~~l~~---~g~~~~A~~~~~~m~~~ 440 (902)
+.+ ..|+..++ +..+.. .|+.+++..+++.|.+.
T Consensus 308 ~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 308 QLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 776 46776543 333332 45788888888877764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-14 Score=162.11 Aligned_cols=311 Identities=15% Similarity=0.104 Sum_probs=250.8
Q ss_pred HHHHHHHHH-HHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC-
Q psy767 40 VLLVLLFVY-LNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN- 117 (902)
Q Consensus 40 ~~~~~~~~~-l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd- 117 (902)
..+.+...+ ....+...|++++|...|..+... -+.+..+|..+...|...|++++|..+++.+...+..++
T Consensus 31 ~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 104 (389)
T PRK11788 31 ESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE 104 (389)
T ss_pred hhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH
Confidence 344444444 577788999999999999999981 233556899999999999999999999999987543322
Q ss_pred --HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-
Q psy767 118 --RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA- 194 (902)
Q Consensus 118 --~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~- 194 (902)
...+..+ ...|.+.|+++.|..+|+.+.+.. +++..+++.++..|.+.|++++|.+.|+.+.+.+..+..
T Consensus 105 ~~~~~~~~L------a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 105 QRLLALQEL------GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred HHHHHHHHH------HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 2446666 999999999999999999998764 567889999999999999999999999999987543322
Q ss_pred ---HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 195 ---QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLM 271 (902)
Q Consensus 195 ---~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI 271 (902)
..|..+...+.+.|++++|.+.|+++.+.... ....+..+..++...|++++|.++++++...+......+++.++
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 24556777889999999999999999875432 34566677788889999999999999999764333356789999
Q ss_pred HHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHH
Q psy767 272 CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTK 351 (902)
Q Consensus 272 ~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ 351 (902)
.+|...|++++|...++++ .+. .|+...+..
T Consensus 257 ~~~~~~g~~~~A~~~l~~~-----------------------------------------------~~~--~p~~~~~~~ 287 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRA-----------------------------------------------LEE--YPGADLLLA 287 (389)
T ss_pred HHHHHcCCHHHHHHHHHHH-----------------------------------------------HHh--CCCchHHHH
Confidence 9999999999999999873 222 467677789
Q ss_pred HHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHH---cCChHHHHHHHHHcccCCCCCCCH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAV---SGHGEYIDEIISKIQPGVGYSADA 414 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~g~~pd~ 414 (902)
+...|.+.|++++|..+|++ +...|....++.++..+.. .|+.+++..++++|.+ .++.|+.
T Consensus 288 la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~p 353 (389)
T PRK11788 288 LAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG-EQLKRKP 353 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH-HHHhCCC
Confidence 99999999999999999987 5556777778888877775 5588999999999998 6666654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-14 Score=179.34 Aligned_cols=456 Identities=14% Similarity=0.052 Sum_probs=309.3
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHh-
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISN- 127 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~- 127 (902)
...+...|++++|...|+.... --+.+...+..+...|.+.|++++|...|++..+..... +...|..++..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVR------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 4455678999999999999887 123377889999999999999999999999998864322 22222222210
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 128 -----SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202 (902)
Q Consensus 128 -----~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~ 202 (902)
..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|++.|++..+.. ..+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 112456788999999999999998875 5567788889999999999999999999998863 224556667777
Q ss_pred HHHHcCChhHHHHHHHhcccCCCc--------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 203 GYAKHGDMDSIKTKIPSLKPQSEL--------FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 274 (902)
Q Consensus 203 a~~~~g~~~~a~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~ 274 (902)
.|. .++.++|..+++.+...... .....+......+...|++++|...|++..+.. +-+...+..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 46789999888876543211 112344556667778999999999999998764 33566788899999
Q ss_pred HHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHH
Q psy767 275 AKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMC 354 (902)
Q Consensus 275 ~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~ 354 (902)
.+.|++++|...|++............+..++... ..+..+++...+.-+.. ..|. ..+...........+..+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~-~~~~~~~Al~~l~~l~~-~~~~--~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS-GSDRDRAALAHLNTLPR-AQWN--SNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHhCCc-hhcC--hhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999976533222222222222221 12233333222211000 0000 00000000111122345677
Q ss_pred HHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHH
Q psy767 355 GYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAA 430 (902)
Q Consensus 355 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A 430 (902)
.+...|+.++|..+++.-. .....+..+...+...|++++|++.|++..+ ..|+... +...+...|+.++|
T Consensus 582 ~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 8899999999999998422 1223367788999999999999999999988 5676543 45667799999999
Q ss_pred HHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---ccc
Q psy767 431 YRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGE---QLP 507 (902)
Q Consensus 431 ~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~---~~~ 507 (902)
...++...+. .|..+. ....+...+...|++++|.++++.+.......+. ...
T Consensus 657 ~~~l~~ll~~---~p~~~~---------------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 657 RAQLAKLPAT---ANDSLN---------------------TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred HHHHHHHhcc---CCCChH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 9999977653 222111 1233455578999999999999998875422211 123
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCCCCC----hhhHHHHH
Q psy767 508 VGGFLVRHMVKTNQPIDKVLAVCHR-LTDENLHPR----AFNLAVLI 549 (902)
Q Consensus 508 ~~n~li~~~~~~g~~~~~A~~l~~~-m~~~g~~Pd----~~t~~~ll 549 (902)
.+..+...+...|+ +++|+..|++ |...|+.|+ ..+++.++
T Consensus 713 ~~~~~a~~~~~~G~-~~~A~~~y~~Al~~~~~~~~~p~~~~~~~~l~ 758 (1157)
T PRK11447 713 VLRDAARFEAQTGQ-PQQALETYKDAMVASGITPTRPQDNDTFTRLT 758 (1157)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhcCCCCCCCCCchHHHHHh
Confidence 45556777888999 9999999999 556666543 23455544
|
|
| >KOG4318|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-13 Score=155.64 Aligned_cols=647 Identities=12% Similarity=0.037 Sum_probs=348.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC
Q psy767 74 TGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK 153 (902)
Q Consensus 74 ~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~ 153 (902)
++..|+.|+-+||..+|.-|+..|+.+.|- +|.-|.-.....+...|+.+ +.+..+.++.+.+.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~l------v~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGL------VASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHH------HhcccccccccCCC---------
Confidence 345788999999999999999999998888 88888887777788888888 88888888877776
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHH----HCCC-----------------CCCHHHHHHHHHHHHHcCC
Q psy767 154 TFPISEGVFNALIYGHSQANDMAS---AEGILTMMS----QAGL-----------------EPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 154 ~~~p~~~~yn~Li~~~~~~g~~~~---A~~l~~~M~----~~g~-----------------~pd~~ty~~ll~a~~~~g~ 209 (902)
.|...+|+.|..+|.+.||+.. +.+.+.... ..|+ -||. ..++.-....|.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHH
Confidence 6777899999999999998654 333222221 1222 1222 223444556677
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILV-SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLA 288 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~ 288 (902)
|+.+.+++..+........... ++.. .-...-.+++.+......-.|+..+|.+++..-.-+|+.+.|..++.
T Consensus 155 waqllkll~~~Pvsa~~~p~~v------fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQV------FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHH------HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 7888888776654322221111 1222 22223333444433332116999999999999999999999999999
Q ss_pred HhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 289 QSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368 (902)
Q Consensus 289 ~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~ 368 (902)
+|.+.|......-+-.+++..+...-.+.+. +.|...|+.|+..|+...+..+...|....+...
T Consensus 229 emke~gfpir~HyFwpLl~g~~~~q~~e~vl---------------rgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLGINAAQVFEFVL---------------RGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred HHHHcCCCcccccchhhhhcCccchHHHHHH---------------HHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 9999998877665555555544333333332 3589999999999999988888875552222111
Q ss_pred HHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc
Q psy767 369 LAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQL 448 (902)
Q Consensus 369 ~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~ 448 (902)
. +....+++-+.+-+..| ..|.+.++.-....-+......|+.+. +
T Consensus 294 s------q~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~----------------------d---- 339 (1088)
T KOG4318|consen 294 S------QLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGT----------------------D---- 339 (1088)
T ss_pred c------chhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhcc----------------------c----
Confidence 1 01111222222222222 233333322211000000000011110 0
Q ss_pred cchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCC-CCCccchHHHHHHHHHHcCCCHHHHH
Q psy767 449 PVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANI-NGEQLPVGGFLVRHMVKTNQPIDKVL 527 (902)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~-~~~~~~~~n~li~~~~~~g~~~~~A~ 527 (902)
+....+.++.-+..+|+-++..++...+...... .+..+..|..++..|
T Consensus 340 -------------------~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy----------- 389 (1088)
T KOG4318|consen 340 -------------------ILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY----------- 389 (1088)
T ss_pred -------------------cchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH-----------
Confidence 0001233333344467777777777776654321 112233343333333
Q ss_pred HHHHHHHHCCCCCChhhHH--HHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccc
Q psy767 528 AVCHRLTDENLHPRAFNLA--VLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIH 605 (902)
Q Consensus 528 ~l~~~m~~~g~~Pd~~t~~--~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~ 605 (902)
|.+....- +...|. ..++-. + ....+.. ..+ ++.....+-.+....++.. +...+
T Consensus 390 --Frr~e~~~---~~~i~~~~qgls~~-l---~se~tp~---------vse----ll~~lrkns~lr~lv~Lss-~Eler 446 (1088)
T KOG4318|consen 390 --FRRIERHI---CSRIYYAGQGLSLN-L---NSEDTPR---------VSE----LLENLRKNSFLRQLVGLSS-TELER 446 (1088)
T ss_pred --HHHHHhhH---HHHHHHHHHHHHhh-h---chhhhHH---------HHH----HHHHhCcchHHHHHhhhhH-HHHhc
Confidence 22222110 001111 000000 0 0011111 000 1222211111112222111 13345
Q ss_pred cchhhhHHHHHhhh----HHHHHHHHHHHHHHhCCCCChHHHHHhhhccCCCCCCChHHHHHHHHhcCCCCccchHHHHH
Q psy767 606 GEVNSLYDLMLSFL----DAEVLRILQVAEAEFGVGSNTETLRDYVLPVLSPPNQVSGEVFSQLRSVGVTIGSITSAYVV 681 (902)
Q Consensus 606 p~~~~~~~li~~~~----~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~ 681 (902)
+|.+|+++...- -+.-+.+..+| ....+..+.++|.++..+-.....-..-+..+.+++++..++.+.+.-..
T Consensus 447 --~he~~~~~~h~irdi~~ql~l~l~se~-n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s 523 (1088)
T KOG4318|consen 447 --SHEPWPLIAHLIRDIANQLHLTLNSEY-NKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDES 523 (1088)
T ss_pred --ccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchh
Confidence 667776664332 44456677777 77777778888887777633311111224566666666666654444444
Q ss_pred HHHHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCCcchhhhhhhhhhhhhh-hhh
Q psy767 682 HMLRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEEGEKEEEGEEKTAGQLI-DMD 760 (902)
Q Consensus 682 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 760 (902)
..+..++.-+..+++.++...++...+.+...- ..-+.....+.+++-+-.-.+ .+ .++. ..-
T Consensus 524 ~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks--~a~n~~~~a~~~f~~lns~a~---ag-----------qqe~Lkkl 587 (1088)
T KOG4318|consen 524 IHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS--SAENEPLVAIILFPLLNSGAP---AG-----------QQEKLKKL 587 (1088)
T ss_pred hhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH--HhhCCchHHHHHHHHHhhhhh---cc-----------CHHHHHHH
Confidence 444444444444444444443333333222211 111122222333333322111 00 0000 223
Q ss_pred hhHHHHHHHHH-HH----HhhcCcchhhHHHHHHHHHHhccccccccchHHHHhhhhh------hhhHHHHHHHhh-hhc
Q psy767 761 RIFAGNVLLDI-YK----ATRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGS------ALTSDISKALGA-LTS 828 (902)
Q Consensus 761 ~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~-~~~ 828 (902)
.++++++.+.. .+ ..+.+ . ....+-+.+...+-+.+++-..+.+.....+ ..+.++++.+++ +..
T Consensus 588 ~d~lvslgl~etgPl~~vhLrkd--d-~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~ 664 (1088)
T KOG4318|consen 588 ADILVSLGLSETGPLWMVHLRKD--D-QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKL 664 (1088)
T ss_pred HHHHHHhhhhhcccceEEEeecc--c-hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhc
Confidence 45666666655 11 22222 2 2355666777788889999999988887743 356678888887 888
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCcchhhhHHHhhc--CCCcc
Q psy767 829 DDLMPQPLQYVPSMFIPRGQPLRCLDKDPLRRWSCDQLLR--HPYFN 873 (902)
Q Consensus 829 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 873 (902)
|.+..+.+.- ..++....|+++++.|..++++-|++++ ||-|.
T Consensus 665 g~~~~a~di~--etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~ 709 (1088)
T KOG4318|consen 665 GSCVDAGDIT--ETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGK 709 (1088)
T ss_pred ccccchhhcc--ccCcccccCCCccccccCccccHHHHHHHHhHhHH
Confidence 8888776542 2456677888999999999999998875 44443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-11 Score=151.11 Aligned_cols=597 Identities=10% Similarity=-0.024 Sum_probs=361.7
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCC-CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPL-DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNS 128 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~p-d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 128 (902)
...+...|++++|...|+.... +.| +...+..+...|...|++++|+..+++..+. .|+...|..+
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~-------~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~---- 117 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQ-------QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERS---- 117 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH----
Confidence 4444556999999999999987 344 4567889999999999999999999999865 5655555444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q psy767 129 KLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG--------HSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200 (902)
Q Consensus 129 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~--------~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 200 (902)
+ +..++.++|..+++++.... |-+..++..+... |.+. ++|.+.++ .......|+..+....
T Consensus 118 --L---a~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~ 187 (987)
T PRK09782 118 --L---AAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTD 187 (987)
T ss_pred --H---HHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHH
Confidence 3 22299999999999998875 4456666666665 6666 55555555 4444344556655554
Q ss_pred -HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q psy767 201 -MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV-SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 278 (902)
Q Consensus 201 -l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g 278 (902)
...|.+.++|++|.+++.++.+.+..... ....+..++.. .++ +.+..+++. .+.-|...+.++...|.+.|
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~-~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQNTLSAA-ERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCC
Confidence 89999999999999999999998765543 34444446665 466 777777553 33578999999999999999
Q ss_pred CHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCcccHHH--------------HHHHHHHhhhhhcccccchHHhcCCC
Q psy767 279 DMDSVRRLLAQSGSSLVN-GDYLDIIHALAVSGHGEYIDE--------------VSAIVCFVNICFHWLEGPMMSQAGLE 343 (902)
Q Consensus 279 ~~~~A~~lf~~m~~~~~~-p~~~tl~~~l~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~m~~~g~~ 343 (902)
+.++|.++++++...... |...+.+-.+.+.+....... ...+......-..+....++ ..+.
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 339 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL--LATL 339 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH--hcCC
Confidence 999999999998776444 555566656665554421100 01111111111111111112 2344
Q ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHHHHHcCCC-CCcc-cHHHHHHHHHHcCChHHHHHHHHHcccC-CCCCC-CHH--
Q psy767 344 PSAQTYTKLMCGYA--KHGDMDSIRRLLAQNGSS-LVNG-DYLDIIHALAVSGHGEYIDEIISKIQPG-VGYSA-DAA-- 415 (902)
Q Consensus 344 p~~~t~~~Li~~y~--~~g~~~~A~~~~~~m~~~-~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~p-d~~-- 415 (902)
|.... ..+..+. ..+...++...++.|-.. +... ..-.+.....+.|+.++|..+|+..... ..-.+ ...
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 44332 1222222 224445555444443222 3222 2444555566888888888888887651 11111 111
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHhcc------CCCCCcccchhhHHHhhhhcCCCC-Cc--cccchHHHHHHHHhcC
Q psy767 416 NHIYHLINKGQ---IDAAYRIVNTLARSA------NINGEQLPVGGFLVRHMVKTNQPG-VG--YSADAANHIYHLINKG 483 (902)
Q Consensus 416 t~i~~l~~~g~---~~~A~~~~~~m~~~~------~i~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~li~~~~k~g 483 (902)
.++..|.+.+. ..++..+-..+.... ...+..+ . ...+..-.|. ++ .....+++..++.. |
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD-----N-CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh-----h-HHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 14445555555 333333311111000 0000000 0 0000011111 11 22223444444544 8
Q ss_pred ChHHHHHHHHHHHHccCCCCCccchHHHH--HHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCc
Q psy767 484 QIDAAYRIVNTLARSANINGEQLPVGGFL--VRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGA 561 (902)
Q Consensus 484 ~~~~A~~l~~~m~~~~~~~~~~~~~~n~l--i~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~ 561 (902)
+.++|...+......... .++.+ ...+...|+ .++|+..|+++... .|+...+..+..++ . ..|+
T Consensus 491 ~~~eAi~a~~~Al~~~Pd------~~~~L~lA~al~~~Gr-~eeAi~~~rka~~~--~p~~~a~~~la~al-l---~~Gd 557 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPD------AWQHRAVAYQAYQVED-YATALAAWQKISLH--DMSNEDLLAAANTA-Q---AAGN 557 (987)
T ss_pred CcHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHCCC-HHHHHHHHHHHhcc--CCCcHHHHHHHHHH-H---HCCC
Confidence 999999988777665321 23333 444468899 99999999997554 34444444444344 5 7888
Q ss_pred chhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHH--Hh---hhHHHHHHHHHHHHHHhCC
Q psy767 562 VETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLM--LS---FLDAEVLRILQVAEAEFGV 636 (902)
Q Consensus 562 ~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li--~~---~~~~~al~ll~~m~~~~g~ 636 (902)
.++ |.. +++...+.. |........+ .. +..++|+..+++. . .+
T Consensus 558 ~~e---------A~~----~l~qAL~l~----------------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L--~l 605 (987)
T PRK09782 558 GAA---------RDR----WLQQAEQRG----------------LGDNALYWWLHAQRYIPGQPELALNDLTRS-L--NI 605 (987)
T ss_pred HHH---------HHH----HHHHHHhcC----------------CccHHHHHHHHHHHHhCCCHHHHHHHHHHH-H--Hh
Confidence 888 777 776666543 1122222222 23 6699999999998 3 44
Q ss_pred CCChHHHHHhhhccCCCCCCChHHHHHHHHh-cCCCCcc--chHHHHHHHHHhcCHHHHHHHHHHhhh-hhchhhccchh
Q psy767 637 GSNTETLRDYVLPVLSPPNQVSGEVFSQLRS-VGVTIGS--ITSAYVVHMLRQHNLKEAALLAKSFRA-HYAKVVVRPVL 712 (902)
Q Consensus 637 ~P~~~t~~~lv~~~~~~~~~~~~~~~~~l~~-~g~~~~~--~~~~~l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l 712 (902)
.|+...|..+...+..... .+++...+++ ....|+. ....+-..+...|++++|++.+++... .++.......+
T Consensus 606 ~P~~~a~~~LA~~l~~lG~--~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 606 APSANAYVARATIYRQRHN--VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred CCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5677777777665555333 4445555553 3445555 444555556899999999999998765 35555667778
Q ss_pred hhhhhccCCchhHHHHHHHHH
Q psy767 713 AVSYLRTQDLPSLVTVVRAVC 733 (902)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~ 733 (902)
+.++...|+++..++.++...
T Consensus 684 A~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 889999999999999888876
|
|
| >KOG4422|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-13 Score=137.51 Aligned_cols=362 Identities=14% Similarity=0.106 Sum_probs=251.1
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.+..+|.+||.|+++.-..+.|.+++.+-.....+.+..+||.+ |.+-.-.. ..+++.+|....++||..
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~l------I~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGL------IGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhh------hhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 37789999999999999999999999999988888999999999 66544332 278999999999999999
Q ss_pred HHHHHHHHHHhCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH-HH----HHHHhcccCCCcc----
Q psy767 161 VFNALIYGHSQANDMAS----AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS-IK----TKIPSLKPQSELF---- 227 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~----A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~-a~----~l~~~~~~~~~~~---- 227 (902)
|+|+++++.++.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +. ++...+..+...|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998865 56788999999999999999999999999988754 33 3444444433332
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHH
Q psy767 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAG----LEPSA---QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYL 300 (902)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g----~~pd~---~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~ 300 (902)
+...+...+.++....+.+.|.++..-+.... +.|+. .-|.-+....|+....+.-+.+|+.|..+-..|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 34456667777778899999999887776532 23332 335667888899999999999999999998889888
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc
Q psy767 301 DIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD 380 (902)
Q Consensus 301 tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~ 380 (902)
+++..+.+..-.+.++.+..++. .+...|...+.....-++. ++-.-+..|..+.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~------------D~~~~ght~r~~l~eeil~-------------~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWK------------DSKEYGHTFRSDLREEILM-------------LLARDKLHPLTPE 489 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHH------------HHHHhhhhhhHHHHHHHHH-------------HHhcCCCCCCChH
Confidence 88888887777777766666553 3555554444333333332 2222333444343
Q ss_pred HHHHHHHHHHcC-Ch-HHHHHHHHHcccCCCCCCCHHHH-HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHh
Q psy767 381 YLDIIHALAVSG-HG-EYIDEIISKIQPGVGYSADAANH-IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 457 (902)
Q Consensus 381 ~~~li~~~~~~g-~~-~~A~~l~~~m~~~~g~~pd~~t~-i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~ 457 (902)
-..+-...+++- ++ +.....-.+|.. ..+.|...+. ...+.+.|+.++|.++|..+.+.+...|..|.. +
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~-~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l-n----- 562 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRA-QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL-N----- 562 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHh-ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch-h-----
Confidence 223333332221 12 222333345554 6677777764 344568999999999998887766555554422 0
Q ss_pred hhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHH
Q psy767 458 MVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLAR 497 (902)
Q Consensus 458 ~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~ 497 (902)
....+++.-.+......|...++-|..
T Consensus 563 -------------Am~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 563 -------------AMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred -------------hHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 112244444455566666666666644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-11 Score=145.79 Aligned_cols=402 Identities=11% Similarity=-0.046 Sum_probs=259.1
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+......|.+.|++++|+..|++..+ +.|+...|..+ ..+|.+.|++++|...++...+.+ +.+...|..+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~------a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~ 200 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNR------AACHNALGDWEKVVEDTTAALELD-PDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHH------HHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 44566778889999999999999885 46788888888 899999999999999999988765 5567789999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCC---------------------
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS--------------------- 224 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~--------------------- 224 (902)
-.+|...|++++|+.-|......+-..+.. ...++..+........+...++.-....
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 999999999999998887665442111111 1111111111000111111111110000
Q ss_pred ------Cccc-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 225 ------ELFL-CFSFQLTNLL---ILVSSDMASAEGILTMMSQAG-LEP-SAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 225 ------~~~~-~~~~~~~~~~---~~~~g~~~~A~~l~~~m~~~g-~~p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
..+. ...+..+... ....+++++|...|+.....+ ..| +...|+.+...+...|++++|+..|++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000 0000000000 012468889999999888765 233 456788888888899999999999998765
Q ss_pred CCCCC--CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 293 SLVNG--DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLL 369 (902)
Q Consensus 293 ~~~~p--~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~ 369 (902)
..... .+..+...+...++. +.+...+. .... ..| +..+|..+...|...|++++|...|
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~---~eA~~~~~------------~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDP---DKAEEDFD------------KALK--LNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCH---HHHHHHHH------------HHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43211 122333333333333 33332221 1111 233 5788999999999999999999999
Q ss_pred HH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q psy767 370 AQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGE 446 (902)
Q Consensus 370 ~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~ 446 (902)
++ +...|.... |..+...+.+.|++++|+..|++......-.|+.+. +-..+...|++++|...|+...... |.
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---p~ 499 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE---KE 499 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---Cc
Confidence 98 444444333 667888899999999999999998873222233333 3445668999999999999987642 11
Q ss_pred cccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHH
Q psy767 447 QLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDK 525 (902)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~ 525 (902)
..... ... ....+ ....+...|++++|.++++...... +.....+..+...+...|+ .++
T Consensus 500 ~~~~~--------------~~~-~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~---p~~~~a~~~la~~~~~~g~-~~e 560 (615)
T TIGR00990 500 TKPMY--------------MNV-LPLINKALALFQWKQDFIEAENLCEKALIID---PECDIAVATMAQLLLQQGD-VDE 560 (615)
T ss_pred ccccc--------------ccH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHccC-HHH
Confidence 10000 000 00111 2222445799999999999987653 2345578899999999999 999
Q ss_pred HHHHHHHHHHC
Q psy767 526 VLAVCHRLTDE 536 (902)
Q Consensus 526 A~~l~~~m~~~ 536 (902)
|+.+|++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999997654
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=141.75 Aligned_cols=426 Identities=13% Similarity=0.073 Sum_probs=302.9
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchH
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFS 101 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~ 101 (902)
+|.|.+|.+.+.......+.+.-....+-..+....+++....--..... ..+.-..+|..+...+-..|++++
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r------~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR------KNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh------ccchHHHHHHHHHHHHHHhchHHH
Confidence 47778888777666555544433333333444444333332221111111 123345678889999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHHhCCCHHHHH
Q psy767 102 PTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA-LIYGHSQANDMASAE 179 (902)
Q Consensus 102 A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~-Li~~~~~~g~~~~A~ 179 (902)
|+.+++.|.+. +| ....|..+ ..++...|+.+.|...|.+..+.+ |+.....+ +-..+-..|++++|.
T Consensus 135 al~~y~~aiel--~p~fida~inl------a~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 135 ALALYRAAIEL--KPKFIDAYINL------AAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHHHHHHhc--CchhhHHHhhH------HHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhH
Confidence 99999999975 34 56778888 899999999999999998877654 55544433 334444578999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q psy767 180 GILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA 258 (902)
Q Consensus 180 ~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~ 258 (902)
..|.+..+. .|. .+.|+.|-..+-..|++-.|++.|++....++... ..|.-+..++...+.++.|...|......
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-HHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 999888876 454 35788888889999999999999999888665543 35666777888889999999888877765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHH
Q psy767 259 GLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMS 338 (902)
Q Consensus 259 g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 338 (902)
. +-..+++..|...|...|.++-|+..|++...
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---------------------------------------------- 314 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---------------------------------------------- 314 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHh----------------------------------------------
Confidence 2 33466788888899999999999999987322
Q ss_pred hcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH
Q psy767 339 QAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415 (902)
Q Consensus 339 ~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 415 (902)
+.|+ ...|+.|..++-..|++.+|.+.+.+ +...+..++ .+.|...|...|..++|..+|....+ +.|+..
T Consensus 315 ---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~a 388 (966)
T KOG4626|consen 315 ---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFA 388 (966)
T ss_pred ---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhh
Confidence 3444 35788888888888888888888877 444444444 67788888888888888888888877 777654
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHH
Q psy767 416 ----NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRI 491 (902)
Q Consensus 416 ----t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l 491 (902)
++-..|-.+|++++|...+++..+ |.|+-.+ ...|+-..|-..|+.+.|.+.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAd---------------------a~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFAD---------------------ALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHH---------------------HHHhcchHHHHhhhHHHHHHH
Confidence 255566688888888888887765 3443211 123466668888999999888
Q ss_pred HHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh-hhHHHHH
Q psy767 492 VNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRA-FNLAVLI 549 (902)
Q Consensus 492 ~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll 549 (902)
+.....- +|.-..+.+.|...|-..|. ..+|+.-++.... ++||- ..|-.++
T Consensus 445 y~rAI~~---nPt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLk--lkPDfpdA~cNll 497 (966)
T KOG4626|consen 445 YTRAIQI---NPTFAEAHSNLASIYKDSGN-IPEAIQSYRTALK--LKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHhc---CcHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHc--cCCCCchhhhHHH
Confidence 8776653 33345677888888989998 9999999998655 56763 3344444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-12 Score=153.74 Aligned_cols=322 Identities=10% Similarity=-0.015 Sum_probs=203.6
Q ss_pred HHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHh
Q psy767 49 LNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISN 127 (902)
Q Consensus 49 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~ 127 (902)
++..+.+.|++++|..++..... ..+-+...+..++.++...|++++|...|+++... .| +...+..+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~------~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~l--- 116 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVL------TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLV--- 116 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHH------hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHH---
Confidence 34455566666666666666655 12223333444445555567777777777776653 23 33445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
...+...|++++|...++...... +.+...|..+...+...|++++|...++.+...... +...+.. +..+...
T Consensus 117 ---a~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~ 190 (656)
T PRK15174 117 ---ASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNK 190 (656)
T ss_pred ---HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHc
Confidence 666666677777777776666543 344556666666677777777777777666554221 1222222 2335666
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----H
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS----V 283 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~----A 283 (902)
|++++|...++.+..................+...|++++|...++...... +.+...+..+...|.+.|++++ |
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 7777777666665554333333333333445555666777776666666543 3445556666666666666664 5
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCH
Q psy767 284 RRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDM 362 (902)
Q Consensus 284 ~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~ 362 (902)
...|++. .. +.| +..++..+...+.+.|++
T Consensus 270 ~~~~~~A-----------------------------------------------l~--l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 270 AEHWRHA-----------------------------------------------LQ--FNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHHHH-----------------------------------------------Hh--hCCCCHHHHHHHHHHHHHCCCH
Confidence 5555542 11 233 567889999999999999
Q ss_pred HHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHH
Q psy767 363 DSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 363 ~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~ 436 (902)
++|...+++ +...|..+. +..+..++...|++++|.+.|+++.. ..|+... ....+...|+.++|...|+.
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998 444555544 66788899999999999999999987 4565433 23456799999999999999
Q ss_pred HHhc
Q psy767 437 LARS 440 (902)
Q Consensus 437 m~~~ 440 (902)
..+.
T Consensus 378 al~~ 381 (656)
T PRK15174 378 YIQA 381 (656)
T ss_pred HHHh
Confidence 8775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-12 Score=148.56 Aligned_cols=352 Identities=10% Similarity=-0.046 Sum_probs=261.5
Q ss_pred CCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHc
Q psy767 58 SLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQD 137 (902)
Q Consensus 58 ~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~ 137 (902)
+++.--..|...++...++.|-..+. -.++..+.+.|++.+|+.+++........+ ...+..+ ..++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l------~~~~l~~ 89 (656)
T PRK15174 20 DWEGLCLYFSQHPEKVRDSAGNEQNI---ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRW------VISPLAS 89 (656)
T ss_pred chhhHhHHhhcccHhhhhhcccccCH---HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHH------hhhHhhc
Confidence 33333334444444444444433333 356778889999999999999998765443 3334445 5666779
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHH
Q psy767 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTK 216 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l 216 (902)
|+++.|...|+.+.... |.+...|..+...+.+.|++++|...|++..+. .|+ ...+..+...+...|+.++|...
T Consensus 90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999998875 566788999999999999999999999999886 444 56788899999999999999999
Q ss_pred HHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCC
Q psy767 217 IPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVN 296 (902)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~ 296 (902)
++.+...........+. . ..+...|++++|..+++.+....-.++...+..+..++.+.|++++|+..|++....
T Consensus 167 ~~~~~~~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--- 241 (656)
T PRK15174 167 ARTQAQEVPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--- 241 (656)
T ss_pred HHHHHHhCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 99876654433332222 2 346778999999999999887654455566666778899999999999999973221
Q ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHH-
Q psy767 297 GDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS----IRRLLAQ- 371 (902)
Q Consensus 297 p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~----A~~~~~~- 371 (902)
.+.+...+..+..+|...|++++ |...|++
T Consensus 242 ---------------------------------------------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 242 ---------------------------------------------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 12256777888999999999986 7888887
Q ss_pred cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q psy767 372 NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGE 446 (902)
Q Consensus 372 m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~ 446 (902)
+...|..+. +..+...+...|++++|...+++... ..|+... +...+...|++++|...++.+.... |.
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~ 350 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GV 350 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cc
Confidence 444444443 78899999999999999999999987 5666543 3455679999999999999887752 22
Q ss_pred cccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 447 QLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
.+. ........+...|+.++|...|+......
T Consensus 351 ~~~---------------------~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSK---------------------WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chH---------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 110 11223445889999999999999987763
|
|
| >KOG4422|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-11 Score=127.59 Aligned_cols=304 Identities=13% Similarity=0.168 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHH-HHHHHHhhhCC-------
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGA-TKILEFMRDKT------- 154 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A-~~l~~~m~~~~------- 154 (902)
+.+=|.|+.. ...|.+..+.-+|+.|...|+..+...-..|++ +-.|-...++--| ++-|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~----LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFR----LVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHH----HHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence 3455666665 456889999999999999998777766666633 1111111111111 11111221111
Q ss_pred ------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 155 ------------FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 155 ------------~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
.|-+..+|.+||.|+|+.-..+.|.++|++-.....+.+..+||.+|.+-.-..+ .+++.+|..
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS 266 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH
Confidence 2335589999999999999999999999999888788899999999887654433 455555555
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHhccCCCCC
Q psy767 223 QSELFLCFSFQLTNLLILVSSDMAS----AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS-VRRLLAQSGSSLVNG 297 (902)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~-A~~lf~~m~~~~~~p 297 (902)
....|+..+++.+.....+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ |..+..++.+
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N----- 341 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN----- 341 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH-----
Confidence 5555555555555555555554432 34455556666666666666666666655555433 2222222211
Q ss_pred CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcC---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy767 298 DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG---LEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQNG 373 (902)
Q Consensus 298 ~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g---~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m~ 373 (902)
.+.... +.| |...|..-++.|.+..+.+-|.++-.-.+
T Consensus 342 --------------------------------------~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 342 --------------------------------------SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred --------------------------------------hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111222 222 44556666677777777777776654321
Q ss_pred CC------C--Cccc--HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHh
Q psy767 374 SS------L--VNGD--YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 374 ~~------~--~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~ 439 (902)
.. | ...+ |..+....|+....+..+..|+.|.. .-+-|+..+ ++.++...|.++-.-+++..+..
T Consensus 384 tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 384 TGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred cCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 11 0 1111 45677888888889999999999988 667787776 35566677888877777777654
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-12 Score=135.26 Aligned_cols=411 Identities=12% Similarity=0.100 Sum_probs=269.5
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q psy767 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALI 166 (902)
Q Consensus 87 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li 166 (902)
..|.+-.-+.|++.+|++.....-.... -+....-.+ -..+.+..+++....--....+ ..+.-..+|..+.
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll------~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLL------SAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeee------hhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHH
Confidence 3455555667777777766554433221 111111112 2334444444443332222222 2234456777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 167 YGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
+.+-..|++.+|+.+|+.|.+. .| ....|..+..++...|+.+.|.+.|-...+.++..- ...+.+..++...|++
T Consensus 124 N~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~-ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY-CARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh-hhhcchhHHHHhhccc
Confidence 7777777777777777777765 34 344677777777777777777776666655433211 1222233444456777
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhccC--CCCCCHHHHHHHHHHcCCcccHHHHHHHH
Q psy767 246 ASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLLAQSGSS--LVNGDYLDIIHALAVSGHGEYIDEVSAIV 322 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd-~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~--~~~p~~~tl~~~l~~~~~~~~~~~~~~l~ 322 (902)
++|...|.+..+. .|. .+.|+.|-..+-..|+...|+.-|++...- ...+.|..+-..+...+..+.+-...
T Consensus 201 ~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y--- 275 (966)
T KOG4626|consen 201 EEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY--- 275 (966)
T ss_pred chhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH---
Confidence 7777766666554 333 456777777777777777777777775432 22333555555555555444333221
Q ss_pred HHhhhhhcccccchHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDE 399 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~ 399 (902)
.......|+ ..+|..|...|...|.+|-|++.+++ +...|.-+. |+.|..++...|+..+|..
T Consensus 276 --------------~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 276 --------------LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred --------------HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH
Confidence 334455675 57788888899999999999999998 666666665 9999999999999999999
Q ss_pred HHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHH
Q psy767 400 IISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANH 475 (902)
Q Consensus 400 l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 475 (902)
.|.+... +.|+... +-..+...|++++|..+|.....-+ |. ....+.|+
T Consensus 342 cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---p~---------------------~aaa~nNL 394 (966)
T KOG4626|consen 342 CYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---PE---------------------FAAAHNNL 394 (966)
T ss_pred HHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---hh---------------------hhhhhhhH
Confidence 9999988 5565543 5566679999999999998877642 11 11134567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcc
Q psy767 476 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR-AFNLAVLIKAHVL 554 (902)
Q Consensus 476 i~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~ 554 (902)
-..|-.+|++++|..-+++.... .|.-...|+.+...|-..|+ .+.|++.+.+... +.|. +..++.|.+.+ -
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI---~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~--~nPt~AeAhsNLasi~-k 467 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI---KPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQ--INPTFAEAHSNLASIY-K 467 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc---CchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHh--cCcHHHHHHhhHHHHh-h
Confidence 77799999999999999988775 33345789999999999999 9999999998766 3554 45667777666 4
Q ss_pred cccccCcchh
Q psy767 555 KEDYTGAVET 564 (902)
Q Consensus 555 ~~~~~g~~~~ 564 (902)
..|++.+
T Consensus 468 ---DsGni~~ 474 (966)
T KOG4626|consen 468 ---DSGNIPE 474 (966)
T ss_pred ---ccCCcHH
Confidence 7889998
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-10 Score=136.27 Aligned_cols=377 Identities=12% Similarity=0.028 Sum_probs=228.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~ 209 (902)
-..+.+.|+++.|...|+..... .|+...|..+..+|.+.|++++|++.++...+. .| +...|..+..+|...|+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence 67788999999999999998764 578889999999999999999999999999886 45 45688889999999999
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------------------
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAG------------------------------ 259 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g------------------------------ 259 (902)
+++|..-|......+..........+...+.. .+........+..
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 99999877655433222221111111111110 1111111111100
Q ss_pred -CCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHhccCC-CCCCHHHHHHHHHHc-CCcccHHHHHHHHHHhhhhhccc
Q psy767 260 -LEPSA-QTYTKLMCG---YAKHGDMDSVRRLLAQSGSSL-VNGDYLDIIHALAVS-GHGEYIDEVSAIVCFVNICFHWL 332 (902)
Q Consensus 260 -~~pd~-~ty~~LI~a---~~~~g~~~~A~~lf~~m~~~~-~~p~~~tl~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~ 332 (902)
..+.. ..+..+... ....+++++|.+.|++....+ ..|........+..+ ...+..+.+...+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~--------- 355 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS--------- 355 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 00000 000000000 123468999999999987654 234322211111111 11222333322211
Q ss_pred ccchHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCC
Q psy767 333 EGPMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVG 409 (902)
Q Consensus 333 ~~~~m~~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g 409 (902)
....+.|+ ...|..+...|...|++++|...|++ +...|..+. |..+...+...|++++|.+.|++...
T Consensus 356 -----kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--- 427 (615)
T TIGR00990 356 -----KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--- 427 (615)
T ss_pred -----HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 11223454 55778888888888999999888887 344444443 77788888888999999999988877
Q ss_pred CCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCCh
Q psy767 410 YSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQI 485 (902)
Q Consensus 410 ~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~ 485 (902)
..|+... +...+.+.|++++|...|+...+.+ |..+. ....+...+...|++
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~---------------------~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPD---------------------VYNYYGELLLDQNKF 483 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChH---------------------HHHHHHHHHHHccCH
Confidence 6676543 2334558888999998888877643 22110 122345557788889
Q ss_pred HHHHHHHHHHHHccCCCC-Cccc---hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccccccC
Q psy767 486 DAAYRIVNTLARSANING-EQLP---VGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRA-FNLAVLIKAHVLKEDYTG 560 (902)
Q Consensus 486 ~~A~~l~~~m~~~~~~~~-~~~~---~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~~~~~g 560 (902)
++|.+.|+.......... .... .++.....+...|+ +++|+.++++.... .|+. ..+..+...+ . ..|
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~-~~eA~~~~~kAl~l--~p~~~~a~~~la~~~-~---~~g 556 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD-FIEAENLCEKALII--DPECDIAVATMAQLL-L---QQG 556 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-H---Hcc
Confidence 999888888776532211 0111 12222223334577 88898888887664 3443 3466666666 5 788
Q ss_pred cchh
Q psy767 561 AVET 564 (902)
Q Consensus 561 ~~~~ 564 (902)
+.++
T Consensus 557 ~~~e 560 (615)
T TIGR00990 557 DVDE 560 (615)
T ss_pred CHHH
Confidence 8888
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-10 Score=138.02 Aligned_cols=209 Identities=11% Similarity=-0.059 Sum_probs=137.7
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchH
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFS 101 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~ 101 (902)
.|++++|...+..+....+.+..++..+...|...|+.++|+..+++... ..|+...|..++..+ +++.+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~-------ldP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK-------RHPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCcccHHHHHHHHHh---ccChh
Confidence 48899999999988888888899999999999999999999999999987 456555555555444 88999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHH--------HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhC
Q psy767 102 PTDFLAKLESQGIEPNRVTYQQLISNSKLISK--------YCQDGNIEGATKILEFMRDKTFPISEGVFNAL-IYGHSQA 172 (902)
Q Consensus 102 A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~--------~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L-i~~~~~~ 172 (902)
|..+++++...... +..++..+ ... |.+. +.|.+.++ .......|+..+.... .+.|.+.
T Consensus 127 A~~~ye~l~~~~P~-n~~~~~~l------a~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 127 SVTTVEELLAQQKA-CDAVPTLR------CRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHH------HHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 99999999976432 33344333 332 4443 55555554 3222223334444444 7778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK-HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~-~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
|++++|++++.++.+.+.. +..-...|-.+|.. .++ +++..++.. ....+......+...+...|+.+.|..+
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888777532 33334455556665 355 555555332 1123445555666666667777777777
Q ss_pred HHHHHH
Q psy767 252 LTMMSQ 257 (902)
Q Consensus 252 ~~~m~~ 257 (902)
+.++..
T Consensus 270 L~~~~~ 275 (987)
T PRK09782 270 LIENKP 275 (987)
T ss_pred HHhCcc
Confidence 766654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-10 Score=139.19 Aligned_cols=401 Identities=11% Similarity=-0.019 Sum_probs=261.7
Q ss_pred CCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHH
Q psy767 55 SEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY 134 (902)
Q Consensus 55 ~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~ 134 (902)
..|+.++|..++..... .-+.+...+..+...+...|++++|..+|++..+.. +.+...+..+ ...+
T Consensus 27 ~~g~~~~A~~~~~~~~~------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l------a~~l 93 (765)
T PRK10049 27 WAGQDAEVITVYNRYRV------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL------ILTL 93 (765)
T ss_pred HcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH------HHHH
Confidence 35666667666665553 123445568888888888888888888888877542 2234455556 7778
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSI 213 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a 213 (902)
...|++++|...++...+.. +.+.. |..+..++...|+.++|+..|+++.+. .| +...+..+..++...+..+.|
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 88888888888888887763 45556 888888888888888888888888876 34 344556667777788888888
Q ss_pred HHHHHhcccCCCccc---hhhHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHH
Q psy767 214 KTKIPSLKPQSELFL---CFSFQLTNLLILV-----SSDM---ASAEGILTMMSQA-GLEPSAQ-TY----TKLMCGYAK 276 (902)
Q Consensus 214 ~~l~~~~~~~~~~~~---~~~~~~~~~~~~~-----~g~~---~~A~~l~~~m~~~-g~~pd~~-ty----~~LI~a~~~ 276 (902)
.+.++.......... .........+... .+++ +.|...++.+.+. .-.|+.. .+ ...+.++..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 888877665211000 0011111111111 1223 6677777777753 2223221 11 111345567
Q ss_pred cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGY 356 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y 356 (902)
.|++++|...|+++...+. ..|+. .-..+..+|
T Consensus 250 ~g~~~eA~~~~~~ll~~~~----------------------------------------------~~P~~-a~~~la~~y 282 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQ----------------------------------------------IIPPW-AQRWVASAY 282 (765)
T ss_pred hhhHHHHHHHHHHhhccCC----------------------------------------------CCCHH-HHHHHHHHH
Confidence 7888888888887433211 11322 112246689
Q ss_pred HHcCCHHHHHHHHHHcC-CCCCc-----ccHHHHHHHHHHcCChHHHHHHHHHcccCCC----------CCCCHH-----
Q psy767 357 AKHGDMDSIRRLLAQNG-SSLVN-----GDYLDIIHALAVSGHGEYIDEIISKIQPGVG----------YSADAA----- 415 (902)
Q Consensus 357 ~~~g~~~~A~~~~~~m~-~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g----------~~pd~~----- 415 (902)
...|++++|..+|++.. ..+.. ..+..+..++...|++++|.++++.+..... -.|+..
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999853 23222 1245567788999999999999999876321 123321
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHH
Q psy767 416 -NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNT 494 (902)
Q Consensus 416 -t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~ 494 (902)
.....+...|+.++|.++++++.... |..+. ..+.+...+...|+.++|++.++.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~~---------------------l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA---PGNQG---------------------LRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---------------------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 12445668999999999999988752 22211 234456668899999999999999
Q ss_pred HHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q psy767 495 LARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLI 549 (902)
Q Consensus 495 m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 549 (902)
..... |.++..+-.....+...|+ +++|+.+++++.+. .|+......+-
T Consensus 419 al~l~---Pd~~~l~~~~a~~al~~~~-~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 419 AEVLE---PRNINLEVEQAWTALDLQE-WRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHhhC---CCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88864 3345566677778888999 99999999998874 56665554444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-10 Score=135.39 Aligned_cols=156 Identities=9% Similarity=-0.001 Sum_probs=129.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~ 209 (902)
+......|+.++|+++|....... +.+...+..+...+.+.|++++|..+|++..+. .| +...+..+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 667788999999999999987633 556677999999999999999999999998876 34 45677788889999999
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.++|...++......+.... +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..++|++.++.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN--LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999999876444333 7777778888999999999999999874 44566667788888899999999999986
Q ss_pred hcc
Q psy767 290 SGS 292 (902)
Q Consensus 290 m~~ 292 (902)
...
T Consensus 176 ~~~ 178 (765)
T PRK10049 176 ANL 178 (765)
T ss_pred CCC
Confidence 543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-09 Score=124.29 Aligned_cols=433 Identities=12% Similarity=0.082 Sum_probs=293.0
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR--VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
|...|. ..+.|++..|+..|++..+. .|+. ..+ .+ +..+...|+.++|+.+++...... +.......
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dl------l~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DW------LQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HH------HHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 444443 46789999999999999865 4553 234 66 888889999999999999987322 22334444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcC
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS 243 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 243 (902)
++...|...|++++|+++|+++.+.... +...+..++..+...++.++|.+.++.+...... ...+..+..++...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcc
Confidence 4466888999999999999999988422 4567778889999999999999999999887655 333344444444467
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHH----HHHHHHcC---Cc----
Q psy767 244 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI----IHALAVSG---HG---- 312 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl----~~~l~~~~---~~---- 312 (902)
+..+|...++++.+.. +-+...+..+..+..+.|-...|+++..+-..--...+...+ +.-..+.+ ..
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 7767999999999885 556778899999999999999999888874322222221111 11111111 10
Q ss_pred --ccHHHHHHHHHHhhhhhcccccchHHhcCCCCCH-HH----HHHHHHHHHHcCCHHHHHHHHHHcCCCCC-cccHH--
Q psy767 313 --EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSA-QT----YTKLMCGYAKHGDMDSIRRLLAQNGSSLV-NGDYL-- 382 (902)
Q Consensus 313 --~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~-~t----~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~-- 382 (902)
..++.+..-.. ..+...+-.|.. .. .--.+-++...|++.++++.|+.+...+. .|.|.
T Consensus 263 r~~~~d~ala~~~-----------~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 263 RFDIADKALADYQ-----------NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hHHHHHHHHHHHH-----------HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 11222221111 012223333432 22 22345678899999999999999987774 47775
Q ss_pred HHHHHHHHcCChHHHHHHHHHcccCCC---CCCCHH----HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc-chhhH
Q psy767 383 DIIHALAVSGHGEYIDEIISKIQPGVG---YSADAA----NHIYHLINKGQIDAAYRIVNTLARSANINGEQLP-VGGFL 454 (902)
Q Consensus 383 ~li~~~~~~g~~~~A~~l~~~m~~~~g---~~pd~~----t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~-~~~~~ 454 (902)
.+.++|...+++++|..+|+.+....+ ..|+.. .+..++...+++++|..+++.+.+. .|.... .+
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~---~p~~~~~~~--- 405 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ---TPYQVGVYG--- 405 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCcEEeccC---
Confidence 699999999999999999999865332 122222 3678888999999999999999874 111000 00
Q ss_pred HHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 455 VRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.....|+..+.-.....+..+...|++.+|++.++.+.... |.+......+...+...|. +.+|.+.++...
T Consensus 406 ----~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~ 477 (822)
T PRK14574 406 ----LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNLRIALASIYLARDL-PRKAEQELKAVE 477 (822)
T ss_pred ----CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 00012222222111224455889999999999999997763 2345678889999999999 999999997665
Q ss_pred HCCCCCChh-hHHHHHHHhcccccccCcchh
Q psy767 535 DENLHPRAF-NLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 535 ~~g~~Pd~~-t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.. .|+.. +......++ . ..|++.+
T Consensus 478 ~l--~P~~~~~~~~~~~~a-l---~l~e~~~ 502 (822)
T PRK14574 478 SL--APRSLILERAQAETA-M---ALQEWHQ 502 (822)
T ss_pred hh--CCccHHHHHHHHHHH-H---hhhhHHH
Confidence 54 67643 334444444 4 6677777
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-08 Score=121.24 Aligned_cols=178 Identities=10% Similarity=0.028 Sum_probs=103.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CC----Cccc---HHHHHHHHHHcCChHHHHHHHHHcccCC
Q psy767 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS-SL----VNGD---YLDIIHALAVSGHGEYIDEIISKIQPGV 408 (902)
Q Consensus 337 m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~-~~----~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~ 408 (902)
+...|......+-.++.++|...++.++|..+|+..-. .+ ..++ ...|..+|..++++++|..+++.+.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 44444444445666677777777777777777776421 11 1111 3556777777777777777777776521
Q ss_pred C------------CCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccch
Q psy767 409 G------------YSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADA 472 (902)
Q Consensus 409 g------------~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 472 (902)
. ..||-.. .+..+...|+..+|++.++.+.....-++. ..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~------------------------l~ 453 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN------------------------LR 453 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------------HH
Confidence 1 1111111 244456777788888877777654211111 01
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhh
Q psy767 473 ANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFN 544 (902)
Q Consensus 473 ~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t 544 (902)
...-..+...|...+|+..++..... .|.+..+.-.....+...++ +++|..+.+.+.+. .|+...
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l---~P~~~~~~~~~~~~al~l~e-~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL---APRSLILERAQAETAMALQE-WHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh---CCccHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhh--CCCchh
Confidence 12333366777888888887665554 22344455566666667777 78887777776654 455443
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-07 Score=108.65 Aligned_cols=553 Identities=13% Similarity=0.071 Sum_probs=307.7
Q ss_pred CCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHH--CCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHhHHHHHHH
Q psy767 59 LGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLD--NEHTFSPTDFLAKLESQ--GIEPNRVTYQQLISNSKLISKY 134 (902)
Q Consensus 59 ~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~--~g~~~~A~~l~~~M~~~--g~~pd~~t~~~ll~~~~li~~~ 134 (902)
++.|...|..... .-++|+.. .+.+++.. .+++..|+.+|...... ...||..+- + -..+
T Consensus 146 ~~~A~a~F~~Vl~------~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--i------g~Cf 209 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK------QSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--I------GHCF 209 (1018)
T ss_pred HHHHHHHHHHHHh------hCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--h------hhHH
Confidence 4677777777765 23334433 44555443 56788888888886543 345565432 1 2344
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA---NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~---g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
.+.|+.+.|...|+...+.+ |-++.++-.|--.-... ..+..++.++...-... .-|++..+.|.+-|.-.|++.
T Consensus 210 ~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH
Confidence 67888888888888877765 22233332222221222 23455666655554432 236667777788888888888
Q ss_pred HHHHHHHhcccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 212 SIKTKIPSLKPQSEL--FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
.+..+...+...... .-...|.-+...+-..|+++.|...|.+..... +| +..+-.|...|.+.|+++.+...|
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHH
Confidence 888877777654422 223345566666777888888888887776653 33 334455778888888888888888
Q ss_pred HHhccCCC-CCCHHHHHHHH-HHc-CCcccHHHHHHHHHHhhhhhcccccchHHhcCC---CCCHHHHHHHHHHHHHcCC
Q psy767 288 AQSGSSLV-NGDYLDIIHAL-AVS-GHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL---EPSAQTYTKLMCGYAKHGD 361 (902)
Q Consensus 288 ~~m~~~~~-~p~~~tl~~~l-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~---~p~~~t~~~Li~~y~~~g~ 361 (902)
+....... .+.-..++..+ ... ......+.+..+. .... +.|...|-.+-..|....-
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l----------------~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL----------------GKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH----------------HHHHhcccccHHHHHHHHHHHHhcCh
Confidence 87654321 11111122222 222 1222333333322 2222 3355666666666554443
Q ss_pred H------HHHHHHHHHcCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccC--CCCCCCH-----HH--H--HHHHHH
Q psy767 362 M------DSIRRLLAQNGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPG--VGYSADA-----AN--H--IYHLIN 423 (902)
Q Consensus 362 ~------~~A~~~~~~m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~--~g~~pd~-----~t--~--i~~l~~ 423 (902)
+ ..|..++...... .++- .|.+.......|.+++|.+.|+..... ...++|. .| + -..+-.
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 3 3344444443333 3333 577777778888888888888776542 0123333 22 2 222236
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH-HHHHHHHhcCChHHHHHHHHHHHHccCCC
Q psy767 424 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA-NHIYHLINKGQIDAAYRIVNTLARSANIN 502 (902)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~li~~~~k~g~~~~A~~l~~~m~~~~~~~ 502 (902)
.++.+.|.+.++.+.+.+ +||. +.| .+.-+.-..+...+|...++.....+..
T Consensus 509 l~~~~~A~e~Yk~Ilkeh------------------------p~YI-d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~- 562 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEH------------------------PGYI-DAYLRLGCMARDKNNLYEASLLLKDALNIDSS- 562 (1018)
T ss_pred hhhhhHHHHHHHHHHHHC------------------------chhH-HHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-
Confidence 678888888888888752 1121 111 1111122335677888888877765433
Q ss_pred CCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHH
Q psy767 503 GEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE-NLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGEL 581 (902)
Q Consensus 503 ~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~l 581 (902)
++..+..+...+.+... +..|.+-|+...+. -..+|+.+...|-.. .
T Consensus 563 --np~arsl~G~~~l~k~~-~~~a~k~f~~i~~~~~~~~D~YsliaLGN~-----------------------------~ 610 (1018)
T KOG2002|consen 563 --NPNARSLLGNLHLKKSE-WKPAKKKFETILKKTSTKTDAYSLIALGNV-----------------------------Y 610 (1018)
T ss_pred --CcHHHHHHHHHHHhhhh-hcccccHHHHHHhhhccCCchhHHHHhhHH-----------------------------H
Confidence 34566666656666555 66676655554332 122344333333321 2
Q ss_pred HHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhhHHHHHHHHHHHHHHhCCCCC----hHHHHHhhhccCCCCCCC
Q psy767 582 LKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQVAEAEFGVGSN----TETLRDYVLPVLSPPNQV 657 (902)
Q Consensus 582 l~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~~~~al~ll~~m~~~~g~~P~----~~t~~~lv~~~~~~~~~~ 657 (902)
++.+... .+. + .-..+..++|+.++.+.. ...|- .... ..|.+.......
T Consensus 611 ~~~l~~~---------------~rn-~-----ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGI-giVLA~kg~~~~- 664 (1018)
T KOG2002|consen 611 IQALHNP---------------SRN-P-----EKEKKHQEKALQLYGKVL---RNDPKNMYAANGI-GIVLAEKGRFSE- 664 (1018)
T ss_pred HHHhccc---------------ccC-h-----HHHHHHHHHHHHHHHHHH---hcCcchhhhccch-hhhhhhccCchH-
Confidence 2222211 110 0 112334777777777762 22322 1111 223333333333
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhh-hh--chhhccchhhhhhhccCCchhHHH-HHHHH
Q psy767 658 SGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRA-HY--AKVVVRPVLAVSYLRTQDLPSLVT-VVRAV 732 (902)
Q Consensus 658 ~~~~~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 732 (902)
...+|.+.++.......++.++...++..|++-.|+++.+.-.. ++ +...+..+|+.++-+.+.|....+ ++.++
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34488888888877777788888888888999999998887554 33 344566677777777777666544 44444
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-07 Score=108.89 Aligned_cols=443 Identities=14% Similarity=0.072 Sum_probs=270.2
Q ss_pred CCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCC--CCHHHHHHHHHhHHHHHHHH
Q psy767 58 SLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIE--PNRVTYQQLISNSKLISKYC 135 (902)
Q Consensus 58 ~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~ll~~~~li~~~~ 135 (902)
.+..|..++..... ..+ -+++.-|.|-+.|.-.|++..++.+...+...... --+.+|-.+ -.+|-
T Consensus 251 s~~~~~~ll~~ay~----~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~------gRs~H 318 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYK----ENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL------GRSYH 318 (1018)
T ss_pred HHHHHHHHHHHHHh----hcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH------HHHHH
Confidence 34444444444444 122 25566778888899999999999999988775411 123346667 88999
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC----
Q psy767 136 QDGNIEGATKILEFMRDKTFPISE--GVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHG---- 208 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~--~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g---- 208 (902)
..|+++.|...|-+-.+.+ |+. ..+--|...|.+.|+++.+...|+...+. .|| ..|...|-..|+..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhH
Confidence 9999999999987765543 333 34456778999999999999999998886 454 456666766777665
Q ss_pred ChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 209 DMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILT----MMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 209 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~----~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
..+.|..++....... +.+...|..+..++... +...++.+|. .|...+..+.....|.+-..+...|++.+|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 4566777776666544 33444555555555443 3333355544 4456677788899999999999999999999
Q ss_pred HHHHHhccC---CCCCCH-----HHHHHHHHHcCCc-ccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHHHHH
Q psy767 285 RLLAQSGSS---LVNGDY-----LDIIHALAVSGHG-EYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTKLMC 354 (902)
Q Consensus 285 ~lf~~m~~~---~~~p~~-----~tl~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~Li~ 354 (902)
..|.+.... ...++. .|+---++++... ...+.+..++.- +. .-.|+ +..|--+..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~------------Il--kehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS------------IL--KEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH------------HH--HHCchhHHHHHHhhH
Confidence 999886543 112222 2222222222111 112222222110 11 11233 334444544
Q ss_pred HHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHH---HHH-------
Q psy767 355 GYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIY---HLI------- 422 (902)
Q Consensus 355 ~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~---~l~------- 422 (902)
+....+...+|...++. +......|+ |+-+...+.+...+..|.+-|..........+|.+++|. .+.
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 44555777778877777 344444444 555555777777777777766655543444477776421 111
Q ss_pred -----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHH
Q psy767 423 -----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLAR 497 (902)
Q Consensus 423 -----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~ 497 (902)
..+..++|+++|.+..+.. |.+.. ....+-..++.+|++.+|..+|....+
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d---pkN~y---------------------AANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND---PKNMY---------------------AANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC---cchhh---------------------hccchhhhhhhccCchHHHHHHHHHHH
Confidence 3345677777777766642 22110 011244457778888888888888777
Q ss_pred ccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 498 SANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHR-LTDENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 498 ~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~-m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.... ...+|-.+.+.|+..|. +..|+++|+. |....-.-+......|.+++ . +.|.+.+
T Consensus 675 a~~~---~~dv~lNlah~~~e~~q-y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~-y---~~~~~~e 734 (1018)
T KOG2002|consen 675 ATSD---FEDVWLNLAHCYVEQGQ-YRLAIQMYENCLKKFYKKNRSEVLHYLARAW-Y---EAGKLQE 734 (1018)
T ss_pred HHhh---CCceeeeHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-H---HhhhHHH
Confidence 6431 22456667777888888 8888888887 45555455566667777776 5 5666655
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-11 Score=92.21 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
||+++||+||++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-05 Score=92.77 Aligned_cols=335 Identities=14% Similarity=0.090 Sum_probs=240.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
+.|.+..--.........|+.++|.+++.+..+.... +...|.+| -..|-..|+.+++...+-.....+ |-|
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL------~~IyEqrGd~eK~l~~~llAAHL~-p~d 206 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTL------GEIYEQRGDIEKALNFWLLAAHLN-PKD 206 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHH------HHHHHHcccHHHHHHHHHHHHhcC-CCC
Confidence 4444544444444444459999999999999986433 56678888 999999999999998776554443 667
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH--
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN-- 236 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~-- 236 (902)
...|-.+-....+.|.++.|.-.|.+..+.. .++...+--=...|-+.|+...|...|.++....+..+..-+...+
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 7999999999999999999999999999874 2343444455677889999999999999998876644443333332
Q ss_pred --HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC---------------
Q psy767 237 --LLILVSSDMASAEGILTMMSQ-AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD--------------- 298 (902)
Q Consensus 237 --~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~--------------- 298 (902)
..+...++.+.|.+.+..... .+-..+...++.++..|.+...++.|......+......++
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 233335666888888887765 23356677888999999999999999998888766222221
Q ss_pred ------------HHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC--CHHHHHHHHHHHHHcCCHHH
Q psy767 299 ------------YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP--SAQTYTKLMCGYAKHGDMDS 364 (902)
Q Consensus 299 ------------~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p--~~~t~~~Li~~y~~~g~~~~ 364 (902)
... +....-.-+.+..+....+..+ .....+.| +...|.-+.++|...|++.+
T Consensus 366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~------------l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHF------------LVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHH------------HHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 111 1111111222222222222222 33444333 56788999999999999999
Q ss_pred HHHHHHHcCCCCCccc---HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHH
Q psy767 365 IRRLLAQNGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTL 437 (902)
Q Consensus 365 A~~~~~~m~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m 437 (902)
|+.+|..+...+...+ |--+...|...|.++.|.+.|++... ..|+... +-..+-+.|+.++|.+.+..+
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9999999766555444 88899999999999999999999988 7777653 555667999999999999886
Q ss_pred H
Q psy767 438 A 438 (902)
Q Consensus 438 ~ 438 (902)
.
T Consensus 510 ~ 510 (895)
T KOG2076|consen 510 I 510 (895)
T ss_pred c
Confidence 5
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-08 Score=110.95 Aligned_cols=288 Identities=10% Similarity=0.011 Sum_probs=186.4
Q ss_pred HHHHHHHHHH--CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 86 YNALLRVYLD--NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 86 yn~li~~~~~--~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
+..+..|... .|+++.|.+.+....+..-.| ...|-.. ..+..+.|+++.|...|..+.+. .|+...+-
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~lla------A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~ 155 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLA------AEAAQQRGDEARANQHLERAAEL--ADNDQLPV 155 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHH------HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHH
Confidence 3344444332 589999998887765542222 2223222 44447889999999999998764 45543332
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchh-------hHHH
Q psy767 164 --ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCF-------SFQL 234 (902)
Q Consensus 164 --~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~-------~~~~ 234 (902)
.....+...|+++.|...++++.+.. +-+...+..+...|.+.|+|++|.+++..+.+........ .+..
T Consensus 156 ~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 156 EITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 33567888899999999999998875 2255677888889999999999999999988876654331 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCccc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~ 314 (902)
+........+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+.
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--------------------- 292 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--------------------- 292 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 233333345566677777766543 2567888899999999999999999999874332
Q ss_pred HHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcC
Q psy767 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSG 392 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g 392 (902)
.|+... .++.+....++.+++.+..+. .+..|..+. +.++...|...+
T Consensus 293 ----------------------------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 293 ----------------------------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred ----------------------------CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 222211 122233344666666666665 344455554 556667777777
Q ss_pred ChHHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHH
Q psy767 393 HGEYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLA 438 (902)
Q Consensus 393 ~~~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~ 438 (902)
++++|.+.|+...+ ..|+..+ +...+.+.|+.++|..++++-.
T Consensus 343 ~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 343 EWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777766 5566554 2344557777777777776553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=88.56 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ 136 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~ 136 (902)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+++ |++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l------i~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL------INGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH------HHHHcC
Confidence 89999999999999999999999999999999999999999999 999875
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-05 Score=92.27 Aligned_cols=327 Identities=12% Similarity=0.053 Sum_probs=216.9
Q ss_pred hcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHH
Q psy767 51 SKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSK 129 (902)
Q Consensus 51 ~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~ 129 (902)
..+++ |++++|.+++.+... -.+.....|-+|-..|-..|+.++++..+-..- ...| |..-|..+
T Consensus 148 ~lfar-g~~eeA~~i~~EvIk------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~l----- 213 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIK------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRL----- 213 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHH------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHH-----
Confidence 33444 888888888888887 244466778889999999998888887774433 3333 55667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q psy767 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ----TYTKLMCGYA 205 (902)
Q Consensus 130 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----ty~~ll~a~~ 205 (902)
-....+.|.++.|.-.|.+..+.+ |++...+--=+..|-+.|+...|...|.++.......|.. +--.++..+.
T Consensus 214 -adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 214 -ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred -HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 788888888999998888888776 6666665566677888888888888888887763211221 2223456666
Q ss_pred HcCChhHHHHHHHhccc-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------------
Q psy767 206 KHGDMDSIKTKIPSLKP-QSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS--------------------- 263 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------------- 263 (902)
..++.+.|.+.++.... .+.......++++..++.+...++.|......+.....++|
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 77777778877776665 33445566777888888888888888888777776332222
Q ss_pred ------HHHHHHHHH-HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccch
Q psy767 264 ------AQTYTKLMC-GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPM 336 (902)
Q Consensus 264 ------~~ty~~LI~-a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (902)
..+...+|. ...+.+...+++.-|-.-..-.+.-++..+..+-.+.-+.+....+..+++ .
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~------------~ 439 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS------------P 439 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH------------H
Confidence 222111221 222334444554444433332222233333333333444444445544443 2
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 337 m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
+......-+..+|--+..+|...|.++.|.+.|++ +...|+..+ -.+|-..+.+.|+.++|++.+..|.
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 34444444688999999999999999999999998 455555555 4568888999999999999999975
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-08 Score=110.92 Aligned_cols=199 Identities=12% Similarity=-0.021 Sum_probs=137.7
Q ss_pred HHHHHHHHHHH--HCCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-
Q psy767 84 SHYNALLRVYL--DNEHTFSPTDFLAKLESQGIEPNRVT-YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE- 159 (902)
Q Consensus 84 ~~yn~li~~~~--~~g~~~~A~~l~~~M~~~g~~pd~~t-~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~- 159 (902)
..+..+..|.. ..|+++.|.+.+....+. .|+... +-.. ..++.+.|+.+.|.+.+....+.. |+.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~lla------A~aa~~~g~~~~A~~~l~~a~~~~--p~~~ 152 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKA------AEAAQQRGDEARANQHLEEAAELA--GNDN 152 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC--CcCc
Confidence 34555666654 479999999999887765 444333 3333 566778899999999999976543 333
Q ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 160 -GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 160 -~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
...-+....+...|+++.|...++.+.+... -+...+..+...+...|++++|.+++..+.+.+..........-...
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA 231 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2344457788889999999999999998852 25567888999999999999999999999987654333222111111
Q ss_pred H---HhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 239 I---LVSSDMASAEGILTMMSQAG---LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 239 ~---~~~g~~~~A~~l~~~m~~~g---~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
. ...+..+.....+..+.... .+.+...+..+...+...|+.++|.+++++..+.
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 1 11222222233444444332 1248889999999999999999999999986554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-10 Score=121.47 Aligned_cols=191 Identities=15% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY-QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALI 166 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~-~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li 166 (902)
.+-..+.+.|++++|+++++.-......|+...| ..+ ...+-..++++.|...++.+...+ +-+...+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~------a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLL------ADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccc-ccccccccccc
Confidence 4466677788888888888654433323433333 333 445556778888888888887665 23556677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCC-ccchhhHHHHHHHHHhcCCH
Q psy767 167 YGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE-LFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 245 (902)
.. ...+++++|.+++...-+. .++...+..++..+.+.++++++..+++.+..... ..+...+.....++...|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 76 6778888888887776554 34566667777778888888877777777654221 22334444445555556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
++|...+++..+.. +-|....+.++..+...|+.+++.+++..
T Consensus 163 ~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 163 DKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 66666666555542 22355555566666666666655555543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-08 Score=109.55 Aligned_cols=252 Identities=12% Similarity=0.014 Sum_probs=132.1
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
..+.|+++.|...|.++.+. .|+...+..+ .....+...|+++.|...++.+.+.+-......... ...|.+.
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l----~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll-~~~~~~~ 200 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEI----TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLA-EQAYIRT 200 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHH----HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHH
Confidence 35566666666666666543 3343322211 003455566666666666666655432111222222 2344555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 173 NDMASAEGILTMMSQAGLEPSA-------QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~-------~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+...- ..++.....+...+...|+.
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCH
Confidence 6666666666666665443221 133333444444444455555555544321 22344445555555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHh
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~ 325 (902)
+.|..++.+..+. +||... .++.+.+..++.+++++..+...+.
T Consensus 280 ~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-------------------------------- 323 (398)
T PRK10747 280 DTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-------------------------------- 323 (398)
T ss_pred HHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--------------------------------
Confidence 6666666666553 344311 1233334446677776666653211
Q ss_pred hhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCChHHHHHHHHHc
Q psy767 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKI 404 (902)
Q Consensus 326 ~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 404 (902)
.+-|...+.++-..|.+.|++++|.+.|+. +...|+..+|..+...+.+.|+.++|.+++++-
T Consensus 324 ----------------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 324 ----------------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred ----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112344556666677777777777777766 344455555666777777777777777777654
|
|
| >KOG0593|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-11 Score=122.19 Aligned_cols=58 Identities=34% Similarity=0.655 Sum_probs=54.5
Q ss_pred HhhhhcCCCcccccC------CCCCCCCCCCCCC-------------------CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 823 LGALTSDDLMPQPLQ------YVPSMFIPRGQPL-------------------RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 823 l~~~~~~~l~~~~~~------~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
++.+|.|+|+|+|++ +|.|+.+|+|+|| +||+|||.+|++|+||+.|||||+|.+
T Consensus 213 ~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~~e 292 (396)
T KOG0593|consen 213 LIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGFIE 292 (396)
T ss_pred HHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcChHHHHHHH
Confidence 688999999999987 8999999999998 999999999999999999999999998
Q ss_pred CCC
Q psy767 878 EVP 880 (902)
Q Consensus 878 ~~~ 880 (902)
...
T Consensus 293 r~~ 295 (396)
T KOG0593|consen 293 REL 295 (396)
T ss_pred HHH
Confidence 754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-08 Score=108.05 Aligned_cols=289 Identities=10% Similarity=-0.003 Sum_probs=202.6
Q ss_pred cCCCCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHH
Q psy767 54 CSEPSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLIS 132 (902)
Q Consensus 54 ~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~ 132 (902)
...|+++.|++.+..... ..|+. ..|-....++.+.|+++.|.+.+.+..+....+.....-.. ..
T Consensus 95 ~~~g~~~~A~~~l~~~~~-------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~------a~ 161 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD-------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR------TR 161 (409)
T ss_pred HhCCCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH------HH
Confidence 357888888888876655 33443 34445566678889999999999998765433222233334 67
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HHcC
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT-KLMCGY---AKHG 208 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~-~ll~a~---~~~g 208 (902)
.+...|+++.|...++.+.+.. |-+...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999998886 557778899999999999999999999999998754 333332 111222 2223
Q ss_pred ChhHHHHHHHhcccCCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHH
Q psy767 209 DMDSIKTKIPSLKPQSEL---FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQT---YTKLMCGYAKHGDMDS 282 (902)
Q Consensus 209 ~~~~a~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t---y~~LI~a~~~~g~~~~ 282 (902)
..+++...+..+....+. .+...+..+...+...|+.+.|..++++..+.. ||... ...........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence 333333344444333222 256677777788889999999999999999863 44332 1222233344577888
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCH
Q psy767 283 VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDM 362 (902)
Q Consensus 283 A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~ 362 (902)
+.+.++.. .....-.|+.....++...|.+.|++
T Consensus 318 ~~~~~e~~----------------------------------------------lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 318 LEKLIEKQ----------------------------------------------AKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HHHHHHHH----------------------------------------------HHhCCCChhHHHHHHHHHHHHHcccH
Confidence 88888752 23333334335667888899999999
Q ss_pred HHHHHHHHH---cCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 363 DSIRRLLAQ---NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 363 ~~A~~~~~~---m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++-.
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999993 4556677778899999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=0.0001 Score=81.94 Aligned_cols=487 Identities=11% Similarity=0.049 Sum_probs=310.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
++.++..|-.. ......+.|.-++.+..+. -|.+. -| .-+|++..-++.|.++++...+. ++-+
T Consensus 376 iP~sv~LWKaA----VelE~~~darilL~rAvec--cp~s~---dL------wlAlarLetYenAkkvLNkaRe~-iptd 439 (913)
T KOG0495|consen 376 IPRSVRLWKAA----VELEEPEDARILLERAVEC--CPQSM---DL------WLALARLETYENAKKVLNKAREI-IPTD 439 (913)
T ss_pred CCchHHHHHHH----HhccChHHHHHHHHHHHHh--ccchH---HH------HHHHHHHHHHHHHHHHHHHHHhh-CCCC
Confidence 44455556544 3456667788888777754 23221 12 44567778888888888887664 6778
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccc--hhhH
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTM----MSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL--CFSF 232 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~----M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~--~~~~ 232 (902)
...|.+-...=-.+|+.+...++..+ +...|+.-+...|-.=..+|-+.|..-....+.......+.... ..++
T Consensus 440 ~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw 519 (913)
T KOG0495|consen 440 REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTW 519 (913)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHH
Confidence 88888888888888888888887764 45668888888888777888888877777777777666554432 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHH--HHHHHHcC
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI--IHALAVSG 310 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl--~~~l~~~~ 310 (902)
..-...+.+.+.++-|..+|....+. ++.+...|...+..=-..|..++...+|++....-......-+ ....-..
T Consensus 520 ~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a- 597 (913)
T KOG0495|consen 520 LDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA- 597 (913)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-
Confidence 44555566677788888888877754 2556777888888778888888888888886554332221111 1112222
Q ss_pred CcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcccHHHHHHHH
Q psy767 311 HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGDYLDIIHAL 388 (902)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~~~~li~~~ 388 (902)
+++..+..++. ......| +...|-+-+..-....+++.|..+|.+- ...|...-|.--+...
T Consensus 598 --gdv~~ar~il~--------------~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 598 --GDVPAARVILD--------------QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred --CCcHHHHHHHH--------------HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 33333333331 1122233 5678999999999999999999999884 4455666677777777
Q ss_pred HHcCChHHHHHHHHHcccCCCCCCCHHHHHHH----HHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCC
Q psy767 389 AVSGHGEYIDEIISKIQPGVGYSADAANHIYH----LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP 464 (902)
Q Consensus 389 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~----l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~ 464 (902)
--.++.++|.+++++..+ .-|+...+... +-..++++.|...+..=.+.. |..+
T Consensus 662 r~ld~~eeA~rllEe~lk---~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c---P~~i---------------- 719 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALK---SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC---PNSI---------------- 719 (913)
T ss_pred HHhhhHHHHHHHHHHHHH---hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC---CCCc----------------
Confidence 778899999999999887 66776654322 236677777777665443331 1111
Q ss_pred CCccccchHHHHHH-HHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChh
Q psy767 465 GVGYSADAANHIYH-LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAF 543 (902)
Q Consensus 465 ~~g~~~~~~~li~~-~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~ 543 (902)
-..-++.- =.+.|.+-.|..+|+....+ +|.....|-..|+.-.+.|. .+.|..+..+..+. +.-+..
T Consensus 720 ------pLWllLakleEk~~~~~rAR~ildrarlk---NPk~~~lwle~Ir~ElR~gn-~~~a~~lmakALQe-cp~sg~ 788 (913)
T KOG0495|consen 720 ------PLWLLLAKLEEKDGQLVRARSILDRARLK---NPKNALLWLESIRMELRAGN-KEQAELLMAKALQE-CPSSGL 788 (913)
T ss_pred ------hHHHHHHHHHHHhcchhhHHHHHHHHHhc---CCCcchhHHHHHHHHHHcCC-HHHHHHHHHHHHHh-CCccch
Confidence 11222222 34778999999999988876 34456789999999999999 99999988885543 333445
Q ss_pred hHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhh----h
Q psy767 544 NLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSF----L 619 (902)
Q Consensus 544 t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~----~ 619 (902)
-|.--|+.. .+.++-.. ..+.|+++. -+ +|++..+-+.. .
T Consensus 789 LWaEaI~le----~~~~rkTk----------------s~DALkkce--------------~d--phVllaia~lfw~e~k 832 (913)
T KOG0495|consen 789 LWAEAIWLE----PRPQRKTK----------------SIDALKKCE--------------HD--PHVLLAIAKLFWSEKK 832 (913)
T ss_pred hHHHHHHhc----cCcccchH----------------HHHHHHhcc--------------CC--chhHHHHHHHHHHHHH
Confidence 555555332 24444333 556666665 23 66555544332 2
Q ss_pred HHHHHHHHHHHHHHhCCCCC-hHHHHHhhhcc-CCCCCCChHHHHHHHHhcCCC
Q psy767 620 DAEVLRILQVAEAEFGVGSN-TETLRDYVLPV-LSPPNQVSGEVFSQLRSVGVT 671 (902)
Q Consensus 620 ~~~al~ll~~m~~~~g~~P~-~~t~~~lv~~~-~~~~~~~~~~~~~~l~~~g~~ 671 (902)
.+.|++.|.+. - .+.|| -.+|.-+..-. .++.++.-.+++.....+...
T Consensus 833 ~~kar~Wf~Ra-v--k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 833 IEKAREWFERA-V--KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHH-H--ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 88899999888 2 34454 22333333222 224443344455555544333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-09 Score=112.91 Aligned_cols=253 Identities=15% Similarity=0.047 Sum_probs=108.9
Q ss_pred hHHhhcHHHHHHHhc-cccch-hHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHC
Q psy767 19 TEVSEATAEVTTVLG-ALGAF-LVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDN 96 (902)
Q Consensus 19 ~~~s~~~~~a~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~ 96 (902)
.-..+.+..|..++. ..... .+.+..++..+..-....++++.|...++.+.. .+.. +...+..++.. ...
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-----~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-----SDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccc-ccccccccccc-ccc
Confidence 334588888888884 34444 466777777777777889999999999999987 2211 34556677776 788
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhCCCH
Q psy767 97 EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT-FPISEGVFNALIYGHSQANDM 175 (902)
Q Consensus 97 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~yn~Li~~~~~~g~~ 175 (902)
+++++|.+++....+.. ++...+... +..+.+.++++.+..+++...... .+.+...|..+...+.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~------l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSA------LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccc--cccchhhHH------HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999998776543 455667777 888999999999999999976533 456778889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q psy767 176 ASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM 254 (902)
Q Consensus 176 ~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~ 254 (902)
++|++.|++..+. .|+ ......++..+...|+.+++..++....... ..++..+..+..++...|+.++|...|+.
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999999887 565 6678889999999999999888888776654 33344556778888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 255 m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
..+.. +.|..+...+..++.+.|+.++|.++.++.
T Consensus 240 ~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 240 ALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred ccccc-cccccccccccccccccccccccccccccc
Confidence 88753 557888888899999999999999998874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-06 Score=91.06 Aligned_cols=202 Identities=17% Similarity=0.075 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.....|..+...|...|++++|...+++..+.. +.+...+..+ ...|...|++++|.+.++...+.+ +.+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~-~~~~~ 100 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLAL------ALYYQQLGELEKAEDSFRRALTLN-PNNGD 100 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 346778899999999999999999999988653 2245666777 889999999999999999988765 55667
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI 239 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (902)
.+..+...+...|++++|.+.|++.......| ....+..+...+...|++++|...+......... ....+..+..++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 179 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHH
Confidence 88889999999999999999999998753222 3456777888899999999999999988775433 344566677778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
...|++++|...+++.... .+.+...+..+...+...|+.++|..+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8899999999999998876 355677788888999999999999998877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-05 Score=84.18 Aligned_cols=421 Identities=10% Similarity=0.042 Sum_probs=261.4
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchH
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFS 101 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~ 101 (902)
...+..|+.++...-+....|..+|.--+..=.++..+..|+-+|+.... -+|.--..|-..+..--..|++..
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt------~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT------ILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH------hcchHHHHHHHHHHHHHHhcccHH
Confidence 34555566666555555555655655556666666777777777776665 122222445555555556677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy767 102 PTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGI 181 (902)
Q Consensus 102 A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l 181 (902)
|.++|+.-. ...|+...|.+. |+.=.+-..++.|..+++...- +.|++.+|---.+.=-++|....|..+
T Consensus 160 aRqiferW~--~w~P~eqaW~sf------I~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 160 ARQIFERWM--EWEPDEQAWLSF------IKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHHHHHH--cCCCcHHHHHHH------HHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 777776655 346777777777 7777777777777777776654 346777777666666677777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH----HHcCChhHHHHHHHhcccCCCcc-chhhHHHHHHHHHhcCCHHHHHHH-----
Q psy767 182 LTMMSQAGLEPSAQTYTKLMCGY----AKHGDMDSIKTKIPSLKPQSELF-LCFSFQLTNLLILVSSDMASAEGI----- 251 (902)
Q Consensus 182 ~~~M~~~g~~pd~~ty~~ll~a~----~~~g~~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~l----- 251 (902)
|+...+. -.|...--.|..++ .+...++.|.-++.-....-+.. ....|.-+...--+.|+....+..
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 7766543 11222222233333 33444555555555443322221 122233333333335555444443
Q ss_pred ---HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC----HHHHHHH-----HHHcCCcccHHHHH
Q psy767 252 ---LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD----YLDIIHA-----LAVSGHGEYIDEVS 319 (902)
Q Consensus 252 ---~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~----~~tl~~~-----l~~~~~~~~~~~~~ 319 (902)
++.+.+.+ +.|..+|--.+..--..|+.+...++|+.....-.+.. |..++-+ +-..-...+++...
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 23333333 67788888888888888999999999998765432222 3333332 33333444555555
Q ss_pred HHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCCh
Q psy767 320 AIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYA----KHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHG 394 (902)
Q Consensus 320 ~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~----~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~ 394 (902)
+++. . ..+ =++....||..+--+|+ ++.++..|.+++.. ++..|....|-..|..-.+.+++
T Consensus 387 ~vyq---~---------~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 387 QVYQ---A---------CLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHH---H---------HHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 5432 1 122 34446678888777775 67899999999987 78888888899999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCHHHHHHHHH----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 395 EYIDEIISKIQPGVGYSADAANHIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t~i~~l~----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
+....++++..+ +.|........|+ ..|+.+.|..+|....+.-..+- | ..|
T Consensus 454 DRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm--p---ell---------------- 509 (677)
T KOG1915|consen 454 DRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM--P---ELL---------------- 509 (677)
T ss_pred HHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc--H---HHH----------------
Confidence 999999999998 8887765444443 78999999999998876522110 0 000
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
.-..|+-=..+|.++.|..+++.+....
T Consensus 510 -wkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 510 -WKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred -HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 1112222346799999999999988764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-06 Score=92.03 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=201.7
Q ss_pred HHHHHHHHH--CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 87 NALLRVYLD--NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 87 n~li~~~~~--~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
..+..+..+ .|++..|.++..+-.+.+-.|-. .|..- ..+--..|+.+.|-..+.+..+.--.++...+-+
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l-~~l~a------A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt 158 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVL-AYLLA------AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHH-HHHHH------HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence 344444443 68888888888887776655432 34444 6666778888888888888877633566677778
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH----HHHHHH
Q psy767 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL----TNLLIL 240 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 240 (902)
........|+.+.|..-+.++.+.+.. +.........+|.+.|++.....++..+.+.+...+...... ...++.
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877533 556677888888889999988888888888776665543322 222233
Q ss_pred hcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHH
Q psy767 241 VSSDMASAEG---ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDE 317 (902)
Q Consensus 241 ~~g~~~~A~~---l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~ 317 (902)
..++-..+.. .++.... ..+.+...-.+++.-+.++|+.++|.++..+..+....|....++..+.-.........
T Consensus 238 q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred HHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHH
Confidence 3333333333 3333332 23455667778888899999999999999988777776663333332222222222222
Q ss_pred HHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCChHH
Q psy767 318 VSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHGEY 396 (902)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~~~ 396 (902)
+.. .....+..| -.+.+|-..|.+.+.|.+|...|+. +...+...+|+.+.+++.+.|+..+
T Consensus 317 ~e~---------------~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 317 AEK---------------WLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHH---------------HHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 221 244455555 7788888889999999999999987 6666777778999999999999988
Q ss_pred HHHHHHHccc
Q psy767 397 IDEIISKIQP 406 (902)
Q Consensus 397 A~~l~~~m~~ 406 (902)
|.+++++-..
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 8888887553
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-06 Score=91.00 Aligned_cols=428 Identities=13% Similarity=0.059 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQ-LISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---- 158 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~-ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---- 158 (902)
.....|..-|..+..+.+|+..|+-..+...-||.-.... + -+.+.+...+..|.+.++..... + |+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmni------gni~~kkr~fskaikfyrmaldq-v-psink~ 273 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNI------GNIHFKKREFSKAIKFYRMALDQ-V-PSINKD 273 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeee------cceeeehhhHHHHHHHHHHHHhh-c-cccchh
Confidence 3344456667777888899999999888877777654322 2 45677888899999988765443 1 22
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchh------
Q psy767 159 --EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCF------ 230 (902)
Q Consensus 159 --~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~------ 230 (902)
....|.+--.+.+.|.++.|+.-|+...+. .||..+-..|+-++..-|+-++..+.|..|......++..
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 133455555678899999999999988776 6888876666666777899999999998886543322211
Q ss_pred ---hHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHHH---HH------------------HHHHHHHH
Q psy767 231 ---SFQLTNLLILV----------SSDMASAEGILTMMSQAGLEPSAQT---YT------------------KLMCGYAK 276 (902)
Q Consensus 231 ---~~~~~~~~~~~----------~g~~~~A~~l~~~m~~~g~~pd~~t---y~------------------~LI~a~~~ 276 (902)
.-+.+...+.. ..+.+.+.-.-..+..--+.||... |. .-..-|.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 22333332211 1122222222223333333444221 11 11345788
Q ss_pred cCCHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHH--
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGD--YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL-- 352 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~--~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~L-- 352 (902)
+|+++.|.++++-..+...... ..+=+.++.......+...+.+..+ +..+..-||.-
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad------------------~aln~dryn~~a~ 493 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD------------------IALNIDRYNAAAL 493 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH------------------HHhcccccCHHHh
Confidence 9999999999987766543322 1122222222222222222222221 11111122211
Q ss_pred ---HHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHH
Q psy767 353 ---MCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLIN 423 (902)
Q Consensus 353 ---i~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~ 423 (902)
-..-...|++++|...+++--.....-+ .-.+.-.+-..|+.++|++.|-++.. +-.+... +...|-.
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~---il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA---ILLNNAEVLVQIANIYEL 570 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHH
Confidence 1223456899999999998433211111 11234456688999999999988744 4444443 3344557
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q psy767 424 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANING 503 (902)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~ 503 (902)
..+..+|.+++...... .|+.|.+ ...+-..|-+.|+-..|.+..-.-..- -|
T Consensus 571 led~aqaie~~~q~~sl---ip~dp~i---------------------lskl~dlydqegdksqafq~~ydsyry---fp 623 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL---IPNDPAI---------------------LSKLADLYDQEGDKSQAFQCHYDSYRY---FP 623 (840)
T ss_pred hhCHHHHHHHHHHhccc---CCCCHHH---------------------HHHHHHHhhcccchhhhhhhhhhcccc---cC
Confidence 77888888887665543 3333311 223556688999998887765332221 22
Q ss_pred CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHH
Q psy767 504 EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLK 583 (902)
Q Consensus 504 ~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~ 583 (902)
....+..-|...|....- +++|+.+|++..- ++|+...|-.++.+|+- +.|++.. |.. +++
T Consensus 624 ~nie~iewl~ayyidtqf-~ekai~y~ekaal--iqp~~~kwqlmiasc~r---rsgnyqk---------a~d----~yk 684 (840)
T KOG2003|consen 624 CNIETIEWLAAYYIDTQF-SEKAINYFEKAAL--IQPNQSKWQLMIASCFR---RSGNYQK---------AFD----LYK 684 (840)
T ss_pred cchHHHHHHHHHHHhhHH-HHHHHHHHHHHHh--cCccHHHHHHHHHHHHH---hcccHHH---------HHH----HHH
Confidence 345667778888888888 9999999998644 68999999999977623 7889988 877 888
Q ss_pred HHHHh
Q psy767 584 RFIQA 588 (902)
Q Consensus 584 ~m~~~ 588 (902)
.....
T Consensus 685 ~~hrk 689 (840)
T KOG2003|consen 685 DIHRK 689 (840)
T ss_pred HHHHh
Confidence 87766
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-05 Score=83.87 Aligned_cols=388 Identities=12% Similarity=0.041 Sum_probs=257.5
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH----hhhCCCCCCHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF----MRDKTFPISEGVFNA 164 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~----m~~~~~~p~~~~yn~ 164 (902)
|.-+|++..-|+.|..+++..++ .++-+..+|.+. ...=-..|+.+.+.++.++ +...|+..+...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe-~iptd~~IWita------a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE-IIPTDREIWITA------AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHH------HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 34455666667778888887776 355577777777 6666777788777777654 455677777777777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 165 LIYGHSQANDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
=.-.|-+.|..--+..+.......|+.-. ..||..-...|.+.+.++-|..+|....+-.. .....+.....+--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhc
Confidence 77777777777777777777777776533 24777777778888887777777776655221 1122233333333346
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHH
Q psy767 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIV 322 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~ 322 (902)
|..++...+|++.... ++.....|-.....+-..|++..|..++.+.-..... +...-+.+.--.......+.+..++
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence 7777777777777654 2444555666666777777877777777765443221 3333344444445555666666554
Q ss_pred HHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEI 400 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l 400 (902)
....+..|+..+|..-+..-.-.++.++|.+++++ ++..|+-+- |..+...+-+.++.+.|.+.
T Consensus 642 --------------akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 642 --------------AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred --------------HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34566888999999988888899999999999987 455444443 77888889999999999999
Q ss_pred HHHcccCCCCCCCHHHHHHHHH----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHH
Q psy767 401 ISKIQPGVGYSADAANHIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHI 476 (902)
Q Consensus 401 ~~~m~~~~g~~pd~~t~i~~l~----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li 476 (902)
|..=.+ .-|+..-+...++ +.|.+..|..++++-.-+..-.+. .....|
T Consensus 708 Y~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~------------------------lwle~I 760 (913)
T KOG0495|consen 708 YLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL------------------------LWLESI 760 (913)
T ss_pred HHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch------------------------hHHHHH
Confidence 987766 4565554433332 778999999999988765222111 133467
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHH
Q psy767 477 YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCH 531 (902)
Q Consensus 477 ~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~ 531 (902)
.+=.+.|+.+.|..++......... +-..|.--|....+.++ -.+.+..++
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~---sg~LWaEaI~le~~~~r-kTks~DALk 811 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPS---SGLLWAEAIWLEPRPQR-KTKSIDALK 811 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc---cchhHHHHHHhccCccc-chHHHHHHH
Confidence 7788999999999998887765332 33456666665555555 344443333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-06 Score=85.09 Aligned_cols=295 Identities=14% Similarity=0.122 Sum_probs=162.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHH---HHHHHHHhcCCHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQ---LTNLLILVSSDMASA 248 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~A 248 (902)
+.+.++|.++|-+|.+.. .-+..+.-+|-+-|-+.|..+.|++++..+..+.......-.. -+..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468899999999998852 1133456678888889999999999988887765544332222 222224446677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhh
Q psy767 249 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNIC 328 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~ 328 (902)
+.+|..+.+.| ..-.....-|+..|-...+|++|+++-+++.+.+-.+....+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 77777666543 223344555666666666666666666553332211111100
Q ss_pred hcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 329 FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 329 ~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
...|.-|...+....+++.|..++++ ....+...- -..+...+...|+++.|.+.++.+.+
T Consensus 180 -----------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 180 -----------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred -----------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 11233333334444445555555544 222222111 12233444455555555555555544
Q ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCCh
Q psy767 407 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQI 485 (902)
Q Consensus 407 ~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~ 485 (902)
-+|+ |.+.+.. +..+|...|+.
T Consensus 243 ---Qn~~------------------------------------------------------yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 243 ---QNPE------------------------------------------------------YLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred ---hChH------------------------------------------------------HHHHHHHHHHHHHHHhCCH
Confidence 2222 2222222 55567777888
Q ss_pred HHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhh
Q psy767 486 DAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETF 565 (902)
Q Consensus 486 ~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~ 565 (902)
++....+..+....... ..-+.+-........ .+.|..++.+-..+ +|+..-|.-|+... +.....|...+
T Consensus 266 ~~~~~fL~~~~~~~~g~----~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~-l~daeeg~~k~- 336 (389)
T COG2956 266 AEGLNFLRRAMETNTGA----DAELMLADLIELQEG-IDAAQAYLTRQLRR--KPTMRGFHRLMDYH-LADAEEGRAKE- 336 (389)
T ss_pred HHHHHHHHHHHHccCCc----cHHHHHHHHHHHhhC-hHHHHHHHHHHHhh--CCcHHHHHHHHHhh-hccccccchhh-
Confidence 88877777766653211 222333222222222 67787777775554 69999999999776 54446666666
Q ss_pred HhhhhhccCcchHHHHHHHHHHhh
Q psy767 566 EYCVNQFRATPWKGELLKRFIQAE 589 (902)
Q Consensus 566 ~~~~~~~~a~~~~~~ll~~m~~~g 589 (902)
.+. +++.|....
T Consensus 337 --------sL~----~lr~mvge~ 348 (389)
T COG2956 337 --------SLD----LLRDMVGEQ 348 (389)
T ss_pred --------hHH----HHHHHHHHH
Confidence 545 777776655
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.8e-07 Score=99.64 Aligned_cols=278 Identities=12% Similarity=0.064 Sum_probs=195.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc--chhhHHHHHHHHHhcCCHHHHHH
Q psy767 174 DMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF--LCFSFQLTNLLILVSSDMASAEG 250 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~ 250 (902)
+..+|+..|...... .+|+ ....-+-++|-..++++++.++|+.+....+-. ....|.+.+.-+- +.-.--.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHH
Confidence 457788888775554 3444 344556778888888888888888887654322 1222322222221 1111111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhc
Q psy767 251 ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFH 330 (902)
Q Consensus 251 l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 330 (902)
+-+.+.+.. +-...+|.++-+.|.-.++.+.|++.|++..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAi--------------------------------------- 448 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAI--------------------------------------- 448 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhh---------------------------------------
Confidence 222222221 5567899999999999999999999998732
Q ss_pred ccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc---HHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 331 WLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD---YLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 331 ~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
.+.| ..++|+.+-.-+.....+|.|...|+. +.. +..+ |.-+...|.+.++++.|+-.|++..
T Consensus 449 ----------Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 449 ----------QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred ----------ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 2345 567888888888888999999999997 333 3444 4558888999999999999999998
Q ss_pred cCCCCCCCHHHHHHH----HHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHh
Q psy767 406 PGVGYSADAANHIYH----LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLIN 481 (902)
Q Consensus 406 ~~~g~~pd~~t~i~~----l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k 481 (902)
+ +.|....++.. +-+.|+.++|+.++++.... +|..+. .-|.....+..
T Consensus 517 ~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l---------------------~~~~~~~il~~ 569 (638)
T KOG1126|consen 517 E---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPL---------------------CKYHRASILFS 569 (638)
T ss_pred c---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCch---------------------hHHHHHHHHHh
Confidence 8 89987654433 45889999999999987653 333221 24556666888
Q ss_pred cCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 482 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 482 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
.+++++|+..++++.+.. |....+|-.+...|.+.|. .+.|+.-|-.+.+..-+
T Consensus 570 ~~~~~eal~~LEeLk~~v---P~es~v~~llgki~k~~~~-~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELV---PQESSVFALLGKIYKRLGN-TDLALLHFSWALDLDPK 623 (638)
T ss_pred hcchHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHcc-chHHHHhhHHHhcCCCc
Confidence 899999999999998862 3345678889999999999 89998888887765433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-06 Score=87.73 Aligned_cols=297 Identities=11% Similarity=0.068 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
.|++..|+++..+-.+.|-.| ...|..-..+--..|+.+.+-..+.+..+...........+...++...|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555554444222 2233444444555555555555555555544444444444445555555666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcc
Q psy767 252 LTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHW 331 (902)
Q Consensus 252 ~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (902)
..++.+.+ +.+..+......+|.+.|++.....++..|.+.+.-.+... .
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~------------ 225 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------A------------ 225 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------H------------
Confidence 66666554 66778889999999999999999999999877765433110 0
Q ss_pred cccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCc-cc-HHHHHHHHHHcCChHHHHHHHHHcccCCC
Q psy767 332 LEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVN-GD-YLDIIHALAVSGHGEYIDEIISKIQPGVG 409 (902)
Q Consensus 332 ~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g 409 (902)
.....+|..+++-....+..+.-...|+..+..... |. -.+++.-+.++|+.++|.++..+..+ .+
T Consensus 226 -----------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~ 293 (400)
T COG3071 226 -----------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQ 293 (400)
T ss_pred -----------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hc
Confidence 011245566666666666666656666664333211 22 45677778888888889888888877 66
Q ss_pred CCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHH
Q psy767 410 YSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAY 489 (902)
Q Consensus 410 ~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~ 489 (902)
..|.-.+ ...+.+-++...-.+..+...+.++.+|. -.+++-..|.+.+.|.+|.
T Consensus 294 ~D~~L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~------------------------L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 294 WDPRLCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL------------------------LLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred cChhHHH-HHhhcCCCCchHHHHHHHHHHHhCCCChh------------------------HHHHHHHHHHHhhHHHHHH
Confidence 7776222 22334666777767777776666555543 1334555588999999999
Q ss_pred HHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q psy767 490 RIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR 541 (902)
Q Consensus 490 ~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd 541 (902)
..|+....... +...|+-+.+.+.+.|+ ..+|.+..++-...-..|+
T Consensus 349 ~~leaAl~~~~----s~~~~~~la~~~~~~g~-~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 349 EALEAALKLRP----SASDYAELADALDQLGE-PEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHhcCC----ChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHHhcCCC
Confidence 99996665532 45789999999999999 8999999988544333443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-06 Score=87.41 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=110.7
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
...+..+ ...|...|++++|...++...+.. +.+...+..+...|...|++++|.+.|++..+.+ ..+...+
T Consensus 31 ~~~~~~l------a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQL------ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL 102 (234)
T ss_pred HHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 4556666 888889999999999999887654 4556788888899999999999999999888764 2355677
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSEL-FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 276 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~ 276 (902)
..+...+...|++++|.+.++........ .....+..+...+...|++++|...+.+..... +.+...|..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 77788888888888888888877653221 122233334444455566666666666555442 2234455555556666
Q ss_pred cCCHHHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQ 289 (902)
Q Consensus 277 ~g~~~~A~~lf~~ 289 (902)
.|++++|...+++
T Consensus 182 ~~~~~~A~~~~~~ 194 (234)
T TIGR02521 182 RGQYKDARAYLER 194 (234)
T ss_pred cCCHHHHHHHHHH
Confidence 6666666666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-06 Score=95.37 Aligned_cols=296 Identities=12% Similarity=0.062 Sum_probs=207.0
Q ss_pred CCCCCCCHHHHHHHHHHHHH------CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH
Q psy767 76 ELDVPLDISHYNALLRVYLD------NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF 149 (902)
Q Consensus 76 ~~g~~pd~~~yn~li~~~~~------~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~ 149 (902)
..++.-+...--.++++++. .-+.++|...|...... +.-+......+ -.+|...+++++|+++|+.
T Consensus 306 ~~~l~~~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h-~~nt~wvl~q~------GrayFEl~~Y~~a~~~F~~ 378 (638)
T KOG1126|consen 306 SFGLKDDASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSH-HYNTGWVLSQL------GRAYFELIEYDQAERIFSL 378 (638)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-cCCchHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 34455443333344444433 23467888888885543 23233445555 8899999999999999999
Q ss_pred hhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 150 MRDKT--FPISEGVFNALIYGHSQANDMASAEGILT-MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 150 m~~~~--~~p~~~~yn~Li~~~~~~g~~~~A~~l~~-~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
..+.. ..-+...|.+.+--+-+ +-++..+. ++.... +-...||.++-++|.-.++.+.|++.|++..+-+..
T Consensus 379 ~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 379 VRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 87643 11245788887765432 23333332 233321 335689999999999999999999999998875543
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHH
Q psy767 227 FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYT---KLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII 303 (902)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~---~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~ 303 (902)
...+|+.+..-+....++|.|...|+... ..|...|| .|--.|.+.++++.|+-.|+..
T Consensus 454 -faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA------------- 515 (638)
T KOG1126|consen 454 -FAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA------------- 515 (638)
T ss_pred -cchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHHHhh-------------
Confidence 23455555555666788899999998877 44555554 4667899999999999988763
Q ss_pred HHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-
Q psy767 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD- 380 (902)
Q Consensus 304 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~- 380 (902)
..+.| |.+....+...+.+.|+.|+|+++|++ ....+..+.
T Consensus 516 ------------------------------------~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 516 ------------------------------------VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred ------------------------------------hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 23455 566777788899999999999999998 344444443
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH----HHHHHHcCCHHHHHHHHHHHHhc
Q psy767 381 YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH----IYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
--..+..+...+++++|+..++++++ +.|+..+. -..|-+.|+.+.|+.-|.-+...
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 23456667788999999999999998 89998763 34456889999999988877653
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00027 Score=73.15 Aligned_cols=396 Identities=13% Similarity=0.069 Sum_probs=218.3
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
+.-+..++++..|..+++--...+-+-...+-.-+ ...+.+.|++++|..++..+.+.+ .|+...+-.|.-++
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWi------a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWI------AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHH------HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHH
Confidence 55566788999999999876644322222222223 556678999999999999887766 55666676676666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHH
Q psy767 170 SQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAE 249 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 249 (902)
.-.|.+.+|..+-.... -+.-.-..|+..--+.++-++...+...+.... ...-.+..+....-.+.+|.
T Consensus 102 FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHH
Confidence 67788888877655432 233444566677778888888777777665422 22233444455566788999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcC------CcccHHHHHHHH
Q psy767 250 GILTMMSQAGLEPSAQTYTKLMC-GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSG------HGEYIDEVSAIV 322 (902)
Q Consensus 250 ~l~~~m~~~g~~pd~~ty~~LI~-a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~------~~~~~~~~~~l~ 322 (902)
+++...... .|+....|.-+. .|.+..-++-+.+++.--.... |+. ++..-+.+|. .....++...+.
T Consensus 172 dvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdS-tiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 172 DVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDS-TIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCc-HHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 999998875 566666666554 5667777777777776543322 111 1111111121 111222222221
Q ss_pred HHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH-----GDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYI 397 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~-----g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A 397 (902)
+ .+-.. | -.+.-.++. .+-+.|++++-.+-.. .+..-..++--|.+.++..+|
T Consensus 247 d----------------N~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~-IPEARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 247 D----------------NIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH-IPEARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred h----------------ccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh-ChHhhhhheeeecccccHHHH
Confidence 1 11000 0 011112222 2345566555432111 111122244456677788888
Q ss_pred HHHHHHcccCCCCCCCHHHH----HHHHH-HcC---CHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccc
Q psy767 398 DEIISKIQPGVGYSADAANH----IYHLI-NKG---QIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYS 469 (902)
Q Consensus 398 ~~l~~~m~~~~g~~pd~~t~----i~~l~-~~g---~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~ 469 (902)
..+.+.+.. .+|-.+-+ ..++. ..| ...-|.+.|+..-.....-.+. |+
T Consensus 305 ~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI----------------pG---- 361 (557)
T KOG3785|consen 305 ISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI----------------PG---- 361 (557)
T ss_pred HHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc----------------cc----
Confidence 777777755 66665532 11111 111 2344555554433221111110 00
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q psy767 470 ADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGG-FLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVL 548 (902)
Q Consensus 470 ~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n-~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~l 548 (902)
-.++-..+.-.-++++.+-+++.+..--..+ +.|| .+.++.+..|. ..+|.++|-+.....++ |..+|.++
T Consensus 362 --RQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd----D~Fn~N~AQAk~atgn-y~eaEelf~~is~~~ik-n~~~Y~s~ 433 (557)
T KOG3785|consen 362 --RQSMASYFFLSFQFDDVLTYLNSIESYFTND----DDFNLNLAQAKLATGN-YVEAEELFIRISGPEIK-NKILYKSM 433 (557)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----chhhhHHHHHHHHhcC-hHHHHHHHhhhcChhhh-hhHHHHHH
Confidence 1123333445557777777777776543222 2233 36777788888 88888888777655443 55666554
Q ss_pred H-HHhcccccccCcchh
Q psy767 549 I-KAHVLKEDYTGAVET 564 (902)
Q Consensus 549 l-~a~~~~~~~~g~~~~ 564 (902)
+ +++ . +.++...
T Consensus 434 LArCy-i---~nkkP~l 446 (557)
T KOG3785|consen 434 LARCY-I---RNKKPQL 446 (557)
T ss_pred HHHHH-H---hcCCchH
Confidence 4 444 5 7788877
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.8e-06 Score=95.88 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHC-----CCchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHH---------HcCCHHHHHH
Q psy767 81 LDISHYNALLRVYLDN-----EHTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYC---------QDGNIEGATK 145 (902)
Q Consensus 81 pd~~~yn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~---------~~g~~~~A~~ 145 (902)
.+...|...+.+-... +..++|..+|++..+. .|+ ...|..+ ..+|. ..+++++|..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~L------a~~~~~~~~~g~~~~~~~~~~A~~ 325 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCAL------AECYLSMAQMGIFDKQNAMIKAKE 325 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHH------HHHHHHHHHcCCcccchHHHHHHH
Confidence 4566777777774321 3456899999998854 554 3444444 33332 2345889999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 146 l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
.++...+.+ |-+...|..+-..+...|++++|...|++..+.+ |+ ...|..+...+...|++++|...++...+.+
T Consensus 326 ~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 326 HAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988876 5677888888888999999999999999998874 54 5577888888999999998888888776654
Q ss_pred C
Q psy767 225 E 225 (902)
Q Consensus 225 ~ 225 (902)
+
T Consensus 403 P 403 (553)
T PRK12370 403 P 403 (553)
T ss_pred C
Confidence 3
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.7e-06 Score=85.71 Aligned_cols=379 Identities=13% Similarity=0.087 Sum_probs=181.2
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCC----------
Q psy767 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFP---------- 156 (902)
Q Consensus 87 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~---------- 156 (902)
|.+--.+.+.|.++.|..-|+...+. .||-.+--.| +-++..-|+-+...+.|..|..--..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl------~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNL------IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhh------hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 33444456778888888888887654 4666554444 55555578888888888887643222
Q ss_pred --CCHHHHHHHH-----HHHHhCC--CHHHHHHHHHHHHHCCCCCCHHH---H----------HHH--------HHHHHH
Q psy767 157 --ISEGVFNALI-----YGHSQAN--DMASAEGILTMMSQAGLEPSAQT---Y----------TKL--------MCGYAK 206 (902)
Q Consensus 157 --p~~~~yn~Li-----~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~t---y----------~~l--------l~a~~~ 206 (902)
|+....|--| +-+-+.. +.++++-.-..+..--+.||-.. | ..| ..-+.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 2333333222 2222211 12222222222222222333210 0 000 123667
Q ss_pred cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV--SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.|+++.|.++++-+.+.+...-...-+-+..++.. ..++..|.+.-+...... .-|......--+.-..+|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 88888888888887776555444333333333333 345556665555544321 222222222222334567888888
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCC-CCCHHHHHHHHHHHHHcCCHH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL-EPSAQTYTKLMCGYAKHGDMD 363 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~-~p~~~t~~~Li~~y~~~g~~~ 363 (902)
+.|++.......-....+...+.+... +.++++...+ ..-.++ .-+..+.--+...|-...+..
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~-~~ldeald~f--------------~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEAL-GNLDEALDCF--------------LKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHh-cCHHHHHHHH--------------HHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 888876544322222222222222111 1122221111 111111 123444445555566666666
Q ss_pred HHHHHHHHc-CCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH---HHHHHHH-HcCCHHHHHHHHHHH
Q psy767 364 SIRRLLAQN-GSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA---NHIYHLI-NKGQIDAAYRIVNTL 437 (902)
Q Consensus 364 ~A~~~~~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t~i~~l~-~~g~~~~A~~~~~~m 437 (902)
.|++++-+. ..-|..|. .+-|...|-+.|+-..|.+.+-.--+ +-|... .++.+|. ...-+++|..+|++.
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666665542 22233333 44555666666666666555444322 333222 2344433 444455666666554
Q ss_pred HhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHH--HHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHH
Q psy767 438 ARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYH--LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 515 (902)
Q Consensus 438 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~--~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~ 515 (902)
.- +.|++ .-+.++.+ +-+.|++..|+++++.+..+- |.++....+|++.
T Consensus 653 al---iqp~~-----------------------~kwqlmiasc~rrsgnyqka~d~yk~~hrkf---pedldclkflvri 703 (840)
T KOG2003|consen 653 AL---IQPNQ-----------------------SKWQLMIASCFRRSGNYQKAFDLYKDIHRKF---PEDLDCLKFLVRI 703 (840)
T ss_pred Hh---cCccH-----------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---ccchHHHHHHHHH
Confidence 32 22222 12223322 446677777777776666542 2245566666666
Q ss_pred HHHcCC
Q psy767 516 MVKTNQ 521 (902)
Q Consensus 516 ~~~~g~ 521 (902)
+...|.
T Consensus 704 ~~dlgl 709 (840)
T KOG2003|consen 704 AGDLGL 709 (840)
T ss_pred hccccc
Confidence 666664
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=85.68 Aligned_cols=388 Identities=13% Similarity=0.063 Sum_probs=227.4
Q ss_pred HHHhcccCCCCCCcCcccccCccccccCCCCCCCC-HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHH
Q psy767 48 YLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLD-ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLI 125 (902)
Q Consensus 48 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll 125 (902)
...+.|-++|.+++|...+....+ +.|| .+.|...-.+|...|+++++.+.-...++ +.|+-+ .+..-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~-------l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RR- 189 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE-------LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRR- 189 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh-------cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHH-
Confidence 345677889999999999999988 7888 88899999999999999999988877774 345422 12222
Q ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH---------HHHCC--CCCCH
Q psy767 126 SNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTM---------MSQAG--LEPSA 194 (902)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~---------M~~~g--~~pd~ 194 (902)
.+++-..|++++|+.= +|-.++..++....-.--+.++++. |.+.+ +-|+.
T Consensus 190 -----A~A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~ 251 (606)
T KOG0547|consen 190 -----ASAHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA 251 (606)
T ss_pred -----HHHHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH
Confidence 3344444555544321 1122222222222111111111111 11111 12222
Q ss_pred HHHHHHHHHHH-----------------------H--cC---ChhHHHHHHHhcc-------cCCCccc-----hhhHHH
Q psy767 195 QTYTKLMCGYA-----------------------K--HG---DMDSIKTKIPSLK-------PQSELFL-----CFSFQL 234 (902)
Q Consensus 195 ~ty~~ll~a~~-----------------------~--~g---~~~~a~~l~~~~~-------~~~~~~~-----~~~~~~ 234 (902)
....+....+. . .+ .+..+...+.+-- ..+.... ..+...
T Consensus 252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22222221111 0 00 0111111111000 0000000 011111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCccc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~ 314 (902)
...++.-+|+.-.|..-|+..+.....++. .|--+-.+|....+.++.+..|.....
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---------------------- 388 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---------------------- 388 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh----------------------
Confidence 122233378888888888888876433322 266677788888888888888876322
Q ss_pred HHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHc
Q psy767 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVS 391 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~ 391 (902)
+.| |..+|..-..++.-.+++++|..=|++- ...|... .|..+..+..+.
T Consensus 389 ---------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 389 ---------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred ---------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 222 4556666677777788899999999873 3333222 266677777788
Q ss_pred CChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 392 GHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 392 g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
+++++++..|++.+++..--|..++ |-..+..+++++.|.+.|+.....-...... .++..+
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-----------------~v~~~p 504 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-----------------IVNAAP 504 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-----------------cccchh
Confidence 8999999999999887777777777 4677889999999999998877542110000 001111
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.+.-.+..+-=.+++..|.++++...+.+ |..-..|-.|...-...|+ .++|+++|++-.
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D---pkce~A~~tlaq~~lQ~~~-i~eAielFEksa 564 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELD---PKCEQAYETLAQFELQRGK-IDEAIELFEKSA 564 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccC---chHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 11111222223488999999999988763 3344689999999999999 999999999843
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-05 Score=81.18 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=174.8
Q ss_pred CCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHH
Q psy767 56 EPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135 (902)
Q Consensus 56 ~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~ 135 (902)
+...+.|...|.+|.. +-+-+..+--+|-+-|-+.|..+.|+++...+.++ ||...-..++.-..|-.=|.
T Consensus 48 s~Q~dKAvdlF~e~l~------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred hcCcchHHHHHHHHHh------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHH
Confidence 3467889999999987 12222333446777788899999999999988765 34322222222234477788
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCChh
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ----TYTKLMCGYAKHGDMD 211 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----ty~~ll~a~~~~g~~~ 211 (902)
..|-+|.|+.+|..+.+.+ .--....-.|+..|-...+|++|+++-+++.+.|-.+..+ -|.-|...+....+.+
T Consensus 119 ~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 8999999999999988755 2234567788999999999999999999888876555432 3445666666778888
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
.|...+.+..+.+..... ...++..+....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.
T Consensus 198 ~A~~~l~kAlqa~~~cvR-Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 198 RARELLKKALQADKKCVR-ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHhhCcccee-hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899988888775544333 3345666677789999999999999988666666778889999999999999999999876
Q ss_pred cCCCCCCHHHHHHHHHH
Q psy767 292 SSLVNGDYLDIIHALAV 308 (902)
Q Consensus 292 ~~~~~p~~~tl~~~l~~ 308 (902)
.....++...++.-+..
T Consensus 277 ~~~~g~~~~l~l~~lie 293 (389)
T COG2956 277 ETNTGADAELMLADLIE 293 (389)
T ss_pred HccCCccHHHHHHHHHH
Confidence 66555554444443333
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00035 Score=75.10 Aligned_cols=248 Identities=7% Similarity=-0.076 Sum_probs=182.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC-C-CCHHHHHHHHHHcCCcccHHH
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV-N-GDYLDIIHALAVSGHGEYIDE 317 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~-~-p~~~tl~~~l~~~~~~~~~~~ 317 (902)
....+.+++.+=.......|++-+...-+-...+.....+++.|+.+|+++.+... . .+..++..++-.-.....+.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 33457888888888888888777776666666677788899999999999987633 1 245555555544333222221
Q ss_pred -HHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCCh
Q psy767 318 -VSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHG 394 (902)
Q Consensus 318 -~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~ 394 (902)
+..+.. -. +--..|..++..-|+-.++.++|...|++ ++..|.... |+.|.+-|....+.
T Consensus 318 LA~~v~~---------------id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 318 LAQNVSN---------------ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHHHHH---------------hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 111110 11 22346777888889999999999999998 455544444 99999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc
Q psy767 395 EYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA 470 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~ 470 (902)
..|.+-++...+ +.|..+. +=.+|.-.+...-|+-+|++...-..-++.
T Consensus 381 ~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR------------------------ 433 (559)
T KOG1155|consen 381 HAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR------------------------ 433 (559)
T ss_pred HHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH------------------------
Confidence 999999999988 8998775 345666788888999999988765333222
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
....+-.+|.+.++.++|.+.|......+... ...+..+...+-+.++ .++|...+++-.+
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte---~~~l~~LakLye~l~d-~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTE---GSALVRLAKLYEELKD-LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 13346667899999999999999998876553 3578899999999999 9999999888544
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00025 Score=76.54 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=112.9
Q ss_pred HHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHH
Q psy767 356 YAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYR 432 (902)
Q Consensus 356 y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~ 432 (902)
+.-+|+.-.|..-|+. +...+..++ |.-+..+|....+.++....|++..+...-.||.+- --..+.-.+++++|..
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4557888888888887 555666666 888888999999999999999999884444555542 2334455678888888
Q ss_pred HHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH---HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchH
Q psy767 433 IVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVG 509 (902)
Q Consensus 433 ~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~ 509 (902)
-|++..+ ++|.. ++. +.-+..|.+++++++..|++...+- |..+.+|
T Consensus 416 DF~Kai~---L~pe~------------------------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy 465 (606)
T KOG0547|consen 416 DFQKAIS---LDPEN------------------------AYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVY 465 (606)
T ss_pred HHHHHhh---cChhh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHH
Confidence 8887765 33332 232 3344668999999999999998873 2356899
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 510 GFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 510 n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
|.+...+...++ +++|++.|+...+
T Consensus 466 ~~fAeiLtDqqq-Fd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 466 NLFAEILTDQQQ-FDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhHHh-HHHHHHHHHHHHh
Confidence 999999999999 9999999999655
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=90.88 Aligned_cols=60 Identities=3% Similarity=-0.129 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----HccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 474 NHIYHLINKGQIDAAYRIVNTLA----RSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 474 ~li~~~~k~g~~~~A~~l~~~m~----~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.+-..|.+.+++.+|.++|.+.. ..+...+....+|..|...|...|+ .+.|+++.+...
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~-~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN-YEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc-HHHHHHHHHHHH
Confidence 35555888899999999887643 3344444556788999999999999 999999988854
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-05 Score=81.23 Aligned_cols=255 Identities=8% Similarity=-0.008 Sum_probs=179.1
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCC
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGL--EPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~--~pd~~ty~~ll~a~~~~g~ 209 (902)
.++-.....+++..=.+.....|++-+...-+-...+.-...+++.|+.+|++..+... --|..||+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444556777777777777778654444434444445566789999999999988742 1266788877654433322
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+. .+..-...-....+.+.-++...+...++.+.|...|+...+.+ +.....|+.|-+-|....+...|.+-|+.
T Consensus 315 Ls----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 LS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22 12222112222334455666777888899999999999999875 55677899999999999999999999986
Q ss_pred hccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 290 SGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRL 368 (902)
Q Consensus 290 m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~ 368 (902)
.. .+.| |-..|-.|..+|.-.+...-|+-.
T Consensus 390 Av-------------------------------------------------di~p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 390 AV-------------------------------------------------DINPRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HH-------------------------------------------------hcCchhHHHHhhhhHHHHHhcchHHHHHH
Confidence 32 1233 678899999999999999999999
Q ss_pred HHH-cCCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 369 LAQ-NGSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 369 ~~~-m~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
|++ ....|..+ -|.+|...|.+.++.++|.+.|.+........-+... +-..+-+.++.++|-..|++..+.
T Consensus 421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 988 44444444 3999999999999999999999998772223222222 445556888999999988887764
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=8e-06 Score=92.10 Aligned_cols=246 Identities=15% Similarity=0.131 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHC-----C-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh-----
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQ-----G-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD----- 152 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~----- 152 (902)
.+...+...|...|+++.|..++++..+. | ..|...+ + .+.+...|...+++++|..+|+.+..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~---~--l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS---M--LNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH---H--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 44555888999999999999999986653 3 1222222 2 12337788889999999999998753
Q ss_pred --CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 153 --KTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA-----GLE-PSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 153 --~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-----g~~-pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
...+--..+++.|-.+|.+.|++++|...++...+. |.. |... .++.+...|+..+.+++|..++..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~---- 350 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK---- 350 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH----
Confidence 222233466888888999999999998888766432 222 2222 455667778888888888877763
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHH
Q psy767 224 SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII 303 (902)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~ 303 (902)
+.+++.........--..+|+.|-..|...|++++|.++|++....
T Consensus 351 ------------------------al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~---------- 396 (508)
T KOG1840|consen 351 ------------------------ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI---------- 396 (508)
T ss_pred ------------------------HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----------
Confidence 3334442221111123568999999999999999999999974221
Q ss_pred HHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH----c-CCC
Q psy767 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG--LEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ----N-GSS 375 (902)
Q Consensus 304 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g--~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~----m-~~~ 375 (902)
..+.+ ..+ ....++-|-..|.+.+++++|.++|.+ | ...
T Consensus 397 ---------------------------------~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 397 ---------------------------------LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred ---------------------------------HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 11111 122 234566666777777777777777765 1 111
Q ss_pred CCcc----cHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 376 LVNG----DYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 376 ~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
+..+ +|..|...|...|+++.|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1121 25566666667777766666665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.2e-06 Score=96.60 Aligned_cols=213 Identities=11% Similarity=0.036 Sum_probs=137.7
Q ss_pred CCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHHH---------CCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 57 PSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYLD---------NEHTFSPTDFLAKLESQGIEPNRVTYQQLIS 126 (902)
Q Consensus 57 g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~~---------~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~ 126 (902)
+++++|...|+.... ..|+. ..|..+...|.. .+++++|...+++..+.... +...+..+
T Consensus 275 ~~~~~A~~~~~~Al~-------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~l-- 344 (553)
T PRK12370 275 YSLQQALKLLTQCVN-------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLL-- 344 (553)
T ss_pred HHHHHHHHHHHHHHh-------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHH--
Confidence 345677777777776 45544 456555544432 24478999999999875422 56677777
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q psy767 127 NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYA 205 (902)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~ 205 (902)
...+...|++++|...|++..+.+ |.+...|..+...|...|++++|+..|++..+.. |+.. .+..++..+.
T Consensus 345 ----g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 345 ----GLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITY 417 (553)
T ss_pred ----HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 778889999999999999998876 5667889999999999999999999999999874 4432 3334444566
Q ss_pred HcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy767 206 KHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRR 285 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~ 285 (902)
..|++++|...+++......+.....+..+..++...|+.++|...+.++.... +.+...++.+...|+..| ++|..
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~ 494 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALP 494 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHH
Confidence 678888888877776544322233334444445555666666666655543321 112223333444444444 24444
Q ss_pred HHHH
Q psy767 286 LLAQ 289 (902)
Q Consensus 286 lf~~ 289 (902)
.++.
T Consensus 495 ~l~~ 498 (553)
T PRK12370 495 TIRE 498 (553)
T ss_pred HHHH
Confidence 4443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-05 Score=87.69 Aligned_cols=310 Identities=13% Similarity=0.071 Sum_probs=179.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-Hc--
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA-KH-- 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~-~~-- 207 (902)
...+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+.+. -|+...|...+..+. -.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 4566889999999999977433 34334455667778999999999999999999998 477777766555554 22
Q ss_pred ---CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 208 ---GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 208 ---g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.+.+....+++++...-+.........+.. +....--..+...+..+..+|+++ +|+.|-..|....+..-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 234555666666654332211111100000 000000112333334444444322 1222222232222222222
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHH--HHHHHHHHHcCCH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTY--TKLMCGYAKHGDM 362 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~--~~Li~~y~~~g~~ 362 (902)
+++....... ..+....... ....-.|....| .-+...|-..|++
T Consensus 164 ~l~~~~~~~l-------------------------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 164 SLVEEYVNSL-------------------------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred HHHHHHHHhh-------------------------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 2222211100 0000000000 011234555444 5557788999999
Q ss_pred HHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHH
Q psy767 363 DSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 363 ~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~ 436 (902)
++|+.++++ +...|..+. |..-...|.+.|++.+|.+.++..+. +.+...- ....+.+.|++++|.+++..
T Consensus 211 ~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999997 777777766 78888999999999999999999987 5553331 45666799999999999998
Q ss_pred HHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy767 437 LARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 437 m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
..+... +|.. .+++.=+-| .....-.+|.+.|++..|++.|..+...
T Consensus 288 Ftr~~~-~~~~-----~L~~mQc~W---------f~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 288 FTREDV-DPLS-----NLNDMQCMW---------FETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred hcCCCC-Cccc-----CHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 877643 2111 111110000 0112445588999999999888877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-07 Score=65.26 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy767 153 KTFPISEGVFNALIYGHSQANDMASAEGILTMMS 186 (902)
Q Consensus 153 ~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~ 186 (902)
+|++||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4778888888888888888888888888888874
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.002 Score=72.00 Aligned_cols=423 Identities=9% Similarity=0.044 Sum_probs=238.7
Q ss_pred hcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHH
Q psy767 51 SKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKL 130 (902)
Q Consensus 51 ~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~l 130 (902)
....++|++..-++.|+..+. .+.+......|...|......+-++-+..++++.++- .|.. -+--
T Consensus 110 q~l~~Q~~iT~tR~tfdrALr----aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eey------ 175 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALR----ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEY------ 175 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHH----hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHH------
Confidence 344677888888888888887 3444444556999999999999999999999998864 3433 3344
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHCCCCCCH--HHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT------FPISEGVFNALIYGHSQANDM---ASAEGILTMMSQAGLEPSA--QTYTK 199 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~yn~Li~~~~~~g~~---~~A~~l~~~M~~~g~~pd~--~ty~~ 199 (902)
|..+++.+++++|-+.+......+ .+.+-..|+-+-...++.-+. -...++++.+... -+|. ..|.+
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 888899999999999988875322 245556677766666665433 2333444544433 4554 47888
Q ss_pred HHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHH
Q psy767 200 LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS----------------S------DMASAEGILTMMSQ 257 (902)
Q Consensus 200 ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------g------~~~~A~~l~~~m~~ 257 (902)
|...|.+.|+++.|..++++....-..... +..+...|... + +++-...-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~tvrD--Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVMTVRD--FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhheehhh--HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999988887664333222 22222222211 1 11222222332222
Q ss_pred CC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhh
Q psy767 258 AG-----------LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVN 326 (902)
Q Consensus 258 ~g-----------~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~ 326 (902)
.+ -+.++..|..-+.. ..|+..+-...|.+....
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~--------------------------------- 376 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT--------------------------------- 376 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc---------------------------------
Confidence 21 01112222221111 122233333333321111
Q ss_pred hhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcc------cHHHHHHHHHHcCChHHHHHH
Q psy767 327 ICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNG------DYLDIIHALAVSGHGEYIDEI 400 (902)
Q Consensus 327 ~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~------~~~~li~~~~~~g~~~~A~~l 400 (902)
+.. ... +-.-...|..+.+.|-..|+++.|..+|++-...+-.. .|-.-...=.++.+++.|+++
T Consensus 377 ----vdP---~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 377 ----VDP---KKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred ----cCc---ccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 000 000 11123568888999999999999999999843322111 144444555567778888888
Q ss_pred HHHcccCCCCCCC----------HHH------HHHHHH----HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhh
Q psy767 401 ISKIQPGVGYSAD----------AAN------HIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK 460 (902)
Q Consensus 401 ~~~m~~~~g~~pd----------~~t------~i~~l~----~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~ 460 (902)
.+.... ..-.|. ... +.+.|. ..|-++....+++++.......|..
T Consensus 448 m~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi------------- 513 (835)
T KOG2047|consen 448 MRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI------------- 513 (835)
T ss_pred HHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-------------
Confidence 887654 222211 111 112222 5566777777777776643333221
Q ss_pred cCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHH--cCCCHHHHHHHHHHHHHCCC
Q psy767 461 TNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK--TNQPIDKVLAVCHRLTDENL 538 (902)
Q Consensus 461 ~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~--~g~~~~~A~~l~~~m~~~g~ 538 (902)
+.|.-.-+....-++++.++++.=...- ..|.....||..+.-+.+ .|..++.|..+|++..+ |+
T Consensus 514 -----------i~NyAmfLEeh~yfeesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 514 -----------IINYAMFLEEHKYFEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 1121111334456778877776533221 122233567765555443 34458999999999888 78
Q ss_pred CCChhhHHHHHHHhcccccccCcchh
Q psy767 539 HPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 539 ~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.|...-+.-|+=|- +.+ +.|....
T Consensus 581 pp~~aKtiyLlYA~-lEE-e~GLar~ 604 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAK-LEE-EHGLARH 604 (835)
T ss_pred CHHHHHHHHHHHHH-HHH-HhhHHHH
Confidence 77766665555222 222 4455555
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=63.71 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 258 ~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|+.||..|||+||++||+.|++++|+++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00063 Score=73.15 Aligned_cols=350 Identities=11% Similarity=0.065 Sum_probs=241.5
Q ss_pred cCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHH
Q psy767 54 CSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISK 133 (902)
Q Consensus 54 ~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~ 133 (902)
-..|++..|+.+|+.-.. ..|+...|++.|+.-.+-...+.|..+++...- +.|+..+|--- ...
T Consensus 152 E~LgNi~gaRqiferW~~-------w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wiky------arF 216 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME-------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKY------ARF 216 (677)
T ss_pred HHhcccHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHH------HHH
Confidence 445889999999998876 789999999999999999999999999999884 46999999777 777
Q ss_pred HHHcCCHHHHHHHHHHhhhC-C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcC
Q psy767 134 YCQDGNIEGATKILEFMRDK-T-FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA---QTYTKLMCGYAKHG 208 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~-~-~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~ll~a~~~~g 208 (902)
=-++|.+..|.++|+...+. | -.-+...|++...-=.++..++.|.-+|.-.... -|.. ..|......=-+.|
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhc
Confidence 78899999999999987653 1 0112234444444445667888999999887765 3332 34555544445556
Q ss_pred ChhHHHHH--------HHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH------
Q psy767 209 DMDSIKTK--------IPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSA--QTYTKLMC------ 272 (902)
Q Consensus 209 ~~~~a~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~ty~~LI~------ 272 (902)
+....... ++.+.. ..+.+..++.-++.+....|+.+...++|+..... ++|-. .-|..-|.
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~-~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVS-KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHH-hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHH
Confidence 65554432 222222 33445566777777888899999999999999865 34421 12332222
Q ss_pred --HHHHcCCHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcC----CcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC
Q psy767 273 --GYAKHGDMDSVRRLLAQSGSSLVNGD-YLDIIHALAVSG----HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS 345 (902)
Q Consensus 273 --a~~~~g~~~~A~~lf~~m~~~~~~p~-~~tl~~~l~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~ 345 (902)
.=....+++.+.++|+.... +.|. ..|+.......+ +...+..+..++ -..-|.-|-
T Consensus 373 lyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiL--------------G~AIG~cPK 436 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKIL--------------GNAIGKCPK 436 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHH--------------HHHhccCCc
Confidence 22356788899999988766 3332 233333222211 222333444432 235688999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-HHHHHH-
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-NHIYHL- 421 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~i~~l- 421 (902)
..+|-..|..-.+.+++|.+..++++. ...|... .|......-...|+++.|..+|.....+..+ |-. -+..+|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l--dmpellwkaYI 514 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL--DMPELLWKAYI 514 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc--ccHHHHHHHhh
Confidence 999999999999999999999999984 3333332 2766777777889999999999998873222 222 234444
Q ss_pred ---HHcCCHHHHHHHHHHHHhc
Q psy767 422 ---INKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 422 ---~~~g~~~~A~~~~~~m~~~ 440 (902)
...|..+.|..+++.+...
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh
Confidence 4899999999999998875
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0018 Score=72.63 Aligned_cols=421 Identities=10% Similarity=0.025 Sum_probs=256.0
Q ss_pred cCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHH
Q psy767 54 CSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISK 133 (902)
Q Consensus 54 ~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~ 133 (902)
+..|+.++|-........ +-..+.+.|..+--.+-...++++|+..|+.....+ +-|...|.-+ --.
T Consensus 52 ~~lg~~~ea~~~vr~glr------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDl------slL 118 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLR------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDL------SLL 118 (700)
T ss_pred hcccchHHHHHHHHHHhc------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHH------HHH
Confidence 445666666555444443 333467889998888888999999999999988654 2256666666 444
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHH
Q psy767 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG-LEPSAQTYTKLM------CGYAK 206 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~ll------~a~~~ 206 (902)
-++.|+++..........+.. +.....|..+..++.-.|+...|..++++..+.- -.|+...|.-.. .....
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 567788888887777776643 3445789999999999999999999999998764 246666554332 34567
Q ss_pred cCChhHHHHHHHhcccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCF-SFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC-GYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~-a~~~~g~~~~A~ 284 (902)
.|..+.|.+.+...... ..+.. .-.+-..++.+.+++++|..++..+..+ .||-.-|.-.+. ++.+--+.-+++
T Consensus 198 ~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~l 273 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEAL 273 (700)
T ss_pred cccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHH
Confidence 78888888877665442 12222 2234455667799999999999999987 577777766555 444344444444
Q ss_pred -HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q psy767 285 -RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMD 363 (902)
Q Consensus 285 -~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~ 363 (902)
.+|....+.........-+.. ......+..+.+.... +.+.+.|+++-.....+|-.-=-++.=++
T Consensus 274 k~ly~~ls~~y~r~e~p~Rlpl-svl~~eel~~~vdkyL------------~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 274 KALYAILSEKYPRHECPRRLPL-SVLNGEELKEIVDKYL------------RPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHHHHHHhhcCcccccchhccH-HHhCcchhHHHHHHHH------------HHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 667665443222111111111 1111122222222211 24667777654333333322111111111
Q ss_pred H-HHHHHHHcCCC----------CCccc---HH--HHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHH----HHHHH
Q psy767 364 S-IRRLLAQNGSS----------LVNGD---YL--DIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHI----YHLIN 423 (902)
Q Consensus 364 ~-A~~~~~~m~~~----------~~~~~---~~--~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i----~~l~~ 423 (902)
+ +..+...+... ...|+ |. .++..+-..|+++.|.+.++.... -+|+.+-+. ..+.+
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH 417 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHh
Confidence 1 12222222111 01222 44 577888899999999999999977 788877643 56789
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH-HHHHHHHhcCChHHHHHHHHHHHHccCCC
Q psy767 424 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA-NHIYHLINKGQIDAAYRIVNTLARSANIN 502 (902)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~li~~~~k~g~~~~A~~l~~~m~~~~~~~ 502 (902)
.|.+++|..++++..+-.. |+. ... -+..-..+..+.++|.++.......+...
T Consensus 418 ~G~l~eAa~~l~ea~elD~---------------------aDR----~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDT---------------------ADR----AINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred cCChHHHHHHHHHHHhccc---------------------hhH----HHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 9999999999998876411 000 011 13444678899999999998888776311
Q ss_pred CCcc----chHHH--HHHHHHHcCCCHHHHHHHHHHHH
Q psy767 503 GEQL----PVGGF--LVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 503 ~~~~----~~~n~--li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
...+ .+|-. =..+|.+.|+ +..|++=|....
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k-~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNK-LGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHH-HHHHHHHHhhHH
Confidence 1111 12211 2456777777 777777666653
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00045 Score=76.48 Aligned_cols=447 Identities=11% Similarity=0.054 Sum_probs=244.2
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNS 128 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~ 128 (902)
++.+...|++++|......+.. +.+-|...+-+=+-++++.+++++|+.+.+.-. +... +.+. +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~~~~---f---- 83 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG--ALLVINSFF---F---- 83 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcchhh---H----
Confidence 6777888888888888888887 445566677777888889999999986654422 1111 1111 2
Q ss_pred HHHHHHH--HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q psy767 129 KLISKYC--QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ--TYTKLMCGY 204 (902)
Q Consensus 129 ~li~~~~--~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~ll~a~ 204 (902)
=.+|| +.+..++|+..++..... |..+-..=...+-+.|++++|+++|+.+.+.+.. |.. .-..++.+-
T Consensus 84 --EKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 84 --EKAYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA 156 (652)
T ss_pred --HHHHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 34454 788999999988832221 2234555556778889999999999999877532 221 111222211
Q ss_pred HHcCChhHHHHHHHhcccCCCccchhhHHHH-H--HHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHH-H
Q psy767 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLT-N--LLILVSSDMASAEGILTMMSQAG-------------LEPSAQT-Y 267 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd~~t-y 267 (902)
.. -.+. +.+.... .+ ..+|..+ + ..+...|++.+|++++....+-+ +.-...+ -
T Consensus 157 a~----l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 157 AA----LQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred Hh----hhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 11 1111 2222222 22 2233222 2 22344799999999998873211 1111111 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhccccc-chHHhcCCCC
Q psy767 268 TKLMCGYAKHGDMDSVRRLLAQSGSSLV--NGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEG-PMMSQAGLEP 344 (902)
Q Consensus 268 ~~LI~a~~~~g~~~~A~~lf~~m~~~~~--~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~~~g~~p 344 (902)
--|...+-..|+-++|..+|........ .|....+..-+.+......+-....+..+-..++.+.+. ..+......-
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2244566788999999999998776543 233333333333333222221111111111111111000 0011111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHc--CChHHHHHHHHHcccCCCCCCCH---HH--H
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVS--GHGEYIDEIISKIQPGVGYSADA---AN--H 417 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~g~~pd~---~t--~ 417 (902)
...--++++..|. +..+.+.++-...........+..++..+.+. ..+..|.+++..... -.|+. +. .
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~---~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD---GHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---cCCchhHHHHHHH
Confidence 1222233333333 34455555555443322222244455444322 246777777777765 34544 22 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHH-HHHhcCChHHHHHHHHHHH
Q psy767 418 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIY-HLINKGQIDAAYRIVNTLA 496 (902)
Q Consensus 418 i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~-~~~k~g~~~~A~~l~~~m~ 496 (902)
+......|+++.|.+++...... .+...+..+|.|.+...|. .+.+.+.-+.|..++.+..
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~------------------~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLES------------------WKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh------------------hhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 44456999999999999855421 1223455677777777544 4788888777887777655
Q ss_pred HccCCCC----CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q psy767 497 RSANING----EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAH 552 (902)
Q Consensus 497 ~~~~~~~----~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 552 (902)
..-...- .....+.-+...-.+.|. .++|..+++++.+. -.+|..+...++.++
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~-~~ea~s~leel~k~-n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGN-EEEASSLLEELVKF-NPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCc-hHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 4321111 111223333444446788 89999999999874 357888888888887
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0023 Score=66.43 Aligned_cols=505 Identities=12% Similarity=0.091 Sum_probs=262.9
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
.-+....++..|..+++.-...+-.-...+---+..++.+.|++++|+..|.-+.+.. .|+...+..|...+--.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3345567888888888776543311111222234456778899999999998887754 567777777777777778888
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|..+-....+. +.....++.+.-+.++-++...+...+...
T Consensus 109 eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~~~~fh~~LqD~--------------------------------- 150 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKRILTFHSSLQDT--------------------------------- 150 (557)
T ss_pred HHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---------------------------------
Confidence 888776654331 111222222222233333333332222210
Q ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 292 SSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 292 ~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
..--.+|.......-.+.+|++++++
T Consensus 151 ------------------------------------------------------~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 151 ------------------------------------------------------LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred ------------------------------------------------------HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 00011122222223345666666666
Q ss_pred cCC-CCCcccHHH-HHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH--HHHH--H--HcCCHHHHHHHHHHHHhccCC
Q psy767 372 NGS-SLVNGDYLD-IIHALAVSGHGEYIDEIISKIQPGVGYSADAANH--IYHL--I--NKGQIDAAYRIVNTLARSANI 443 (902)
Q Consensus 372 m~~-~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~--i~~l--~--~~g~~~~A~~~~~~m~~~~~i 443 (902)
.-. .+.-...|. +.-.|.+..-++.+.++++--.+ -.||+.-. +.+| . -.|+..++ -.+.+... +
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~---q~pdStiA~NLkacn~fRl~ngr~ae~--E~k~ladN--~ 249 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR---QFPDSTIAKNLKACNLFRLINGRTAED--EKKELADN--I 249 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH---hCCCcHHHHHHHHHHHhhhhccchhHH--HHHHHHhc--c
Confidence 322 222222333 33445567777777777777666 33444321 2222 1 22333222 22222221 0
Q ss_pred CCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhc-----CChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHH
Q psy767 444 NGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINK-----GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK 518 (902)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~-----g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~ 518 (902)
+. -|..+..++|. .+-+.|++++-.+... .+.+--.|+-.|.+
T Consensus 250 ~~--------------------------~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~------IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 250 DQ--------------------------EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH------IPEARLNLIIYYLN 297 (557)
T ss_pred cc--------------------------cchhHHHHHHcCeEEEeCCccHHHhchHHHhh------ChHhhhhheeeecc
Confidence 00 01122222222 3345555555443332 12233344455666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhh
Q psy767 519 TNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRIT 598 (902)
Q Consensus 519 ~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~ 598 (902)
.++ +.+|+.+++++.- ..|-......+..+. +- -+.|..+. +.. |.. .|+..-..+ ...
T Consensus 298 q~d-VqeA~~L~Kdl~P--ttP~EyilKgvv~aa-lG-Qe~gSreH----lKi--Aqq----ffqlVG~Sa---~ec--- 356 (557)
T KOG3785|consen 298 QND-VQEAISLCKDLDP--TTPYEYILKGVVFAA-LG-QETGSREH----LKI--AQQ----FFQLVGESA---LEC--- 356 (557)
T ss_pred ccc-HHHHHHHHhhcCC--CChHHHHHHHHHHHH-hh-hhcCcHHH----HHH--HHH----HHHHhcccc---ccc---
Confidence 666 7777777776532 233333333333222 10 02222111 111 222 444443332 111
Q ss_pred hcccccccchhhhHHHHHhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhhccCC-CCCCChHHHHHHHHhcCCCCccchH
Q psy767 599 DLSTSIHGEVNSLYDLMLSFLDAEVLRILQVAEAEFGVGSNTETLRDYVLPVLS-PPNQVSGEVFSQLRSVGVTIGSITS 677 (902)
Q Consensus 599 ~~~~~i~p~~~~~~~li~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~ 677 (902)
-.+.+-...-.++.....+++++..++.+ +..=..-|...|+ +..+.+. +.....++++-.+.+..+.....+.
T Consensus 357 ---DTIpGRQsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~ 431 (557)
T KOG3785|consen 357 ---DTIPGRQSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYK 431 (557)
T ss_pred ---ccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHH
Confidence 11111133333334455589999999999 7776666665554 4444444 6666677777777666666666665
Q ss_pred HHHHHH-HHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCC-cchhhhhhhhhhhh
Q psy767 678 AYVVHM-LRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEE-GEKEEEGEEKTAGQ 755 (902)
Q Consensus 678 ~~l~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 755 (902)
..+-.+ .+.+.++-|+++.-++.+..+.+.+.+.++.-+-+.+.+=...+-|+.+- +-.| -|+|+ |
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE----~lDP~pEnWe-G------- 499 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE----ILDPTPENWE-G------- 499 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----ccCCCccccC-C-------
Confidence 555555 79999999999999999999999999999988778888777777777664 3223 23332 2
Q ss_pred hhhhhhhHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhccccccccchHHHHhhh
Q psy767 756 LIDMDRIFAGNVLLDIYKATRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGL 811 (902)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (902)
.+.+-.-++-.++..- +++--++.++.+++-+...+=+=-++..+.+++..
T Consensus 500 ----KRGACaG~f~~l~~~~-~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa 550 (557)
T KOG3785|consen 500 ----KRGACAGLFRQLANHK-TDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA 550 (557)
T ss_pred ----ccchHHHHHHHHHcCC-CCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3334444555555522 22223566777887777765444444444444443
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0029 Score=72.25 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=53.0
Q ss_pred HHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
-..|+.+.|+.++...+. |..+..+.|..|+.++|-++-++ .-|....-.|...|-..|++.+|.
T Consensus 923 ES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 923 ESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred hcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555544443322 33334444445555555555544 335566667788888888888888
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l 321 (902)
.+|.+. .++..++.-|...+.-++...+
T Consensus 988 ~FfTrA---------qafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 988 KFFTRA---------QAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred HHHHHH---------HHHHHHHHHHHhcCHHHHHHHH
Confidence 888763 3455555555555555554443
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=81.45 Aligned_cols=223 Identities=10% Similarity=0.009 Sum_probs=164.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
+-|-++|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..+...|+.++.+-...- +.+.....-...++...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67778889999999999999888776 5677788888899999999998888887765532 22222223344455667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHH
Q psy767 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIV 322 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~ 322 (902)
++.++|.++|+...+.. +.++....++..+|.-.++++.|+..|+++.+-|+.
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------------------- 356 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------------------- 356 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--------------------------
Confidence 89999999999888764 566777778888999999999999999985443332
Q ss_pred HHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----cCCCCCccc-HHHHHHHHHHcCChHHH
Q psy767 323 CFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ----NGSSLVNGD-YLDIIHALAVSGHGEYI 397 (902)
Q Consensus 323 ~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~----m~~~~~~~~-~~~li~~~~~~g~~~~A 397 (902)
+...|+.+--+|.-.+++|-++.-|.+ +...+...+ |..+.......|+...|
T Consensus 357 ----------------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 357 ----------------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred ----------------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 556677777777778888888887776 332222323 77777788888999999
Q ss_pred HHHHHHcccCCCCCCCHHHH---HHHH-HHcCCHHHHHHHHHHHHhc
Q psy767 398 DEIISKIQPGVGYSADAANH---IYHL-INKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 398 ~~l~~~m~~~~g~~pd~~t~---i~~l-~~~g~~~~A~~~~~~m~~~ 440 (902)
.+.|+.... -.|++..- +..+ .+.|++++|..+++.....
T Consensus 415 ~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 415 KRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999998876 45655543 2333 3889999999999887654
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.001 Score=74.47 Aligned_cols=361 Identities=11% Similarity=0.038 Sum_probs=205.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
....|..+..++.-.|++..|..+.++..+.- -.|+...|.-...----.....+.|.++.|++.+..-... +.-...
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 44668888888888999999999999988764 2456555544311000123445778899998888664332 221222
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChhHHH-HHHHhcccCCCccchhhHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA-KHGDMDSIK-TKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~-~~g~~~~a~-~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
.-.+-...+.+.+++++|..+|..+... .||..-|...+..+. +-.+.-++. .+|....+.-.......... ..+
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp-lsv 297 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP-LSV 297 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc-HHH
Confidence 3345567788899999999999999988 688887776555444 333333333 66665554322221111111 111
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHH
Q psy767 239 ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEV 318 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~ 318 (902)
+....-.+....++..+.+.|+++-.....+|-. .-...+ +.+++. ..+.+.+..++.....
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~----~le~Lv--------t~y~~~L~~~~~f~~~--- 359 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVA----FLEKLV--------TSYQHSLSGTGMFNFL--- 359 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhH----HHHHHH--------HHHHhhcccccCCCcc---
Confidence 1112223344455556666665543332222211 111000 111100 0000000001000000
Q ss_pred HHHHHHhhhhhcccccchHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCCh
Q psy767 319 SAIVCFVNICFHWLEGPMMSQAGLEPSAQTYT--KLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHG 394 (902)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~--~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~ 394 (902)
-...--.|....|+ .++..|-+.|+++.|..+++. +...|+.+. |..=...+...|..
T Consensus 360 ------------------D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 360 ------------------DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLL 421 (700)
T ss_pred ------------------cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCCh
Confidence 00111256666555 457889999999999999987 454444443 55666888999999
Q ss_pred HHHHHHHHHcccCCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccc
Q psy767 395 EYIDEIISKIQPGVGYSADAAN---HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSAD 471 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t---~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 471 (902)
++|...+++..+. =.||.+- ...-+.+.+++++|.++.....+..- .....+++.=+-| .
T Consensus 422 ~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~------~~~~~L~~mqcmW---------f 484 (700)
T KOG1156|consen 422 DEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF------GAVNNLAEMQCMW---------F 484 (700)
T ss_pred HHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc------chhhhHHHhhhHH---------H
Confidence 9999999999872 2344331 33334599999999999998887632 1111122211111 0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 472 AANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 472 ~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
....-.+|.+.|++.+|++-|..+...-
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1113345889999999999998887763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0014 Score=75.18 Aligned_cols=287 Identities=12% Similarity=0.111 Sum_probs=190.3
Q ss_pred HHHHHCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 91 RVYLDNEHTFSPTDFLAKLESQGIEPNRVTY-QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 91 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~-~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
..+...|++++|++.+..-.. .-+|..++ ... ...+.+.|+.++|..+|..+.+++ |.|..-|..+..+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~r------A~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKR------AELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 345778999999999977543 34565544 444 888899999999999999999987 45555566666666
Q ss_pred HhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHhcccCCCccchhhHHHHHHHHHhcC
Q psy767 170 SQA-----NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD-SIKTKIPSLKPQSELFLCFSFQLTNLLILVSS 243 (902)
Q Consensus 170 ~~~-----g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~-~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 243 (902)
.-. .+.+...++|+++...- |......-+.-.+.....+. .+...+..+..+|+ ++.+..+-.+|....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChh
Confidence 333 25788889999887653 43333322222222211221 23344444444443 345555566666555
Q ss_pred CHHHHHHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy767 244 DMASAEGILTMMSQA----G----------LEPSAQTY--TKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALA 307 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~----g----------~~pd~~ty--~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~ 307 (902)
+.+-...++..+... | -.|+...| .-+-..|-..|++++|+++.++...
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--------------- 222 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--------------- 222 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---------------
Confidence 666666666665432 1 13555455 5557778899999999999987322
Q ss_pred HcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc-HH-HH
Q psy767 308 VSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD-YL-DI 384 (902)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~-~~-~l 384 (902)
..|+ +..|..-...|-+.|++.+|.+.++.-..-....- .| -.
T Consensus 223 ----------------------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~ 268 (517)
T PF12569_consen 223 ----------------------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKC 268 (517)
T ss_pred ----------------------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 2354 56778888999999999999999987544322222 34 46
Q ss_pred HHHHHHcCChHHHHHHHHHcccCCCCCCCH--HH---------HHHHHHHcCCHHHHHHHHHHHHhcc
Q psy767 385 IHALAVSGHGEYIDEIISKIQPGVGYSADA--AN---------HIYHLINKGQIDAAYRIVNTLARSA 441 (902)
Q Consensus 385 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t---------~i~~l~~~g~~~~A~~~~~~m~~~~ 441 (902)
+..+.++|+.++|.+++....+ .+..|.. .. .-.+|.+.|++..|++.|..+.+.+
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr-~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTR-EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcC-CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6677899999999999999988 4444432 11 1345669999999999998887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-05 Score=79.83 Aligned_cols=227 Identities=12% Similarity=0.059 Sum_probs=181.0
Q ss_pred HHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 47 VYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS 126 (902)
Q Consensus 47 ~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~ 126 (902)
+-+...|.+-|.+.+|++.|...+. ..|-+.||-.|-++|.+-..+..|+.+|.+-.+. .|-.+||-.=
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g-- 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG-- 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh--
Confidence 3457788888999999988888876 4567788889999999999999999999987753 5666666432
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 127 NSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
....+-..++.++|.++++...+.. +.++....++..+|.-.++++-|+.+|+.+.+.|+. +...|+.+--+|.-
T Consensus 296 ---~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 296 ---QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred ---hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 1556667789999999999887765 557777888888899999999999999999999976 88899999889999
Q ss_pred cCChhHHHHHHHhcccCCCccchhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCFS--FQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.+++|-++.-|......-..+.... +.-+..+....|++..|.+.|+.....+ ..+...+|.|.-.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 9999999988888766544333322 2223333445799999999999888765 556778999988899999999999
Q ss_pred HHHHHh
Q psy767 285 RLLAQS 290 (902)
Q Consensus 285 ~lf~~m 290 (902)
.++...
T Consensus 450 sll~~A 455 (478)
T KOG1129|consen 450 SLLNAA 455 (478)
T ss_pred HHHHHh
Confidence 999864
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.018 Score=64.66 Aligned_cols=464 Identities=10% Similarity=0.049 Sum_probs=239.6
Q ss_pred HHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC------CCCCCHH
Q psy767 46 FVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ------GIEPNRV 119 (902)
Q Consensus 46 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~------g~~pd~~ 119 (902)
|...+....+.|-.+-+.++++..+. .++..-+-.|..++..++.++|.+.+...... .-+.+..
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk---------~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q 211 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLK---------VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ 211 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHh---------cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence 33444444455555566666666555 34455677788888888888888888775432 1223444
Q ss_pred HHHHHHHhHHHHHHHHHcCCHHH---HHHHHHHhhhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 120 TYQQLISNSKLISKYCQDGNIEG---ATKILEFMRDKTFPISE--GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 120 t~~~ll~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p~~--~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
.|.-+ -+..++.-+.-. ..+++..+..+ -+|. ..|++|.+-|.+.|.+++|.++|++.... ..+.
T Consensus 212 lw~el------cdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tv 281 (835)
T KOG2047|consen 212 LWLEL------CDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTV 281 (835)
T ss_pred HHHHH------HHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heeh
Confidence 45444 444443332221 22333333222 1222 45677777777777777777777766554 2334
Q ss_pred HHHHHHHHHHHHcCC----------------------hhHHHHHHHhcccCCCcc--------chhhHHHHHH-HHHhcC
Q psy767 195 QTYTKLMCGYAKHGD----------------------MDSIKTKIPSLKPQSELF--------LCFSFQLTNL-LILVSS 243 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~----------------------~~~a~~l~~~~~~~~~~~--------~~~~~~~~~~-~~~~~g 243 (902)
.-|+.+..+|+..-. ++-...-|+.+....... ++.....+.. +-...|
T Consensus 282 rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~ 361 (835)
T KOG2047|consen 282 RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG 361 (835)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC
Confidence 444455555443211 111222222222211110 0001111111 111245
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCc----cc
Q psy767 244 DMASAEGILTMMSQAG-----LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHG----EY 314 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~g-----~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~----~~ 314 (902)
+..+....|.+....- +-.-...|..+-..|-.+|+++.|..+|++...-. -+....+...+|.++.. ..
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHhhhh
Confidence 6666666666665431 11223457777777778888888888887643322 12233445555555532 23
Q ss_pred HHHHHHHHHHhhhhhcccccc--hHHhcCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CCCccc-HHHH
Q psy767 315 IDEVSAIVCFVNICFHWLEGP--MMSQAGLE------PSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS-SLVNGD-YLDI 384 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~--~m~~~g~~------p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~~~-~~~l 384 (902)
.+.+..+..- .+ +.-... .--+.+.+ -+...|...++.--..|-++....+++++-. +...|. ....
T Consensus 441 ~~~Al~lm~~--A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 441 FEAALKLMRR--AT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred HHHHHHHHHh--hh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3333332110 00 000000 01111222 2344566666666778888888888887422 222222 1111
Q ss_pred HHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH----HHHHH---HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHh
Q psy767 385 IHALAVSGHGEYIDEIISKIQPGVGYSADAANH----IYHLI---NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRH 457 (902)
Q Consensus 385 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----i~~l~---~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~ 457 (902)
..-+-.+..++++.++|++=... =--|+.+.+ +..+. ...+++.|..+|++..+.. +|.
T Consensus 518 AmfLEeh~yfeesFk~YErgI~L-Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C--pp~----------- 583 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISL-FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC--PPE----------- 583 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCcc-CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CHH-----------
Confidence 12223455568999999987762 223444432 22222 4457999999999998832 232
Q ss_pred hhhcCCCCCccccchHHHHHHHH----hcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy767 458 MVKTNQPGVGYSADAANHIYHLI----NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRL 533 (902)
Q Consensus 458 ~~~~~~~~~g~~~~~~~li~~~~----k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m 533 (902)
.+-.+...|+ +.|....|+.+++..... .........||+.|.--+..=. +..-..++++.
T Consensus 584 -------------~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYeka 648 (835)
T KOG2047|consen 584 -------------HAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKA 648 (835)
T ss_pred -------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHH
Confidence 1223444444 458888999999996654 2222345789998887666544 45567777776
Q ss_pred HHCCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 534 TDENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 534 ~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
.+. -||...-...++=+ =-+.+.|.++.
T Consensus 649 Ie~--Lp~~~~r~mclrFA-dlEtklGEidR 676 (835)
T KOG2047|consen 649 IES--LPDSKAREMCLRFA-DLETKLGEIDR 676 (835)
T ss_pred HHh--CChHHHHHHHHHHH-HHhhhhhhHHH
Confidence 665 57766554444322 12236777777
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00015 Score=71.40 Aligned_cols=182 Identities=18% Similarity=0.138 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHH----H
Q psy767 348 TYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYH----L 421 (902)
Q Consensus 348 t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~----l 421 (902)
+..-|--.|...|+...|..-+++ +...|.... |..+...|.+.|..+.|.+-|++... +.|+.-.+++. +
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 455667789999999999999998 555555544 88999999999999999999999988 78887766554 5
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH-HHHHHHHhcCChHHHHHHHHHHHHccC
Q psy767 422 INKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA-NHIYHLINKGQIDAAYRIVNTLARSAN 500 (902)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~li~~~~k~g~~~~A~~l~~~m~~~~~ 500 (902)
|..|++++|...|+..... |..|..++++ |+..+..+.|+.+.|...|+.......
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----------------------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----------------------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----------------------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 8999999999999998764 4455555655 577778899999999999999988743
Q ss_pred CCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchh
Q psy767 501 INGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVET 564 (902)
Q Consensus 501 ~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~ 564 (902)
. .+...-.+.....+.|+ .-.|..+++.....|. +++.+.-..|+-. - ..|+.+.
T Consensus 171 ~---~~~~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~~~-~~A~sL~L~iria-k---~~gd~~~ 225 (250)
T COG3063 171 Q---FPPALLELARLHYKAGD-YAPARLYLERYQQRGG-AQAESLLLGIRIA-K---RLGDRAA 225 (250)
T ss_pred C---CChHHHHHHHHHHhccc-chHHHHHHHHHHhccc-ccHHHHHHHHHHH-H---HhccHHH
Confidence 2 33456778888888999 9999999999988876 8887777777544 3 5566655
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0035 Score=69.33 Aligned_cols=282 Identities=9% Similarity=0.030 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 193 SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 193 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~ 272 (902)
+......-..-|-..+++.+..++++.+.+..+... ..+.+-+..+...|+-..-..+=..|.+. .+-...+|-++-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~-~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL-PCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc-chHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 444444445555566777777777766665433222 22333333444455555555555555544 2556778888888
Q ss_pred HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHH
Q psy767 273 GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTK 351 (902)
Q Consensus 273 a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~ 351 (902)
-|...|+..+|.+.|.+. .++.|. ...|-.
T Consensus 321 YYl~i~k~seARry~SKa-------------------------------------------------t~lD~~fgpaWl~ 351 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKA-------------------------------------------------TTLDPTFGPAWLA 351 (611)
T ss_pred HHHHhcCcHHHHHHHHHH-------------------------------------------------hhcCccccHHHHH
Confidence 888888899998888762 122222 245666
Q ss_pred HHHHHHHcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH---HHH-HHHcC
Q psy767 352 LMCGYAKHGDMDSIRRLLAQN--GSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH---IYH-LINKG 425 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~---i~~-l~~~g 425 (902)
+...|+-.|..|.|+..+..- -..+....+--+..-|.+.++.+.|.+.|.+... +-|+..-+ +.+ ....+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYE 428 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHh
Confidence 677777777778777766541 1112222234455667788899999999998866 66655433 222 23788
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCC-ccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC
Q psy767 426 QIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGV-GYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGE 504 (902)
Q Consensus 426 ~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~ 504 (902)
.+.+|..+|+...... +...+.. ...|...|+-..|-+++.+++|...++...... +.
T Consensus 429 ~y~~A~~~f~~~l~~i------------------k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~---~k 487 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVI------------------KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS---PK 487 (611)
T ss_pred hhHHHHHHHHHHHHHh------------------hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC---CC
Confidence 8999999998776321 0001111 233345678888999999999999999988764 33
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q psy767 505 QLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAH 552 (902)
Q Consensus 505 ~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 552 (902)
++.++.++...|...|. ++.|+..|++-.. +.||..+-..++..+
T Consensus 488 ~~~~~asig~iy~llgn-ld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGN-LDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred chhHHHHHHHHHHHhcC-hHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 56789999999999999 9999999998654 689998888887655
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0041 Score=70.04 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=93.7
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~ 215 (902)
....|.+|..+++.+..+.. -..-|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|+|+.|.+
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 34455555555555554432 11234555556666666666666665321 23444555666666666655
Q ss_pred HHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Q psy767 216 KIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV 295 (902)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~ 295 (902)
+-.+... .......|..-..-+...|++.+|+++|-.+. .|+. .|..|-+.|..++.+++..+-.....
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 5444332 22222333333333344566666655554333 3332 35556666666666655554322222
Q ss_pred CCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 296 NGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 296 ~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
..+...+..-+-..|+...++.-+ ....-|.+-+.+|...+-|++|.++-+.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~f------------------------lea~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHF------------------------LEAGDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHH------------------------HhhhhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 222333333333333333222211 1223466777888888888888887665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00063 Score=73.40 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+-..|...|+.++|...|++..+... .+...|+.+ -..+...|++++|...|+...+.+ +-+..+|
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~l------g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~ 135 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYL------GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAY 135 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 35577778888999999999999999887542 256788888 899999999999999999988765 4456788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
..+..++...|++++|++.|+...+. .|+..........+...++.++|...|........... .. ........
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~-~~---~~~~~~~l 209 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ-WG---WNIVEFYL 209 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc-cH---HHHHHHHc
Confidence 88889999999999999999999886 45543222223334556789999999966543322221 11 22333335
Q ss_pred CCHHHHHHHHHHHHHCC---C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 243 SDMASAEGILTMMSQAG---L---EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g---~---~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
|+...+ ..+..+.+.- . +....+|..+-..|.+.|++++|...|++.....
T Consensus 210 g~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 210 GKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred cCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 555444 3444444221 1 1234579999999999999999999999865443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0051 Score=65.41 Aligned_cols=275 Identities=9% Similarity=-0.018 Sum_probs=168.0
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q psy767 114 IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS 193 (902)
Q Consensus 114 ~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd 193 (902)
++-|......+ ...+...|+.+.|...|+.....+ +-+....-.-.-.+.+.|+.+...++...+.... .-.
T Consensus 228 lr~NvhLl~~l------ak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~t 299 (564)
T KOG1174|consen 228 LRCNEHLMMAL------GKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYT 299 (564)
T ss_pred CCccHHHHHHH------hhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcc
Confidence 44455566666 777777777777777777765543 1112222222223455667776666666665432 112
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
...|..-........+++.|+.+-++....+.. ....+..-..++...++.++|.--|+...... +-+..+|..|+..
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 333333344444556677777766665543322 23344455566677899999999998877643 5678999999999
Q ss_pred HHHcCCHHHHHHHHHHhccC-CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC-HHHHHH
Q psy767 274 YAKHGDMDSVRRLLAQSGSS-LVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS-AQTYTK 351 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~m~~~-~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~-~~t~~~ 351 (902)
|...|.+.+|...-+...+. +...-.-++.....-.-.+.--+.+..+. -....+.|+ ....+.
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~--------------ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFA--------------EKSLKINPIYTPAVNL 443 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHH--------------HhhhccCCccHHHHHH
Confidence 99999999988776653221 11111222222222222233333333322 122334554 356677
Q ss_pred HHHHHHHcCCHHHHHHHHHH-cCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQ-NGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 415 (902)
+...+...|..+++..++++ +...++..-.+.+.+.+...+.+.+|++.|....+ +.|...
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr---~dP~~~ 505 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR---QDPKSK 505 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCccch
Confidence 77888889999999999887 44444444477888888889999999999998877 778553
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.041 Score=62.42 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=67.7
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSK 129 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 129 (902)
+.+-.....+..|..+.+.+..+ +.-.--|..+...|+..|+++.|.++|.+. + .++-.
T Consensus 739 ieaai~akew~kai~ildniqdq-------k~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~da----- 797 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-------KTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDA----- 797 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-------ccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHH-----
Confidence 44445666777777777766651 111223666777788888888888887653 1 24555
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy767 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILT 183 (902)
Q Consensus 130 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~ 183 (902)
|.+|.+.|+|++|.++-++.... ..+...|-+-..-+-..|++.+|.++|-
T Consensus 798 -i~my~k~~kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 798 -IDMYGKAGKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred -HHHHhccccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 78888888888888776654322 2234555555555556666666665553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.011 Score=65.66 Aligned_cols=301 Identities=11% Similarity=0.045 Sum_probs=175.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCC-CCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHH---HHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTF-PISEG-VFNALIYGHSQANDMASAEGILTMMSQAGLEPSA-QTYTK---LMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~-~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~---ll~a~ 204 (902)
...+...|+.+.+.+.+....+..- .++.. ........+...|++++|.+++++..+. .|+. ..+.. .....
T Consensus 13 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~ 90 (355)
T cd05804 13 ALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLG 90 (355)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhc
Confidence 5556667888887666666543321 12221 1222334567789999999999998876 3443 34432 11112
Q ss_pred HHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 205 AKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
...+..+.+.+.+.. ..................+...|++++|...+++..+.. +.+...+..+-..|...|++++|.
T Consensus 91 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~ 168 (355)
T cd05804 91 DFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGI 168 (355)
T ss_pred ccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHH
Confidence 224555566666655 112222233344455566778999999999999999875 555677888899999999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC--HHHHHHHHHHHHHcCCH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS--AQTYTKLMCGYAKHGDM 362 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~--~~t~~~Li~~y~~~g~~ 362 (902)
..+.+.... ....|+ ...|..+...+...|++
T Consensus 169 ~~l~~~l~~----------------------------------------------~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 169 AFMESWRDT----------------------------------------------WDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHhhhhc----------------------------------------------cCCCcchhHHHHHHHHHHHHHCCCH
Confidence 999873221 111233 23566788889999999
Q ss_pred HHHHHHHHHcC-CCCCcccHH------HHHHHHHHcCChHHHHHH---HHHcccC-CC-CCC-CHHHHHHHHHHcCCHHH
Q psy767 363 DSIRRLLAQNG-SSLVNGDYL------DIIHALAVSGHGEYIDEI---ISKIQPG-VG-YSA-DAANHIYHLINKGQIDA 429 (902)
Q Consensus 363 ~~A~~~~~~m~-~~~~~~~~~------~li~~~~~~g~~~~A~~l---~~~m~~~-~g-~~p-d~~t~i~~l~~~g~~~~ 429 (902)
++|..+|++.. ..+....+. .++.-+...|....+.+. ...-... .+ +.+ .......++...|+.+.
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 99999999853 222222222 222333344433222222 2211110 11 111 01124566679999999
Q ss_pred HHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHH--HHhcCChHHHHHHHHHHHHc
Q psy767 430 AYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYH--LINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 430 A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~--~~k~g~~~~A~~l~~~m~~~ 498 (902)
|..+++.+.....-.+.. .. ........++.+ +...|+.++|.+.+......
T Consensus 283 a~~~L~~l~~~~~~~~~~-~~----------------~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 283 LDKLLAALKGRASSADDN-KQ----------------PARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHhccCch-hh----------------hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999887642110000 00 000011123333 66889999999988777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0028 Score=70.15 Aligned_cols=279 Identities=8% Similarity=-0.024 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
++..--.-..-|-..+++.+..++++...+.. +++...+..- |..+...|+..+-..+=..|.+. .|-...+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~------ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLH------IACLYELGKSNKLFLLSHKLVDL-YPSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHH------HHHHHHhcccchHHHHHHHHHHh-CCCCCcc
Confidence 44444444445556677777777777765531 2233333333 55666666655544444444443 2445567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
|-++---|--.|+..+|.+.|...... .|. ...|...-..|+-.|..++|+..+...-+--.. ....+-.+..-+.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYM 391 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHH
Confidence 777777676677777777777765543 222 346677777777777777766655433221000 0001111122233
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHH
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSA 320 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~ 320 (902)
..++.+.|.+.|.+..... +-|..+.+-+-......+.+.+|..+|+..... +
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------i-- 444 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------I-- 444 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------h--
Confidence 4677777777777766543 556666777776777777777787777752100 0
Q ss_pred HHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCcc-cHHHHHHHHHHcCChHHHH
Q psy767 321 IVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNG-DYLDIIHALAVSGHGEYID 398 (902)
Q Consensus 321 l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~-~~~~li~~~~~~g~~~~A~ 398 (902)
+..... ......+++.|..+|.+++.+++|+..|++ +...+... ++.++.-.|...|+++.|.
T Consensus 445 --------------k~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 445 --------------KSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred --------------hhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence 001111 113566889999999999999999999998 44444444 4788999999999999999
Q ss_pred HHHHHcccCCCCCCCHHH
Q psy767 399 EIISKIQPGVGYSADAAN 416 (902)
Q Consensus 399 ~l~~~m~~~~g~~pd~~t 416 (902)
+.|++..- +.||...
T Consensus 510 d~fhKaL~---l~p~n~~ 524 (611)
T KOG1173|consen 510 DHFHKALA---LKPDNIF 524 (611)
T ss_pred HHHHHHHh---cCCccHH
Confidence 99999977 8898753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00086 Score=72.35 Aligned_cols=210 Identities=12% Similarity=-0.006 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHH
Q psy767 41 LLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRV 119 (902)
Q Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ 119 (902)
...-.|......|.+.|+.+.|...|..... --+.+...|+.+...|...|++++|...|+...+. .| +..
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~ 133 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALA------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNY 133 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 3455566777788899999999999988887 22346788999999999999999999999999865 44 456
Q ss_pred HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 120 TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199 (902)
Q Consensus 120 t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 199 (902)
+|..+ ..++...|++++|.+.|+...+.+ |+..........+...++.++|...|.+..... .|+...+ .
T Consensus 134 a~~~l------g~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~ 203 (296)
T PRK11189 134 AYLNR------GIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N 203 (296)
T ss_pred HHHHH------HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H
Confidence 67777 788889999999999999988764 333222222233455678999999997765432 3333222 2
Q ss_pred HHHHHHHcCChhHHHHHHHhccc---CCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 200 LMCGYAKHGDMDSIKTKIPSLKP---QSEL---FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 200 ll~a~~~~g~~~~a~~l~~~~~~---~~~~---~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~ 272 (902)
......|++..+ +.+..+.. .... .....|..+...+...|++++|...|+...+.+ +||.+-+...+.
T Consensus 204 --~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~~ 278 (296)
T PRK11189 204 --IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYALL 278 (296)
T ss_pred --HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 223345665544 24433332 1111 123467777888889999999999999999765 456555554333
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0015 Score=74.44 Aligned_cols=249 Identities=12% Similarity=0.100 Sum_probs=147.2
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC-C--------CCCCHHH
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ-G--------IEPNRVT 120 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-g--------~~pd~~t 120 (902)
-+.|...|+.+.|-+-...+. +-..|..|.+.|.+.++.+-|.-.+-.|... | -.|+..
T Consensus 735 FSfyvtiG~MD~AfksI~~Ik-----------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~- 802 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQFIK-----------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED- 802 (1416)
T ss_pred eeEEEEeccHHHHHHHHHHHh-----------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch-
Confidence 356777888877655544444 4678999999999999999888777777542 1 122211
Q ss_pred HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q psy767 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL 200 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 200 (902)
=..+ .-.....|.+++|+.+|.+-+..+ .|=..|-..|.+++|+++-+.=-+..+ ..||..-
T Consensus 803 eakv------AvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 803 EAKV------AVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred hhHH------HHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 1111 223357799999999998876654 344567778999999998765333222 3466666
Q ss_pred HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q psy767 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280 (902)
Q Consensus 201 l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~ 280 (902)
..-+-..+|++.|++.|++..... +.+.-.+ ..+....++..+.+. |...|.---.-.-..|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~ha-------fev~rmL---~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHA-------FEVFRML---KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChH-------HHHHHHH---HhChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 677778889999999888765421 0000000 111112222222222 223333333344456777
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcC
Q psy767 281 DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360 (902)
Q Consensus 281 ~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g 360 (902)
+.|+.+|... -||.+++...|..|+.+.+..+-. +. -|......|.+.|-..|
T Consensus 929 daAl~~Y~~A------~D~fs~VrI~C~qGk~~kAa~iA~------------------es---gd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 929 DAALSFYSSA------KDYFSMVRIKCIQGKTDKAARIAE------------------ES---GDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHHHHh------hhhhhheeeEeeccCchHHHHHHH------------------hc---ccHHHHHHHHHHhhhhH
Confidence 7777777652 244555555555555444443311 12 24555556777777778
Q ss_pred CHHHHHHHHHH
Q psy767 361 DMDSIRRLLAQ 371 (902)
Q Consensus 361 ~~~~A~~~~~~ 371 (902)
++.+|..+|.+
T Consensus 982 ~v~~Av~FfTr 992 (1416)
T KOG3617|consen 982 DVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHH
Confidence 87777777765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.02 Score=63.67 Aligned_cols=199 Identities=11% Similarity=0.036 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
..|..+...+...|+++.+...+....+.. ..++......+ ....+...|++++|.++++...+.. |.+...+
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHV-----EALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 446666677777788888766666654432 12232211111 0334467789999999998877653 4455555
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH
Q psy767 163 NALIYGHSQ----ANDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 163 n~Li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
+. ...+.. .|....+.+.+.. .....|+. ..+..+...+...|++++|...++......+.. ...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHHHHHH
Confidence 53 222222 3455555555544 22223443 344455667888899999999998887765333 445666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 238 LILVSSDMASAEGILTMMSQAGL-EPSA--QTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
++...|++++|...++......- .|+. ..|..+...+...|++++|..+|++...
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77788999999999988776432 2333 3466788899999999999999998743
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.051 Score=60.83 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=72.9
Q ss_pred chHHHHHHHHHhcCHHHHHHHHHHhh--------hh-hchhhccchhhhhhhccCCchhHHHHHHHHHhhhhcCCCcchh
Q psy767 675 ITSAYVVHMLRQHNLKEAALLAKSFR--------AH-YAKVVVRPVLAVSYLRTQDLPSLVTVVRAVCENWEKGEEGEKE 745 (902)
Q Consensus 675 ~~~~~l~~~~~~g~~~~a~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
+....+.....+|+++.|++++..+. .. ..|..+. .+...+-+.++-++...++..-.+.|-+....+
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~-aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-- 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG-AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-- 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH-HHHHHHHhccCCccHHHHHHHHHHHHHHhcccc--
Confidence 33333444489999999999999433 21 2233322 233347788888889999999888888444322
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHH-HhhcCcchhhHHHHHHHHHHhccccccccchHHHHhhhhhh--hhHHHHHH
Q psy767 746 EEGEEKTAGQLIDMDRIFAGNVLLDIYK-ATRQDPNVVSHLEQLLNAFVEHAIPISAFSSDYIQNGLGSA--LTSDISKA 822 (902)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 822 (902)
+...+++-.... ..++. ..++--.+|++|.+.+ +...+.+..+..+. +-++....
T Consensus 455 ----------------~~l~~~~~~aa~f~lr~G--~~~ea~s~leel~k~n----~~d~~~l~~lV~a~~~~d~eka~~ 512 (652)
T KOG2376|consen 455 ----------------IALLSLMREAAEFKLRHG--NEEEASSLLEELVKFN----PNDTDLLVQLVTAYARLDPEKAES 512 (652)
T ss_pred ----------------hHHHhHHHHHhHHHHhcC--chHHHHHHHHHHHHhC----CchHHHHHHHHHHHHhcCHHHHHH
Confidence 344445555555 66665 3344556677776643 34445555544333 44444444
Q ss_pred Hhh
Q psy767 823 LGA 825 (902)
Q Consensus 823 l~~ 825 (902)
|.+
T Consensus 513 l~k 515 (652)
T KOG2376|consen 513 LSK 515 (652)
T ss_pred Hhh
Confidence 443
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.003 Score=64.16 Aligned_cols=323 Identities=12% Similarity=0.103 Sum_probs=197.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT-KLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~-~ll~a~~~~g~ 209 (902)
+..+.+..++.+|.+++..-.++. +.+....+.|-.+|-+..++..|-..|+++... .|...-|. .-...+-+.+.
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 777788899999999999887775 447788888999999999999999999999875 56665554 23455667788
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+..|+++...|..... ........-..+....+++..+..+.++....| +..+.+..-....+.|++++|++-|+.
T Consensus 94 ~ADALrV~~~~~D~~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred cHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 8889888888876421 122222233333445678888888888776432 344444455556788999999999987
Q ss_pred hccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 290 SGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLL 369 (902)
Q Consensus 290 m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~ 369 (902)
..+ -.|..| ...||.-+. ..+.|+++.|++..
T Consensus 170 Alq----------------------------------------------vsGyqp-llAYniALa-Hy~~~qyasALk~i 201 (459)
T KOG4340|consen 170 ALQ----------------------------------------------VSGYQP-LLAYNLALA-HYSSRQYASALKHI 201 (459)
T ss_pred HHh----------------------------------------------hcCCCc-hhHHHHHHH-HHhhhhHHHHHHHH
Confidence 432 222222 123333222 22334555555544
Q ss_pred HHc-----CCCC----------Ccc---------cHHHHHH-------HHHHcCChHHHHHHHHHcccCCCCCCCHHHHH
Q psy767 370 AQN-----GSSL----------VNG---------DYLDIIH-------ALAVSGHGEYIDEIISKIQPGVGYSADAANHI 418 (902)
Q Consensus 370 ~~m-----~~~~----------~~~---------~~~~li~-------~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i 418 (902)
.++ +..| ... +-+.++. .+.+.|+.+.|.+.+-.|.....-..|.+|+-
T Consensus 202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 432 1100 000 0122333 34577888999999999987555666667753
Q ss_pred H-HHH-HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHH
Q psy767 419 Y-HLI-NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLA 496 (902)
Q Consensus 419 ~-~l~-~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~ 496 (902)
+ ++. -.+++.++.+-+.-+... .|.++ - +..|++..|||..-++.|-+++.+-+
T Consensus 282 N~Al~n~~~~p~~g~~KLqFLL~~---nPfP~-E--------------------TFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 282 NQALMNMDARPTEGFEKLQFLLQQ---NPFPP-E--------------------TFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhcccCCccccHHHHHHHHhc---CCCCh-H--------------------HHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 3 222 345566665555555443 33211 1 23468888999999999988876544
Q ss_pred HccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 497 RSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 497 ~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
.....- -+...| -++.++.....++++|.+-++.+.
T Consensus 338 ~lTyk~-L~~Yly-~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 338 HLTYKF-LTPYLY-DLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred chhHHH-hhHHHH-HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 331000 011122 256666666666788877666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=55.25 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00051 Score=73.22 Aligned_cols=257 Identities=12% Similarity=0.031 Sum_probs=138.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
++-+.-.|++..+..-.+ .....-..+.....-+.+++...|+.+.++ .+..... .|.......+...+....+-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344455677777775554 222221223344556667777777766543 3333333 55655555544444443455
Q ss_pred hHHHHHHHhcccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSEL-FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+.+..-++........ .+.....+...++...|++++|+++++.- .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554443333 23333333334445578888887777542 4566666777888888888888888888
Q ss_pred hccCCCCCCHHHHHHHHHHcCC-cccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 290 SGSSLVNGDYLDIIHALAVSGH-GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRL 368 (902)
Q Consensus 290 m~~~~~~p~~~tl~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~ 368 (902)
|.+.........+..++..... .+....+..++. ++ .....++..+.+.+..++...|++++|..+
T Consensus 157 ~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~------------El-~~~~~~t~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 157 MQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE------------EL-SDKFGSTPKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH------------HH-HCCS--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH------------HH-HhccCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7665332223333333333211 122333333321 22 223456778888888888888888888888
Q ss_pred HHH-cCCCCCccc-HHHHHHHHHHcCCh-HHHHHHHHHcccCCCCCCCH
Q psy767 369 LAQ-NGSSLVNGD-YLDIIHALAVSGHG-EYIDEIISKIQPGVGYSADA 414 (902)
Q Consensus 369 ~~~-m~~~~~~~~-~~~li~~~~~~g~~-~~A~~l~~~m~~~~g~~pd~ 414 (902)
+.+ +...+..++ ...+|......|+. +.+.+.+.+++. ..|++
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~---~~p~h 269 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ---SNPNH 269 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH---HTTTS
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH---hCCCC
Confidence 877 444444444 33456666666766 667778888876 55544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.067 Score=61.74 Aligned_cols=412 Identities=11% Similarity=0.016 Sum_probs=240.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC-CC
Q psy767 78 DVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT-FP 156 (902)
Q Consensus 78 g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~ 156 (902)
.+..|...|..+--+....|+++.+.+.|++....-+. ....|..+ -..|..+|.-..|..+++.-.... -+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~------als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQL------ALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHH------HHHHHHhccchHHHHHHHhhcccccCC
Confidence 34468899999999999999999999999987653322 44566666 888888999889999987654332 23
Q ss_pred CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHcC-----------ChhHHHHHHHhc
Q psy767 157 ISEGVFNALIYGHSQ-ANDMASAEGILTMMSQA--GL--EPSAQTYTKLMCGYAKHG-----------DMDSIKTKIPSL 220 (902)
Q Consensus 157 p~~~~yn~Li~~~~~-~g~~~~A~~l~~~M~~~--g~--~pd~~ty~~ll~a~~~~g-----------~~~~a~~l~~~~ 220 (902)
++...+-..-..|.+ -|..++++++-...... |. ......|..+--+|...- ...++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 333444333344443 36677777666655541 11 122334444444443321 123567777777
Q ss_pred ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCCCH
Q psy767 221 KPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS-LVNGDY 299 (902)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~-~~~p~~ 299 (902)
.+.+.... .....+..-++-.++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |. ++
T Consensus 471 v~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~ 547 (799)
T KOG4162|consen 471 VQFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NH 547 (799)
T ss_pred HhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hh
Confidence 66554433 2333344445668999999999999999877889999999999999999999999988753221 11 00
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhhhhhccc----------ccchHH-hcCC-------CCCHHHHHHHHHHHHHcCC
Q psy767 300 LDIIHALAVSGHGEYIDEVSAIVCFVNICFHWL----------EGPMMS-QAGL-------EPSAQTYTKLMCGYAKHGD 361 (902)
Q Consensus 300 ~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~m~-~~g~-------~p~~~t~~~Li~~y~~~g~ 361 (902)
..+..-+--.-..++.+++....... ..-|. ++..+. +.|. .-...++..+..-....+.
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~--L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHK--LALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHH--HHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 00000000000011111111110000 00011 110111 1111 1122333333322221111
Q ss_pred ---HHHHHHHHHHcCCCCCccc--------HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH--HHHHH--HHcCC
Q psy767 362 ---MDSIRRLLAQNGSSLVNGD--------YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN--HIYHL--INKGQ 426 (902)
Q Consensus 362 ---~~~A~~~~~~m~~~~~~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~i~~l--~~~g~ 426 (902)
.+.. +......+...+ |......+...++.++|...+.+... +.|-... ++.+. ...|.
T Consensus 626 ~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 626 SAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred hcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHh
Confidence 1111 111111122221 55677778888899999888888765 5554443 34433 37788
Q ss_pred HHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHH--HHHHHHHccCCCCC
Q psy767 427 IDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYR--IVNTLARSANINGE 504 (902)
Q Consensus 427 ~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~--l~~~m~~~~~~~~~ 504 (902)
.++|.+.|..... ++|. |++....+-.++.+.|+-.-|.. ++..+...+. .
T Consensus 700 ~~EA~~af~~Al~---ldP~---------------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp---~ 752 (799)
T KOG4162|consen 700 LEEAKEAFLVALA---LDPD---------------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP---L 752 (799)
T ss_pred hHHHHHHHHHHHh---cCCC---------------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC---C
Confidence 8999888876654 3333 33344556666788887777766 8888887643 3
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 505 QLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 505 ~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
....|-.+...+-+.|+ .+.|.+.|.-..+
T Consensus 753 n~eaW~~LG~v~k~~Gd-~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGD-SKQAAECFQAALQ 782 (799)
T ss_pred CHHHHHHHHHHHHHccc-hHHHHHHHHHHHh
Confidence 45789899999999999 8999999887544
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.024 Score=60.43 Aligned_cols=247 Identities=11% Similarity=0.029 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCChhHHHH
Q psy767 138 GNIEGATKILEFMRDK-TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT-YTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~-~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-y~~ll~a~~~~g~~~~a~~ 215 (902)
++-..|...+-..... -++-|+.....+.+.+...|+.++|+..|+..+-. .|+..+ ...-.-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 3444444444333322 24445566677777777777777777777766554 233321 1111112345566665555
Q ss_pred HHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Q psy767 216 KIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV 295 (902)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~ 295 (902)
+...+..... .....+.+-...+....+++.|+.+-+..++.. +.+...|-.--..+...|++++|.--|+..
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A----- 360 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA----- 360 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH-----
Confidence 5444433211 111222222333334555566665555555332 222222322223455556666666666542
Q ss_pred CCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-cC
Q psy767 296 NGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ-NG 373 (902)
Q Consensus 296 ~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~ 373 (902)
..+.| +..+|.-|+..|...|.+.+|..+-+. |.
T Consensus 361 --------------------------------------------q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 361 --------------------------------------------QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred --------------------------------------------HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 12333 567888888888888888887766554 22
Q ss_pred CCCCcccHHHHH--HHHHHcCC-hHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 374 SSLVNGDYLDII--HALAVSGH-GEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 374 ~~~~~~~~~~li--~~~~~~g~-~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
..+...---+++ ..|.-.-. -++|..++++-.+ +.|+-.. ....+...|+..++..+++.....
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 222221111222 22222212 2677777777665 5565432 222334666677777766666554
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0075 Score=69.17 Aligned_cols=401 Identities=11% Similarity=0.009 Sum_probs=242.1
Q ss_pred HHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 42 LVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
...+|..+.-....+|++..+.+.|+.... +.--....|+.+-..|...|.-..|..+++.-......|+..+-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~------~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALP------FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 455666677777778888888888888775 33335677999999999999999999999886644333544443
Q ss_pred HHHHHhHHHHH-HHH-HcCCHHHHHHHHHHhhh-----CCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHH
Q psy767 122 QQLISNSKLIS-KYC-QDGNIEGATKILEFMRD-----KTFPISEGVFNALIYGHSQA-----------NDMASAEGILT 183 (902)
Q Consensus 122 ~~ll~~~~li~-~~~-~~g~~~~A~~l~~~m~~-----~~~~p~~~~yn~Li~~~~~~-----------g~~~~A~~l~~ 183 (902)
-.+ +. .|. +-+.+++++..-..... .+ ......|-.+--+|... ....++++.++
T Consensus 396 ~Lm------asklc~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 396 LLM------ASKLCIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred HHH------HHHHHHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 233 22 232 23455554444333322 11 12234555555555432 23467888888
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCC
Q psy767 184 MMSQAGL-EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ-AGLE 261 (902)
Q Consensus 184 ~M~~~g~-~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~-~g~~ 261 (902)
+..+.+. .|+..-|. ---|+..+++..|.+...+...-+...+...+..+..++...+++.+|+.+.+.... .|.
T Consensus 469 ~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred HHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 8877653 34433333 345677889999999999998887778888899999999999999999999886654 332
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc--------------------------CCCCCC----HHHHHHHHHHcCC
Q psy767 262 PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS--------------------------SLVNGD----YLDIIHALAVSGH 311 (902)
Q Consensus 262 pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~--------------------------~~~~p~----~~tl~~~l~~~~~ 311 (902)
|...-..=|..-..-++.++|+.....+.. ....|. -...+..+.+ .+
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~ 623 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQ 623 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hh
Confidence 111111111111223444444443333211 000110 1111111111 10
Q ss_pred cccHHHHHHHHHHhhhhhcccccchHHhcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc-H
Q psy767 312 GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS--------AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-Y 381 (902)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~--------~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~ 381 (902)
...... + ..+....+.|. ...|....+.+.+.++.++|...+.+. +..+..+. |
T Consensus 624 ~~~~~s---------------e-~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~ 687 (799)
T KOG4162|consen 624 LKSAGS---------------E-LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVY 687 (799)
T ss_pred hhhccc---------------c-cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHH
Confidence 000000 0 00122222222 235666677888999999998665553 22222222 5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHH----HHHHcCCHHHHHH--HHHHHHhccCCCCCcccchhhHH
Q psy767 382 LDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIY----HLINKGQIDAAYR--IVNTLARSANINGEQLPVGGFLV 455 (902)
Q Consensus 382 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~----~l~~~g~~~~A~~--~~~~m~~~~~i~~~~~~~~~~~~ 455 (902)
......+...|.+++|.+.|..... +.|+++-.+. .+.+.|+...|.. ++..+.+. +|..+.
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~---dp~n~e------ 755 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL---DPLNHE------ 755 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---CCCCHH------
Confidence 5555667788999999999999987 8888875443 4457887777766 88877764 333321
Q ss_pred HhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q psy767 456 RHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANING 503 (902)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~ 503 (902)
..|.+-..+-+.|+.+.|-+.|..........|
T Consensus 756 ---------------aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 756 ---------------AWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred ---------------HHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 256677778899999999999998877654443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0048 Score=60.98 Aligned_cols=197 Identities=16% Similarity=0.009 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
...-.+--+|.+.|++..|..-+++.++... -+..+|..+ ...|-+.|..+.|.+-|+...... +-+-.+.|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~------A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLN 107 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVR------AHYYQKLGENDLADESYRKALSLA-PNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHH------HHHHHHcCChhhHHHHHHHHHhcC-CCccchhh
Confidence 3466778889999999999999999987632 245677777 889999999999999999987664 44557788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
..-..+|..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|.+........+. ....+.......
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-~~l~~a~~~~~~ 186 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-ALLELARLHYKA 186 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-HHHHHHHHHHhc
Confidence 888889999999999999999987632222 347888888888899999999999888776544332 333445555667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
|++-.|...++.....+. ++..+.-..|..--+.|+.+.+-+.=.++
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 888888888888877774 77777777777777888877776655544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=53.62 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEP 192 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p 192 (902)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999987
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00031 Score=74.88 Aligned_cols=250 Identities=16% Similarity=0.076 Sum_probs=146.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHH
Q psy767 167 YGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMA 246 (902)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 246 (902)
+-+.-.|.+..++.-.+ .....-..+..+...+.+++...|+.+.+. .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445678888776555 222211223445667788999999877544 3443333 344444444444443334445
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHh
Q psy767 247 SAEGILTMMSQAGLEPSAQTYTKLM-CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325 (902)
Q Consensus 247 ~A~~l~~~m~~~g~~pd~~ty~~LI-~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~ 325 (902)
.+..-+++.......++..++..+. ..|...|++++|++++.+
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~------------------------------------ 127 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK------------------------------------ 127 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT------------------------------------
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc------------------------------------
Confidence 5544444444333332333333322 345556778877776653
Q ss_pred hhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHH----HcCChHHHHHHH
Q psy767 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALA----VSGHGEYIDEII 401 (902)
Q Consensus 326 ~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~----~~g~~~~A~~l~ 401 (902)
+ -+.......+..|.+.++++.|.+.++.|...........+..++. ..+.+.+|.-+|
T Consensus 128 ---------------~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 128 ---------------G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp ---------------T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred ---------------c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 1 3456667788999999999999999999977655555544555443 234689999999
Q ss_pred HHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHH
Q psy767 402 SKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLI 480 (902)
Q Consensus 402 ~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~ 480 (902)
+++....+-+|...+ ...+....|++++|.+++...... .|..++ ...|++....
T Consensus 191 ~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---~~~~~d---------------------~LaNliv~~~ 246 (290)
T PF04733_consen 191 EELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---DPNDPD---------------------TLANLIVCSL 246 (290)
T ss_dssp HHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----CCHHH---------------------HHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---ccCCHH---------------------HHHHHHHHHH
Confidence 999875444333333 233345899999999999886543 333221 2557777777
Q ss_pred hcCCh-HHHHHHHHHHHHc
Q psy767 481 NKGQI-DAAYRIVNTLARS 498 (902)
Q Consensus 481 k~g~~-~~A~~l~~~m~~~ 498 (902)
..|+. +.+.+++.++...
T Consensus 247 ~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHH
T ss_pred HhCCChhHHHHHHHHHHHh
Confidence 77877 6777888887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.099 Score=57.97 Aligned_cols=400 Identities=11% Similarity=0.118 Sum_probs=218.3
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
+-|+.+|+.||.-+... .++++.+.+++|. +.-|+ ...|..- |.+-.+..+++.++++|.+-..+-+ +
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~--~~FP~s~r~W~~y------i~~El~skdfe~VEkLF~RCLvkvL--n 85 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLV--NVFPSSPRAWKLY------IERELASKDFESVEKLFSRCLVKVL--N 85 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHh--ccCCCCcHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHh--h
Confidence 45899999999988777 8999999999998 44554 4456666 8888999999999999998766533 4
Q ss_pred HHHHHHHHHHHHh-CCCHH----HHHHHHHH-HHHCCCCCCH-HHHHHHH---HH------HHHcCChhHHHHHHHhccc
Q psy767 159 EGVFNALIYGHSQ-ANDMA----SAEGILTM-MSQAGLEPSA-QTYTKLM---CG------YAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 159 ~~~yn~Li~~~~~-~g~~~----~A~~l~~~-M~~~g~~pd~-~ty~~ll---~a------~~~~g~~~~a~~l~~~~~~ 222 (902)
...|..-|+---+ .|+.. ...+-|+- |.+.|+.+-. ..|+.-+ .. |....+++...+++.++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 5777777764333 23322 22233332 3344544432 2344333 32 3444455667777877776
Q ss_pred CCCccchhhHHH-------HHHHHH------hcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHH
Q psy767 223 QSELFLCFSFQL-------TNLLIL------VSSDMASAEGILTMMSQ--AGLEPSAQT---------------YTKLMC 272 (902)
Q Consensus 223 ~~~~~~~~~~~~-------~~~~~~------~~g~~~~A~~l~~~m~~--~g~~pd~~t---------------y~~LI~ 272 (902)
.........+.- ++.+.+ ....+-.|.++++++.. +|+..+..+ |-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 544432222211 111111 14456677777777653 343222222 222221
Q ss_pred HHHHcCCHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcC-CcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHH
Q psy767 273 GYAKHGDMDSVRRLLAQSGSSLVNGDY----LDIIHALAVSG-HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQ 347 (902)
Q Consensus 273 a~~~~g~~~~A~~lf~~m~~~~~~p~~----~tl~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~ 347 (902)
-=-.++- ...+-.+.. .++-.++...+ ..+-+..+...+.-+. +...+.|-.|+..
T Consensus 246 wEksNpL-----------~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s--------~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 246 WEKSNPL-----------RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS--------DLLTEKGDVPDAK 306 (656)
T ss_pred HHhcCCc-----------ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh--------HHHHHhcccccch
Confidence 1111100 000000000 00000110001 0111111100000000 0112222222211
Q ss_pred --------HHHHHHHHHHHc------------------CCHHHHHHHHHHc-CCCCCccc--HHHHHHHHHHcCChHHHH
Q psy767 348 --------TYTKLMCGYAKH------------------GDMDSIRRLLAQN-GSSLVNGD--YLDIIHALAVSGHGEYID 398 (902)
Q Consensus 348 --------t~~~Li~~y~~~------------------g~~~~A~~~~~~m-~~~~~~~~--~~~li~~~~~~g~~~~A~ 398 (902)
+|...|.+..+. +..+....++++. ......++ |-.+++...+..-...|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 122222221111 1133334444442 22223333 777888888888888999
Q ss_pred HHHHHcccCCCCCCCHHHH---HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHH
Q psy767 399 EIISKIQPGVGYSADAANH---IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANH 475 (902)
Q Consensus 399 ~l~~~m~~~~g~~pd~~t~---i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 475 (902)
.+|.+..+ .+..+.++-+ +.-|.-.++..-|.++|+.=.++++-.|. .....
T Consensus 387 ~iF~kaR~-~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~------------------------yv~~Y 441 (656)
T KOG1914|consen 387 KIFKKARE-DKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPE------------------------YVLKY 441 (656)
T ss_pred HHHHHHhh-ccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChH------------------------HHHHH
Confidence 99999988 6677744322 22334678888899999888887766554 23345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 476 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 476 i~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
++-+...++-..|..+|+.......++..+...|+.+|..=..-|+ +.-++++-+++..
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd-L~si~~lekR~~~ 500 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD-LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc-HHHHHHHHHHHHH
Confidence 5567788888899999999888755554566788888888888888 8888888887643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.032 Score=70.66 Aligned_cols=338 Identities=10% Similarity=-0.025 Sum_probs=192.9
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHH
Q psy767 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG--L----EPSAQ--TYTKLMCGYA 205 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g--~----~pd~~--ty~~ll~a~~ 205 (902)
....|+++.+...++.+.......+..........+...|++++|..++......- . .|... ....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34567777777777665322111112223344455567788888888888765431 0 11111 1122233455
Q ss_pred HcCChhHHHHHHHhcccCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHH
Q psy767 206 KHGDMDSIKTKIPSLKPQSELFLC----FSFQLTNLLILVSSDMASAEGILTMMSQAGL---EP--SAQTYTKLMCGYAK 276 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~---~p--d~~ty~~LI~a~~~ 276 (902)
..|++++|...++.........+. .....+...+...|+++.|...+.+.....- .+ -..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888776542111111 2233344445568888888888877764211 11 12344555667788
Q ss_pred cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCC--C-CHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLE--P-SAQTYTKLM 353 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~--p-~~~t~~~Li 353 (902)
.|++++|...+++.... ....+.. + ....+..+.
T Consensus 544 ~G~~~~A~~~~~~al~~-------------------------------------------~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 544 QGFLQAAYETQEKAFQL-------------------------------------------IEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred CCCHHHHHHHHHHHHHH-------------------------------------------HHHhccccccHHHHHHHHHH
Confidence 88888888888763210 1112211 1 233455566
Q ss_pred HHHHHcCCHHHHHHHHHHcCC----CCC---cccHHHHHHHHHHcCChHHHHHHHHHcccC---CCCCCCHHH-----HH
Q psy767 354 CGYAKHGDMDSIRRLLAQNGS----SLV---NGDYLDIIHALAVSGHGEYIDEIISKIQPG---VGYSADAAN-----HI 418 (902)
Q Consensus 354 ~~y~~~g~~~~A~~~~~~m~~----~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~pd~~t-----~i 418 (902)
..+...|++++|...+.+... .+. ...+..+...+...|+++.|.+.+...... .+....... .+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 677788999999988876311 111 111444666778899999999888876431 111111111 11
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc--chHHHHHHHHhcCChHHHHHHHHHHH
Q psy767 419 YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA--DAANHIYHLINKGQIDAAYRIVNTLA 496 (902)
Q Consensus 419 ~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~li~~~~k~g~~~~A~~l~~~m~ 496 (902)
..+...|+.+.|..++...... .+.. ++.. ....+...+...|+.++|...+....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~---~~~~-------------------~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKP---EFAN-------------------NHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCC---CCcc-------------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2334678999998887664331 0000 0000 01224444788999999999999876
Q ss_pred HccCCCC---CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q psy767 497 RSANING---EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDEN 537 (902)
Q Consensus 497 ~~~~~~~---~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g 537 (902)
......+ ....+...+...+.+.|+ .++|...+.+..+..
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~-~~~A~~~L~~Al~la 761 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGR-KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 6431111 122345566777889999 899999999977653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.032 Score=70.64 Aligned_cols=317 Identities=15% Similarity=0.066 Sum_probs=165.9
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCC----CCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----H
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIE----PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS----E 159 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~----pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~ 159 (902)
.....+...|++++|..++......--. .+......+ ...+-..+...|+++.|...++.....--..+ .
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF--NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 3344456678889988888876542110 011111011 00113445678899999888887654211111 1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGL---EPS--AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL 234 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~---~pd--~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~ 234 (902)
..++.+...+...|++++|...+++.....- .+. ..++..+...+...|++++|...+++...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~------------ 559 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ------------ 559 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence 3445566667778899988888887754211 111 22344455566777888877776654322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLE--P-SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGH 311 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~--p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~ 311 (902)
+... .|.. + ....+..+...+...|++++|...+.+....
T Consensus 560 ----------------~~~~---~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~------------------ 602 (903)
T PRK04841 560 ----------------LIEE---QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV------------------ 602 (903)
T ss_pred ----------------HHHH---hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh------------------
Confidence 1111 1111 1 2233444455566667777777777653211
Q ss_pred cccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCcccHHH----
Q psy767 312 GEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN----GSSLVNGDYLD---- 383 (902)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~~~~~~~---- 383 (902)
....+.......+..+...+...|+.+.|.+.+... ...+....+..
T Consensus 603 -------------------------~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 603 -------------------------LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred -------------------------hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 001110111233444555667777877777776653 11111111111
Q ss_pred -HHHHHHHcCChHHHHHHHHHcccCCCCCCCHH------HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHH
Q psy767 384 -IIHALAVSGHGEYIDEIISKIQPGVGYSADAA------NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVR 456 (902)
Q Consensus 384 -li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~------t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~ 456 (902)
.+..+...|+.+.|.+.+..... ........ ....++...|+.++|...+..........+...... .
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a----~ 732 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN----R 732 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH----H
Confidence 12334456777888888766554 11111111 123345678888888888887765321111100000 0
Q ss_pred hhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 457 HMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
....+-..+.+.|+.++|...+.+.....
T Consensus 733 --------------~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 --------------NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 01123334778999999999999888764
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.18 Score=59.74 Aligned_cols=256 Identities=12% Similarity=0.093 Sum_probs=115.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
..+-.+.|.+.+|.+-|=.. + |...|.-+|+...+.|.+++-.+++...++..-+|... +.||-+|++.+++
T Consensus 1111 akAQL~~~~v~dAieSyika---d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1111 AKAQLQGGLVKDAIESYIKA---D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHhcCchHHHHHHHHhc---C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchH
Confidence 55555555555554433211 1 23455555555555555555555554444443333332 2445555555555
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
.+...++.. |+......+..-+...+.++.|.-+|... .-|..|...+...|++..|..--++.
T Consensus 1183 ~elE~fi~g-------pN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1183 TELEEFIAG-------PNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHhcC-------CCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 544333221 11122222222233334444444444322 23555556666666666665544431
Q ss_pred ccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy767 291 GSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLA 370 (902)
Q Consensus 291 ~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~ 370 (902)
....+|..+ ..+|-+.+....+ + |-...+-....-..-|+.-|-..|-+++-+.+++
T Consensus 1247 ---ns~ktWK~V---cfaCvd~~EFrlA-------Q----------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1247 ---NSTKTWKEV---CFACVDKEEFRLA-------Q----------ICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred ---cchhHHHHH---HHHHhchhhhhHH-------H----------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 111122222 2222221111110 1 1112222334445567888888888888888887
Q ss_pred H-cCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy767 371 Q-NGSSLVN-GDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLA 438 (902)
Q Consensus 371 ~-m~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~ 438 (902)
. ++...-. ..|+.+.-.|++- ++++..+-++..-. +-+...++.++-....|.+..-++.+..
T Consensus 1304 a~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws----RvNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1304 AGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS----RVNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5 2221111 1155555555543 34444444443322 1223345666666666666665555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.75 E-value=4e-05 Score=52.82 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR 118 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 118 (902)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.7e-05 Score=52.20 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP 116 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 116 (902)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999988
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.002 Score=73.29 Aligned_cols=211 Identities=15% Similarity=0.126 Sum_probs=132.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
..+...+.+.|-...|..+|++. ..|--+|-+|+..|+..+|..+..+-.+. .||..-|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 44588888999999999999886 56788999999999999999998888874 78898999888888877
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
.-+++|.++++..-.+ +-..+.......+++.++.+.|+.-.+.. +--..+|-.+-.++.+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7788888877765432 11111111222456666666665444332 333455555555556666666666655
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q psy767 288 AQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIR 366 (902)
Q Consensus 288 ~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~ 366 (902)
..- -...| +...||.+-.+|.+.|+-.+|.
T Consensus 543 ~rc-------------------------------------------------vtL~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 543 HRC-------------------------------------------------VTLEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred HHH-------------------------------------------------hhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 431 11233 3456666666666666666666
Q ss_pred HHHHHc-CCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 367 RLLAQN-GSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 367 ~~~~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
..+++- +..-.... |...+....+-|.+++|.+.+.++..
T Consensus 574 ~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 RKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 666652 22211111 44444555566666666666665543
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0023 Score=77.28 Aligned_cols=215 Identities=11% Similarity=0.114 Sum_probs=150.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhc
Q psy767 261 EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340 (902)
Q Consensus 261 ~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~ 340 (902)
+-....|-.-|.-..+.++.++|.+++++....-.. .+..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~---------------REee------------------------- 1494 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINF---------------REEE------------------------- 1494 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc---------------chhH-------------------------
Confidence 445667888888888999999999999874322100 0000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HH
Q psy767 341 GLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HI 418 (902)
Q Consensus 341 g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i 418 (902)
--...|.++++.--..|.-+...++|++.....+..+ |..|...|.+.+..++|.++++.|.++.+-.+..+. +.
T Consensus 1495 ---EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1495 ---EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYA 1571 (1710)
T ss_pred ---HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence 0123566666666666677777788877544434433 778889999999999999999999887775566665 56
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy767 419 YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 419 ~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
..+.++...+.|..++++..+.. |.+.|+ -...-....-.+.|+.+.+..+|+.....
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~l---Pk~eHv-------------------~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSL---PKQEHV-------------------EFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhc---chhhhH-------------------HHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 66778888888888888877642 111111 01111333345889999999999988765
Q ss_pred cCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhh
Q psy767 499 ANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFN 544 (902)
Q Consensus 499 ~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t 544 (902)
. |...+.|+..|+.-.++|. .+.+..+|++..+.++.|-..-
T Consensus 1630 y---PKRtDlW~VYid~eik~~~-~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1630 Y---PKRTDLWSVYIDMEIKHGD-IKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred C---ccchhHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCChhHhH
Confidence 3 2345789999999999999 8999999999999988876433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.006 Score=63.39 Aligned_cols=189 Identities=14% Similarity=0.005 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhc
Q psy767 261 EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340 (902)
Q Consensus 261 ~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~ 340 (902)
......+-.+...|.+.|++++|...|++... ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------------------------------~~ 63 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALES----------------------------------------------RY 63 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------------------------hC
Confidence 44566777788888999999999999987322 11
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc----HHHHHHHHHHc--------CChHHHHHHHHHccc
Q psy767 341 GLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD----YLDIIHALAVS--------GHGEYIDEIISKIQP 406 (902)
Q Consensus 341 g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~----~~~li~~~~~~--------g~~~~A~~l~~~m~~ 406 (902)
.-.|. ...+..+..+|...|++++|...+++. ...|..+. +..+..++... |+++.|.+.|+.+..
T Consensus 64 p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 64 PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 11121 245677778888889999999998874 34444443 33344444433 566778888887766
Q ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChH
Q psy767 407 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQID 486 (902)
Q Consensus 407 ~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~ 486 (902)
..|+......++...+..... ... ..+.+-..+.+.|+++
T Consensus 144 ---~~p~~~~~~~a~~~~~~~~~~------~~~-------------------------------~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 144 ---RYPNSEYAPDAKKRMDYLRNR------LAG-------------------------------KELYVARFYLKRGAYV 183 (235)
T ss_pred ---HCCCChhHHHHHHHHHHHHHH------HHH-------------------------------HHHHHHHHHHHcCChH
Confidence 455432211111111111000 000 0123444588999999
Q ss_pred HHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 487 AAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 487 ~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
+|...+..........+.....+..+...+...|+ .++|..+++.+...
T Consensus 184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 99999999887644333345678899999999999 99999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.1e-05 Score=49.73 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGL 190 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~ 190 (902)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0042 Score=69.01 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=60.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCC
Q psy767 337 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSA 412 (902)
Q Consensus 337 m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 412 (902)
....+..+|..++..|--.|--.|++++|.+.|+. +...|.... ||-|...++...+.++|++.|++..+ ++|
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP 495 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQP 495 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCC
Confidence 44556567778888888888899999999999987 566655554 99999999999999999999999988 777
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0099 Score=61.76 Aligned_cols=170 Identities=14% Similarity=0.072 Sum_probs=121.8
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE---GVFNALIYGHSQANDMASAEGILTMMSQAGLE-P 192 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~-p 192 (902)
....+..+ ...+.+.|+++.|...|+.+.... +.+. ..+..+..++.+.|++++|...|+++.+.... |
T Consensus 32 ~~~~~~~~------g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 32 PAEELYEE------AKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34445555 778889999999999999987653 2222 46778889999999999999999999876321 1
Q ss_pred CH-HHHHHHHHHHHHc--------CChhHHHHHHHhcccCCCccchh--hH--------------HHHHHHHHhcCCHHH
Q psy767 193 SA-QTYTKLMCGYAKH--------GDMDSIKTKIPSLKPQSELFLCF--SF--------------QLTNLLILVSSDMAS 247 (902)
Q Consensus 193 d~-~ty~~ll~a~~~~--------g~~~~a~~l~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~g~~~~ 247 (902)
.. .++..+-.++... |+.++|.+.++.+....+..... .. ..+...+...|+++.
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 11 1344444455443 67888999999887654432211 11 123344566899999
Q ss_pred HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 248 AEGILTMMSQAG--LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 248 A~~l~~~m~~~g--~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
|...+....... -+.....+..+..+|...|++++|...++.+...
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999988753 1234678999999999999999999999887554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.026 Score=68.76 Aligned_cols=209 Identities=10% Similarity=0.026 Sum_probs=165.1
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC-CCCCCH---HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ-GIEPNR---VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTF 155 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~---~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 155 (902)
|-....|-..|....+.++.+.|.+++++.+.. +++-.. -.|.++ ++.-...|.-+...++|++..+..-
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~------lNlEn~yG~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAY------LNLENAYGTEESLKKVFERACQYCD 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHH------HhHHHhhCcHHHHHHHHHHHHHhcc
Confidence 334567999999999999999999999998753 222111 245566 7777788888999999999987652
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc-chhhHHH
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF-LCFSFQL 234 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~-~~~~~~~ 234 (902)
.-..|..|...|.+.+.+++|-++|+.|.+.= .-....|...+..+.+..+-+.|..++.+..+.-+.- -.....-
T Consensus 1529 --~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1529 --AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred --hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 13568999999999999999999999998762 2466789999999999999999999998877643331 1222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD 298 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~ 298 (902)
...+-.++|+.+.+..+|+.....- +.-.-.|+..|+.=.++|+.+.+..+|++....+..|-
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 4444566999999999999988763 55678999999999999999999999999988877664
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.39 Score=57.18 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH--HHHH
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSL-VNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN--HIYH 420 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~i~~ 420 (902)
|..+|++|--. ...|++.-|...|-+- ...| ....|..+...+.+..+++-|.+.|...+. +.|+... +=.+
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEA 891 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHH
Confidence 34455555443 5556666666665441 2222 222377777777888899999999999877 8887664 2223
Q ss_pred HH--HcCCHHHHHHHHHHH
Q psy767 421 LI--NKGQIDAAYRIVNTL 437 (902)
Q Consensus 421 l~--~~g~~~~A~~~~~~m 437 (902)
++ ..|+.-++..+|..-
T Consensus 892 li~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhh
Confidence 33 678888888887763
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.6 Score=55.12 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhhhhchhh--ccchhhhhhhccCCchhHHHHHHHHHhhhh
Q psy767 660 EVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAHYAKVV--VRPVLAVSYLRTQDLPSLVTVVRAVCENWE 737 (902)
Q Consensus 660 ~~~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
+.++-|.-..+..++.-+.+...+.-.|++.-+....+.+..+++... .-.+++.+|+... | +.|.-|.++.+|+.
T Consensus 494 ~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~-y-SkI~em~~fr~rL~ 571 (932)
T KOG2053|consen 494 ELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGA-Y-SKIPEMLAFRDRLM 571 (932)
T ss_pred HHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCc-h-hhhHHHHHHHHHHH
Confidence 466666667777788778888888888999999999888888766443 3334666665543 2 22333445555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.15 Score=56.11 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q psy767 138 GNIEGATKILEFMRDKT--FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~~--~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~ 215 (902)
.++.++...-+.|+..+ -.|+...+...+.+.........+-.++.+-.+. .-...-|..-+ .+-..|+.++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHH
Confidence 45556666666665433 2345556666666554443333333333222221 11222333322 3445566666666
Q ss_pred HHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 216 KIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
.++.+.... +.+.........++...++..+|.+.++.+... .|+ ...+-.+-.+|.+.|++.+|..+++...
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~--- 401 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYL--- 401 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHh---
Confidence 666654432 234444445555555666666666666666654 344 4445555566666666666666665421
Q ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q psy767 295 VNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS 374 (902)
Q Consensus 295 ~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~ 374 (902)
...+-|...|..|-.+|...|+..+|..-..
T Consensus 402 ---------------------------------------------~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---- 432 (484)
T COG4783 402 ---------------------------------------------FNDPEDPNGWDLLAQAYAELGNRAEALLARA---- 432 (484)
T ss_pred ---------------------------------------------hcCCCCchHHHHHHHHHHHhCchHHHHHHHH----
Confidence 1223356667777777777777666655433
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 375 SLVNGDYLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
.+|.-.|+++.|.+.+....+
T Consensus 433 -----------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 433 -----------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred -----------HHHHhCCCHHHHHHHHHHHHH
Confidence 355666777777776666654
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.01 Score=60.49 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCC-C-CcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCH--HHH--HHHH
Q psy767 348 TYTKLMCGYAKHGDMDSIRRLLAQNGSS-L-VNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADA--ANH--IYHL 421 (902)
Q Consensus 348 t~~~Li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~--i~~l 421 (902)
-+++.+....+..++++|++++...... | .....+.+...|....++..|-+.++++-. ..|.. +.+ ...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHH
Confidence 3556666677888888888888764333 2 222367777888888888888888888866 55543 333 4456
Q ss_pred HHcCCHHHHHHHHHHHHhccCCC-------------CCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHH
Q psy767 422 INKGQIDAAYRIVNTLARSANIN-------------GEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAA 488 (902)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~i~-------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A 488 (902)
.+.+.+.+|+.+...|...-.+. .....-.+-+++ ..|+-+......+.--.+.+.|++++|
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve-----Qlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE-----QLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH-----hccCCCccchhccchheeeccccHHHH
Confidence 68888888888887775421000 000000011111 112211111111111115688999999
Q ss_pred HHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhh
Q psy767 489 YRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYC 568 (902)
Q Consensus 489 ~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~ 568 (902)
.+-|+.....+.-. +...||..+.+|.+ |. .+.|+++..++.++|++--+. +++-+..-+. ....+..
T Consensus 164 vqkFqaAlqvsGyq--pllAYniALaHy~~-~q-yasALk~iSEIieRG~r~HPE-lgIGm~tegi---DvrsvgN---- 231 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ--PLLAYNLALAHYSS-RQ-YASALKHISEIIERGIRQHPE-LGIGMTTEGI---DVRSVGN---- 231 (459)
T ss_pred HHHHHHHHhhcCCC--chhHHHHHHHHHhh-hh-HHHHHHHHHHHHHhhhhcCCc-cCccceeccC---chhcccc----
Confidence 99998888765444 45688888877765 44 688999999998888753322 2111100000 0000000
Q ss_pred hhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHHHhhhHHHHHHHHHHHHHHhCCCCChHHHHHhhh
Q psy767 569 VNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQVAEAEFGVGSNTETLRDYVL 648 (902)
Q Consensus 569 ~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li~~~~~~~al~ll~~m~~~~g~~P~~~t~~~lv~ 648 (902)
. ..|...+ ....+.+. +..-.+-+..+.|.+-+..|.-+..-+-|..|.-++..
T Consensus 232 -------t------~~lh~Sa--------l~eAfNLK-----aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 232 -------T------LVLHQSA--------LVEAFNLK-----AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred -------h------HHHHHHH--------HHHHhhhh-----hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 0 1111221 00000011 11111233477788888888433334456778888877
Q ss_pred ccCCCCCCChHHHHHHHHhcCCCCccchHHHHHHHHHhcCHHHHHHHHHHhhh
Q psy767 649 PVLSPPNQVSGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRA 701 (902)
Q Consensus 649 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 701 (902)
.......-..-+-++.+-....-|.....+++.-+|+..-++-|.+++...+.
T Consensus 286 ~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 286 MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 77664222244466666666555666778888888999999999999987654
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=64.73 Aligned_cols=186 Identities=11% Similarity=0.031 Sum_probs=139.3
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
+.++|+..+|.-+|+...+.... +...|..| -...+..++-..|+..+.+..+.+ +-|....-+|.-.|...
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~L------G~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKL------GITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHh------hhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhh
Confidence 56789999999999988876432 56677777 667777778888888888887776 55678888888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHHcCChhHHHHHHHhccc-CCCccchhhHHHHHHHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLM-----------CGYAKHGDMDSIKTKIPSLKP-QSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll-----------~a~~~~g~~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (902)
|.-..|++.|+.-..... .|..+. +.+.....+....++|-++.. .+...++.....+..+|.
T Consensus 367 g~q~~Al~~L~~Wi~~~p-----~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKP-----KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhHHHHHHHHHHHHHhCc-----cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 999999999988765421 011111 112222233345555555544 344477788888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
..|+++.|...|+..+... +-|...||.|-..++...+.++|+.-|++...
T Consensus 442 ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred cchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 9999999999999998764 66788999999999999999999999998654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=55.00 Aligned_cols=77 Identities=10% Similarity=0.202 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTF-PISEGVFNALIYGHSQAN--------DMASAEGILTMMSQAGLEPSAQTYTKLM 201 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~yn~Li~~~~~~g--------~~~~A~~l~~~M~~~g~~pd~~ty~~ll 201 (902)
|.-+...+++...-.+|+.+++.|+ .|++.+||.++.+.++.. ++-+.+.+|++|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 7777778999999999999999999 899999999999988764 3456788999999999999999999999
Q ss_pred HHHHHc
Q psy767 202 CGYAKH 207 (902)
Q Consensus 202 ~a~~~~ 207 (902)
..+.+.
T Consensus 112 ~~Llkg 117 (120)
T PF08579_consen 112 GSLLKG 117 (120)
T ss_pred HHHHHh
Confidence 987653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00022 Score=47.52 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCC
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGI 114 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~ 114 (902)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.78 Score=54.79 Aligned_cols=196 Identities=12% Similarity=0.022 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
..|..|-.-|...-+...|...|+...+... -|......+ .+.|++..+++.|..+.-..-+.. +.-...+|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~------adtyae~~~we~a~~I~l~~~qka-~a~~~k~n 564 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAAS------ADTYAEESTWEEAFEICLRAAQKA-PAFACKEN 564 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHH------HHHhhccccHHHHHHHHHHHhhhc-hHHHHHhh
Confidence 4577888888777778888888888765421 144556666 899999999999998844433322 22223333
Q ss_pred HHH--HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 164 ALI--YGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 164 ~Li--~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
.+- -.|...++...|..-|+...+... -|...|..+..+|.+.|++..|.+.|.+...-++... ........+.+.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK-YGRFKEAVMECD 642 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH-HHHHHHHHHHHH
Confidence 333 345667888999999998887643 2667999999999999999999999987755432221 122223334455
Q ss_pred cCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQAG------LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g------~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.|++.+|...+....... -.--..++-.+...+.-.|-..+|...|+.
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 799999999888776421 111123333344444444545555555554
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.36 Score=50.65 Aligned_cols=306 Identities=13% Similarity=0.080 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKL---MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l---l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
.-.--+-+.+...|++..|+.-|...++- |...|.++ ...|...|+...|+.=+..+.+..+..... ..--.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A-RiQRg 113 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA-RIQRG 113 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-HHHhc
Confidence 33444556667778888888888887764 33344433 456777777776666666655533322111 11122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
.++.+.|+++.|..=|+.+.... |+.. ....++.+.-..++-+.+..++.+ ..+..+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l~~ql~s---------------~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVLVQQLKS---------------ASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHHHHHHHH---------------HhcCCchhh
Confidence 34556788888888888877653 3211 112222222222233332222221 111111111
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHHHcCCh
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALAVSGHG 394 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~~~g~~ 394 (902)
.+..+-. +. .-...|...|..-..+|...|++..|+.-++....-....+ +--+-..+..-|+.
T Consensus 174 ai~~i~~-------------ll-Ei~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 174 AIEMITH-------------LL-EIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHHHH-------------HH-hcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH
Confidence 1111100 00 11234677777888999999999999887776322212222 44566777888999
Q ss_pred HHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH
Q psy767 395 EYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN 474 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 474 (902)
+.++..+++..+ +.||...+.-.|-+..++.+.+. .|.+
T Consensus 240 ~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~le---s~e~----------------------------------- 278 (504)
T KOG0624|consen 240 ENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLE---SAEQ----------------------------------- 278 (504)
T ss_pred HHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHH---HHHH-----------------------------------
Confidence 999999888877 89998765555544433333222 2221
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCC-CCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHh
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANI-NGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR-AFNLAVLIKAH 552 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~-~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~ 552 (902)
..+.++|.++.+-.+...+.... +......+..+-.++...+. +.+|++.+.+..+ +.|| +.++.--..|+
T Consensus 279 ----~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~--~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 279 ----AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLD--IDPDDVQVLCDRAEAY 351 (504)
T ss_pred ----HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHh--cCchHHHHHHHHHHHH
Confidence 33456666666666665554322 21122233344455555666 9999999999876 3565 55655555555
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0093 Score=68.09 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=150.3
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHH
Q psy767 226 LFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHA 305 (902)
Q Consensus 226 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~ 305 (902)
+|.+..-..+..++...|-...|..+|+++. .|.-+|..|+..|+..+|..+..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~--------------- 450 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQE--------------- 450 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHH---------------
Confidence 3444555566666666777777777777654 4666777777777777777766542
Q ss_pred HHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHH
Q psy767 306 LAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDII 385 (902)
Q Consensus 306 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li 385 (902)
.+ -+|+...|..+.+......-+++|.++++....+ -...++
T Consensus 451 --------------------------------le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-A~r~~~--- 492 (777)
T KOG1128|consen 451 --------------------------------LE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-AQRSLA--- 492 (777)
T ss_pred --------------------------------hc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-HHHhhc---
Confidence 11 4678888888888888888899999998874332 111121
Q ss_pred HHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHH-HHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCC
Q psy767 386 HALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHL-INKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP 464 (902)
Q Consensus 386 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l-~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~ 464 (902)
....+.+++.++.+.|+.-.+.....+..+-....+ .+.++++.|.+.|...... .|..
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---~Pd~----------------- 552 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---EPDN----------------- 552 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---CCCc-----------------
Confidence 112236788899999988766344444444333222 3889999999988877653 2221
Q ss_pred CCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 465 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 465 ~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
.-...|+-.+|.+.|+-.+|...+.+..+.+..+ ..+|...+....+-|. +++|+..+.+|..
T Consensus 553 ----~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~---w~iWENymlvsvdvge-~eda~~A~~rll~ 615 (777)
T KOG1128|consen 553 ----AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH---WQIWENYMLVSVDVGE-FEDAIKAYHRLLD 615 (777)
T ss_pred ----hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC---Ceeeechhhhhhhccc-HHHHHHHHHHHHH
Confidence 1123456667999999999999999998876444 3567777777888999 9999999999754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0098 Score=56.46 Aligned_cols=100 Identities=5% Similarity=-0.202 Sum_probs=69.1
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+......+...|++++|...|+...... +.+...|..+ ..++.+.|++++|...|+.....+ +.+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l------g~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIAL------AGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 4455666677777777777777776543 2255566666 777777777777777777777654 5566777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
..++.+.|+.++|...|+...+. .|+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 77777777777777777777665 45443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.18 Score=54.70 Aligned_cols=193 Identities=9% Similarity=0.017 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHhHHHHHHHHHcC-CHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR-VTYQQLISNSKLISKYCQDG-NIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
+++.+-..+...++.++|+.+.+++.+. .|+. .+|+.- -.++...| ++++++..++.+.+.+ +-+..+|
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R------~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW 109 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFR------RLCLEALDADLEEELDFAEDVAEDN-PKNYQIW 109 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHH------HHHHHHcchhHHHHHHHHHHHHHHC-CcchHHh
Confidence 3455556666778889999999998864 4443 334444 34445556 5789999998888765 4555678
Q ss_pred HHHHHHHHhCCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 163 NALIYGHSQANDM--ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 163 n~Li~~~~~~g~~--~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
+.---.+.+.|.. ++++.+++.+.+... -|..+|+...-++...|+++++++.++.+.+.+..... .+..-..++.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s-AW~~R~~vl~ 187 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS-AWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-HHHHHHHHHH
Confidence 7665555566653 678888888887753 36778888888888888899888888888775543322 2222222222
Q ss_pred hc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q psy767 241 VS---SD----MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG----DMDSVRRLLAQ 289 (902)
Q Consensus 241 ~~---g~----~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g----~~~~A~~lf~~ 289 (902)
.. |. .+........++... +-|...|+-+...+...+ ...+|.+.+.+
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 22 21 234555554555443 556667777777766532 23345555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0026 Score=70.42 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQ--GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
+......++..+....+.+++..++-+.+.. ...--..|..++ |..|.+.|..+.+..++..=...|+-||.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~------vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHAL------VRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHH------HHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 5556666777777777777788887777664 222223345577 88888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
.+||.||+.+.+.|++..|.++..+|...+.-.+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888777777777777777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.066 Score=53.85 Aligned_cols=148 Identities=8% Similarity=-0.012 Sum_probs=102.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+..|...|+++.+..-...+.... . .+...++.+++...++...+.. ..|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-----~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-----H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-----c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 566778888877644432221110 0 1122566677777777776654 34667888888888888888
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHH-HHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNL-LILVSSD--MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~g~--~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
++|...++.......... ..+..+.. ++...|+ .++|.+++++..+.+ +-+..++..+-..+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P~~~-~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGENA-ELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888877654433 33333333 3455666 588999999888875 557788888999999999999999999
Q ss_pred HHhccC
Q psy767 288 AQSGSS 293 (902)
Q Consensus 288 ~~m~~~ 293 (902)
+++...
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 997654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0062 Score=53.30 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGL-EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI 239 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (902)
|-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++...-..+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i------------------------- 81 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI------------------------- 81 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH-------------------------
Confidence 445667777778999999999999999999 999999999999988764322111
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 277 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~ 277 (902)
.+++-..+.+|+.|...+++|+..+|+.++..+.+.
T Consensus 82 --e~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 82 --ENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred --HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 112336788999999999999999999999988753
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.03 Score=56.67 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
|...-+..+....++|++.+|...|++...- -++|...|+.+ --+|.+.|+++.|..-|.+..+-. +-+...
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~l------gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~ 170 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLL------GAALDQLGRFDEARRAYRQALELA-PNEPSI 170 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHH------HHHHHHccChhHHHHHHHHHHHhc-cCCchh
Confidence 4444445666666666666666666666542 24455666666 666666666666666666555432 223355
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
+|.|.-.|.-.|+.+.|..++......+.. |...-..+..+....|++++|..+-.
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 566666666666666666666666655422 44444555555666666666665544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.053 Score=64.86 Aligned_cols=122 Identities=7% Similarity=0.033 Sum_probs=53.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~ 209 (902)
.....+.|++++|+.+|+...+.. |-+...+..+..++.+.+++++|+..+++.... .|+. .....+-.++.+.|+
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 444445555555555555544432 223344444555555555555555555555444 2222 233334444444555
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
+++|..+|+++.. ..+.....+..+...+...|+.++|...|+...
T Consensus 170 ~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 170 SEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred hHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555444444444 112223333333333333444444444444443
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=1.2 Score=53.22 Aligned_cols=372 Identities=10% Similarity=0.075 Sum_probs=219.3
Q ss_pred HCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH-------------------hHHHHHHHHHcCCHHHHHHHHHHhhh---
Q psy767 95 DNEHTFSPTDFLAKLESQGIEPNRVTYQQLIS-------------------NSKLISKYCQDGNIEGATKILEFMRD--- 152 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~-------------------~~~li~~~~~~g~~~~A~~l~~~m~~--- 152 (902)
+.++..--+-+++.....|.. |..|||++-+ -+..+.-||...+.-.|.-.+++=..
T Consensus 850 kRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~e 928 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLE 928 (1666)
T ss_pred hhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHH
Confidence 344555556667777777866 8888998844 03334445544443333222211000
Q ss_pred -CCCCCCHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q psy767 153 -KTFPISEGVFNALIYGHSQANDMASAEG-----------ILTMMSQAGL--EPSAQTYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 153 -~~~~p~~~~yn~Li~~~~~~g~~~~A~~-----------l~~~M~~~g~--~pd~~ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
-++.-....|-...+-+.+..+.+.-.+ +.++....++ .-|....+..++++-..+-..+..++++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 0000111234444444444444443333 3334444443 2355556667888888999999999999
Q ss_pred hcccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCC
Q psy767 219 SLKPQSELFLCF-SFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNG 297 (902)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p 297 (902)
++.-.+...+.. ...-+..+-+...+...+.+..+++.... .|+ +......++-+++|+.+|+.....
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n---- 1077 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMN---- 1077 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhccc----
Confidence 887655544332 11222222233445556666666665433 222 233455667788999999873221
Q ss_pred CHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCC
Q psy767 298 DYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLV 377 (902)
Q Consensus 298 ~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~ 377 (902)
...+.-++-..+. ++.+..+. +. --...+|+.+..+-.+.|.+.+|.+-|-+- .+
T Consensus 1078 -~~A~~VLie~i~~---ldRA~efA----------------e~--~n~p~vWsqlakAQL~~~~v~dAieSyika---dD 1132 (1666)
T KOG0985|consen 1078 -VSAIQVLIENIGS---LDRAYEFA----------------ER--CNEPAVWSQLAKAQLQGGLVKDAIESYIKA---DD 1132 (1666)
T ss_pred -HHHHHHHHHHhhh---HHHHHHHH----------------Hh--hCChHHHHHHHHHHHhcCchHHHHHHHHhc---CC
Confidence 1111111221222 22222111 11 124578999999999999999999888652 23
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHH
Q psy767 378 NGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVR 456 (902)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~ 456 (902)
...|..++....+.|.|++-...+...++ ..-.|..-+ ++.+|++.+++.+-.+++. .|+..
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id~eLi~AyAkt~rl~elE~fi~--------gpN~A-------- 1195 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYIDSELIFAYAKTNRLTELEEFIA--------GPNVA-------- 1195 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccchHHHHHHHHHhchHHHHHHHhc--------CCCch--------
Confidence 44599999999999999999888876665 566776655 8999999999888766542 12211
Q ss_pred hhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 457 HMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
+.-.+-+.|...|.++.|.-++.... -|.-|...++..|. +..|..--++.
T Consensus 1196 --------------~i~~vGdrcf~~~~y~aAkl~y~~vS-----------N~a~La~TLV~Lge-yQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1196 --------------NIQQVGDRCFEEKMYEAAKLLYSNVS-----------NFAKLASTLVYLGE-YQGAVDAARKA--- 1246 (1666)
T ss_pred --------------hHHHHhHHHhhhhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHH-HHHHHHHhhhc---
Confidence 12235556888899998888776553 36677777888888 77776655543
Q ss_pred CCCCChhhHHHHHHHh
Q psy767 537 NLHPRAFNLAVLIKAH 552 (902)
Q Consensus 537 g~~Pd~~t~~~ll~a~ 552 (902)
-+..||.-+.-||
T Consensus 1247 ---ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFAC 1259 (1666)
T ss_pred ---cchhHHHHHHHHH
Confidence 4567888888665
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.28 Score=49.86 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=104.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhh
Q psy767 249 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNIC 328 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~ 328 (902)
..+.+.+......-+......-...|+..|++++|++.....
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------------------------------------- 134 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------------------------------------- 134 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--------------------------------------
Confidence 344555555444444444444455778888888888877641
Q ss_pred hcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHH----cCChHHHHHHHHHc
Q psy767 329 FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAV----SGHGEYIDEIISKI 404 (902)
Q Consensus 329 ~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m 404 (902)
-+......=+..+.+..+++-|.+.+++|..-....+.+.|..++.+ .+...+|.-+|++|
T Consensus 135 ---------------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 135 ---------------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred ---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 01112222234456677888888888888777666666666666543 33467888888988
Q ss_pred ccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcC
Q psy767 405 QPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKG 483 (902)
Q Consensus 405 ~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g 483 (902)
-++.+.+|...+ ...++...|++++|..+++....+..-.|. ...|+|..-.-.|
T Consensus 200 s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe------------------------tL~Nliv~a~~~G 255 (299)
T KOG3081|consen 200 SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE------------------------TLANLIVLALHLG 255 (299)
T ss_pred hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH------------------------HHHHHHHHHHHhC
Confidence 765433333333 233334788899999988888877555544 3456666655566
Q ss_pred ChHH-HHHHHHHHHHc
Q psy767 484 QIDA-AYRIVNTLARS 498 (902)
Q Consensus 484 ~~~~-A~~l~~~m~~~ 498 (902)
.-.+ ..+.+.+....
T Consensus 256 kd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKLS 271 (299)
T ss_pred CChHHHHHHHHHHHhc
Confidence 5544 34455555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.046 Score=60.07 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH
Q psy767 96 NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM 175 (902)
Q Consensus 96 ~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~ 175 (902)
.|.+++|+..++.+... .||...|..+ ....+.+.++..+|.+.++.+.... |-....+-.+-.+|.+.|++
T Consensus 319 ~~~~d~A~~~l~~L~~~--~P~N~~~~~~-----~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 319 AGQYDEALKLLQPLIAA--QPDNPYYLEL-----AGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 45555555555555432 3333222222 1455555555555555555554432 11133444445555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q psy767 176 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 176 ~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~ 214 (902)
.+|+.+++...... .-|...|..|..+|...|+..++.
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 55555555555442 224455555555555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.017 Score=54.08 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
.....+...+...|++++|.+.|+.....+ +.+...+..+ ...+.+.|+++.|..+|+.....+ +.+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGL------AACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 345556666777777777777777776643 2255556666 667777777777777777766654 45566666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 198 (902)
.+-..|...|++++|...|+...+. .|+...+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 6777777777788887777777665 35544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.057 Score=54.71 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=100.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
-..+--.|+-+....+........ +-|....+..+....+.|++..|+..|++..... .+|..+|+.+--+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 455555666666666655543322 3344555667777777777777777777776543 45666777777777777777
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
++|..-|.+..+-... .+...+-+...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..+-..
T Consensus 151 ~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777666665542211 22233444455556777778887777777654 44777777888888899999999888765
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.45 Score=49.96 Aligned_cols=299 Identities=10% Similarity=0.038 Sum_probs=164.9
Q ss_pred HHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHH---HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 49 LNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNAL---LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLI 125 (902)
Q Consensus 49 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~l---i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll 125 (902)
+.+.+...|.+.+|..-|....+ -|...|-++ ...|...|+...|+.=|....+ .+||-..-..-
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve---------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ- 111 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE---------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ- 111 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc---------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH-
Confidence 34444455666666666666665 344444444 3457777887777777777764 36663221110
Q ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhhhCCC------------CCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q psy767 126 SNSKLISKYCQDGNIEGATKILEFMRDKTF------------PISEGVF--NALIYGHSQANDMASAEGILTMMSQAGLE 191 (902)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------------~p~~~~y--n~Li~~~~~~g~~~~A~~l~~~M~~~g~~ 191 (902)
+ -..+.+.|.++.|..=|+...+.+- .+....| ...+..+.-.|+...|+.....+.+.. .
T Consensus 112 R----g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 112 R----GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred h----chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 0 2345677888888888877765431 0111122 223344556788888888888887763 2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 192 PSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLM 271 (902)
Q Consensus 192 pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI 271 (902)
-|...|..-..+|...|....|+.=++...+-....+...| -+..++...|+.+.++...++..+. .||....-.
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~-- 261 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP-- 261 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH--
Confidence 36667777778888888888877666555443333333222 2334445566666666666666543 344322111
Q ss_pred HHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHH
Q psy767 272 CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTK 351 (902)
Q Consensus 272 ~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ 351 (902)
.|-+ +.+..+.+..|
T Consensus 262 -~YKk---lkKv~K~les~------------------------------------------------------------- 276 (504)
T KOG0624|consen 262 -FYKK---LKKVVKSLESA------------------------------------------------------------- 276 (504)
T ss_pred -HHHH---HHHHHHHHHHH-------------------------------------------------------------
Confidence 0111 11111111111
Q ss_pred HHHHHHHcCCHHHHHHHHHH-cCCCCCccc-----HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHH----HHHH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-----YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANH----IYHL 421 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----i~~l 421 (902)
......++|.++..-.+. |+..|..+. +..+-..+...|++.+|++...+... +.||.... ..+|
T Consensus 277 --e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 277 --EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAY 351 (504)
T ss_pred --HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHH
Confidence 112233445555544444 444444332 33455566677778888888888877 77876643 2345
Q ss_pred HHcCCHHHHHHHHHHHHh
Q psy767 422 INKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~ 439 (902)
.-...++.|..-|+...+
T Consensus 352 l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 556677777777776655
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.014 Score=55.44 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=87.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy767 103 TDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGIL 182 (902)
Q Consensus 103 ~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~ 182 (902)
..+|++..+. .|+. +... ...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|...|
T Consensus 13 ~~~~~~al~~--~p~~--~~~~------g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYAS------GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHH------HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555555533 4543 4445 677889999999999999988876 668889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 183 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 183 ~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
+...... ..+..++..+..++...|+.++|...|+.....
T Consensus 82 ~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 82 GHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999864 336778888889999999999988888877653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.022 Score=63.00 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=99.7
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
-.+++..+...++++.|..+|+++.+.. |+.. ..+ +..+...++-.+|.+++.+..... +-+....+.-
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~L------A~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Q 240 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLL------ARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQ 240 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHH------HHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566667777889999999999998764 5543 335 777777888889999998887653 5566777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
...|.+.++.+.|+++.+++.+. .|+.. +|..|..+|...|+++.|+-.+..+.-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 78888999999999999999886 67665 999999999999999999988887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.11 Score=56.42 Aligned_cols=207 Identities=5% Similarity=-0.069 Sum_probs=138.6
Q ss_pred ccCCCCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHHHCC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHH
Q psy767 53 WCSEPSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYLDNE-HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKL 130 (902)
Q Consensus 53 ~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~l 130 (902)
+...+..++|..+.+.+.. +.|+. .+|+.--..+...| ++++++.+++++.+...+ +..+|+..
T Consensus 47 l~~~e~serAL~lt~~aI~-------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R------ 112 (320)
T PLN02789 47 YASDERSPRALDLTADVIR-------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHR------ 112 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH-------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHH------
Confidence 3445566667777666665 33443 45776666666667 579999999999876543 44456544
Q ss_pred HHHHHHcCC--HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Q psy767 131 ISKYCQDGN--IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH- 207 (902)
Q Consensus 131 i~~~~~~g~--~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~- 207 (902)
--.+.+.|+ .+++..+++.+.+.+ +-|..+|+...-++.+.|++++|++.++++.+.+.. |...|+.....+.+.
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 334455565 367888898988876 567899999999999999999999999999998754 667777666555554
Q ss_pred --CCh----hHHHHHHHhcccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 208 --GDM----DSIKTKIPSLKPQSELFLCFSFQLTNLLILV----SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 277 (902)
Q Consensus 208 --g~~----~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~ 277 (902)
|.. ++............ +.+...+..+..++.. .+...+|...+.+....+ ..+......|+..|+..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 222 34555554444332 2334455555555554 244566888888776643 45677888888888864
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=62.94 Aligned_cols=237 Identities=13% Similarity=0.032 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..|+..|...+++++|.++.+...+. .|+...+-..+ ...+.+.++..++.-+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~-----G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYIS-----GILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHH-----HHHHHhhcchhhhhhh---------------
Confidence 5567999999999999999999999976654 56654443330 2245555665544443
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
.++.......++.-+..++..|...+ -+...+..+..+|.+.|+.+++..+++++.+.+ ..+....+-+...+..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 23333333334433334444444432 233466677777777777777777777777765 3444555555566665
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAI 321 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l 321 (902)
. +++.|.+++...... |....++.+++++|.++..... .+.+....+
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRI 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHH
Confidence 6 777777777766542 6667788888888887654321 122222222
Q ss_pred HHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHH
Q psy767 322 VCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALA 389 (902)
Q Consensus 322 ~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~ 389 (902)
... -....|..--..++--|...|...++++++..+|+.+-....... ..-++..|.
T Consensus 210 ~~k-----------i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERK-----------VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHH-----------HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 211 122234445566777788889999999999999998533322223 334555554
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.018 Score=58.12 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+.+.+|.-+|++|.++ .+|+.-+.|-+..++...|++++|..++++....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444455555554443 2444444444444455555555555555544444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.009 Score=58.90 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHhHHHHHHHHH-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC----------------C
Q psy767 115 EPNRVTYQQLISNSKLISKYCQ-----DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA----------------N 173 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~----------------g 173 (902)
..|..+|..+ |+.|.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=+. .
T Consensus 44 ~k~K~~F~~~------V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~ 117 (228)
T PF06239_consen 44 AKDKATFLEA------VDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPR 117 (228)
T ss_pred cccHHHHHHH------HHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcH
Confidence 4578888888 888875 478899999999999999999999999999998652 2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 174 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+-+-|++++++|...|+-||..|+..|+..+++.+..
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 3578999999999999999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.025 Score=56.90 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=43.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH-SQAND--MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~-~~~g~--~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
...|...|++++|...|+.....+ +-+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+...
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~ 157 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHc
Confidence 555555555555555555544443 33444444444432 34444 25555555555554311 334444444555555
Q ss_pred CChhHHHHHHHhccc
Q psy767 208 GDMDSIKTKIPSLKP 222 (902)
Q Consensus 208 g~~~~a~~l~~~~~~ 222 (902)
|++++|...++.+..
T Consensus 158 g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 158 ADYAQAIELWQKVLD 172 (198)
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555554443
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.3 Score=49.65 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=79.1
Q ss_pred HHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHH
Q psy767 92 VYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE-GVFNALIYGHS 170 (902)
Q Consensus 92 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~yn~Li~~~~ 170 (902)
+....|+++.|...|.+...... +|.+.|+.- ..+|++.|++++|++=-..-.+ +.|+. --|+-.-.++.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnr------saa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNR------SAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCC-Cccchhcch------HHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH
Confidence 45568999999999999886543 388888888 9999999999998775544433 44554 56888888888
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204 (902)
Q Consensus 171 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~ 204 (902)
-.|++++|+.-|.+-.+.. .-|...++.+..++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 8999999999999988763 22445667777766
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.25 Score=59.92 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=126.4
Q ss_pred hCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHhcccCCCccch
Q psy767 152 DKTFPI-SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT-KLMCGYAKHGDMDSIKTKIPSLKPQSELFLC 229 (902)
Q Consensus 152 ~~~~~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~-~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~ 229 (902)
-.+..| +...|-.||..|-..+++++|.++.++..+. .|+...+. .+...+.+.++.+.+.-+ .
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------- 88 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------- 88 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h----------
Confidence 334444 5577999999999999999999999977765 56665433 333356666666654433 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHc
Q psy767 230 FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVS 309 (902)
Q Consensus 230 ~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~ 309 (902)
+........++..+..+...|... .-+...+-.+..+|-+.|+.++|..+|+++.
T Consensus 89 -----~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L------------------ 143 (906)
T PRK14720 89 -----LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLV------------------ 143 (906)
T ss_pred -----hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH------------------
Confidence 111222233455556666666653 3344578888999999999999999999842
Q ss_pred CCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q psy767 310 GHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALA 389 (902)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~ 389 (902)
+.. +-|..+.|-+...|+.. ++++|..++.+ .+..+.
T Consensus 144 -----------------------------~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K------------AV~~~i 180 (906)
T PRK14720 144 -----------------------------KAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK------------AIYRFI 180 (906)
T ss_pred -----------------------------hcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH------------HHHHHH
Confidence 222 34778888888899988 99999999876 344477
Q ss_pred HcCChHHHHHHHHHcccCCCCCCCHHH
Q psy767 390 VSGHGEYIDEIISKIQPGVGYSADAAN 416 (902)
Q Consensus 390 ~~g~~~~A~~l~~~m~~~~g~~pd~~t 416 (902)
..+++..+.++|.++.. ..|+.+.
T Consensus 181 ~~kq~~~~~e~W~k~~~---~~~~d~d 204 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVH---YNSDDFD 204 (906)
T ss_pred hhhcchHHHHHHHHHHh---cCcccch
Confidence 77788889999999887 6776654
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.27 Score=54.73 Aligned_cols=347 Identities=11% Similarity=-0.012 Sum_probs=200.0
Q ss_pred ccchHHhhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCH-HHHHHHHHHHH
Q psy767 16 GITTEVSEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDI-SHYNALLRVYL 94 (902)
Q Consensus 16 g~~~~~s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~-~~yn~li~~~~ 94 (902)
|...--++.++.|...+.......+.|-++|+--..+|.+.|++++|..--..... +.|+- --|+-.-.++.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-------l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR-------LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh-------cCCchhhHHHHhHHHHH
Confidence 44445578999999999888777788999999999999999998877654444443 56665 45888888888
Q ss_pred HCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHh---------------------------------------------H
Q psy767 95 DNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISN---------------------------------------------S 128 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~---------------------------------------------~ 128 (902)
-.|++++|+.-|.+=++. .| |...++-+..+ .
T Consensus 82 ~lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred hcccHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 899999999999875543 22 22222222110 0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhh-----hC-------CCCC------------C----------HHHHHHHHHHHHhCCC
Q psy767 129 KLISKYCQDGNIEGATKILEFMR-----DK-------TFPI------------S----------EGVFNALIYGHSQAND 174 (902)
Q Consensus 129 ~li~~~~~~g~~~~A~~l~~~m~-----~~-------~~~p------------~----------~~~yn~Li~~~~~~g~ 174 (902)
+=|..|..-.++..|..++.... .. +..| | ..-+-.+.++.-+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 00111111111222222211100 00 0011 0 1235567777788888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc------chhhHHHHHHHHHhcCCHHHH
Q psy767 175 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF------LCFSFQLTNLLILVSSDMASA 248 (902)
Q Consensus 175 ~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A 248 (902)
++.|++-|....+.. -+..-++..-.+|...|.+...........+.+... .......+...+.+.++++.|
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 999999988887764 244444555667777777776555544443332211 111222233344456788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-------------------------HHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHH
Q psy767 249 EGILTMMSQAGLEPSAQTYTK-------------------------LMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDII 303 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~~-------------------------LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~ 303 (902)
...|.+....-..||...-.. --+.+.+.|++..|+..|.+
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte-------------- 383 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE-------------- 383 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH--------------
Confidence 888887666544444322111 12223333444444444443
Q ss_pred HHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-H
Q psy767 304 HALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-Y 381 (902)
Q Consensus 304 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~ 381 (902)
+++.. +-|...|..---+|.+.|.+..|+.--+. ++..|.... |
T Consensus 384 ---------------------------------AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 384 ---------------------------------AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred ---------------------------------HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 22222 33667888888888888888887776554 232222211 4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHc
Q psy767 382 LDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINK 424 (902)
Q Consensus 382 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~ 424 (902)
..=..++-...+++.|++.|.+-.+ ..|+...++..+.++
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale---~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALE---LDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHH
Confidence 3344445555678888888888877 668777666665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.063 Score=64.22 Aligned_cols=138 Identities=8% Similarity=0.022 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPI 157 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 157 (902)
.+.++..+-.|.....+.|.+++|..+++...+. .||.. ....+ ...+.+.+++++|+...+.....+ +-
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~------a~~L~~~~~~eeA~~~~~~~l~~~-p~ 152 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILM------LRGVKRQQGIEAGRAEIELYFSGG-SS 152 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHhhcC-CC
Confidence 4456888889999999999999999999999864 66644 44455 888999999999999999998876 55
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 158 SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 158 ~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
+....+.+-.++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+........
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 66778888899999999999999999999853 224779999999999999999999999988664433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.045 Score=60.55 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
...+|+..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.+++.+...... .+.........++.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34566677777899999999999999874 554 44578888888888899998888875432 23444555566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
..++.+.|..+.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7999999999999999863 44556999999999999999999999998654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.075 Score=50.47 Aligned_cols=128 Identities=15% Similarity=0.055 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT-YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS--EG 160 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~ 160 (902)
..|..++..+. .++...+...++.+.+.... +... +..+ .+...+...|++++|...|+......-.|+ ..
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l----~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPS-SPYAALAAL----QLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC-ChHHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 34566666663 66677777777777664211 2111 1111 124566667777777777777766542221 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHh
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPS 219 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 219 (902)
..-.|...+...|++++|+..++..... ......+...-..|.+.|++++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344556667777777777777553322 12333444555667777777777666653
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=1.4 Score=51.07 Aligned_cols=377 Identities=12% Similarity=0.099 Sum_probs=210.2
Q ss_pred HHhcccCCCCCCcCcccccCcc---ccccCCCCCCCCHHHHH-----HHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHH
Q psy767 49 LNSKWCSEPSLGPGNLPCEDPF---SVHTGELDVPLDISHYN-----ALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT 120 (902)
Q Consensus 49 l~~~~~~~g~~~~A~~~f~~~~---~~~~~~~g~~pd~~~yn-----~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 120 (902)
+..++.+..+.++-.++..... ..++...|++-+..-|. .+|.-+...+.+..|.++-..|...-..- ..+
T Consensus 395 fGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~V 473 (829)
T KOG2280|consen 395 FGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRV 473 (829)
T ss_pred hcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHH
Confidence 3444555555444333333222 22335667777776664 45667777788888888887775321111 345
Q ss_pred HHHHHHhHHHHHHHHHcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----CC
Q psy767 121 YQQLISNSKLISKYCQDGN---IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLE----PS 193 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~----pd 193 (902)
|... ..-+.+..+ -+.+..+-+++... .. .-++|..+.+---.+|+.+.|..+++.=...+-. .+
T Consensus 474 l~~W------a~~kI~~~d~~d~~vld~I~~kls~~-~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~ 545 (829)
T KOG2280|consen 474 LLEW------ARRKIKQSDKMDEEVLDKIDEKLSAK-LT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLK 545 (829)
T ss_pred HHHH------HHHHHhccCccchHHHHHHHHHhccc-CC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhc
Confidence 5555 555555422 22333333344332 22 2356777777777788888888887642222110 12
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
..-+...+.-+...|+.+-...++-.+...-.. ..+.....+...|..+|.+..+.. |. +-+..
T Consensus 546 m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~---------s~l~~~l~~~p~a~~lY~~~~r~~---~~----~~l~d 609 (829)
T KOG2280|consen 546 MKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR---------SSLFMTLRNQPLALSLYRQFMRHQ---DR----ATLYD 609 (829)
T ss_pred cchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---------HHHHHHHHhchhhhHHHHHHHHhh---ch----hhhhh
Confidence 223444556666677777666655555432100 000111223334444554443311 00 00112
Q ss_pred HHHcCCHHHHHHHHHHh------ccCCCCCCHHHHHHHHHHcCCcc-cHHHHHHHHHHhhhhhcccccchHHhcCCCCCH
Q psy767 274 YAKHGDMDSVRRLLAQS------GSSLVNGDYLDIIHALAVSGHGE-YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSA 346 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~m------~~~~~~p~~~tl~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~ 346 (902)
+.+.++-..+...|..- ...+..|+..+...++....... ..+...+....+.. +...-.+.|.....
T Consensus 610 ~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l-----Q~~Le~q~~~~f~d 684 (829)
T KOG2280|consen 610 FYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKL-----QRTLEDQFGGSFVD 684 (829)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-----HHHHHHHhcccccc
Confidence 22333333333332210 01244555555555555444311 11111111111100 00112345555666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCC
Q psy767 347 QTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQ 426 (902)
Q Consensus 347 ~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~ 426 (902)
.+.+--+.-+...|+-.+|.++-.+.+.. +..-|-.-+.+++..++|++-+++-+.++.--|+.| |+.+|.+.|+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fkip-dKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~P----FVe~c~~~~n 759 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIP-DKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLP----FVEACLKQGN 759 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCc-chhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchh----HHHHHHhccc
Confidence 66777778888999999999998887664 555677788999999999999998888875477777 9999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHH
Q psy767 427 IDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIV 492 (902)
Q Consensus 427 ~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~ 492 (902)
.++|.+++.+.... ...+.+|.++|++.+|.++-
T Consensus 760 ~~EA~KYiprv~~l--------------------------------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGL--------------------------------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccCCh--------------------------------HHHHHHHHHhccHHHHHHHH
Confidence 99999998765321 14677899999999987664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.87 Score=48.67 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCC-cc---chHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCC--hhhHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGE-QL---PVGGFLVRHMVKTNQPIDKVLAVCHRLTDE--NLHPR--AFNLA 546 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~-~~---~~~n~li~~~~~~g~~~~~A~~l~~~m~~~--g~~Pd--~~t~~ 546 (902)
+...+.+.|++++|.++|++.-......+. .. ..|-..+-.+...|+ ...|...+++..+. ++... .....
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 334466777777777777776654322211 11 112122224445577 78888888887643 23222 34446
Q ss_pred HHHHHhcccccccCcchhhHhhhhhccCcc
Q psy767 547 VLIKAHVLKEDYTGAVETFEYCVNQFRATP 576 (902)
Q Consensus 547 ~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~ 576 (902)
.|+.++ ..|+.+.|+..+..|..+.
T Consensus 240 ~l~~A~-----~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 240 DLLEAY-----EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHH-----HTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHH-----HhCCHHHHHHHHHHHcccC
Confidence 667664 8999999888888886665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.031 Score=52.18 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=75.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|++++|...|+.....+ +.+...|..+...+.+.|++++|..+|+.....+ ..+..++..+...+...|++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 777888999999999999987765 5677888889999999999999999999887764 33567777788888899999
Q ss_pred hHHHHHHHhcccC
Q psy767 211 DSIKTKIPSLKPQ 223 (902)
Q Consensus 211 ~~a~~l~~~~~~~ 223 (902)
++|...|+...+.
T Consensus 102 ~~A~~~~~~al~~ 114 (135)
T TIGR02552 102 ESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHh
Confidence 9888888777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.28 Score=49.55 Aligned_cols=187 Identities=11% Similarity=0.067 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHH
Q psy767 173 NDMASAEGILTMMSQ---AG-LEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMAS 247 (902)
Q Consensus 173 g~~~~A~~l~~~M~~---~g-~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 247 (902)
.+.++.++++.+|.. .| ..++.. .|--++-+....|+.+.|...++.+...- +.+......-...+...|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 456666666666643 23 445554 34455666666777777777666655433 2333333344444555677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhh
Q psy767 248 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNI 327 (902)
Q Consensus 248 A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~ 327 (902)
|.++++.+.+.. +.|.++|-.=+...-..|+.-+|++-+.+...
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~----------------------------------- 148 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD----------------------------------- 148 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------------------------------
Confidence 777777777765 66667777666666666776677666654211
Q ss_pred hhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc-HHHHHHHHHHcC---ChHHHHHHHH
Q psy767 328 CFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-YLDIIHALAVSG---HGEYIDEIIS 402 (902)
Q Consensus 328 ~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~~li~~~~~~g---~~~~A~~l~~ 402 (902)
.+.-|...|.-|-..|...|++++|.-.++++ -..|..+- +..+...+...| +.+-+.+.|.
T Consensus 149 -------------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 149 -------------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred -------------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 13457888999999999999999999888884 44444444 445555554444 4577888888
Q ss_pred HcccCCCCCC
Q psy767 403 KIQPGVGYSA 412 (902)
Q Consensus 403 ~m~~~~g~~p 412 (902)
+..+ +.|
T Consensus 216 ~alk---l~~ 222 (289)
T KOG3060|consen 216 RALK---LNP 222 (289)
T ss_pred HHHH---hCh
Confidence 8877 666
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.13 Score=48.80 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISE---GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA--QTYTKLMCGYA 205 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~ty~~ll~a~~ 205 (902)
+..+ ..++...+...++.+.... +.+. ...-.+...+...|++++|...|+........|+. .....|...+.
T Consensus 19 ~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 19 LQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 5554 4788888888888877653 3331 22333446777788888888888888877522222 23344566777
Q ss_pred HcCChhHHHHHHHhc
Q psy767 206 KHGDMDSIKTKIPSL 220 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~ 220 (902)
..|++++|+..++..
T Consensus 97 ~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 97 QQGQYDEALATLQQI 111 (145)
T ss_pred HcCCHHHHHHHHHhc
Confidence 788888777777653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.025 Score=62.91 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=86.6
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 105 FLAKLES---QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK--TFPISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 105 l~~~M~~---~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
++..|.+ .+...+......+ ++.+....+++.+..++-..... ....-..|..++|+.|...|..+.++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~f------vn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l 123 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIF------VNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELL 123 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHH------HhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHH
Confidence 4444433 2334456666666 88888888888898888777654 22223355679999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 180 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 180 ~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
.++..=...|+=||..||+.||..+.+.|++..|.++...|...+..
T Consensus 124 ~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~ 170 (429)
T PF10037_consen 124 ELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEF 170 (429)
T ss_pred HHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998777766665544433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=2.6 Score=50.06 Aligned_cols=201 Identities=11% Similarity=0.042 Sum_probs=105.7
Q ss_pred HHHHHHHH--HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 86 YNALLRVY--LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 86 yn~li~~~--~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
|..++.++ .+.|+.++|..+++.....+.. |..|...+ -..|-..|..++|..+|+..... -|+.....
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l------~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~ 114 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFL------QNVYRDLGKLDEAVHLYERANQK--YPSEELLY 114 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHH------HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHH
Confidence 44455553 3566666676666665543333 55566666 66666667777777777666554 34455556
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHhcccCC-CccchhhH
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD----------MDSIKTKIPSLKPQS-ELFLCFSF 232 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~----------~~~a~~l~~~~~~~~-~~~~~~~~ 232 (902)
.+..+|.|.+.+.+-.+.=-+|-+. ..-+...|=++++.....-. ..-|.+.++.+.+.+ ......-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 6666666666554433332222221 11122333333333332211 123555555555544 33334444
Q ss_pred HHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCC
Q psy767 233 QLTNLLILVSSDMASAEGIL-TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVN 296 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~-~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~ 296 (902)
..+..++...|++++|..++ ....+.-..-+...-+--+..+...+++.+..++-.++...+..
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 44555555667777777766 34444333444455555666666667777666666666555433
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.5 Score=53.91 Aligned_cols=58 Identities=9% Similarity=0.148 Sum_probs=38.0
Q ss_pred chHHHHHHH---HHhcCHHHHHH---HHHHhhhhhchhhccchhhhhhhccCCchhHHHHHHHH
Q psy767 675 ITSAYVVHM---LRQHNLKEAAL---LAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLVTVVRAV 732 (902)
Q Consensus 675 ~~~~~l~~~---~~~g~~~~a~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 732 (902)
..+++|+-+ +..|....|.. ++++|-...+|..+-..|+.+....+.|---.+-|=.+
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 345555555 57777777765 45677777888888888887766666665555544333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.7 Score=46.99 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-HHHHHHHHc
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-NHIYHLINK 424 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~i~~l~~~ 424 (902)
..+.+..|.-+...|+...|.++-++.+. |+..-|-..+.+|+..++|++..++... + -.|=.+ .|+.+|.+.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k----KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-K----KSPIGYEPFVEACLKY 250 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C----CCCCChHHHHHHHHHC
Confidence 34555667777888999999999888765 3556688999999999999987776543 1 245444 388889999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHH
Q psy767 425 GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVN 493 (902)
Q Consensus 425 g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~ 493 (902)
|...+|..+..++.. -.-+..|.++|.+.+|.+.-.
T Consensus 251 ~~~~eA~~yI~k~~~---------------------------------~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKIPD---------------------------------EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhCCh---------------------------------HHHHHHHHHCCCHHHHHHHHH
Confidence 999999988877421 246777999999999866643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.038 Score=46.75 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=70.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|++++|..+|+...+.. +.+...+..+...+...|++++|.+.|+...... ..+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 677788899999999999887654 4455778888888888999999999999887764 23445777788888888888
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
+.|...+.....
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 888877766543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.043 Score=46.45 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
.|..+...+...|++++|..+|++..+... .+...+..+ ...+...|++++|.+.|+...... +.+..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNL------AAAYYKLGKYEEALEDYEKALELD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHH
Confidence 356677788889999999999999886532 234566666 888889999999999999987765 445578889
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 165 LIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+...+...|+.+.|...+....+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 999999999999999999887754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.025 Score=55.91 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhh
Q psy767 157 ISEGVFNALIYGHSQ-----ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFS 231 (902)
Q Consensus 157 p~~~~yn~Li~~~~~-----~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~ 231 (902)
.|..+|..+|..|.+ .|..+=....+..|.+-|+.-|..+|+.||..+=+ |.+- -..+|+.+...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 456888888888865 47888888899999999999999999999998875 3322 12223222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 232 FQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 232 ~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~ 279 (902)
.-.+-+-|.+++++|...|+.||..++..|++.+++.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 134566799999999999999999999999999988876
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.19 Score=45.38 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCC-C-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIE-P-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FPISEG 160 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~-p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~ 160 (902)
+|-.....+.+.|++++|...|+.+...... | ....+..+ ..++.+.|+++.|...|+.+.... .+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWL------GEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH------HHHHHhhccHHHHHHHHHHHHHHCCCCCcccH
Confidence 4556777788889999999999888764311 1 12344455 778888899999999998876542 112245
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g 189 (902)
++..+..++.+.|+.++|.+.|+++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 67777788888899999999998888774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.55 Score=53.14 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHH---------HHHhhhCCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHH
Q psy767 115 EPNRVTYQQLISNSKLISKYCQDGNIEGATKI---------LEFMRDKTFPISEGVFNALIYGHSQANDM--ASAEGILT 183 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l---------~~~m~~~~~~p~~~~yn~Li~~~~~~g~~--~~A~~l~~ 183 (902)
.|..+.+.+- +.-|...|.+++|.++ |+.+.... .+.-.+++.=.+|.+..+. -+.+.-++
T Consensus 553 ~~~evp~~~~------m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~ 624 (1081)
T KOG1538|consen 553 SAVEVPQSAP------MYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELE 624 (1081)
T ss_pred eccccccccc------chhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHH
Confidence 4445555555 6777888888888765 33333221 1334566677788776653 45555677
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 184 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 184 ~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
+|++.|-.|+.... ...|+-.|.+.+|-++|.+...
T Consensus 625 ~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 625 ERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCc
Confidence 88889988988653 4567778899999888876533
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.13 Score=56.93 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
...+...|++++|++.|++..+.... +...|..+ ..+|.+.|++++|...++.....+ +.+...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~------a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADR------AQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 34556788999999999998875422 55666666 788888999999999999988765 55677888888899
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 170 SQANDMASAEGILTMMSQAGLEPSAQTYTKLMCG 203 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a 203 (902)
.+.|++++|+..|++..+. .|+.......+..
T Consensus 81 ~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999999999999998876 4665555544433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.16 Score=49.61 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP--NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
-...|..+...+...|++++|...|++.......| ...+|..+ -..|...|++++|...++...... +...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~l------g~~~~~~g~~~eA~~~~~~Al~~~-~~~~ 106 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNI------GLIHTSNGEHTKALEYYFQALERN-PFLP 106 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 35667777778888888888888888887543222 12456666 778888888888888888876653 3344
Q ss_pred HHHHHHHHHHH-------hCCCHHHHHHHHHHH
Q psy767 160 GVFNALIYGHS-------QANDMASAEGILTMM 185 (902)
Q Consensus 160 ~~yn~Li~~~~-------~~g~~~~A~~l~~~M 185 (902)
.+++.+...+. ..|+++.|+..+++.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 56666666666 667777555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.069 Score=50.76 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=75.6
Q ss_pred CHHHHHHHHH---HHHHCCCchHHHHHHHHHHHC--C-CCCCHH--HHHHHHH----------hHHHHHHHHHcCCHHHH
Q psy767 82 DISHYNALLR---VYLDNEHTFSPTDFLAKLESQ--G-IEPNRV--TYQQLIS----------NSKLISKYCQDGNIEGA 143 (902)
Q Consensus 82 d~~~yn~li~---~~~~~g~~~~A~~l~~~M~~~--g-~~pd~~--t~~~ll~----------~~~li~~~~~~g~~~~A 143 (902)
|+..|..++. .....++...+...+.++... | +-|+.. .|..-.+ ...++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3455555543 345678888899988888753 2 222211 1111111 35567777789999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q psy767 144 TKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMS-----QAGLEPSAQTY 197 (902)
Q Consensus 144 ~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~ty 197 (902)
..+.+.+...+ |-|...|..+|.+|...|+...|.++|+.+. +.|+.|+..|-
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99999998887 7788999999999999999999999998874 34899988764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.29 Score=48.01 Aligned_cols=86 Identities=9% Similarity=0.027 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN--RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
....|..+...|...|++++|...|++..+....+. ...+..+ ...+.+.|+++.|...++...... +-+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~-p~~~ 106 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNM------GIIYASNGEHDKALEYYHQALELN-PKQP 106 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-cccH
Confidence 345577777778888999999999988876543332 3456666 788888899999999888877653 3345
Q ss_pred HHHHHHHHHHHhCCC
Q psy767 160 GVFNALIYGHSQAND 174 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~ 174 (902)
..+..+...|...|+
T Consensus 107 ~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 107 SALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCC
Confidence 666777777777666
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.14 Score=46.27 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=65.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT--FPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLE--PSAQTYTKLMCGYAK 206 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~ty~~ll~a~~~ 206 (902)
...+.+.|++++|.+.|+.+.... -+.....+..+..++.+.|+++.|...|+.+...... .....+..+..++.+
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 667788888888888888886643 1112345666888888888888888888888765211 123456666777778
Q ss_pred cCChhHHHHHHHhcccC
Q psy767 207 HGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~ 223 (902)
.|+.++|.+.++.+...
T Consensus 89 ~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKR 105 (119)
T ss_pred hCChHHHHHHHHHHHHH
Confidence 88888777777766554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.23 Score=53.01 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=84.5
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG-HSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~-~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
.+|..+ +...-+.+.++.|..+|....+.+ ..+...|-..... |...++.+.|.++|+...+. +..+..-|
T Consensus 2 ~v~i~~------m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQY------MRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHH------HHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 356666 888888888999999999987554 2233444444444 33356777799999998876 34466777
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELF--LCFSFQLTNLLILVSSDMASAEGILTMMSQ 257 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~ 257 (902)
..-+..+.+.++.+.|..+|+.....-... ....|..++.+=...|+++.+..+.+++.+
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888889999999999998887752111 123444444444555666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.033 Score=44.92 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=46.6
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll 201 (902)
...|++++|.++|+.+.... |-+...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45688888888888877664 456777778888888888888888888888776 56655555443
|
... |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.59 Score=52.10 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
-+|-.+|+.--|..-++.|..+|.+..+.+..+ +...++++|.-|| .+|..-|.++|+.-.+.- ..++.-...++..
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHH
Confidence 345555555555555666666666666655555 4445555555444 344555556655433321 1112223334445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 239 ILVSSDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~~g~~pd--~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
+...++-..|..+|+.....++.|| ...|..+|.-=..-|++..++++-+++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555666666777777776655544 46788888877888888888877776543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.021 Score=48.44 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILT 183 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~ 183 (902)
..+|.+.|++++|..+++. ...+ +.+....-.+..+|.+.|++++|+++|+
T Consensus 32 a~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555555544 1111 0111222223444555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.2 Score=44.36 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC
Q psy767 265 QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP 344 (902)
Q Consensus 265 ~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p 344 (902)
.++..+...+.+.|++++|.++|++....... ......
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~------------------------------------------~~l~~~ 193 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLE------------------------------------------NNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC------------------------------------------HCTTGH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc------------------------------------------ccccch
Confidence 34556677899999999999999985432211 111122
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHcC-CCCCcc-c-----HHHHHHHHHHc--CChHHHHHHHHHccc
Q psy767 345 SAQ-TYTKLMCGYAKHGDMDSIRRLLAQNG-SSLVNG-D-----YLDIIHALAVS--GHGEYIDEIISKIQP 406 (902)
Q Consensus 345 ~~~-t~~~Li~~y~~~g~~~~A~~~~~~m~-~~~~~~-~-----~~~li~~~~~~--g~~~~A~~l~~~m~~ 406 (902)
+.. .|-..+-++...||+..|...|++.. ..|.-. + ...||.+|-.. ..+..++.-|+.+.+
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 222 23334446777899999999999843 322221 1 23456665432 234667777777655
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.18 Score=53.88 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH-cCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ-DGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
.+|..+|+..-+.+..+.|..+|.+.++.+. -+..+|... ..+-.+ .++.+.|.+||+...+. ++.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~------A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAY------ALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHH------HHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHH------HHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 5789999999999899999999999986432 123334333 333223 56777799999998765 56677889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSA----QTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
..-++.+.+.|+.+.|..+|+..... .|.. ..|...+..=.+.|+++.+.++.+.+..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999876 3344 4888888888899999998888877654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=95.30 E-value=3.2 Score=42.23 Aligned_cols=162 Identities=13% Similarity=0.082 Sum_probs=95.1
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
|..++-+....|+.+.|...++.+...- |.+.-...+ . .-.+-..|++++|.++++.+.+.+ |-|.++|--=
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~l---k--am~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRK 126 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKL---K--AMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRK 126 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHH---H--HHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHH
Confidence 5566666667777777777777776542 332211111 0 112234577777888887777776 5666666655
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH---Hhc
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI---LVS 242 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~ 242 (902)
+-..-..|+.-+|++-+.+..+. +.-|...|..+-..|...|++++|.-.++++.-..+.... -+..+..++ ...
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l-~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL-YFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHhhH
Confidence 55555566666777777777665 3457777777777777777777777777777654332211 111222221 223
Q ss_pred CCHHHHHHHHHHHHH
Q psy767 243 SDMASAEGILTMMSQ 257 (902)
Q Consensus 243 g~~~~A~~l~~~m~~ 257 (902)
.+++.+.+.|....+
T Consensus 205 eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 205 ENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555666655554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.55 Score=45.78 Aligned_cols=86 Identities=8% Similarity=-0.045 Sum_probs=60.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPI--SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA--- 205 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~--- 205 (902)
...+...|++++|...|+......-.+ ...+|..+-..|...|++++|+..|+...... .....++..+...+.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhh
Confidence 667778899999999999886543222 23578888899999999999999999888752 223445666666666
Q ss_pred ----HcCChhHHHHHH
Q psy767 206 ----KHGDMDSIKTKI 217 (902)
Q Consensus 206 ----~~g~~~~a~~l~ 217 (902)
..|+++.|...+
T Consensus 121 ~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 121 EQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHcccHHHHHHHH
Confidence 555555554433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.036 Score=47.01 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHH
Q psy767 137 DGNIEGATKILEFMRDKTF-PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 137 ~g~~~~A~~l~~~m~~~~~-~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~~~~a~ 214 (902)
.|+++.|..+++.+.+..- .++...+-.+..+|.+.|++++|+.+++. .+. .|+. .....+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5778888888888876542 12344555578888888888888888877 222 2222 34445567788888888888
Q ss_pred HHHHh
Q psy767 215 TKIPS 219 (902)
Q Consensus 215 ~l~~~ 219 (902)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.71 Score=45.19 Aligned_cols=82 Identities=11% Similarity=0.003 Sum_probs=62.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPIS--EGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKH 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~ 207 (902)
...+...|++++|...|++....+-.+. ...|..+...+.+.|++++|...|.+.... .| +...+..+...+...
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHc
Confidence 7778889999999999998876432222 467888899999999999999999998876 34 345666666777777
Q ss_pred CChhHHH
Q psy767 208 GDMDSIK 214 (902)
Q Consensus 208 g~~~~a~ 214 (902)
|+...+.
T Consensus 120 g~~~~a~ 126 (172)
T PRK02603 120 GEKAEEA 126 (172)
T ss_pred CChHhHh
Confidence 7655443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.96 E-value=6.7 Score=42.49 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
.-.+.-+...|+...|.++-.+.. .||-.-|-..|.+|+..++|++-.++.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa 231 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFA 231 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 333444445666667776666665 567777777777777777776665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.11 Score=41.28 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=47.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
...+.+.|++++|.++|+...+.. +-+...|..+-.++.+.|++++|..+|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788899999999999988876 557788888889999999999999999988765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.8 Score=44.99 Aligned_cols=179 Identities=12% Similarity=0.006 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCCccc----HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH--HH
Q psy767 345 SAQTYTKLMCGYAKHGDMDSIRRLLAQNG-SSLVNGD----YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA--NH 417 (902)
Q Consensus 345 ~~~t~~~Li~~y~~~g~~~~A~~~~~~m~-~~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~ 417 (902)
+...+-.....+...|++++|...|++.. ..|..+. .-.++.++.+.++++.|...+++..+..+-.|+.- -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 33333345556677999999999999853 3333322 23567888899999999999999988444445433 24
Q ss_pred HHHHHH--cC---------------C---HHHHHHHHHHHHhccCCCCCcccchh---hHHHhhhhcCCCCCccccchHH
Q psy767 418 IYHLIN--KG---------------Q---IDAAYRIVNTLARSANINGEQLPVGG---FLVRHMVKTNQPGVGYSADAAN 474 (902)
Q Consensus 418 i~~l~~--~g---------------~---~~~A~~~~~~m~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~ 474 (902)
+.+++. .+ + ..+|...|+.+.+.++-.+-.+..-. .+..++.+. -+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~----------e~~ 180 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY----------ELS 180 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH----------HHH
Confidence 555442 11 2 34677888888887654433322211 111111110 112
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT 534 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~ 534 (902)
+..-|.+.|.+..|..-|+.+...-...+....+.-.++.+|...|. .++|......+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~-~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL-NAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC-hHHHHHHHHHHh
Confidence 33338899999999999999998765554455677788899999999 888888776654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.48 Score=44.89 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=75.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
-.-+...|++++|.++|+.....+ +-+..-|-.|--+|-..|++++|+..|........ -|...+-.+-.++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 555678999999999999988776 44566777888888889999999999999988764 3677888889999999999
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
+.|.+.|+....
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 999988886654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.43 Score=43.82 Aligned_cols=87 Identities=9% Similarity=0.128 Sum_probs=69.0
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhh---------------hCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMR---------------DKTFPISEGVFNALIYGHSQANDMASAEGI 181 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~---------------~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l 181 (902)
|..++..+ |-++++.|+++....+++..- .....|+..+..+++.+|+..|++..|+++
T Consensus 1 de~~~~~i------i~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 1 DEELLCNI------IYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred ChHHHHHH------HHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 45677778 999999999999999987752 123567888899999999999999999999
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Q psy767 182 LTMMSQA-GLEPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 182 ~~~M~~~-g~~pd~~ty~~ll~a~~~~g~ 209 (902)
.+...+. ++.-+..+|..|+.-+...-+
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 9888654 677778889888886555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.93 Score=41.21 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=23.7
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 169 HSQANDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
+-..|+.++|+.+|++....|.... ...+..+-..+...|+.++|..+|+...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334455555555555544443322 1233334444444455555544444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.52 Score=43.27 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 193 SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 193 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~ 272 (902)
|..++.++|.++++.|+++...++++..-.-+.......- . --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~-----------~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG-----------D---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC-----------c---------cCCCCCCCCCHHHHHHHHH
Confidence 4556777777777777777777777666543222111000 0 0112345899999999999
Q ss_pred HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHH
Q psy767 273 GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL 352 (902)
Q Consensus 273 a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~L 352 (902)
+|+.+|++..|+++.+.. ....+++.+..+|..|
T Consensus 61 sf~~n~~i~~al~~vd~f----------------------------------------------s~~Y~I~i~~~~W~~L 94 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFF----------------------------------------------SRKYPIPIPKEFWRRL 94 (126)
T ss_pred HHHhcccHHHHHHHHHHH----------------------------------------------HHHcCCCCCHHHHHHH
Confidence 999999999999999873 5667777788888888
Q ss_pred HHHHHH
Q psy767 353 MCGYAK 358 (902)
Q Consensus 353 i~~y~~ 358 (902)
+.-...
T Consensus 95 l~W~~v 100 (126)
T PF12921_consen 95 LEWAYV 100 (126)
T ss_pred HHHHHH
Confidence 875443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=7.4 Score=40.45 Aligned_cols=186 Identities=11% Similarity=0.019 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...+-.....+...|++++|.+.|+++...-..+ .....+. -.+..++.+.++++.|...|+...+..-.-....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~---l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQ---LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 33333334455567899999999999998754332 2222111 1227788899999999999999876531112234
Q ss_pred HHHHHHHHHh--C---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 162 FNALIYGHSQ--A---------------ND---MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 162 yn~Li~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
|-..+.|.+. . .+ ..+|++.|+++++. -|++.- ..+|..-+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQY-------------TTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChh-------------HHHHHHHHHHHH
Confidence 4444444442 1 11 23566666666665 344321 222222111111
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 222 PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA--GLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
.. ....-..+...|.+.|.+..|..-++.+.+. +-+......-.++.+|...|..++|..+...+
T Consensus 172 ~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 172 DR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 10 0001113445566778888888888888763 33444566778889999999999998877654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.5 Score=52.32 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=72.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|+++.|...|+...+.+ +-+...|..+..+|.+.|++++|+..++...... ..+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445567899999999999988765 5567788888889999999999999999988763 22556777888888888888
Q ss_pred hHHHHHHHhcccC
Q psy767 211 DSIKTKIPSLKPQ 223 (902)
Q Consensus 211 ~~a~~l~~~~~~~ 223 (902)
++|...|+.....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776654
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.8 Score=49.13 Aligned_cols=57 Identities=14% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH
Q psy767 84 SHYNALLRVYLDNEHT--FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF 149 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~--~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~ 149 (902)
..++..=++|.+-++. -+...-+++|+++|-.|+.... ...++-.|++.+|-++|.+
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---------A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---------ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---------HHHHHhhhhHHHHHHHHHH
Confidence 3455555666655443 2344445667777877877543 5556777888888777754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.7 Score=48.93 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=99.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC--------ChhHHHHHHH
Q psy767 153 KTFPISEGVFNALIYGHSQAN-----DMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHG--------DMDSIKTKIP 218 (902)
Q Consensus 153 ~~~~p~~~~yn~Li~~~~~~g-----~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g--------~~~~a~~l~~ 218 (902)
...+.|...|...+++..... ....|..+|++..+. .|+- ..|..+..++.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345678899999998865532 377999999999987 5664 35555444443321 1223334344
Q ss_pred hcccC-CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc-CCCC
Q psy767 219 SLKPQ-SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS-SLVN 296 (902)
Q Consensus 219 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~-~~~~ 296 (902)
..... ....+...+..+.......|++++|...+++....+ |+...|..+...|...|+.++|.+.|++... .+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33222 123344566666666677899999999999999875 6889999999999999999999999988544 3344
Q ss_pred CC
Q psy767 297 GD 298 (902)
Q Consensus 297 p~ 298 (902)
|+
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 44
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.07 E-value=2.2 Score=38.87 Aligned_cols=106 Identities=14% Similarity=0.027 Sum_probs=69.2
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----HHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNR--VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS----EGVF 162 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~y 162 (902)
+-.++-..|+.++|..+|++....|..... ..+-.+ -+.+...|++++|..+|+...... |+ ....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~l------astlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~ 78 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQL------ASTLRNLGRYDEALALLEEALEEF--PDDELNAALR 78 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHH
Confidence 344566678888899999888887766542 233344 677778889999988888776542 22 2222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
..+.-++...|+.++|++.+-.... ++...|.--|..|+.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 3333466778888888888776554 234466666665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.19 Score=40.32 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=50.4
Q ss_pred HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q psy767 94 LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALI 166 (902)
Q Consensus 94 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li 166 (902)
.+.|++++|.++|+.+...... +...+..+ ..+|.+.|++++|..+++.+.... |+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l------a~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLL------AQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHH------HHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 5689999999999999876433 66666677 999999999999999999998764 5555555554
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.3 Score=49.50 Aligned_cols=140 Identities=11% Similarity=0.030 Sum_probs=97.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHHHc--------CCHHH
Q psy767 77 LDVPLDISHYNALLRVYLDNE-----HTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYCQD--------GNIEG 142 (902)
Q Consensus 77 ~g~~pd~~~yn~li~~~~~~g-----~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~~~--------g~~~~ 142 (902)
.+.+.|...|...+++..... ....|..+|++..+. .|+ ...|..+ ..++... .++..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~l------a~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEK------ALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHH------HHHHHHHHhcCCccHHHHHH
Confidence 345678899999999965432 266899999999865 555 3444443 2222211 12334
Q ss_pred HHHHHHHhhhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 143 ATKILEFMRDK-TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 143 A~~l~~~m~~~-~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
+.+..+..... ..+.+...|.++.-.+...|++++|...|++.... .|+...|..+...|...|+.++|...+....
T Consensus 403 a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 403 LSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444443332 23445577888776677789999999999999987 4788899999999999999999999888876
Q ss_pred cCCCc
Q psy767 222 PQSEL 226 (902)
Q Consensus 222 ~~~~~ 226 (902)
..++.
T Consensus 481 ~L~P~ 485 (517)
T PRK10153 481 NLRPG 485 (517)
T ss_pred hcCCC
Confidence 65444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.18 Score=40.14 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=27.6
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 354 CGYAKHGDMDSIRRLLAQN-GSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 354 ~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
..+.+.|++++|...|++. ...|..+. |..+..++...|++++|.+.|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666652 33333222 44555555566666666666665544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.46 Score=38.70 Aligned_cols=63 Identities=17% Similarity=0.081 Sum_probs=51.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
-..|.+.++++.|.++++.+...+ |.+...|...-.++.+.|++++|...|+...+. .|+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 456788899999999999988875 567778888888899999999999999988876 455444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.37 Score=38.74 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN-DMASAEGILTMMSQ 187 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g-~~~~A~~l~~~M~~ 187 (902)
-..+...|++++|+..|+...+.+ +-+...|..+-.+|.+.| ++++|++.|+...+
T Consensus 10 g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 10 GQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 556666666666666666665554 445556666666666666 56666666665544
|
... |
| >KOG3941|consensus | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.67 Score=47.41 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHhHHHHHHHHH-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC----------------
Q psy767 115 EPNRVTYQQLISNSKLISKYCQ-----DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN---------------- 173 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g---------------- 173 (902)
+-|..+|-.. +..+.. .+.++-....+..|.+.|+.-|..+|+.||+.+-+..
T Consensus 64 ~RdK~sfl~~------V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~ 137 (406)
T KOG3941|consen 64 KRDKDSFLAA------VATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQ 137 (406)
T ss_pred cccHHHHHHH------HHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCch
Confidence 3355666666 655553 3556777777889999999999999999998875532
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 174 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+-+=+++++++|...|+.||..+-..|++++++.+..
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2356889999999999999999999999999887754
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=92.84 E-value=1 Score=46.87 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=72.4
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~ 171 (902)
..+.+++.+|+..|.+.++. .| |.+-|..- ..+|++.|.++.|.+=.+.....+ +--..+|..|-.+|..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNR------AAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNR------AAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHH------HHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHc
Confidence 45678888888888888754 44 55556666 778888888888888777766655 3445678888888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~ 202 (902)
.|++++|++.|+...+. .|+..+|-.=|.
T Consensus 162 ~gk~~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred cCcHHHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 88888888888877764 677776655443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.17 Score=40.84 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcC-ChHHHHHHHHHccc
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSG-HGEYIDEIISKIQP 406 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g-~~~~A~~l~~~m~~ 406 (902)
..+|..+-..+...|++++|+..|.+ +...|..+. |..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 44556666666666666666666665 333333333 555666666666 46666666665543
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.51 E-value=2.6 Score=45.15 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=93.9
Q ss_pred HHHHHHHcCC-h----HHHHHHHHHcccCCCCCCCHHHHHHHHH--Hc-------CCHHHHHHHHHHHHhccCCCCCccc
Q psy767 384 IIHALAVSGH-G----EYIDEIISKIQPGVGYSADAANHIYHLI--NK-------GQIDAAYRIVNTLARSANINGEQLP 449 (902)
Q Consensus 384 li~~~~~~g~-~----~~A~~l~~~m~~~~g~~pd~~t~i~~l~--~~-------g~~~~A~~~~~~m~~~~~i~~~~~~ 449 (902)
+...++.++. + ++.+.+++.|.+ .|++-+.++++.++. .. -....|..+++.|++++..--...+
T Consensus 63 la~~l~~~~~~p~~~~~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 63 LAALLDISFEDPEEAFKEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 3344444444 4 567788899998 899999998777664 22 3578899999999998765544332
Q ss_pred chhhHHHhhhhcCCCCCccccchHHHHHHHHhcCC----hHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCC-HH
Q psy767 450 VGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQ----IDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP-ID 524 (902)
Q Consensus 450 ~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~----~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~-~~ 524 (902)
+ .++.+.+. ..+. .+.++.+++.+...+...++++.....++.-+-....+ ..
T Consensus 142 ~---------------------~~a~lLA~-~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~ 199 (297)
T PF13170_consen 142 Y---------------------PFAALLAM-TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVA 199 (297)
T ss_pred h---------------------hHHHHHhc-ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHH
Confidence 2 22333222 2222 45677888888887766665555444444333222220 34
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHH
Q psy767 525 KVLAVCHRLTDENLHPRAFNLAVLI 549 (902)
Q Consensus 525 ~A~~l~~~m~~~g~~Pd~~t~~~ll 549 (902)
++.++++.+.+.|+++...+|.++-
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 7899999999999999999987665
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=92.36 E-value=24 Score=43.75 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCCCCCccc--HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHH
Q psy767 352 LMCGYAKHGDMDSIRRLLAQNGSSLVNGD--YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDA 429 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~ 429 (902)
-+.+|..+|+|.+|+.+-.++....+..- -..|+..+...+++-+|-++..+... |..-.+..||+...|++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s------d~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS------DPEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc------CHHHHHHHHhhHhHHHH
Confidence 35677888888888888887655433322 24677888888888888888777654 22335677889999999
Q ss_pred HHHHHHHHHh
Q psy767 430 AYRIVNTLAR 439 (902)
Q Consensus 430 A~~~~~~m~~ 439 (902)
|..+-..-.+
T Consensus 1045 Alrva~~~~~ 1054 (1265)
T KOG1920|consen 1045 ALRVASKAKR 1054 (1265)
T ss_pred HHHHHHhccc
Confidence 9888765543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.27 E-value=22 Score=39.49 Aligned_cols=457 Identities=13% Similarity=0.066 Sum_probs=223.9
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPIS------EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY--AK 206 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~------~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~--~~ 206 (902)
-+.+++.+|.++|..+.+.- ..+ .+.-+-+|++|... +.+.....+.+..+. .| ...|..+..+. -+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 46789999999999886542 112 34456788888765 577777777777665 33 34555555543 45
Q ss_pred cCChhHHHHHHHhcccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQ--SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR 284 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~ 284 (902)
.+.+++|.+.+..-... +..+..-..++ .+ .-+|..-=+..+..+...|.+.++.
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni------------------~~-----l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNI------------------QQ-----LFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhH------------------HH-----HhhHHHHHHHHHHHHHhcCCcchHH
Confidence 67788887776655443 22211111000 00 1234444466777888889999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q psy767 285 RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDS 364 (902)
Q Consensus 285 ~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~ 364 (902)
.++++|... +.++....+..+|+.++-++++.=-++-
T Consensus 149 ~iLn~i~~~-------------------------------------------llkrE~~w~~d~yd~~vlmlsrSYfLEl 185 (549)
T PF07079_consen 149 AILNRIIER-------------------------------------------LLKRECEWNSDMYDRAVLMLSRSYFLEL 185 (549)
T ss_pred HHHHHHHHH-------------------------------------------HhhhhhcccHHHHHHHHHHHhHHHHHHH
Confidence 888876432 5556667788888887776666421111
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHcCChHH---------HHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHH
Q psy767 365 IRRLLAQNGSSLVNGDYLDIIHALAVSGHGEY---------IDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVN 435 (902)
Q Consensus 365 A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~---------A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~ 435 (902)
-+ -......|+|--||-.|.+.=+.-+ +.+++..+.+..-+.|-. +..--.++++
T Consensus 186 ----~e-~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e-----------~l~~~mq~l~ 249 (549)
T PF07079_consen 186 ----KE-SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE-----------RLPPLMQILE 249 (549)
T ss_pred ----HH-hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh-----------hccHHHHHHH
Confidence 11 1222355667777777664322211 122222221111122211 1111112222
Q ss_pred HHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCC--CCCccchHHHHH
Q psy767 436 TLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANI--NGEQLPVGGFLV 513 (902)
Q Consensus 436 ~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~--~~~~~~~~n~li 513 (902)
.. +++-+.|... . .+-.++..+.+ +.+++..+-+.+...... ...-...+..++
T Consensus 250 ~W-e~~yv~p~~~----L-----------------Vi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~L 305 (549)
T PF07079_consen 250 NW-ENFYVHPNYD----L-----------------VIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLL 305 (549)
T ss_pred HH-HhhccCCchh----H-----------------HHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22 1122222210 0 01112222222 222222222222111100 001234677788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHh-----cccccccCcchhhHhhhhhccCcchHHHHHHHHHH
Q psy767 514 RHMVKTNQPIDKVLAVCHRLTDENLHPRAFNLAVLI-KAH-----VLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQ 587 (902)
Q Consensus 514 ~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~-----~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~ 587 (902)
...++.+. ..+|-+.+.-+.. +.|+...-.-++ +-. +|..+ .+|.-+.....++.+...
T Consensus 306 s~~Vk~~~-T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD------------~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 306 SFKVKQVQ-TEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDD------------ESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred HHHHHHHh-HHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcch------------HHHHHHHHHHHHHHHHHh
Confidence 88888888 8888888887655 345433222221 000 02000 000011111224444443
Q ss_pred hhHHHhhhhhhhcccccccchhhhHHHH----Hhhh-HHHHHHHHHHHHHHhCCCCChHHHHHhhh---------ccCCC
Q psy767 588 AEDAACLQRITDLSTSIHGEVNSLYDLM----LSFL-DAEVLRILQVAEAEFGVGSNTETLRDYVL---------PVLSP 653 (902)
Q Consensus 588 ~g~~~~~~~~~~~~~~i~p~~~~~~~li----~~~~-~~~al~ll~~m~~~~g~~P~~~t~~~lv~---------~~~~~ 653 (902)
.. +.-.--.|++-... ..|. -+.|+++++.+ . .+.|....-.+.+. +...+
T Consensus 371 ~D------------iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i-l--~ft~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 371 YD------------IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI-L--QFTNYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred hc------------ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH-H--HhccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 32 11110011111111 2222 78899999988 3 34444222222221 11112
Q ss_pred CCCChHHHHHHHHhcCCCCccc----hHHHHHHH---HHhcCHHHHHHHHHHhhhhhchhhccchhhhhhhccCCchhHH
Q psy767 654 PNQVSGEVFSQLRSVGVTIGSI----TSAYVVHM---LRQHNLKEAALLAKSFRAHYAKVVVRPVLAVSYLRTQDLPSLV 726 (902)
Q Consensus 654 ~~~~~~~~~~~l~~~g~~~~~~----~~~~l~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 726 (902)
.....-.+-..+.+.|++|..+ ..+++-.+ --+|++.++.--..-...-.+....++.+..+.....+++..-
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 3322334556777899999883 44444444 3677777776554443332334446667777788888888887
Q ss_pred HHHHHH
Q psy767 727 TVVRAV 732 (902)
Q Consensus 727 ~~~~~~ 732 (902)
..+..+
T Consensus 516 ~~l~~L 521 (549)
T PF07079_consen 516 EYLQKL 521 (549)
T ss_pred HHHHhC
Confidence 777665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.13 E-value=8.2 Score=36.09 Aligned_cols=122 Identities=8% Similarity=-0.014 Sum_probs=82.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
|..+...+........++.+...+ +.+...+|.+|..|++.+ ..+..+.+.. ..+......+++.|.+.+.+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 888888899999999999988877 467789999999999874 4455555552 12444555688888888988
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILV-SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 275 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~ 275 (902)
+++.-++..+.. +.-.+..+.. .++++.|.+.+.+ ..+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 888888877644 1112222222 2666666666654 225556666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.5 Score=46.03 Aligned_cols=63 Identities=14% Similarity=-0.030 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 473 ANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 473 ~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
|.+...|...|++++|...|..+......++..+..+-.+...+...|+ .++|..+|++..+.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-~~~A~~~~~~vi~~ 246 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-TAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 3455557888888888888888877654443344455555666667787 88888888887664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.75 E-value=7.7 Score=37.61 Aligned_cols=118 Identities=9% Similarity=0.025 Sum_probs=59.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG---LEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g---~~pd~~ty~~ll~a~~~~ 207 (902)
..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++.+-+.. -.|| +.-.+.+.+...
T Consensus 96 a~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~ 173 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhc
Confidence 55556666666666666655443334445555555555555566666666666555432 1222 223344555556
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~ 252 (902)
|...+|..-|+.....-+ .......+...+.+.|+.+++..-+
T Consensus 174 g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 174 GKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred CCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 666656555555544322 2223333444455555555444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.1 Score=43.76 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CC
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR----VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FP 156 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~ 156 (902)
...|+..+..+.+.|++++|...|+.+.+.- |+. ..+-.+ ...|...|++++|...|+.+...- -+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~L------G~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWL------GQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 3457776666677788999999998888653 332 234445 778888899999999998887532 12
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
.....+-.+...+...|+.++|..+|+...+. .|+..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 22344444566677888999999999888876 45543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.2 Score=39.45 Aligned_cols=96 Identities=6% Similarity=-0.149 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
..-.+-.-+...|++++|..+|+-...-... +..-|-.| -.++-..|++++|...|......+ +-|...+-.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gL------G~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRL------GECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3344555567789999999999998865322 33344445 666677899999999999988877 467788888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 165 LIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+-.++...|+.+.|.+-|+.....
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999999977654
|
|
| >KOG3941|consensus | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.9 Score=44.32 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH--HHHHHHhcccCCCccch
Q psy767 157 ISEGVFNALIYGHSQ-----ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS--IKTKIPSLKPQSELFLC 229 (902)
Q Consensus 157 p~~~~yn~Li~~~~~-----~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~--a~~l~~~~~~~~~~~~~ 229 (902)
-|..+|-+++..+.. .+.++-....++.|.+-|++-|..+|..||+.+-+..-+-. ..++|-..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HY--------- 135 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHY--------- 135 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhC---------
Confidence 345666666666643 35677777788999999999999999999998776544331 11111111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q psy767 230 FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280 (902)
Q Consensus 230 ~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~ 280 (902)
-.+-+-+..++++|...|+.||-.+-..||+++.+.+..
T Consensus 136 ------------P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 136 ------------PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ------------chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 123345789999999999999999999999999998874
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=3.1 Score=42.96 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=28.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
+...+...|++++|-.+|..+.......+..++..--|.....+.|. .++|...|.+..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~-~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN-TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 33445555555555555555444433333333444444444444454 4555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.2 Score=42.05 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhh-----hCCCCCCH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMR-----DKTFPISE 159 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~-----~~~~~p~~ 159 (902)
....++..+...|++++|..++..+.... +-|...|..+ |.+|...|+...|.++|+.+. +.|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~l------m~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLL------MRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHH------HHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHH------HHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566677778999999999999998753 3377889999 999999999999999999874 45888887
Q ss_pred HHH
Q psy767 160 GVF 162 (902)
Q Consensus 160 ~~y 162 (902)
.+-
T Consensus 137 ~~~ 139 (146)
T PF03704_consen 137 ETR 139 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.50 E-value=23 Score=36.46 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccH-----HHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH--HHH
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDY-----LDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA--NHI 418 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~i 418 (902)
...|+.- ..-.+.|++++|.+.|+.+...-.-..| ..++.++-+.++++.|+..+++..+..+-.||.- .+|
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444443 3456789999999999997543222222 3566677799999999999999988677777643 357
Q ss_pred HHHH-------HcCCH---HHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH--HHHHHHhcCChH
Q psy767 419 YHLI-------NKGQI---DAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN--HIYHLINKGQID 486 (902)
Q Consensus 419 ~~l~-------~~g~~---~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--li~~~~k~g~~~ 486 (902)
.+++ ...+. ..|..-|+.+..++.-++=.+++-..+.. -+..- .-.. +-.-|.+.|.+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~----~~d~L-----A~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK----LNDAL-----AGHEMAIARYYLKRGAYV 184 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH----HHHHH-----HHHHHHHHHHHHHhcChH
Confidence 7665 22333 44555555555554333222222111000 00000 0012 222378899999
Q ss_pred HHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 487 AAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 487 ~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
.|..-++.|.+.-..........-.+..+|-..|. .++|...-.-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGL-TDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhc
Confidence 99999999998743332233455567777777787 67777666555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=90.17 E-value=22 Score=35.73 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=33.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHH
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPID 524 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~ 524 (902)
+..-|.+.|.+..|..-++.+...-...+......-.++.++-+.|. .+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~-~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL-KQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC-hH
Confidence 34448899999999999999888743332233455667888888887 44
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=89.67 E-value=6.7 Score=42.55 Aligned_cols=279 Identities=11% Similarity=-0.051 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHH--HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH--hhhC--C
Q psy767 81 LDISHYNALLRV--YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEF--MRDK--T 154 (902)
Q Consensus 81 pd~~~yn~li~~--~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~--m~~~--~ 154 (902)
.+...|..-+.+ +++.|+.+....+|+...+.|-. |..|.+++ ++.|-++|.-.+++++|++.... ...+ |
T Consensus 13 q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAI--YsQLGNAyfyL~DY~kAl~yH~hDltlar~lg 89 (639)
T KOG1130|consen 13 QDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAI--YSQLGNAYFYLKDYEKALKYHTHDLTLARLLG 89 (639)
T ss_pred hhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHH--HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence 345566666655 78999999999999999988844 54444444 33337788888899999876432 1110 0
Q ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHH-HH---HHHCCC-CCCHHHHHHHHHHHHHcCChh-----------------
Q psy767 155 FP-ISEGVFNALIYGHSQANDMASAEGIL-TM---MSQAGL-EPSAQTYTKLMCGYAKHGDMD----------------- 211 (902)
Q Consensus 155 ~~-p~~~~yn~Li~~~~~~g~~~~A~~l~-~~---M~~~g~-~pd~~ty~~ll~a~~~~g~~~----------------- 211 (902)
-+ -...+...|-+.+--.|.+++|+-.- +. ..+.|- ......|..|-+.|...|+.-
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 00 00112222333333345555554321 11 112121 112334555566665554321
Q ss_pred ---HHHHHHHhccc----CCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHHcC
Q psy767 212 ---SIKTKIPSLKP----QSEL-FLCFSFQLTNLLILVSSDMASAEGILTMMSQ----AGLE-PSAQTYTKLMCGYAKHG 278 (902)
Q Consensus 212 ---~a~~l~~~~~~----~~~~-~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~----~g~~-pd~~ty~~LI~a~~~~g 278 (902)
.|.++|.+-.+ .+.. .....|..+...|...|+++.|....+.-.. .|-. ..-..+..|-+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 11222211100 0000 0011122222222334666666655543221 2211 11234555666666667
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcC-CCCCHHHHHHHHHHHH
Q psy767 279 DMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAG-LEPSAQTYTKLMCGYA 357 (902)
Q Consensus 279 ~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g-~~p~~~t~~~Li~~y~ 357 (902)
+++.|.+.|+.-. .. ..+.| -.....+..+|-.+|.
T Consensus 250 ~fe~A~ehYK~tl-----------~L--------------------------------Aielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 250 NFELAIEHYKLTL-----------NL--------------------------------AIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred ccHhHHHHHHHHH-----------HH--------------------------------HHHhcchhHHHHHHHHhhhHHH
Confidence 7777777666410 00 11111 1223455666777777
Q ss_pred HcCCHHHHHHHHHH-------cC-CCCCcccHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 358 KHGDMDSIRRLLAQ-------NG-SSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 358 ~~g~~~~A~~~~~~-------m~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
-..++++|+.++.+ +. ..+....|-+|..+|..-|..++|+.+...-.
T Consensus 287 ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 287 LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77888888888765 11 11222346678888888888888777665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.62 E-value=6.7 Score=41.13 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHc---CCHHHHHHHHHHhhhCCCCCC
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQD---GNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~---g~~~~A~~l~~~m~~~~~~p~ 158 (902)
|...|-.|-..|...|++..|..-|+...+.. .+|...+..+ ..++... ..-.++..+|+++...+ +-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~------aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ 226 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGL------AEALYYQAGQQMTAKARALLRQALALD-PAN 226 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHH------HHHHHHhcCCcccHHHHHHHHHHHhcC-Ccc
Confidence 45556666666666666666666666555421 1123333333 2222221 22345556666665554 344
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+.+-.-|-..+...|++.+|...++.|.+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 445555555566666666666666666554
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=89.45 E-value=28 Score=35.83 Aligned_cols=138 Identities=11% Similarity=0.016 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH--
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL-- 237 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~-- 237 (902)
.+.+++++.+.-.|.+.-...++++.++..-+-+......|.+.--+.||.+.|...|+..++.....+......+..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455667777777788888888888888876566777777788888888888888888887766444433333322221
Q ss_pred ---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC
Q psy767 238 ---LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD 298 (902)
Q Consensus 238 ---~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~ 298 (902)
++.-+.++..|...+.+..... ..|...-|.-.-...-.|+..+|++..+.|......|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 2233677777888887777654 44555555544555567888999999999887766554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.1 Score=37.09 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q psy767 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS-AQTYTKLMCG 273 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~LI~a 273 (902)
.+|+.+-..|...|++++|+..|++. .++.+.+.. -.|+ ..+++.+-..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~a----------------------------l~~~~~~~~--~~~~~a~~~~~lg~~ 55 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKA----------------------------LDIEEQLGD--DHPDTANTLNNLGEC 55 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH----------------------------HHHHHHTTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHHHHHHCC--CCHHHHHHHHHHHHH
Confidence 35667777777777777777776643 223222211 0232 5678888889
Q ss_pred HHHcCCHHHHHHHHHH
Q psy767 274 YAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~ 289 (902)
|...|++++|++.|++
T Consensus 56 ~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 56 YYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 9999999999999987
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=4.9 Score=44.83 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA----QTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
+.+...|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888888888888888888888887776 4553 35888888888888888888888877663
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=88.71 E-value=33 Score=37.81 Aligned_cols=107 Identities=18% Similarity=0.051 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCC--CCC-HHHHHHHHHhHHHHHHHHH---cCCHHHHHHHHHHhhhC
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGI--EPN-RVTYQQLISNSKLISKYCQ---DGNIEGATKILEFMRDK 153 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~--~pd-~~t~~~ll~~~~li~~~~~---~g~~~~A~~l~~~m~~~ 153 (902)
.+|++. .++-.|-...+++...++.+.|...-. .++ ...-... .-++-+ .|+-++|+.++..+...
T Consensus 140 s~div~--~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~y------afALnRrn~~gdre~Al~il~~~l~~ 211 (374)
T PF13281_consen 140 SPDIVI--NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQY------AFALNRRNKPGDREKALQILLPVLES 211 (374)
T ss_pred ChhHHH--HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHH------HHHHhhcccCCCHHHHHHHHHHHHhc
Confidence 344444 555568899999999999999986411 111 1111111 334556 89999999999996666
Q ss_pred CCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 154 TFPISEGVFNALIYGHSQ---------ANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 154 ~~~p~~~~yn~Li~~~~~---------~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
.-.++..+|..+.+.|-. ....++|+..|.+--+. .||..+
T Consensus 212 ~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~ 261 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYS 261 (374)
T ss_pred cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--Cccccc
Confidence 667888899888776632 12367777777765544 355443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.63 E-value=25 Score=34.25 Aligned_cols=134 Identities=11% Similarity=-0.000 Sum_probs=101.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc-chhhH
Q psy767 154 TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF-LCFSF 232 (902)
Q Consensus 154 ~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~-~~~~~ 232 (902)
...|++..--.|-.+....|+..+|...|.+...-=+.-|....-.+.++....++...+...++.+.+..... ++...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45678888888999999999999999999998765456678888889999999999999999999987765332 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
-.+...+...|...+|+.-|+..... -|+...-..--..+.+.|+.+++..-+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 56677788899999999999998876 44444333333445667766666554443
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=88.44 E-value=7.6 Score=39.71 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=108.8
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHH
Q psy767 97 EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMA 176 (902)
Q Consensus 97 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~ 176 (902)
...+..+++|++=.. ..-+.+ +..+.-.|.+.-...++.+..+++-+.+...-..|.+.-.+.|+.+
T Consensus 163 ~~~ESsv~lW~KRl~-------~Vmy~~------~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k 229 (366)
T KOG2796|consen 163 LAEESSIRLWRKRLG-------RVMYSM------ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK 229 (366)
T ss_pred cchhhHHHHHHHHHH-------HHHHHH------HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH
Confidence 334667788876442 233445 6666667778778888888888776777888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 177 SAEGILTMMSQAGLEPSAQTYTKLM-----CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 177 ~A~~l~~~M~~~g~~pd~~ty~~ll-----~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
.|...|++..+..-..|..+++.++ ..|.-.+++..|...+.++...+.... ...+.-...+...|+..+|.+.
T Consensus 230 ~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 230 TAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-VANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch-hhhchHHHHHHHHHHHHHHHHH
Confidence 9999999776554344555555443 345556778888888888877554322 2222222233347999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH
Q psy767 252 LTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 252 ~~~m~~~g~~pd~~ty~~LI~ 272 (902)
++.|... .|...+-++++-
T Consensus 309 ~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 309 LEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred HHHHhcc--CCccchhhhHHH
Confidence 9999876 566655555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=88.40 E-value=1.6 Score=35.97 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK----T-FPIS-EGVFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~-~~p~-~~~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
.+|+.+ -..|...|++++|+..|++..+. | -.|+ ..+++.+-.+|...|++++|+++|++..+
T Consensus 6 ~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNL------ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHH------HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346666 88999999999999999887532 1 1122 56788888999999999999999987653
|
... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=88.21 E-value=43 Score=41.68 Aligned_cols=116 Identities=12% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHH----HHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCC-CCCCHHHH
Q psy767 343 EPSAQTYTKLMCGY----AKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVG-YSADAANH 417 (902)
Q Consensus 343 ~p~~~t~~~Li~~y----~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~pd~~t~ 417 (902)
.|+...+.....+| ...+.+++|--+|+..+. ..--+.+|..+|+|.+|+.+..++....+ +.-....+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L 1005 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEEL 1005 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 55665555555444 455777777777775332 23456778888999999999888764100 11111235
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHH
Q psy767 418 IYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTL 495 (902)
Q Consensus 418 i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m 495 (902)
..-+...++.-+|-++..+...+ .-..+..|++...|++|..+...-
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~sd-------------------------------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLSD-------------------------------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhcC-------------------------------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 56666888888887777766543 234666677777888877665443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=5.8 Score=44.24 Aligned_cols=67 Identities=9% Similarity=-0.072 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR----VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK 153 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~ 153 (902)
-+.+...|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+ ..+|+..|++++|+..++...+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNL------Acaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNK------ACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778999999999999999999999998754 5553 357777 88999999999999999988775
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=87.32 E-value=51 Score=36.34 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=104.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT---FPISEGVFNALIYGHSQ---ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~yn~Li~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~ 204 (902)
+-.|-...+++...++.+.|.... +.-+...--...-++-+ .|+.++|++++..+....-.++..||..+...|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 556888899999999999997652 11112222233345556 899999999999976666678889999888776
Q ss_pred HHc---------CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCC-H---HHHHHHH---H-HHHHCCC---CCCH
Q psy767 205 AKH---------GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSD-M---ASAEGIL---T-MMSQAGL---EPSA 264 (902)
Q Consensus 205 ~~~---------g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~---~~A~~l~---~-~m~~~g~---~pd~ 264 (902)
... ...++|...+.+..... .......+....+. ..|. . .+..++- . .+.+.|. ..|.
T Consensus 228 KD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~-~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 228 KDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLM-LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHH-HcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 532 23556777777665544 11112222222222 2232 1 1222222 2 2223443 4555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCH
Q psy767 265 QTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDY 299 (902)
Q Consensus 265 ~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~ 299 (902)
=.+.+++.++.-.|+.++|.+..++|... ..|.|
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l-~~~~W 339 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL-KPPAW 339 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCcch
Confidence 66788999999999999999999998765 35554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=87.31 E-value=30 Score=39.86 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDK-TFPIS-----EGVFNALIYGHSQ----ANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~-----~~~yn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
..+++..+=.||-+.+++.+..-.+. ++.-. .-.|+.++..++- ....+.|.+++..+.+. -|+..-|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 44577777789999999888775543 23211 1345555555544 45778999999999987 7888777
Q ss_pred HHH-HHHHHHcCChhHHHHHHHhcccCCCccch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 198 TKL-MCGYAKHGDMDSIKTKIPSLKPQSELFLC---FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 198 ~~l-l~a~~~~g~~~~a~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
... -+.+...|++++|.+.|+........... ..+.-+...+....++++|...|..+.+.. ..+...|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 654 35567789999999999976643222211 222223333455899999999999998754 4555666655543
Q ss_pred -HHHcCCH-------HHHHHHHHHh
Q psy767 274 -YAKHGDM-------DSVRRLLAQS 290 (902)
Q Consensus 274 -~~~~g~~-------~~A~~lf~~m 290 (902)
|...|+. ++|.++|.+.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 3456666 7888888874
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.20 E-value=39 Score=34.84 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=105.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHH
Q psy767 271 MCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYT 350 (902)
Q Consensus 271 I~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~ 350 (902)
...-.+.|++++|.+.|+.+...... -+-...+--
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~---------------------------------------------s~~~~qa~l 75 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPF---------------------------------------------SPYSEQAQL 75 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------------------------CcccHHHHH
Confidence 33456889999999999986443211 111334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHH-cCCCCCccc--HHHHHHHHHHcC-------ChH---HHHHHHHHcccC---CCCCCCH
Q psy767 351 KLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD--YLDIIHALAVSG-------HGE---YIDEIISKIQPG---VGYSADA 414 (902)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~--~~~li~~~~~~g-------~~~---~A~~l~~~m~~~---~g~~pd~ 414 (902)
.++-++-+.++++.|...+++ +...|..++ |...|.+++.-- +.. .|..-|+.+... ..+.||.
T Consensus 76 ~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA 155 (254)
T COG4105 76 DLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDA 155 (254)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhH
Confidence 677888899999999999988 666677766 777777776433 222 333333333331 4455554
Q ss_pred HH---------------HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHH
Q psy767 415 AN---------------HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHL 479 (902)
Q Consensus 415 ~t---------------~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~ 479 (902)
.. +-.-|.+.|.+..|..-++.|.+.+.-.+.... .+..+..+|
T Consensus 156 ~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e---------------------aL~~l~eaY 214 (254)
T COG4105 156 KARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE---------------------ALARLEEAY 214 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH---------------------HHHHHHHHH
Confidence 32 122345889999999999999987544333211 234466779
Q ss_pred HhcCChHHHHHHHHHHHHc
Q psy767 480 INKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 480 ~k~g~~~~A~~l~~~m~~~ 498 (902)
...|-.++|.+.-.-+...
T Consensus 215 ~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 215 YALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHhCChHHHHHHHHHHHhc
Confidence 9999999998887766654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.11 E-value=5.5 Score=41.81 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ-----AGLEPSAQTYTKLMC 202 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~ty~~ll~ 202 (902)
..++..+..+|+++.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+......
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 556888889999999999999999887 77899999999999999999999999998865 589999888777666
Q ss_pred H
Q psy767 203 G 203 (902)
Q Consensus 203 a 203 (902)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 6
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.83 E-value=36 Score=36.47 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhccc
Q psy767 523 IDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLST 602 (902)
Q Consensus 523 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~ 602 (902)
+++.+.+++.|.+.|++-+..+|-+-.-. .........+ ..++. +.+ +++.|++.- .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i--~~~~~~~~~~---~~~~r--a~~----iy~~mKk~H------------~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALII--LEEEEKEDYD---EIIQR--AKE----IYKEMKKKH------------P 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHH--HHhcccccHH---HHHHH--HHH----HHHHHHHhC------------c
Confidence 55678889999999999999888554311 2111222332 33333 555 999999886 3
Q ss_pred cc-ccchhhhHHHHHhhh------HHHHHHHHHHHHHHhCCCCC-hHHHHHhhhccCCCCC----CChHHHHHHHHhcCC
Q psy767 603 SI-HGEVNSLYDLMLSFL------DAEVLRILQVAEAEFGVGSN-TETLRDYVLPVLSPPN----QVSGEVFSQLRSVGV 670 (902)
Q Consensus 603 ~i-~p~~~~~~~li~~~~------~~~al~ll~~m~~~~g~~P~-~~t~~~lv~~~~~~~~----~~~~~~~~~l~~~g~ 670 (902)
.+ .++...+..++.... .+.+..+++.+ .+.|+..+ ..-+...+........ ....++.+.+++.|+
T Consensus 135 fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L-~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKL-ADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred cccCccchhHHHHHhcccccHHHHHHHHHHHHHHH-HHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 33 445556666663332 78888888888 78888766 3355555555555222 234568888999999
Q ss_pred CCccchHHHHHHHHHhcCHH-HHHHHHH
Q psy767 671 TIGSITSAYVVHMLRQHNLK-EAALLAK 697 (902)
Q Consensus 671 ~~~~~~~~~l~~~~~~g~~~-~a~~~~~ 697 (902)
++...+++.+--++-.+..+ +..+-+.
T Consensus 214 kik~~~yp~lGlLall~~~~~~~~~~i~ 241 (297)
T PF13170_consen 214 KIKYMHYPTLGLLALLEDPEEKIVEEIK 241 (297)
T ss_pred ccccccccHHHHHHhcCCchHHHHHHHH
Confidence 99998877766664333333 4433333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.77 E-value=28 Score=33.53 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhcccCCCccchh-hHHH--H
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCF-SFQL--T 235 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~-~~~~--~ 235 (902)
..|.+-++ +++.+..++|+.-|.++.+.|..--.+ .---+.......|+-..|...|+++-.....|... ...- .
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 44544444 355666777777777777665432111 11112334556677777777777776655444332 1111 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCC
Q psy767 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNG 297 (902)
Q Consensus 236 ~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p 297 (902)
..++...|.++++....+.+...|-+.-...-.+|--+-.+.|++.+|..+|.++......|
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22233467777777777766655544445555667777788899999999998876544333
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=86.74 E-value=71 Score=37.40 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh-CCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy767 115 EPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD-KTFPI--------SEGVFNALIYGHSQANDMASAEGILTMM 185 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~p--------~~~~yn~Li~~~~~~g~~~~A~~l~~~M 185 (902)
.|....|..+ .......-.++-|+..|-+... .|++. +...-.+=|.+| -|.+++|+++|-+|
T Consensus 689 nPHprLWrll------Ae~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 689 NPHPRLWRLL------AEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDA 760 (1189)
T ss_pred CCchHHHHHH------HHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhcc
Confidence 5777778777 5555555555666655544322 12211 111112223333 48899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHh
Q psy767 186 SQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPS 219 (902)
Q Consensus 186 ~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 219 (902)
.+++ ..|..+.+.|||-.+.++++.
T Consensus 761 drrD---------LAielr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 761 DRRD---------LAIELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred chhh---------hhHHHHHhhhhHHHHHHHHHc
Confidence 7663 235667778888877666653
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=86.65 E-value=5.8 Score=41.50 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=45.4
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHH
Q psy767 170 SQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASA 248 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 248 (902)
.+.+++.+|+..|.+.++. .| |.+-|..=..+|.+.|.++.|.+=.+.....+.. ....|..+..++...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 3445555555555555543 22 3333334444555555555555444444332211 223444455555555555566
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q psy767 249 EGILTMMSQAGLEPSAQTYT 268 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~ 268 (902)
.+.|+..+. +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 555555544 356655553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.46 E-value=46 Score=39.84 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCCCCHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAND-------MASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~-------~~~A~~l~~~M~~~g~~pd~~ 195 (902)
|--|.|+|++++|.++....... .......+-..+..|+...+ -+....-|+...+.....|..
T Consensus 118 Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 118 IYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 67788999999999999655433 34455778888888877532 235555566665553333554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.41 E-value=17 Score=41.29 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=87.4
Q ss_pred HHcCCHHHHHHHHH-HhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q psy767 135 CQDGNIEGATKILE-FMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI 213 (902)
Q Consensus 135 ~~~g~~~~A~~l~~-~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a 213 (902)
.-.|+++.+.++.. .-.-..++ ....+.+++-+-+.|..+.|+.+-.+-..+ .....+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHH
Confidence 44577777665554 11111222 344677777777777777777765433221 2334456666655
Q ss_pred HHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 214 KTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
.++-+. ..+...|..|-....+.|+++-|.+.|.+
T Consensus 338 ~~~a~~-----------------------------------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k---- 372 (443)
T PF04053_consen 338 LEIAKE-----------------------------------------LDDPEKWKQLGDEALRQGNIELAEECYQK---- 372 (443)
T ss_dssp HHHCCC-----------------------------------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHH----
T ss_pred HHHHHh-----------------------------------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHh----
Confidence 554332 34667888888999999999999999887
Q ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 294 LVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 294 ~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
..++..+.-++...|+.+.+..+..+. ...| -+|....++.-.|+++++.+++.+
T Consensus 373 --~~d~~~L~lLy~~~g~~~~L~kl~~~a---------------~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 373 --AKDFSGLLLLYSSTGDREKLSKLAKIA---------------EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --CT-HHHHHHHHHHCT-HHHHHHHHHHH---------------HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --hcCccccHHHHHHhCCHHHHHHHHHHH---------------HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346777777777777766665554432 1111 245556666667777777777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.18 E-value=4.1 Score=44.66 Aligned_cols=151 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCCCCCcCcccccCccccccCCCC-CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 43 VLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELD-VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g-~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
+++|...+....+...+..|+.+|-+... .| +.+++..|+++|..++. |++..|..+|+-=.. .+.-+..--
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-----~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~-~f~d~~~y~ 469 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRK-----EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL-KFPDSTLYK 469 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhc-----cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH-hCCCchHHH
Q ss_pred HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 122 QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS--EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTK 199 (902)
Q Consensus 122 ~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 199 (902)
.-- +..+.+-++-+.|..+|+.-..+ +..+ ...|-.+|.-=..-|++..|..+=+.|.+. .|-..+-..
T Consensus 470 ~ky------l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 470 EKY------LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHH------HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Q ss_pred HHHHHHHcCC
Q psy767 200 LMCGYAKHGD 209 (902)
Q Consensus 200 ll~a~~~~g~ 209 (902)
..+-|+-..+
T Consensus 541 F~Sry~ik~d 550 (660)
T COG5107 541 FTSRYAIKAD 550 (660)
T ss_pred HHHHHhhhcc
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.06 E-value=4.1 Score=32.94 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=40.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 238 LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
++...++++.|.++++.+...+ +.+...|...-..|.+.|++++|.+.|+......
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4455667777777777777664 4566777778888888888888888888765443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=4.2 Score=38.89 Aligned_cols=90 Identities=6% Similarity=-0.059 Sum_probs=69.3
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
.-+-..|++++|..+|..+.-.+ +-+..-|..|-.+|-..+++++|+..|......+. -|...+-..-.++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33457899999999999987766 34556677777888888999999999988766553 24555566678888999999
Q ss_pred HHHHHHHhcccC
Q psy767 212 SIKTKIPSLKPQ 223 (902)
Q Consensus 212 ~a~~l~~~~~~~ 223 (902)
.|...|......
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999988877663
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=85.57 E-value=26 Score=40.35 Aligned_cols=164 Identities=12% Similarity=0.046 Sum_probs=102.4
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHhHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQG-IEPNRVTYQQLISNSKLISKYCQ----DGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
+...+=.|+-+.+++.+.+-.+.+ +. ....--.|+.+...+..++- ..+.+.|.++++.+..+ -|+...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 333344688888888887765532 22 12221222223333444443 56788999999999876 577777765
Q ss_pred HH-HHHHhCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH-HHHHH
Q psy767 165 LI-YGHSQANDMASAEGILTMMSQAGL---EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL-TNLLI 239 (902)
Q Consensus 165 Li-~~~~~~g~~~~A~~l~~~M~~~g~---~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~ 239 (902)
.- +.+...|++++|++.|+....... +.....+--+.-.+.-..+|++|...|..+.+.+.- +...|.. ....+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 54 556678999999999997653211 122334445666688899999999999999885433 2223322 22223
Q ss_pred HhcCCH-------HHHHHHHHHHHH
Q psy767 240 LVSSDM-------ASAEGILTMMSQ 257 (902)
Q Consensus 240 ~~~g~~-------~~A~~l~~~m~~ 257 (902)
...|+. ++|..+|.+...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 446777 788888877664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.40 E-value=36 Score=35.84 Aligned_cols=106 Identities=10% Similarity=-0.025 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHH
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT 235 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~ 235 (902)
|-|...|-.|-..|.+.|+++.|..-|....+.- .+|...+..+..++....+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~------------------------- 206 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQ------------------------- 206 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCC-------------------------
Confidence 4466677777777777777777777777665542 22333444444443332211
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Q psy767 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLV 295 (902)
Q Consensus 236 ~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~ 295 (902)
..-.++..+|+++.... +-|+.+-..|-..+...|++.+|...|+.|.....
T Consensus 207 -------~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 207 -------QMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred -------cccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 11224555666665543 34455555566678888888888888888766543
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=85.24 E-value=9.2 Score=40.45 Aligned_cols=153 Identities=11% Similarity=0.036 Sum_probs=98.6
Q ss_pred HCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH----HHHHHHH
Q psy767 95 DNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN----ALIYGHS 170 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn----~Li~~~~ 170 (902)
-+|..-+|-..++++.+. .+-|...+... =++|...|+.+.-...++.+... ..||...|. ...-++.
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfs------h~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFS------HDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred ccccccHHHHHHHHHHHh-Cchhhhhhhhh------hhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHH
Confidence 357777777788887764 45577777777 78888888888888888877544 123333332 2333445
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCC---ccchhhHHHHHHHHHhcCCHHH
Q psy767 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE---LFLCFSFQLTNLLILVSSDMAS 247 (902)
Q Consensus 171 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~ 247 (902)
.+|-+++|++.-++..+.+ +-|.-.-.++...+--.|+..++.++..+-...-. ..-...|-.....+...+.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 6788888888887776654 34666777777778888888888877665543211 1112222223333344588999
Q ss_pred HHHHHHHHH
Q psy767 248 AEGILTMMS 256 (902)
Q Consensus 248 A~~l~~~m~ 256 (902)
|+.+|+.-.
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999988544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=85.17 E-value=32 Score=31.98 Aligned_cols=57 Identities=14% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
.....+|..+...+.......+++.+...|. .+...++.++..|++... ......+.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 3455788888888999999999999988874 677789999999998643 33444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.45 E-value=7.6 Score=44.15 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
+..+-+.|-.+.|+.+-..-.. =.....+.|+++.|.++-++ ..+...|..|-....+.|++
T Consensus 302 ~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 302 ARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCH
Confidence 5555566666666655433211 11223345555555554332 22455666666666666666
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
+-|.+.|.+... +..+..++...|+.+.-.++.+.....|- +|....++.-.|+.+++.+++.+-
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666666555443 44455555556666666666666665552 566666777778888888777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=84.40 E-value=1.6 Score=50.08 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=26.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||..||.+|.++.++++||||+.++...
T Consensus 333 ~~L~~dP~~R~ta~e~l~hp~f~~~~~~~ 361 (440)
T PTZ00036 333 QFLKYEPLKRLNPIEALADPFFDDLRDPC 361 (440)
T ss_pred HHCCCChhHCcCHHHHhCChhHHhhhccc
Confidence 89999999999999999999999887643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.78 E-value=7.3 Score=40.32 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=13.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
+.....+.|+.++|...|++....
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334455556666666665555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.52 E-value=74 Score=34.80 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
.+...|..|+|+.|+++++.-....
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4444556666666666655554443
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=81.97 E-value=88 Score=34.55 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=40.1
Q ss_pred CCHHHHHHH-HHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHH--HcCChHHHHHHHHHcccCCCCCCCHHH
Q psy767 344 PSAQTYTKL-MCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALA--VSGHGEYIDEIISKIQPGVGYSADAAN 416 (902)
Q Consensus 344 p~~~t~~~L-i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~g~~pd~~t 416 (902)
|.-.+|..| ..++.-.|++++|..+--.+.......-+..++.+.+ -.++.+.|...|++-.+ ..||...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~ 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQK 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhh
Confidence 444444444 3456677787777766544322212222444444433 45667888888888877 7787653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.57 E-value=10 Score=37.22 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ--TYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
..+..+..-|++.|+.+.|++.|.++.+....|... .+-.+|..+...+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457778888888888888888888888765554433 556777888888888877776665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=81.38 E-value=43 Score=30.77 Aligned_cols=136 Identities=14% Similarity=0.170 Sum_probs=78.1
Q ss_pred HcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCC--CHHHHHHHHHHcCCHHHHHHHHH
Q psy767 358 KHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSA--DAANHIYHLINKGQIDAAYRIVN 435 (902)
Q Consensus 358 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p--d~~t~i~~l~~~g~~~~A~~~~~ 435 (902)
-.|.+++..++..+.-.......||.+|--....-+-+-..+.++.+-.-..+.| +..+++..+...|...
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s------- 86 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLS------- 86 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT----------
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchH-------
Confidence 3577777788877754433444467666666666666667777777655444444 2223444444444322
Q ss_pred HHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHH
Q psy767 436 TLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVR 514 (902)
Q Consensus 436 ~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~ 514 (902)
.+.. .+..+.+.|+-+.-.++...+.....+ ++...--+..
T Consensus 87 -----------------------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~---~p~~L~kia~ 128 (161)
T PF09205_consen 87 -----------------------------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEI---NPEFLVKIAN 128 (161)
T ss_dssp -----------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S----HHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCC---CHHHHHHHHH
Confidence 1223 455577888888888888887653322 3445667788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 515 HMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 515 ~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
+|.+.|. ..+|-+++.+.-+.|++
T Consensus 129 Ay~klg~-~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 129 AYKKLGN-TREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT--HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc-hhhHHHHHHHHHHhchH
Confidence 8999998 89999999988888864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0659|consensus | Back alignment and domain information |
|---|
Probab=80.69 E-value=0.91 Score=46.38 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=28.8
Q ss_pred CCCCcchhhhHHHhhcCCCccCCCCCCCccchhhccc
Q psy767 853 LDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEIT 889 (902)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
+.+||-.|++|.|.++||||.+.+...+..+..++.+
T Consensus 265 ~~ynP~~Rita~qaL~~~yf~~~P~pt~~~~lp~p~~ 301 (318)
T KOG0659|consen 265 LTYNPKKRITASQALKHPYFKSLPLPTPPSKLPIPST 301 (318)
T ss_pred hccCchhcccHHHHhcchhhhcCCCCCChhhCcCCcc
Confidence 4678999999999999999999877776444444333
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=80.14 E-value=19 Score=32.88 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=66.8
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHHcC
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA-GLEPSAQ---TYTKLMCGYAKHG 208 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~---ty~~ll~a~~~~g 208 (902)
+++..|+++.|++.|.+....- |-....||.-..++.-.|+.++|++=+++..+. |-+ +.. .|.---..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 5678899999999999877653 556789999999999999999999999988765 322 222 2333334456677
Q ss_pred ChhHHHHHHHhcccCCCc
Q psy767 209 DMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 209 ~~~~a~~l~~~~~~~~~~ 226 (902)
+.+.|..=|+..-+-|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777766554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 5e-13
Identities = 77/443 (17%), Positives = 129/443 (29%), Gaps = 129/443 (29%)
Query: 39 LVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHY-NALLRVYLDNE 97
L +L L ++ W S N+ EL L Y N LL V L N
Sbjct: 199 LEMLQKLLYQIDPNWTSRSD-HSSNIK--LRIHSIQAELRRLLKSKPYENCLL-V-LLN- 252
Query: 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY---CQDGNIEGATKILEFMRDKT 154
+ N+K + + C KIL R K
Sbjct: 253 ---------------------------VQNAKAWNAFNLSC---------KILLTTRFK- 275
Query: 155 FPISEGVFNALI---YGHSQANDMAS------AEGIL---TMMSQAGLEPSAQTYTKL-- 200
V + L H + + + +L L T
Sbjct: 276 -----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 201 -MCG-----------YAKHGDMDSIKTKIPS----LKP--QSELFLCFS-FQL-----TN 236
+ KH + D + T I S L+P ++F S F T
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 237 LLILVSSDMAS--AEGILTMMSQAGL---EPSAQTYT----------KLMCGYAKHG--- 278
LL L+ D+ ++ + + L +P T + KL YA H
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 279 DMDSVRRLLAQSGSSLVNGD---YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEG- 334
D ++ + D Y I H L H E + + F++ F +LE
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLD--FRFLEQK 506
Query: 335 ------PMMSQAGLEPSAQ---TYTKLMCGYAKHGDM--DSIRRLLAQNGSSLVNGDYLD 383
+ + + Q Y +C + ++I L + +L+ Y D
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 384 IIHALAVSG-HGEYIDEIISKIQ 405
++ +A+ +E ++Q
Sbjct: 567 LLR-IALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 5e-11
Identities = 109/695 (15%), Positives = 213/695 (30%), Gaps = 216/695 (31%)
Query: 7 NVSDTATPVGITTEVSEATAEVTTVLGALGAFLVLL------VLLFV---------YLNS 51
+V D + E+ V G L F LL V FV +L S
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 52 KWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLES 111
+E P + + I + R+Y DN+ F+ +++L+
Sbjct: 97 PIKTE---------QRQP------SMMTRMYIEQRD---RLYNDNQ-VFAK-YNVSRLQP 136
Query: 112 QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATK---ILEFMRDKTFPISEGVFNALIY- 167
R +L ++ DG + G+ K L+ + + I+
Sbjct: 137 --YLKLRQALLELRPAKNVLI----DG-VLGSGKTWVALDVCLSYKV---QCKMDFKIFW 186
Query: 168 ---GHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD-MDSIKTKIPSLKPQ 223
+ S E +L M+ + ++ + D +IK +I S++ +
Sbjct: 187 LNLKNCN-----SPETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 224 SELFLCFSFQLTN-LLILVSSDMASAEG-----------ILTMMSQAGLEPSAQTYTKLM 271
L S N LL+L ++ +A+ + T Q SA T T +
Sbjct: 234 LRRLLK-SKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 272 CGYAKHG-DMDSVRRLLAQSGSSLVNGDYLDI-----------IHALAVSGHGEYI---- 315
+ D V+ LL + YLD + +S E I
Sbjct: 291 LDHHSMTLTPDEVKSLLLK---------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 316 -----------DEVSAIVCFVNICFHWLEGPMMSQ-----AGLEPSAQTYTKLMC---GY 356
D+++ I + + LE + + PSA T L+
Sbjct: 342 ATWDNWKHVNCDKLTTI---IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 357 AKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN 416
D+ + L + SLV + ++ Y++ K++ + A
Sbjct: 399 VIKSDVMVVVNKLHK--YSLVEKQPKESTISI----PSIYLEL---KVKL----ENEYAL 445
Query: 417 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHI 476
H +++ Y I ++ + + P Y +HI
Sbjct: 446 HR-SIVDH------YNI----PKTFDSDDLIPP--------------YLDQYF---YSHI 477
Query: 477 -YHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535
+HL N + TL R ++ FL + + + + ++ + L
Sbjct: 478 GHHLKNIEHPERM-----TLFRMVFLD---F---RFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 536 ENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFI-QAEDAACL 594
+ K ++ D +E VN + F+ + E+
Sbjct: 527 LKFY----------KPYICDND-----PKYERLVNA----------ILDFLPKIEENLIC 561
Query: 595 QRITDL-STSIHGEVNSLYDLMLSFLDAEVLRILQ 628
+ TDL ++ E ++++ +A + +Q
Sbjct: 562 SKYTDLLRIALMAEDEAIFE------EAH--KQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 2e-09
Identities = 87/581 (14%), Positives = 170/581 (29%), Gaps = 169/581 (29%)
Query: 381 YLDIIH----ALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNT 436
Y DI+ A + + + ++ I S + +HI +++K + R+ T
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSI-----LSKEEIDHI--IMSKDAVSGTLRLFWT 70
Query: 437 LARSANINGEQLPVG-------GFLV-RHMVKTNQPGVGYSADAANHIYH---LINKGQI 485
L S Q V FL+ + QP S +I L N Q+
Sbjct: 71 L-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQV 125
Query: 486 DAAY---RI--VNTLARSANINGEQLPVGGFLVRH-MV---KTNQPIDKVLA--VCHRLT 534
A Y R+ L ++ +L ++ ++ KT +A VC
Sbjct: 126 FAKYNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKT------WVALDVCL--- 172
Query: 535 DENLHPRAFNLAVL-IKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAAC 593
+ + + + + E + + L I +
Sbjct: 173 SYKVQ-CKMDFKIFWLNL--------KNCNSPETVLEML-------QKLLYQIDPNWTSR 216
Query: 594 LQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRIL------QVAEAEFGVGSNT-ETLRDY 646
+++ IH L L+ S L +L + A F + T R
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRF- 274
Query: 647 VLPVLSPPNQVSGEVFSQLRSVGVTIGSITSAYVVHMLRQHNLKEAALLAKSFRAHYAKV 706
+ +S + + ++ L +K LL K
Sbjct: 275 ----KQVTDFLSAATTTHISLDHHSMT----------LTPDEVKS--LLLK--------- 309
Query: 707 VVRPVLAVSYLRTQDLPS--------LVTVVRAVC-------ENWEKGEEGEKEEEGEEK 751
L R QDLP ++++ +NW K ++
Sbjct: 310 ----YLDC---RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-------KHVNCDKL 355
Query: 752 TAGQLIDMDRIFAGNVLLDIYKATRQDPNVVSHLEQLLNAFVEHA-IPISAFS---SDYI 807
T +I+ L++ +P + L+ F A IP S D I
Sbjct: 356 T--TIIESS--------LNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 808 QNGLGSALTSDISKALGALTSDDLMPQPLQY-VPSMFIPRGQPL--------RCLDKDPL 858
++ + + +L + P+ +PS+++ L +D +
Sbjct: 401 KSDVMVVVNKLHKYSL--VEKQ---PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 859 RRWSCDQLLRHPYFNGYYFE-----VPDEMQYEEITQVSRL 894
+ L PY + Y++ + + E +T +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 7e-09
Identities = 74/652 (11%), Positives = 179/652 (27%), Gaps = 186/652 (28%)
Query: 74 TGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISK 133
TGE Y +L V+ D F+ + + ++ + ++S ++
Sbjct: 11 TGEHQY-----QYKDILSVFED--------AFVDNFDCKDVQD---MPKSILSKEEIDHI 54
Query: 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNALI---YG------HSQANDMASAEGILTM 184
+ G ++ + K + + ++ Y ++ S + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYI 113
Query: 185 MSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLC--FSFQLTNLLILVS 242
+ L Q + K + ++ + L+P + + T + + V
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQP--YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 243 SDMASAEGILTMMS--------------QAGLEPSAQTYTKLMCGYAKHGDM-------- 280
+ M + LE + ++ + D
Sbjct: 172 LS----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 281 ----DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEV--SAIVCFVNI-C----- 328
+RRLL Y + L V + V + N+ C
Sbjct: 228 HSIQAELRRLLKSK-------PY---ENCLLV------LLNVQNAKAWNAFNLSCKILLT 271
Query: 329 ------FHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYL 382
+L + L+ + T T D ++ LL + YL
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTP-----------DEVKSLLLK---------YL 311
Query: 383 DI-----------IHALAVSGHGEYIDEIISKIQPGVGYSADAANHI----YHLINKGQI 427
D + +S E I + ++ + D I +++ +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 428 DAAYRIVNTLARSANI--------------NGEQLPVGGFLVRHMVKTNQPGVGYSADAA 473
+ ++ SA+I + + V +V+ S
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--- 428
Query: 474 NHIYHLINKGQIDAAY----RIVN--TLARSANINGEQLPVG-----GFLVRHMVKTNQP 522
+L K +++ Y IV+ + ++ + + P + H+
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH- 486
Query: 523 IDKVLAVCHRLTDENLHPRAF-NLAVL---IKAHVLKEDYTGAVETFEYCVNQFRATPWK 578
+++ L F + L I+ + +G++ + Q +
Sbjct: 487 PERM----------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT---LQQLK----- 528
Query: 579 GELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLMLSFLDAEVLRILQVA 630
K +I D + + + + +L ++ +L++A
Sbjct: 529 --FYKPYICDNDPKYERLVNAILDFLPKIEENLI-------CSKYTDLLRIA 571
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 5e-09
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 130 LISKYCQDGNIEGATKILEFMRD---KTFPISEGVFNALIYGHSQANDMASAEGILTMMS 186
+ A +L K ++ ++NA++ G ++ +L M+
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 187 QAGLEPSAQTYTKLMCGYAKHGDMD 211
AGL P +Y + +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDA 217
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 1e-08
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 4/151 (2%)
Query: 143 ATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202
A + + R E L+ + + SQA L Q
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 203 GYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS---DMASAEGILTMMSQAG 259
+ + Q + + + N ++L + +L M+ AG
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 260 LEPSAQTYTKLMCGYAKHG-DMDSVRRLLAQ 289
L P +Y + + D ++ R L Q
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 6e-07
Identities = 22/135 (16%), Positives = 33/135 (24%), Gaps = 22/135 (16%)
Query: 244 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI- 302
+ + SQA L Q + LL L +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 303 -----IHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYA 357
+ A G + L M+ AGL P +Y +
Sbjct: 167 MYNAVMLGWARQGA-------------FKELVYVLF--MVKDAGLTPDLLSYAAALQCMG 211
Query: 358 KHG-DMDSIRRLLAQ 371
+ D +I R L Q
Sbjct: 212 RQDQDAGTIERCLEQ 226
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 819 ISKALGALTSDDLMPQP--LQYVPSMFIPRGQPL-------------------RCLDKDP 857
I K LG L QY + IP + + CL DP
Sbjct: 215 IRKTLGDLI-PRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDP 273
Query: 858 LRRWSCDQLLRHPYFNGYYFEVPDEMQYEE 887
R +C+QLL HPYF ++++
Sbjct: 274 TERLTCEQLLHHPYFENIREIEDLAKEHDK 303
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
CL +DP +R S +LL HPY V +
Sbjct: 275 CCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAK 308
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
CL +DP +R S +LL HPY V +
Sbjct: 303 CCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAK 336
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQ 884
CL +DP +R S +LL HPY V +
Sbjct: 256 CCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAK 289
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
+CL DP +R C +LL H +F
Sbjct: 289 KCLHIDPDKRPFCAELLHHDFFQ 311
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPD 881
+CL+ DP R + Q LRHP+ + P
Sbjct: 391 QCLEWDPAVRMTPGQALRHPWLRRRLPKPPT 421
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 902 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.86 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.76 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.74 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.73 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.63 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.59 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.58 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.58 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.57 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.52 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.51 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.49 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.48 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.47 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.47 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.45 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.42 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.42 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.42 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.39 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.38 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.35 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.35 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.31 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.25 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.22 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.2 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.17 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.16 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.15 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.14 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.12 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.1 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.1 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.09 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.07 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.06 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.05 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.05 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.0 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.0 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.95 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.91 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.91 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.89 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.89 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.87 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.87 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.84 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.82 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.81 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.76 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.76 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.75 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.75 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.73 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.72 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.72 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.69 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.62 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.61 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.59 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.54 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.52 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.52 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.5 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.48 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.48 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.47 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.4 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.22 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.13 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.03 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.0 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.9 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.78 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.74 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.69 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.67 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.49 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.45 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.39 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.35 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.34 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.33 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.31 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.23 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.21 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.21 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.14 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.09 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.08 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.05 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.01 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.98 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.88 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.83 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.82 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.8 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.76 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.75 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.7 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.68 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.5 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 96.48 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.31 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.26 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.22 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 96.2 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 95.93 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 95.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 95.89 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.86 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 95.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 95.56 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 95.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 95.38 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 95.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 95.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 94.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 94.71 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 94.34 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.26 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 93.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 93.74 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 93.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 93.07 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 92.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 92.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 92.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 91.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 90.79 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 89.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 89.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 88.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 88.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 87.09 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 87.01 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 85.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 84.9 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 84.55 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 84.26 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 83.94 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 83.34 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 82.9 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 81.04 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 80.55 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 80.5 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 80.2 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=301.89 Aligned_cols=451 Identities=11% Similarity=-0.035 Sum_probs=344.9
Q ss_pred ccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHH
Q psy767 53 WCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLIS 132 (902)
Q Consensus 53 ~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~ 132 (902)
+.+.|.+..++..|..++. +++..|+.++..|.+.|++++|..+|++|.. ..|+..++..+ +.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l------~~ 125 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL---------SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWL------AQ 125 (597)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHH------HH
T ss_pred ccccCccCCCCCccccchH---------HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHH------HH
Confidence 4556777777777777776 7899999999999999999999999999984 56788889888 99
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HC--------------CCCCCHHHH
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMS-QA--------------GLEPSAQTY 197 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~-~~--------------g~~pd~~ty 197 (902)
+|.+.|++++|..+|+.+... +++..+|+.++.+|.+.|++++|+++|+++. .. |..++..+|
T Consensus 126 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 126 VYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC 203 (597)
T ss_dssp HHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHH
Confidence 999999999999999988643 6788999999999999999999999999532 21 233458899
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHH--------------------------------------HHHH
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT--------------------------------------NLLI 239 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~ 239 (902)
+.++.+|.+.|++++|.++|+++...++... ..+..+ ...+
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVDAKCY-EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCchhh-HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543321 111111 2223
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHH
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVS 319 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~ 319 (902)
...|++++|.++|+++... +++..+|+.++.+|.+.|++++|+++|+++.
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------------------- 332 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKIL---------------------------- 332 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------
T ss_pred cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------------------
Confidence 4578889999999888765 5889999999999999999999999998742
Q ss_pred HHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC-cccHHHHHHHHHHcCChHHH
Q psy767 320 AIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNG-SSLV-NGDYLDIIHALAVSGHGEYI 397 (902)
Q Consensus 320 ~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~-~~~~-~~~~~~li~~~~~~g~~~~A 397 (902)
+.+ +.+..+|+.++.+|.+.|++++|..+|+++. ..+. ...|+.++..|.+.|++++|
T Consensus 333 -------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 333 -------------------EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp -------------------HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHH
Confidence 222 2266788999999999999999999999863 2233 23488899999999999999
Q ss_pred HHHHHHcccCCCCCCCHH----HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchH
Q psy767 398 DEIISKIQPGVGYSADAA----NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAA 473 (902)
Q Consensus 398 ~~l~~~m~~~~g~~pd~~----t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 473 (902)
.++|+++.+ ..|+.. .+...+.+.|++++|.++|+++.+... ... ....
T Consensus 393 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~---------------------~~~~ 445 (597)
T 2xpi_A 393 RRYFSKSST---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---GTH---------------------LPYL 445 (597)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT---TCS---------------------HHHH
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cch---------------------HHHH
Confidence 999999987 445433 256778899999999999999886522 111 0234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--hhhHHH
Q psy767 474 NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE----NLHPR--AFNLAV 547 (902)
Q Consensus 474 ~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~----g~~Pd--~~t~~~ 547 (902)
.+...|.+.|++++|.++|+.+.... +.++.+|+.++..|.+.|+ +++|+++|++|.+. +..|+ ..+|..
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 47777999999999999999998763 2356789999999999999 99999999999876 78898 789999
Q ss_pred HHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhhHHHhhhhhhhcccccccchhhhHHHH----HhhhHHHH
Q psy767 548 LIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAEDAACLQRITDLSTSIHGEVNSLYDLM----LSFLDAEV 623 (902)
Q Consensus 548 ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li----~~~~~~~a 623 (902)
+..++ + +.|+.++ |.. +|+++.+.+ +-+ +..+..+. ..|.+++|
T Consensus 522 l~~~~-~---~~g~~~~---------A~~----~~~~~~~~~-------------p~~--~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 522 LGHAY-R---KLKMYDA---------AID----ALNQGLLLS-------------TND--ANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHH-H---HTTCHHH---------HHH----HHHHHHHHS-------------SCC--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH-H---HhcCHHH---------HHH----HHHHHHHhC-------------CCC--hHHHHHHHHHHHHhCCHHHH
Confidence 99888 7 8999999 888 888887764 112 33443333 34449999
Q ss_pred HHHHHHHHHHhCCCCC
Q psy767 624 LRILQVAEAEFGVGSN 639 (902)
Q Consensus 624 l~ll~~m~~~~g~~P~ 639 (902)
++.++++ .+. .|+
T Consensus 570 ~~~~~~~-l~~--~p~ 582 (597)
T 2xpi_A 570 ITHLHES-LAI--SPN 582 (597)
T ss_dssp HHHHHHH-HHH--CTT
T ss_pred HHHHHHH-Hhc--CCC
Confidence 9999999 443 455
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=300.17 Aligned_cols=439 Identities=9% Similarity=-0.031 Sum_probs=357.6
Q ss_pred HHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHH
Q psy767 41 LLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT 120 (902)
Q Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 120 (902)
.+...++.++..|.+.|++++|..+|+.+.. ..|+..+|+.++.+|.+.|++++|..+|+.+.. ..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 152 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSAC 152 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhH
Confidence 4677888999999999999999999999975 457889999999999999999999999998864 3678999
Q ss_pred HHHHHHhHHHHHHHHHcCCHHHHHHHHHHh-hhC--------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy767 121 YQQLISNSKLISKYCQDGNIEGATKILEFM-RDK--------------TFPISEGVFNALIYGHSQANDMASAEGILTMM 185 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~~~~A~~l~~~m-~~~--------------~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M 185 (902)
++.+ +.+|.+.|++++|.++|+++ +.. +.+++..+|+.++.+|.+.|++++|+++|++|
T Consensus 153 ~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 153 RYLA------AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHH------HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999 99999999999999999943 333 34557899999999999999999999999999
Q ss_pred HHCCCCCCHHHHHH--------------------------------------HHHHHHHcCChhHHHHHHHhcccCCCcc
Q psy767 186 SQAGLEPSAQTYTK--------------------------------------LMCGYAKHGDMDSIKTKIPSLKPQSELF 227 (902)
Q Consensus 186 ~~~g~~pd~~ty~~--------------------------------------ll~a~~~~g~~~~a~~l~~~~~~~~~~~ 227 (902)
.+.+.. +...+.. ++..|.+.|++++|.++|+.+... ..
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 886422 2333332 355667889999999999999876 46
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy767 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALA 307 (902)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~ 307 (902)
+...+..+...+...|++++|..+|+++...+ +.+..+|+.++.+|.+.|++++|.++|+++..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 367 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--------------- 367 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---------------
Confidence 77888899999999999999999999999876 45788999999999999999999999997421
Q ss_pred HcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC-cccHHHHH
Q psy767 308 VSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNG-SSLV-NGDYLDII 385 (902)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~-~~~~-~~~~~~li 385 (902)
..+.+..+|+.++.+|.+.|++++|.++|+++. ..|. ...|+.++
T Consensus 368 ---------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 414 (597)
T 2xpi_A 368 ---------------------------------RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414 (597)
T ss_dssp ---------------------------------HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---------------------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 123468899999999999999999999999853 2333 33599999
Q ss_pred HHHHHcCChHHHHHHHHHcccCCCCCCCHH-HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCC
Q psy767 386 HALAVSGHGEYIDEIISKIQPGVGYSADAA-NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQP 464 (902)
Q Consensus 386 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~ 464 (902)
.+|.+.|++++|.++|+++.+...-.+..+ .+...|.+.|++++|.++|+++.+.....+.
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------ 476 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL------------------ 476 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------------
Confidence 999999999999999999987221122222 2567788999999999999999875322111
Q ss_pred CCccccchHHHHHHHHhcCChHHHHHHHHHHHHcc----CCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q psy767 465 GVGYSADAANHIYHLINKGQIDAAYRIVNTLARSA----NINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHP 540 (902)
Q Consensus 465 ~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~----~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~P 540 (902)
...++...|.+.|++++|.++|+.+.... ..+.....+|+.+...|.+.|+ +++|+.+++++.+.+ ..
T Consensus 477 ------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 477 ------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS-SC
T ss_pred ------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhC-CC
Confidence 23457777999999999999999987763 2221125689999999999999 999999999988764 33
Q ss_pred ChhhHHHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHHHHHHhh
Q psy767 541 RAFNLAVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLKRFIQAE 589 (902)
Q Consensus 541 d~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g 589 (902)
+..+|..+..++ . ..|+.++ |.. +|+++.+..
T Consensus 549 ~~~~~~~l~~~~-~---~~g~~~~---------A~~----~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVY-L---HKKIPGL---------AIT----HLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHH-H---HTTCHHH---------HHH----HHHHHHHHC
T ss_pred ChHHHHHHHHHH-H---HhCCHHH---------HHH----HHHHHHhcC
Confidence 788899998887 7 8899999 877 777776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=274.66 Aligned_cols=195 Identities=14% Similarity=0.187 Sum_probs=178.0
Q ss_pred CCCCCC-HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCC---------HHHHHHH
Q psy767 77 LDVPLD-ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN---------IEGATKI 146 (902)
Q Consensus 77 ~g~~pd-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~---------~~~A~~l 146 (902)
.+..+. ...++.+|.+|++.|++++|+++|++|.+.|+.||.+||++| |.+|++.+. ++.|.++
T Consensus 19 k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~L------i~~c~~~~~~~~~~~~~~l~~A~~l 92 (501)
T 4g26_A 19 KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVL------LYVCSLAEAATESSPNPGLSRGFDI 92 (501)
T ss_dssp -----CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHH------HHHHTTCCCCSSSSCCHHHHHHHHH
T ss_pred hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH------HHHHHhCCchhhhhhcchHHHHHHH
Confidence 454443 346899999999999999999999999999999999999999 999998764 7899999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 147 LEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 147 ~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
|++|...|+.||..|||+||++|++.|++++|+++|++|.+.|+.||..||++||.+|++.|+++
T Consensus 93 f~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~--------------- 157 (501)
T 4g26_A 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD--------------- 157 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH---------------
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHH
Q psy767 227 FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHAL 306 (902)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l 306 (902)
+|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus 158 --------------------~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~----------------- 200 (501)
T 4g26_A 158 --------------------KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR----------------- 200 (501)
T ss_dssp --------------------HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred --------------------HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH-----------------
Confidence 5666777888899999999999999999999999999999997
Q ss_pred HHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHc
Q psy767 307 AVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH 359 (902)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~ 359 (902)
|.+.|+.|+..||+.++..|+..
T Consensus 201 ------------------------------Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 201 ------------------------------LRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp ------------------------------HHHHTSSBCHHHHHHHHHHHHSH
T ss_pred ------------------------------HHHhCCCcCHHHHHHHHHHHhcC
Confidence 77888999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=270.52 Aligned_cols=188 Identities=14% Similarity=0.110 Sum_probs=176.7
Q ss_pred HHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCC---------chHHHHHHHHHHHCCC
Q psy767 44 LLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEH---------TFSPTDFLAKLESQGI 114 (902)
Q Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~---------~~~A~~l~~~M~~~g~ 114 (902)
.+++.++++||+.|++++|..+|++|.. .|++||+.+||+||.+|++.+. ++.|.++|++|...|+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~-----~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARR-----NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-----HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 3566789999999999999999999997 7999999999999999998765 5779999999999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 115 EPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
.||..||+++ |.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 102 ~Pd~~tyn~l------I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 102 VPNEATFTNG------ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp CCCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred CCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 274 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~ 274 (902)
.||++||.+|++.|+++ +|.+++++|.+.|+.|+..||+.++..|
T Consensus 176 ~ty~~Li~~~~~~g~~d-----------------------------------~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 176 PELAALLKVSMDTKNAD-----------------------------------KVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHHTTCHH-----------------------------------HHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHH-----------------------------------HHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999988 5666777788888999999999999999
Q ss_pred HHc
Q psy767 275 AKH 277 (902)
Q Consensus 275 ~~~ 277 (902)
+..
T Consensus 221 ~s~ 223 (501)
T 4g26_A 221 KSE 223 (501)
T ss_dssp HSH
T ss_pred hcC
Confidence 864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-19 Score=196.81 Aligned_cols=367 Identities=13% Similarity=0.068 Sum_probs=290.3
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~ 167 (902)
+...+.+.|++++|.+.+..+.+. .| +...+..+ ...+...|++++|...++...... +.+..+|+.+..
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l------~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~ 75 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLL------SSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 345677889999999999998865 34 44555556 778889999999999999887765 678899999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHH
Q psy767 168 GHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMA 246 (902)
Q Consensus 168 ~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 246 (902)
+|.+.|++++|+..|+++.+. .|+ ..+|..+..++...|++++|.+.|+.+....+. ....+..+..++...|+++
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHH
Confidence 999999999999999999886 454 557999999999999999999999998775432 3345566777778899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhh
Q psy767 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVN 326 (902)
Q Consensus 247 ~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~ 326 (902)
+|..+|+++.... +.+..+|+.+...|.+.|++++|...|+++...
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------------- 198 (388)
T 1w3b_A 153 EAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------------------------------- 198 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------------------
Confidence 9999999998764 456889999999999999999999999974221
Q ss_pred hhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHc
Q psy767 327 ICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKI 404 (902)
Q Consensus 327 ~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m 404 (902)
. +-+...|..+...|...|++++|...|++. ...|..+ .|..+...+...|++++|.+.|+++
T Consensus 199 --------------~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 199 --------------D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp --------------C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 224667888889999999999999999873 3344433 3788999999999999999999999
Q ss_pred ccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHH
Q psy767 405 QPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLI 480 (902)
Q Consensus 405 ~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~ 480 (902)
.+ ..|+... +...+.+.|++++|...|+++.+.. |..+. ...++...+.
T Consensus 264 l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~---------------------~~~~l~~~~~ 316 (388)
T 1w3b_A 264 IE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHAD---------------------SLNNLANIKR 316 (388)
T ss_dssp HH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHH---------------------HHHHHHHHHH
T ss_pred Hh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHH---------------------HHHHHHHHHH
Confidence 88 4554332 4556779999999999999988752 22110 2344666789
Q ss_pred hcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHH
Q psy767 481 NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR-AFNLAVLI 549 (902)
Q Consensus 481 k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll 549 (902)
+.|++++|...++.+.... |....++..+...+.+.|+ +++|+..|+++.+ +.|+ ...|..+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~--~~p~~~~a~~~lg 380 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGK-LQEALMHYKEAIR--ISPTFADAYSNMG 380 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCCHHHHHhHH
Confidence 9999999999999998752 3356788999999999999 9999999999886 3564 33444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-19 Score=197.99 Aligned_cols=371 Identities=13% Similarity=0.061 Sum_probs=281.2
Q ss_pred ccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHH
Q psy767 53 WCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLIS 132 (902)
Q Consensus 53 ~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~ 132 (902)
+.+.|++++|...+..+.. ..+.+...+..+...+...|++++|..+++...+.. +.+..+|..+ ..
T Consensus 9 ~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~l------g~ 75 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNL------GN 75 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HH
T ss_pred HHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHH------HH
Confidence 3456777777777766655 123345667777777888999999999998877643 4467788888 88
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChh
Q psy767 133 KYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~ 211 (902)
.|.+.|++++|...|+.+.... |.+..+|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...|...|+++
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHH
Confidence 9999999999999999887754 445667889999999999999999999998876 354 446667777888889999
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|.+.|+.+....+ .....+..+..++...|++++|...|+++.+.+ +.+...|..+...+...|++++|+..|++..
T Consensus 153 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 153 EAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988876432 234566777778888999999999999988764 4567788889999999999999999988631
Q ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy767 292 SSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLA 370 (902)
Q Consensus 292 ~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~ 370 (902)
. +.| +..++..+..+|.+.|++++|...|+
T Consensus 231 ~-------------------------------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 231 S-------------------------------------------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp H-------------------------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred h-------------------------------------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 123 56788889999999999999999998
Q ss_pred Hc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCC
Q psy767 371 QN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANIN 444 (902)
Q Consensus 371 ~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~ 444 (902)
++ ...|..+ .|..+...+.+.|++++|.+.|+++.+ ..|+... +...+...|++++|...++++.+. .
T Consensus 262 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~ 335 (388)
T 1w3b_A 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---F 335 (388)
T ss_dssp HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS---C
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C
Confidence 84 3344433 388899999999999999999999987 4454432 455567889999999999988764 2
Q ss_pred CCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcC
Q psy767 445 GEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTN 520 (902)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g 520 (902)
|... ...+++...|.+.|++++|...|+.+... .|.....|..+...+...|
T Consensus 336 p~~~---------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 336 PEFA---------------------AAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCH---------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTC
T ss_pred CCcH---------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHhHHHHHHHcc
Confidence 2211 02345777799999999999999999875 2334566776666665544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-16 Score=180.29 Aligned_cols=402 Identities=11% Similarity=0.023 Sum_probs=283.0
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|-.....+.+.|++++|...|+++.+.. |+..+|..+ ..+|.+.|++++|...|+.+.+.+ |.+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNL------SACYVSVGDLKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhH------HHHHHHHhhHHHHHHHHHHHhccC-hHHHHHH
Confidence 4567778888999999999999999998764 788888888 999999999999999999988765 5677889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH------------------------
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIP------------------------ 218 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~------------------------ 218 (902)
..+..+|.+.|++++|...|+.+...+. ++......++..+........+.+.+.
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 9999999999999999999999988752 344444444444333222222221111
Q ss_pred --------------hcccCC------CccchhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CC
Q psy767 219 --------------SLKPQS------ELFLCFSFQLTNLLILV---SSDMASAEGILTMMSQ-----AGL--------EP 262 (902)
Q Consensus 219 --------------~~~~~~------~~~~~~~~~~~~~~~~~---~g~~~~A~~l~~~m~~-----~g~--------~p 262 (902)
...... .+.+...+......+.. .|+++.|..+|+++.. ..- +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 111000 01112222222332333 7999999999999987 311 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCC
Q psy767 263 SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL 342 (902)
Q Consensus 263 d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~ 342 (902)
+..+|..+...|...|++++|...|+++. ...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-----------------------------------------------~~~- 267 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAI-----------------------------------------------ELF- 267 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHH-----------------------------------------------HHC-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------------------------hhC-
Confidence 35678888999999999999999998732 221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH---H-
Q psy767 343 EPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA---N- 416 (902)
Q Consensus 343 ~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t- 416 (902)
|+..+|..+..+|...|++++|...|++. ...+..+ .|..+...+...|++++|.+.|++... ..|+.. .
T Consensus 268 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~ 343 (514)
T 2gw1_A 268 -PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE---LDPENIFPYIQ 343 (514)
T ss_dssp -CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH---TCSSCSHHHHH
T ss_pred -ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hChhhHHHHHH
Confidence 23777888888999999999999999873 3333333 377888889999999999999999877 344322 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHH
Q psy767 417 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLA 496 (902)
Q Consensus 417 ~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~ 496 (902)
+...+...|++++|..+++.+.+.....+. ..+.+...|.+.|++++|...++.+.
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------------~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKFPEAPE------------------------VPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHSTTCSH------------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcccCHH------------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344456889999999999988775222111 23446666889999999999998887
Q ss_pred HccCCCCCc---cchHHHHHHHHHH---cCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhh
Q psy767 497 RSANINGEQ---LPVGGFLVRHMVK---TNQPIDKVLAVCHRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVN 570 (902)
Q Consensus 497 ~~~~~~~~~---~~~~n~li~~~~~---~g~~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~ 570 (902)
......+.. ...+..+...+.. .|+ +++|+..+++..+.. ..+...+..+..++ . ..|+.++
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~la~~~-~---~~g~~~~------ 467 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKASKLD-PRSEQAKIGLAQMK-L---QQEDIDE------ 467 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-H---HTTCHHH------
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHHHHhC-cccHHHHHHHHHHH-H---HhcCHHH------
Confidence 654322111 2378888888888 888 999999999977653 22455666666665 5 7888888
Q ss_pred hccCcchHHHHHHHHHHhh
Q psy767 571 QFRATPWKGELLKRFIQAE 589 (902)
Q Consensus 571 ~~~a~~~~~~ll~~m~~~g 589 (902)
|.. .|+...+..
T Consensus 468 ---A~~----~~~~a~~~~ 479 (514)
T 2gw1_A 468 ---AIT----LFEESADLA 479 (514)
T ss_dssp ---HHH----HHHHHHHHC
T ss_pred ---HHH----HHHHHHHhc
Confidence 777 666666553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-16 Score=176.61 Aligned_cols=307 Identities=11% Similarity=0.032 Sum_probs=216.9
Q ss_pred HHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHH
Q psy767 41 LLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT 120 (902)
Q Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 120 (902)
.+...+..+...+.+.|++++|...|+.+.. ..+.+...|..+...|...|++++|...|+++.+.+. .+..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 96 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAA 96 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHH
Confidence 4555666677777777888888888777765 1334677777788888888888888888887776542 24566
Q ss_pred HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHH------------HHhCCCHHHHHHHHHHH
Q psy767 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE---GVFNALIYG------------HSQANDMASAEGILTMM 185 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~yn~Li~~------------~~~~g~~~~A~~l~~~M 185 (902)
+..+ ..+|.+.|++++|...|+.+...+ +.+. ..|..++.. +.+.|++++|+.+|+++
T Consensus 97 ~~~l------~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 97 RLQR------GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp HHHH------HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH------HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666 777788888888888888777654 3333 555555433 77778888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 186 SQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQ 265 (902)
Q Consensus 186 ~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 265 (902)
.+.. ..+..++..+..+|...|++++|...|+.+..... .+...+..+..++...|++++|...|+++.... +.+..
T Consensus 170 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 246 (450)
T 2y4t_A 170 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 246 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHH
Confidence 7653 23566777777788888888888877777765322 234556666666777778888888777777542 33344
Q ss_pred HHHHH------------HHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccc
Q psy767 266 TYTKL------------MCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLE 333 (902)
Q Consensus 266 ty~~L------------I~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (902)
.+..+ ...|.+.|++++|...|+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----------------------------------------- 285 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----------------------------------------- 285 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------------
Confidence 44444 6777777777777777776321
Q ss_pred cchHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 334 GPMMSQAGLEPS-----AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVN-GDYLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 334 ~~~m~~~g~~p~-----~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
+.|+ ..+|..+..+|.+.|++++|...+++. ...|.. ..|..+..+|...|++++|.+.|+++.+
T Consensus 286 --------~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 286 --------TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp --------HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --------cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1232 457888999999999999999999984 334433 3488999999999999999999999988
Q ss_pred CCCCCCCHHH
Q psy767 407 GVGYSADAAN 416 (902)
Q Consensus 407 ~~g~~pd~~t 416 (902)
+.|+...
T Consensus 358 ---~~p~~~~ 364 (450)
T 2y4t_A 358 ---HNENDQQ 364 (450)
T ss_dssp ---TSSSCHH
T ss_pred ---hCcchHH
Confidence 6776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-15 Score=170.58 Aligned_cols=335 Identities=10% Similarity=0.028 Sum_probs=224.9
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.+...|..+...|.+.|++++|..+|+++.+.. +.+..+|..+ ..+|...|++++|...|+.+.+.+ +.+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 95 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRR------ATVFLAMGKSKAALPDLTKVIQLK-MDFTA 95 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHH------HHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 466778899999999999999999999988753 3367778888 889999999999999999988765 55678
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSA----QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
.|..+..+|.+.|++++|...|+++.+. .|+. .++..+...+...+.+. ..
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~a 150 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRS-----------------------QA 150 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH-----------------------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHH-----------------------HH
Confidence 8999999999999999999999999876 4543 55666655543322222 23
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
..+...|++++|...|+.+.... +.+..++..+...|.+.|++++|+++|+++...
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------- 206 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL----------------------- 206 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------
Confidence 33445677778888888777653 456778888888888888888888888863211
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc-HHHHHHHHHHcCCh
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-YLDIIHALAVSGHG 394 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~~li~~~~~~g~~ 394 (902)
.+.+..+|..+..+|...|++++|...|+++ ...|..+. +..+ ..+.
T Consensus 207 -------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~-~~~~----- 255 (450)
T 2y4t_A 207 -------------------------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY-KQVK----- 255 (450)
T ss_dssp -------------------------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHH-----
T ss_pred -------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH-HHHH-----
Confidence 1234667777777777777777777777763 22222222 2222 0000
Q ss_pred HHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH
Q psy767 395 EYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN 474 (902)
Q Consensus 395 ~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 474 (902)
... ........+.+.|++++|..+|+.+.+.. |..+.. .. ....+
T Consensus 256 -~~~--------------~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~---~~--------------~~~~~ 300 (450)
T 2y4t_A 256 -KLN--------------KLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEY---TV--------------RSKER 300 (450)
T ss_dssp -HHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHH---HH--------------HHHHH
T ss_pred -HHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHH---HH--------------HHHHH
Confidence 000 00001233445555555555555554421 111000 00 01234
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhh
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFN 544 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t 544 (902)
+...+.+.|++++|...++.+.... +....+|..+...|...|+ +++|+..++++.+ +.|+...
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME---PDNVNALKDRAEAYLIEEM-YDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TSSSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH--hCcchHH
Confidence 5666888999999999999887652 2345788899999999999 9999999999877 4566433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=181.36 Aligned_cols=413 Identities=10% Similarity=0.011 Sum_probs=303.0
Q ss_pred HHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHH
Q psy767 43 VLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQ 122 (902)
Q Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 122 (902)
+-.+......+.+.|++++|...|..+.. ..|+...|..+..+|.+.|++++|...|+++.+.. +.+..+|.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 77 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALE-------LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh-------cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHH
Confidence 33455667778889999999999999998 33799999999999999999999999999998764 23567788
Q ss_pred HHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------------
Q psy767 123 QLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGL------------ 190 (902)
Q Consensus 123 ~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~------------ 190 (902)
.+ ..+|.+.|++++|...|+.+...+ +++......++..+.+......+.+.+..+...+.
T Consensus 78 ~l------~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 78 RR------ASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp HH------HHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HH------HHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 88 999999999999999999998876 55666666666655554444443333322211110
Q ss_pred -------C------------------------CC-HHHHHHHHHHHHH---cCChhHHHHHHHhccc-----C--CC---
Q psy767 191 -------E------------------------PS-AQTYTKLMCGYAK---HGDMDSIKTKIPSLKP-----Q--SE--- 225 (902)
Q Consensus 191 -------~------------------------pd-~~ty~~ll~a~~~---~g~~~~a~~l~~~~~~-----~--~~--- 225 (902)
. |+ ...+......+.. .|++++|...|+.+.. . ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 1 11 3334444444443 8999999999998876 3 11
Q ss_pred ---ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHH
Q psy767 226 ---LFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDI 302 (902)
Q Consensus 226 ---~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl 302 (902)
......+..+...+...|+++.|..+|+.+.... |+..+|..+...|...|++++|...|++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------- 299 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--------- 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT---------
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc---------
Confidence 2234455666677778999999999999998875 44888999999999999999999999874321
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCc-cc
Q psy767 303 IHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVN-GD 380 (902)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~-~~ 380 (902)
.+.+..+|..+...|...|++++|...|++. ...|.. ..
T Consensus 300 ---------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 340 (514)
T 2gw1_A 300 ---------------------------------------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340 (514)
T ss_dssp ---------------------------------------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH
T ss_pred ---------------------------------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH
Confidence 1224567888999999999999999999984 333333 33
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhh
Q psy767 381 YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMV 459 (902)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~ 459 (902)
|..+...+...|++++|.+.++++.....-.+..+. +...+...|++++|...++.+.+...-.+....
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------- 410 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------- 410 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH----------
Confidence 788889999999999999999998873222333332 455667999999999999998775322221100
Q ss_pred hcCCCCCccccchHHHHHHHHh---cCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 460 KTNQPGVGYSADAANHIYHLIN---KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 460 ~~~~~~~g~~~~~~~li~~~~k---~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
.....+.+...|.+ .|++++|...|+.+.... +....++..+...+.+.|+ +++|+..|++..+.
T Consensus 411 --------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 411 --------GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQED-IDEAITLFEESADL 478 (514)
T ss_dssp --------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh
Confidence 00023446666888 999999999999988763 3356788899999999999 99999999998775
Q ss_pred CCCCChhh
Q psy767 537 NLHPRAFN 544 (902)
Q Consensus 537 g~~Pd~~t 544 (902)
.|+...
T Consensus 479 --~~~~~~ 484 (514)
T 2gw1_A 479 --ARTMEE 484 (514)
T ss_dssp --CSSHHH
T ss_pred --ccccHH
Confidence 455433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-18 Score=198.41 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHH---CCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLES---QGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~---~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
-..+||++|++|++.|++++|.++|++|.+ .|+.||.+|||+| |++||+.|++++|.++|++|.+.|+.||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtL------I~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV------MLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHH------HHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 346899999999999999999999988864 5899999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccC-CCccchhhHHHHH
Q psy767 159 EGVFNALIYGHSQANDM-ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ-SELFLCFSFQLTN 236 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-~~~~~~~~~~~~~ 236 (902)
.+|||+||+++|+.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+-++.+.++...+... ...+...+...+.
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 99999999999999984 789999999999999999999999999888765555444443333322 1112244555666
Q ss_pred HHHHhcC
Q psy767 237 LLILVSS 243 (902)
Q Consensus 237 ~~~~~~g 243 (902)
.++...+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666533
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-14 Score=163.69 Aligned_cols=435 Identities=11% Similarity=0.008 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH
Q psy767 40 VLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV 119 (902)
Q Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 119 (902)
...+-.+..+...+.+.|++++|...|..+.. -.+.+...|..+...|.+.|++++|++.|+++.+.. +.+..
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 94 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE------LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHH
Confidence 33566677777788888888888888888877 123466777778888888888888888888877653 22556
Q ss_pred HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCC
Q psy767 120 TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA------GLEPS 193 (902)
Q Consensus 120 t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~------g~~pd 193 (902)
++..+ ..++...|++++|...|+.+... |+ ..+..+..+...+....|...++++... ...|+
T Consensus 95 ~~~~l------a~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 95 ALLRR------ASANESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp HHHHH------HHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred HHHHH------HHHHHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 66666 77777888888888887533221 11 2222344555555667777777777442 12333
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCC--
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI--------LVSSDMASAEGILTMMSQAGLEPS-- 263 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~A~~l~~~m~~~g~~pd-- 263 (902)
...... +....+.+.+...+......... .......+..++ ...|+++.|..+++.+.+.. |+
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~ 236 (537)
T 3fp2_A 164 NTSLAS----FFGIFDSHLEVSSVNTSSNYDTA-YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDD 236 (537)
T ss_dssp HHHHHH----HHHTSCHHHHHHTSCCCCSSCSS-HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCH
T ss_pred HhHHHH----HHHhcChHHHHHHHhhccccccH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcc
Confidence 333222 22222222222211111111000 000111111111 01234555555555554432 22
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchH
Q psy767 264 ------AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMM 337 (902)
Q Consensus 264 ------~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 337 (902)
..+|..+...+...|++++|...|++..... |+...+...-......+..+.+...+. ..
T Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~------------~~ 302 (537)
T 3fp2_A 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ------------KA 302 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH------------HH
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH------------HH
Confidence 1234444444555555555555555544322 112222221112222222222222211 01
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH
Q psy767 338 SQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVN-GDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA 415 (902)
Q Consensus 338 ~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 415 (902)
... .+.+..+|..+...|...|++++|...|++. ...|.. ..|..+...+...|++++|.+.++++.+...-.+..+
T Consensus 303 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 381 (537)
T 3fp2_A 303 VDL-NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381 (537)
T ss_dssp HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred hcc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 111 1235788999999999999999999999983 333333 3488899999999999999999999987322222222
Q ss_pred H-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhc----------CC
Q psy767 416 N-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINK----------GQ 484 (902)
Q Consensus 416 t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~----------g~ 484 (902)
. +...+...|++++|...|+...+...-.+..... ....+.....|.+. |+
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG------------------IGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST------------------THHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH------------------HHHHHHHHHHHHHHhhccchhhhHhH
Confidence 2 4455679999999999999987753222111000 00122333456777 99
Q ss_pred hHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 485 IDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 485 ~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
+++|...|+...... +....++..+...+.+.|+ .++|+..|++..+.
T Consensus 444 ~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 444 FNAAIKLLTKACELD---PRSEQAKIGLAQLKLQMEK-IDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHh
Confidence 999999999998763 2345788999999999999 99999999998775
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=189.68 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=113.6
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD---KTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS 193 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~---~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd 193 (902)
-..||+++ |++||++|++++|.++|++|.+ +|+.||++|||+||++||+.|++++|.++|++|.+.|+.||
T Consensus 126 ~~~TynaL------IdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAF------FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHH------HHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 34678888 9999999999999999988764 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
.+||++||.++++.|+..+ .|.++|++|.+.|+.||.++|++++.+
T Consensus 200 vvTYntLI~glcK~G~~~e----------------------------------~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAG----------------------------------TIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHH----------------------------------HHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHhCCCcHH----------------------------------HHHHHHHHHHHcCCCCChhhcccccCh
Confidence 9999999999999987531 567788888999999999999999988
Q ss_pred HHHcCCHHHHHHH
Q psy767 274 YAKHGDMDSVRRL 286 (902)
Q Consensus 274 ~~~~g~~~~A~~l 286 (902)
+.+.+-++.+.++
T Consensus 246 ~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 246 EDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHHh
Confidence 8776444444333
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-14 Score=166.31 Aligned_cols=387 Identities=10% Similarity=-0.039 Sum_probs=275.7
Q ss_pred hHHhhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCC
Q psy767 19 TEVSEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEH 98 (902)
Q Consensus 19 ~~~s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~ 98 (902)
....+++.+|...+.......+.+...+..+...|.+.|++++|...|+..... -+.+...|..+...|...|+
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI------KPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHcCC
Confidence 334577778888877776666677888889999999999999999999999871 24467889999999999999
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC------CCCCCHHH-----------
Q psy767 99 TFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK------TFPISEGV----------- 161 (902)
Q Consensus 99 ~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~------~~~p~~~~----------- 161 (902)
+++|...|+.+ ...|+.. ... +..+...+....|..+++.+... ...|+...
T Consensus 109 ~~~A~~~~~~~---~~~~~~~--~~~------~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 109 FTDAMFDLSVL---SLNGDFD--GAS------IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHHHH---C-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHH---hcCCCCC--hHH------HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999643 2233322 223 44555666677888888887543 11222221
Q ss_pred -------------------HHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHH
Q psy767 162 -------------------FNALIYGHSQA--------NDMASAEGILTMMSQAGLEPS--------AQTYTKLMCGYAK 206 (902)
Q Consensus 162 -------------------yn~Li~~~~~~--------g~~~~A~~l~~~M~~~g~~pd--------~~ty~~ll~a~~~ 206 (902)
+..+...+... |++++|..+|+++.+. .|+ ..+|..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 22222222221 4788999999998876 344 2356677778888
Q ss_pred cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL 286 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~l 286 (902)
.|++++|...++........ ...+..+..++...|+++.|...++.+.... +.+..+|..+...|...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999988876544 5566666777777899999999999988764 45688899999999999999999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy767 287 LAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIR 366 (902)
Q Consensus 287 f~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~ 366 (902)
|++.... . +.+..+|..+...|...|++++|.
T Consensus 333 ~~~a~~~----------------------------------------------~--~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 333 FQKAQSL----------------------------------------------N--PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp HHHHHHH----------------------------------------------C--TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHh----------------------------------------------C--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9873221 1 123567888999999999999999
Q ss_pred HHHHHc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-------HHHHHHHHc----------CCH
Q psy767 367 RLLAQN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-------NHIYHLINK----------GQI 427 (902)
Q Consensus 367 ~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------t~i~~l~~~----------g~~ 427 (902)
..|++. ...|..+ .|..+...+...|++++|.+.|+++.+...-.++.. .....+... |++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 999883 3333433 488899999999999999999999876211111111 112445566 999
Q ss_pred HHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHcc
Q psy767 428 DAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 428 ~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~ 499 (902)
++|...|++..+.. |..+ ...+.+...|.+.|++++|...|+......
T Consensus 445 ~~A~~~~~~a~~~~---p~~~---------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 445 NAAIKLLTKACELD---PRSE---------------------QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHC---TTCH---------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC---CCCH---------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999998752 2211 023456677999999999999999998864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-12 Score=141.02 Aligned_cols=306 Identities=11% Similarity=0.005 Sum_probs=182.7
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
...+..+ ...+.+.|++++|...|+.+.+.+ +.+...|..+...+...|++++|+..|+++.+.. +-+...|
T Consensus 3 ~~~~~~~------~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 3 VEKHLEL------GKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHH
Confidence 3445555 888899999999999999988765 5677899999999999999999999999998863 2266788
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCc--cchhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSEL--FLCFSFQLT------------NLLILVSSDMASAEGILTMMSQAGLEPS 263 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~--~~~~~~~~~------------~~~~~~~g~~~~A~~l~~~m~~~g~~pd 263 (902)
..+...+...|++++|...++........ .....+..+ ...+...|+++.|..+++.+.... +.+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 89999999999999999999988775441 111111111 233333455555555555444432 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCC
Q psy767 264 AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLE 343 (902)
Q Consensus 264 ~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~ 343 (902)
..+|..+...|...|++++|...|++.... .+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------------------------~~ 185 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKL------------------------------------------------KS 185 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------------------------------------CS
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------------------------------CC
Confidence 444444444555555555555544432110 01
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-------
Q psy767 344 PSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN------- 416 (902)
Q Consensus 344 p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t------- 416 (902)
.+..++. .+...+...|++++|.+.|++..+ ..|+...
T Consensus 186 ~~~~~~~--------------------------------~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~ 230 (359)
T 3ieg_A 186 DNTEAFY--------------------------------KISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQ 230 (359)
T ss_dssp CCHHHHH--------------------------------HHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred CCHHHHH--------------------------------HHHHHHHHcCCHHHHHHHHHHHHh---hCccchHHHHHHHH
Confidence 1233444 444444455555555555544444 2222211
Q ss_pred ---------HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHH
Q psy767 417 ---------HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDA 487 (902)
Q Consensus 417 ---------~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~ 487 (902)
....+.+.|++++|...+++..+...-.+. . ... ....+...+.+.|++++
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~---~~~--------------~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE---Y---TVR--------------SKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH---H---HHH--------------HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH---H---HHH--------------HHHHHHHHHHHccCHHH
Confidence 022244556666666666655553221110 0 000 01224445677777777
Q ss_pred HHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q psy767 488 AYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR 541 (902)
Q Consensus 488 A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd 541 (902)
|...++...... +..+.++..+...+...|+ +++|+..|++..+. .|+
T Consensus 291 A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~--~p~ 338 (359)
T 3ieg_A 291 AIRICSEVLQME---PDNVNALKDRAEAYLIEEM-YDEAIQDYEAAQEH--NEN 338 (359)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT--CTT
T ss_pred HHHHHHHHHHhC---cccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCC
Confidence 777777776652 2245567777777777777 78888887777664 455
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-13 Score=144.97 Aligned_cols=198 Identities=11% Similarity=0.004 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
+..|..+...+...|++++|...|+++.+.. +.+..++..+ ...+...|++++|...|+.+.+.+ +-+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRR------ATVFLAMGKSKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH------HHHHHHccCHHHHHHHHHHHHHhC-CCcchHH
Confidence 4456666666666677777777776666542 1245555555 666666677777777766665543 3355666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEP----SAQTYTKL------------MCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~p----d~~ty~~l------------l~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
..+...|...|++++|...|++..+. .| +...+..+ ...+...|++++|...++.+....+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 151 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV- 151 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Confidence 66666666777777777777666654 34 22233333 3566666777777766666655332
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 227 FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
.+...+..+..++...|++++|...++...... +.+..+|..+...|...|++++|...|++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223445555555666677777777776666543 44566666666777777777777777766544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=151.28 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=38.7
Q ss_pred CCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHH
Q psy767 55 SEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKY 134 (902)
Q Consensus 55 ~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~ 134 (902)
+.|++++|...++.... | .+|..+..++.+.|++++|.+.|.+. +|..+|..+ +..+
T Consensus 15 ~~~~ld~A~~fae~~~~---------~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V------~~~a 71 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE---------P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV------VQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC---------h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHH------HHHH
Confidence 56778888888888865 4 37888888888888888888888652 466678888 8888
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~ 214 (902)
...|++++|...++...+. .+++.+.+.++.+|++.|+++++.++++ .|+..+|..+...|...|.+++|.
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888866655553 4456778888888888888888888875 367778888888888888888888
Q ss_pred HHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy767 215 TKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSV 283 (902)
Q Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A 283 (902)
..|..+ ..|..+...+.+.|++++|.+.+..+ .+..+|..++.+|...|+++.|
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 887765 23334444444444444444444443 1334444444444444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=141.64 Aligned_cols=285 Identities=8% Similarity=-0.041 Sum_probs=227.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
.+.+...+..+...+...|++++|..+|+++.+... .+...+..+ +..+...|++++|..+++.+.+.. +.+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~------~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 89 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVH------IGTLVELNKANELFYLSHKLVDLY-PSN 89 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHH------HHHHHHhhhHHHHHHHHHHHHHhC-cCC
Confidence 445566677889999999999999999999987642 244455566 888899999999999999998764 556
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH
Q psy767 159 EGVFNALIYGHSQAN-DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
...|..+...+...| ++++|...|+...+.. ..+...|..+...+...|++++|...++........ ....+..+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 788999999999999 9999999999998874 235678999999999999999999999998775443 2344555777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHH
Q psy767 238 LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDE 317 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~ 317 (902)
.+...|++++|...+++..... +.+..+|..+...|...|++++|...|++.......
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------- 225 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA--------------------- 225 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------------------
Confidence 7888999999999999998865 567889999999999999999999999974221000
Q ss_pred HHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHcCChH
Q psy767 318 VSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVSGHGE 395 (902)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~ 395 (902)
.-.......+..+|..+..+|...|++++|...|++. ...|..+ .|..+...+...|+++
T Consensus 226 ------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 226 ------------------IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp ------------------TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred ------------------ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 0001112345678999999999999999999999983 3333333 3888999999999999
Q ss_pred HHHHHHHHcccCCCCCCCHHH
Q psy767 396 YIDEIISKIQPGVGYSADAAN 416 (902)
Q Consensus 396 ~A~~l~~~m~~~~g~~pd~~t 416 (902)
+|.+.|++..+ +.|+...
T Consensus 288 ~A~~~~~~al~---~~p~~~~ 305 (330)
T 3hym_B 288 NAVDYFHTALG---LRRDDTF 305 (330)
T ss_dssp HHHHHHHTTTT---TCSCCHH
T ss_pred HHHHHHHHHHc---cCCCchH
Confidence 99999999987 6776543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.3e-13 Score=145.35 Aligned_cols=127 Identities=11% Similarity=-0.064 Sum_probs=84.8
Q ss_pred ccCCCCCCcCcc-cccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHH
Q psy767 53 WCSEPSLGPGNL-PCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLI 131 (902)
Q Consensus 53 ~~~~g~~~~A~~-~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li 131 (902)
+.-.|+++.|.. .|...... .......+...|..+...|.+.|++++|...|+++.+.. +.+..+|..+ .
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l------~ 105 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQF--EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYL------G 105 (368)
T ss_dssp -----------CHHHHCCCCC--CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHH------H
T ss_pred hHHHHHHHHHHhhhhhHHHhc--CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH------H
Confidence 334467777776 66555441 000111134557778888888888888888888888764 2356677777 8
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g 189 (902)
..|.+.|++++|...|+.+.+.+ +.+..+|..+...|...|++++|++.|+++....
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888888887765 5577888888888888888888888888888763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-12 Score=138.82 Aligned_cols=273 Identities=8% Similarity=-0.021 Sum_probs=210.5
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQGIEPNR--VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~ 167 (902)
|+-....|++..|+..++.... ..|+. .....+ ..+|...|+++.|...++. . -+|+..++..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l------~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFL------YRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHH------HHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHH------HHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHH
Confidence 3445568999999998877643 34543 233445 8899999999999986644 2 4678889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHH
Q psy767 168 GHSQANDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMA 246 (902)
Q Consensus 168 ~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 246 (902)
.+...|+.++|++.|+++...+..|+. ..+..+..++...|++++|.+.++. ..+...+..+..++...|+++
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999988766754 4566667899999999999999998 345567777788888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHH
Q psy767 247 SAEGILTMMSQAGLEPSAQTY---TKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVC 323 (902)
Q Consensus 247 ~A~~l~~~m~~~g~~pd~~ty---~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~ 323 (902)
+|...|+.+.+.. |+.... .+.+..+...|++++|+.+|+++
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~--------------------------------- 192 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM--------------------------------- 192 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH---------------------------------
Confidence 9999999998874 553322 22334444568999999999974
Q ss_pred HhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHH-HHHH
Q psy767 324 FVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEY-IDEI 400 (902)
Q Consensus 324 ~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~-A~~l 400 (902)
... .+.+..+|+.+..+|.+.|++++|...|++ +...|..+. +..++..+...|+.++ +.++
T Consensus 193 --------------l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 193 --------------ADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp --------------HHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred --------------HHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 222 345788999999999999999999999998 555566554 7889999999999965 6789
Q ss_pred HHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHH
Q psy767 401 ISKIQPGVGYSADAANHIYHLINKGQIDAAYRI 433 (902)
Q Consensus 401 ~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~ 433 (902)
++++.+ +.|+...+.....+.+.++++..-
T Consensus 258 ~~~~~~---~~P~~~~~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 258 LSQLKD---AHRSHPFIKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hCCCChHHHHHHHHHHHHHHHHHH
Confidence 999988 888887766655555555555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-12 Score=143.39 Aligned_cols=197 Identities=11% Similarity=-0.010 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...+.+.|++++|..+|+++.+.. +.+..+|..+ ...|.+.|++++|...|+...+.+ +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFL------GITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 45668889999999999999999999998764 3367788888 999999999999999999988765 556889
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc-ch
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSA-----------QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF-LC 229 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-----------~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~-~~ 229 (902)
|..+...|.+.|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++.+....... +.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 9999999999999999999999998752 332 223334566677777777777776665543221 33
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 230 FSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 230 ~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
..+..+..++...|++++|...|++..+.. +.+..+|+.+...|.+.|++++|+..|++
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444445555555566666666665555442 33455555555666666666666665554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=134.37 Aligned_cols=265 Identities=9% Similarity=0.001 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 115 EPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 115 ~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
..+...+..+ ...+...|++++|..+|+.+...+ +.+...+..++..+...|++++|..+++++.+.. ..+.
T Consensus 19 ~~~~~~~~~~------a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSL------AERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNP 90 (330)
T ss_dssp -CCCTTHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST
T ss_pred hhhHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCH
Confidence 4455566667 888999999999999999998765 5566788888999999999999999999998864 2356
Q ss_pred HHHHHHHHHHHHcC-ChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 195 QTYTKLMCGYAKHG-DMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 195 ~ty~~ll~a~~~~g-~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
..|..+...+...| ++++|...|+........ ....+..+..++...|++++|...+++..... +.+...+..+...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 78889999999999 999999999998876533 34567777888888999999999999998865 4456778889999
Q ss_pred HHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHH
Q psy767 274 YAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLM 353 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li 353 (902)
|...|++++|.+.|++.... .+.+..++..+.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~------------------------------------------------~~~~~~~~~~l~ 200 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSI------------------------------------------------APEDPFVMHEVG 200 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTT------------------------------------------------CTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh------------------------------------------------CCCChHHHHHHH
Confidence 99999999999999974321 123567889999
Q ss_pred HHHHHcCCHHHHHHHHHHcCC-----------CCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HH
Q psy767 354 CGYAKHGDMDSIRRLLAQNGS-----------SLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HI 418 (902)
Q Consensus 354 ~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i 418 (902)
..|...|++++|...|++... ......|..+...+...|++++|.+.|++..+ ..|+... +.
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la 277 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV---LIPQNASTYSAIG 277 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hCccchHHHHHHH
Confidence 999999999999999987311 11223488899999999999999999999987 3444322 44
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q psy767 419 YHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 419 ~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
..+...|++++|...|++..+.
T Consensus 278 ~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 278 YIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHhccHHHHHHHHHHHHcc
Confidence 5567999999999999988664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-10 Score=128.92 Aligned_cols=354 Identities=12% Similarity=-0.000 Sum_probs=266.6
Q ss_pred CCHHHHHHHHHHHHH----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH----cCCHHHHHHHHHHhhh
Q psy767 81 LDISHYNALLRVYLD----NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ----DGNIEGATKILEFMRD 152 (902)
Q Consensus 81 pd~~~yn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~----~g~~~~A~~l~~~m~~ 152 (902)
-+...+..+-..|.. .+++++|...|++..+.| +...+..+ -..|.. .+++++|...|+...+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~L------g~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVL------GLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH------HHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH------HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 367777788888888 889999999999988765 55667777 777887 8999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHhcccCC
Q psy767 153 KTFPISEGVFNALIYGHSQ----ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 153 ~~~~p~~~~yn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~----~g~~~~a~~l~~~~~~~~ 224 (902)
.| +...+..|-..|.. .+++++|+..|+...+.| +...+..|-..|.. .++.++|.+.|+.....+
T Consensus 108 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 108 KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 76 45777778888887 789999999999998876 56777777777877 788999999988877654
Q ss_pred CccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhccCCCC
Q psy767 225 ELFLCFSFQLTNLLILV----SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSVRRLLAQSGSSLVN 296 (902)
Q Consensus 225 ~~~~~~~~~~~~~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~----~g~~~~A~~lf~~m~~~~~~ 296 (902)
+...+..+..++.. .++.++|...|+...+.| +...+..+...|.. .+++++|.++|++....
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 252 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--- 252 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 34555566666666 788999999998888765 56677777777776 78888898888863222
Q ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHc
Q psy767 297 GDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIRRLLAQN 372 (902)
Q Consensus 297 p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~----~g~~~~A~~~~~~m 372 (902)
.+...+..|-..|.. .++.++|...|++.
T Consensus 253 -----------------------------------------------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 253 -----------------------------------------------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp -----------------------------------------------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 134455566666777 88999999999986
Q ss_pred CCCCCcccHHHHHHHHHHc-----CChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHcC---CHHHHHHHHHHHHhccCC
Q psy767 373 GSSLVNGDYLDIIHALAVS-----GHGEYIDEIISKIQPGVGYSADAAN-HIYHLINKG---QIDAAYRIVNTLARSANI 443 (902)
Q Consensus 373 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~g---~~~~A~~~~~~m~~~~~i 443 (902)
...+....+..+...|... +++++|.+.|++..+ .+. ++... +-..+...| +.++|.++|++..+..
T Consensus 286 ~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~~-~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-- 361 (490)
T 2xm6_A 286 AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QGD-ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-- 361 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TTC-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--
T ss_pred HHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--
Confidence 5555555577788888877 899999999999887 432 22222 333344545 7889999998887641
Q ss_pred CCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHH-
Q psy767 444 NGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLIN----KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK- 518 (902)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k----~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~- 518 (902)
.....+++-..|.. .++.++|...|+.....+ .+..+..+...|..
T Consensus 362 ------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 362 ------------------------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYG 412 (490)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHT
T ss_pred ------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcC
Confidence 11124456566777 789999999999988764 24567778888877
Q ss_pred ---cCCCHHHHHHHHHHHHHCCCC
Q psy767 519 ---TNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 519 ---~g~~~~~A~~l~~~m~~~g~~ 539 (902)
.++ .++|...|++..+.|..
T Consensus 413 ~g~~~d-~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 413 LGVERD-YVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSSCCC-HHHHHHHHHHHHHHHCC
T ss_pred CCCCCC-HHHHHHHHHHHHHCCCC
Confidence 677 99999999998887644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=141.75 Aligned_cols=283 Identities=10% Similarity=-0.033 Sum_probs=214.0
Q ss_pred HHCCCchHHHH-HHHHHHHCCC-CC--CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 94 LDNEHTFSPTD-FLAKLESQGI-EP--NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 94 ~~~g~~~~A~~-l~~~M~~~g~-~p--d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
.-.|++++|.. .|++...... .| +...+..+ ...+.+.|++++|...|+.+.+.+ +.+..+|..+..+|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEE------GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQ 108 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHH------HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34578888888 7776543211 11 34556677 889999999999999999999875 66788999999999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHH---------------H
Q psy767 170 SQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQ---------------L 234 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~---------------~ 234 (902)
.+.|++++|+..|+++.+.. ..+..++..+...|...|++++|...++.+............. .
T Consensus 109 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 109 AENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred HHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 99999999999999998875 3477899999999999999999999999988765443322221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLE-PSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGE 313 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~ 313 (902)
+..++ ..|++++|...|+++....-. ++..+|..+...|.+.|++++|...|++...
T Consensus 188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------- 245 (368)
T 1fch_A 188 LGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--------------------- 245 (368)
T ss_dssp THHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred HHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------
Confidence 33333 789999999999999886422 1588999999999999999999999997321
Q ss_pred cHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHc
Q psy767 314 YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVS 391 (902)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~ 391 (902)
. .+.+..+|..+...|...|++++|...|++. ...|..+ .|..+...|...
T Consensus 246 --------------------------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 246 --------------------------V-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp --------------------------H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --------------------------h-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 1 1235678999999999999999999999983 3333333 388899999999
Q ss_pred CChHHHHHHHHHcccCCCCCCCH-----------H----HHHHHHHHcCCHHHHHHHHHH
Q psy767 392 GHGEYIDEIISKIQPGVGYSADA-----------A----NHIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 392 g~~~~A~~l~~~m~~~~g~~pd~-----------~----t~i~~l~~~g~~~~A~~~~~~ 436 (902)
|++++|.+.|++... +.|+. . .+..++...|+.++|..++.+
T Consensus 299 g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALN---MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHH---HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHH---hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999998876 33322 2 245567799999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=143.03 Aligned_cols=352 Identities=9% Similarity=0.017 Sum_probs=158.7
Q ss_pred CccchHHhhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHH
Q psy767 15 VGITTEVSEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYL 94 (902)
Q Consensus 15 ~g~~~~~s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~ 94 (902)
+....+..+..++|...+....+ .-+|..++.++.+.|++.+|...|... +|...|..++.++.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~-----~~vWs~La~A~l~~g~~~eAIdsfika-----------~D~~~y~~V~~~ae 72 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNE-----PAVWSQLAKAQLQKGMVKEAIDSYIKA-----------DDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHcC-----------CCHHHHHHHHHHHH
Confidence 44555667778888888877744 248889999999999999999999653 57779999999999
Q ss_pred HCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC
Q psy767 95 DNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAND 174 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~ 174 (902)
..|++++|..+++..++. .+++.+.+.+ +.+|++.|+++++.++++ .|+..+|+.+...|...|.
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~L------i~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETEL------IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp --------------------------------------------CHHHHTTTTT-------CC----------------C
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHH------HHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC
Confidence 999999999987776663 4567788889 999999999999998884 3677899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q psy767 175 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM 254 (902)
Q Consensus 175 ~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~ 254 (902)
+++|..+|..+ ..|..+..++.+.|++++|.+.+..+ .++.++..+...+...|+++.|......
T Consensus 138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999977 38999999999999999999999988 2467788888899999999999655443
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC-CCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccc
Q psy767 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL-VNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLE 333 (902)
Q Consensus 255 m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~-~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (902)
+..+..-...++..|.+.|++++|..+++...... --....|-+..+-..-+++.+.+...++
T Consensus 203 -----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~----------- 266 (449)
T 1b89_A 203 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF----------- 266 (449)
T ss_dssp -----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred -----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------
Confidence 22333445579999999999999999999865433 1111333333343344455554444432
Q ss_pred cchHHhcCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccC
Q psy767 334 GPMMSQAGLEP------SAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPG 407 (902)
Q Consensus 334 ~~~m~~~g~~p------~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 407 (902)
-.+..++| +...|..++-.|.+.++++.|....-+ ..+..-.-..+.....+-.+.+--.+...--..
T Consensus 267 ---~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~--h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~- 340 (449)
T 1b89_A 267 ---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLE- 340 (449)
T ss_dssp ---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-
T ss_pred ---HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh--CChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-
Confidence 12233333 456788999999999999988876433 222333344556666666666544444443333
Q ss_pred CCCCCCHHH-HHHHHHHcCCHHHHHHHHHH
Q psy767 408 VGYSADAAN-HIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 408 ~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~ 436 (902)
..|...+ ++.++...=+...+..+|++
T Consensus 341 --~~p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 341 --FKPLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp --HCGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 4555554 45555555555555555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-10 Score=131.20 Aligned_cols=405 Identities=11% Similarity=0.046 Sum_probs=270.7
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
-|...|..++. +.+.|++++|..+|+++.+.- +-+...|... +..+.+.|+++.|..+|+...... |+..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~------~~~~~~~~~~~~a~~~~~ral~~~--p~~~ 80 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLY------IEAEIKAKNYDKVEKLFQRCLMKV--LHID 80 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHTTTC--CCHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhcC--CChH
Confidence 47888999998 578999999999999998642 3356678888 999999999999999999988764 6888
Q ss_pred HHHHHHHHH-HhCCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHH---------cCChhHHHHHHHhcccCC
Q psy767 161 VFNALIYGH-SQANDMASAEG----ILTMMSQ-AGLEP-SAQTYTKLMCGYAK---------HGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 161 ~yn~Li~~~-~~~g~~~~A~~----l~~~M~~-~g~~p-d~~ty~~ll~a~~~---------~g~~~~a~~l~~~~~~~~ 224 (902)
.|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|+......
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 888777533 45677776655 7776654 36554 45677777766554 688999999999988842
Q ss_pred CccchhhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHH
Q psy767 225 ELFLCFSFQLTNLLI-------------LVSSDMASAEGILTMMS------QAG---LEPS--------AQTYTKLMCGY 274 (902)
Q Consensus 225 ~~~~~~~~~~~~~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~pd--------~~ty~~LI~a~ 274 (902)
.......+..+..+. ...+++..|..++..+. +.. ++|+ ...|...+...
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 222222222222211 12456777777777632 221 3444 35666666443
Q ss_pred HHc----CCH----HHHHHHHHHhccC-CCCCC-HHHHHHHHHH-------cCCccc----HHHHHHHHHHhhhhhcccc
Q psy767 275 AKH----GDM----DSVRRLLAQSGSS-LVNGD-YLDIIHALAV-------SGHGEY----IDEVSAIVCFVNICFHWLE 333 (902)
Q Consensus 275 ~~~----g~~----~~A~~lf~~m~~~-~~~p~-~~tl~~~l~~-------~~~~~~----~~~~~~l~~~~~~~~~~~~ 333 (902)
... ++. .+|..+|++.... +..+. |..+...+.. .++.+. .+.+..++.
T Consensus 241 ~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~---------- 310 (530)
T 2ooe_A 241 KSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE---------- 310 (530)
T ss_dssp HHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH----------
T ss_pred HcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH----------
Confidence 332 232 4777888886553 22222 4444444443 233321 113333221
Q ss_pred cchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc--cHHHHHHHHHHcCChHHHHHHHHHcccCCC
Q psy767 334 GPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG--DYLDIIHALAVSGHGEYIDEIISKIQPGVG 409 (902)
Q Consensus 334 ~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 409 (902)
... ..+.| +...|..++..+.+.|++++|..+|++. ...|..+ .|..++..+.+.|+.++|.++|++..+.
T Consensus 311 --~Al-~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 311 --RAI-STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp --HHT-TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred --HHH-HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 111 12345 5889999999999999999999999983 4444443 4888888888999999999999999873
Q ss_pred CCCCHHH--HHHH---HHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCC
Q psy767 410 YSADAAN--HIYH---LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQ 484 (902)
Q Consensus 410 ~~pd~~t--~i~~---l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~ 484 (902)
.|+... +..+ +...|++++|..+|+...+..+ ..+. ....++..+.+.|+
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p---~~~~---------------------~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DIPE---------------------YVLAYIDYLSHLNE 440 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT---TCHH---------------------HHHHHHHHHTTTTC
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC---CCHH---------------------HHHHHHHHHHhCCC
Confidence 343222 1111 2368999999999999887642 2111 13345556778899
Q ss_pred hHHHHHHHHHHHHccCCCC-CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q psy767 485 IDAAYRIVNTLARSANING-EQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 485 ~~~A~~l~~~m~~~~~~~~-~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~ 536 (902)
.++|..+|+........++ .....|...+......|. .+.+..++.++.+.
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~-~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-LASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 9999999999988643222 233478888888889998 99999999997664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-09 Score=123.66 Aligned_cols=367 Identities=12% Similarity=-0.003 Sum_probs=276.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----C
Q psy767 101 SPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ----DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ----A 172 (902)
Q Consensus 101 ~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~----~ 172 (902)
.++..+....+.| +...+..+ -..|.. .++++.|...|+...+.| +...+..|-..|.. .
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~l------g~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 92 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLEL------GYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVP 92 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHH------HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHCC---CHHHHHHH------HHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 3455666655544 66677777 777777 899999999999988876 46788888899988 8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh----cCC
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV----SSD 244 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~----~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~g~ 244 (902)
++.++|+..|++..+.| +...+..|-..|.. .+++++|...|+.....+ +......+..++.. .++
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999876 66777788888888 889999999999987764 34455555666665 789
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHH
Q psy767 245 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSA 320 (902)
Q Consensus 245 ~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~----~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~ 320 (902)
.+.|...|+...+.| +...+..|-..|.. .++.++|+++|++..
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~----------------------------- 214 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA----------------------------- 214 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-----------------------------
Confidence 999999999998865 67888888888888 899999999998732
Q ss_pred HHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCcccHHHHHHHHHH----cC
Q psy767 321 IVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIRRLLAQNGSSLVNGDYLDIIHALAV----SG 392 (902)
Q Consensus 321 l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g 392 (902)
+.| +...+..|...|.. .+++++|..+|++....+....+..+...|.. .+
T Consensus 215 ------------------~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 215 ------------------TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp ------------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSC
T ss_pred ------------------HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Confidence 222 45566777777776 78999999999986555555567777788887 88
Q ss_pred ChHHHHHHHHHcccCCCCCCCHHH-HHHHHHHc-----CCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCC
Q psy767 393 HGEYIDEIISKIQPGVGYSADAAN-HIYHLINK-----GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGV 466 (902)
Q Consensus 393 ~~~~A~~l~~~m~~~~g~~pd~~t-~i~~l~~~-----g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 466 (902)
+.++|.+.|++..+ .| .|+... +-..+... ++.++|..++++..+..
T Consensus 274 d~~~A~~~~~~a~~-~~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~------------------------- 326 (490)
T 2xm6_A 274 EPLKALEWYRKSAE-QG-NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG------------------------- 326 (490)
T ss_dssp CHHHHHHHHHHHHT-TT-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-------------------------
T ss_pred CHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-------------------------
Confidence 99999999999887 43 233332 33344455 79999999999887641
Q ss_pred ccccchHHHHHHHHhcC---ChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCC
Q psy767 467 GYSADAANHIYHLINKG---QIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVK----TNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 467 g~~~~~~~li~~~~k~g---~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~----~g~~~~~A~~l~~~m~~~g~~ 539 (902)
+....+++-..|.+.| +.++|..+|+.....+ ++..+..+...|.. .++ .++|+..|++..+.|
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHhCC--
Confidence 1112345555566656 7899999999988763 34577888888887 677 999999999998876
Q ss_pred CChhhHHHHHHHhccc-ccccCcchhhHhhhhhccCcchHHHHHHHHHHhh
Q psy767 540 PRAFNLAVLIKAHVLK-EDYTGAVETFEYCVNQFRATPWKGELLKRFIQAE 589 (902)
Q Consensus 540 Pd~~t~~~ll~a~~~~-~~~~g~~~~~~~~~~~~~a~~~~~~ll~~m~~~g 589 (902)
+...+..|-..+ .+ .+..++.++ |.. +|+...+.+
T Consensus 398 -~~~a~~~Lg~~y-~~g~g~~~d~~~---------A~~----~~~~A~~~~ 433 (490)
T 2xm6_A 398 -LSAAQVQLGEIY-YYGLGVERDYVQ---------AWA----WFDTASTND 433 (490)
T ss_dssp -CHHHHHHHHHHH-HHTSSSCCCHHH---------HHH----HHHHHHHHH
T ss_pred -CHHHHHHHHHHH-HcCCCCCCCHHH---------HHH----HHHHHHHCC
Confidence 355555555444 31 012677788 777 888887776
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-12 Score=137.70 Aligned_cols=261 Identities=8% Similarity=-0.065 Sum_probs=203.2
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
+...+..+ ...+.+.|++++|..+|+.+.... +.+..+|..+...|.+.|++++|+..|+++.+.. ..+..+
T Consensus 64 ~~~~~~~~------~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEE------GLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 34457777 889999999999999999998865 6678999999999999999999999999998874 335789
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhcccCCCccch---------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHH
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLC---------FSFQLTNLLILVSSDMASAEGILTMMSQAGLE-PSAQT 266 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t 266 (902)
|..+...|...|++++|...++.+......... ..+..+...+...|++++|..+|+++....-. ++..+
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 999999999999999999999998764322211 11223456677799999999999999986422 26889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCH
Q psy767 267 YTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSA 346 (902)
Q Consensus 267 y~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~ 346 (902)
|..+...|.+.|++++|++.|++... . .+.+.
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------------------~-~p~~~ 247 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALT-----------------------------------------------V-RPEDY 247 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------------------------------H-CTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------------------------h-CCCCH
Confidence 99999999999999999999997321 1 12357
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCC-----------
Q psy767 347 QTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSAD----------- 413 (902)
Q Consensus 347 ~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd----------- 413 (902)
.+|..+..+|.+.|++++|...|++. ...|..+ .|..+...|...|++++|.+.|++..+ +.|+
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS---LQRKSRNQQQVPHPA 324 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH---HHHCC----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccCCCcccchhh
Confidence 88999999999999999999999983 3344433 388899999999999999999999876 2222
Q ss_pred ----HH-HHHHHHHHcCCHHHHHHHHHH
Q psy767 414 ----AA-NHIYHLINKGQIDAAYRIVNT 436 (902)
Q Consensus 414 ----~~-t~i~~l~~~g~~~~A~~~~~~ 436 (902)
.+ ++-.++...|+.+.+..+.+.
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 11 234456688999988887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-11 Score=132.68 Aligned_cols=272 Identities=10% Similarity=-0.025 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...+...|++++|..+|+++.+... .+..++..+ ...+.+.|++++|...|+.+.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSL------GLTQAENEKDGLAIIALNHARMLD-PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcC-cCCHHH
Confidence 344567788888999999999999999887542 366777777 889999999999999999988764 557788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHH-HH-H
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT-NL-L 238 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~-~ 238 (902)
|..+...|...|++++|++.|+++.... |+.. .+..+...+. .......+ .. +
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADV----------------------DIDDLNVQSEDFF 147 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHH----------------------HHHHHHHHHHhHH
Confidence 9999999999999999999999998763 3322 2222211000 00000000 00 1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHH
Q psy767 239 ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEV 318 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~ 318 (902)
+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.|++....
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------------- 201 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL------------------------- 201 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------------
Confidence 223445555555555555443 335556666666666666666666666652110
Q ss_pred HHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCc-ccHHHHHHHHHHcCChHH
Q psy767 319 SAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVN-GDYLDIIHALAVSGHGEY 396 (902)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~-~~~~~li~~~~~~g~~~~ 396 (902)
.+.+..+|..+...|...|++++|...|++. ...|.. ..|..+...+...|++++
T Consensus 202 -----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 202 -----------------------RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp -----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 0123455566666666666666666666652 222222 225556666666666666
Q ss_pred HHHHHHHcccCCCCCCC------------HHH----HHHHHHHcCCHHHHHHHHHHH
Q psy767 397 IDEIISKIQPGVGYSAD------------AAN----HIYHLINKGQIDAAYRIVNTL 437 (902)
Q Consensus 397 A~~l~~~m~~~~g~~pd------------~~t----~i~~l~~~g~~~~A~~~~~~m 437 (902)
|.+.|++... ..|+ ... +...+...|+.++|..+++..
T Consensus 259 A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIY---MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHH---HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHH---hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6666666554 2233 111 233445666666666666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-09 Score=129.82 Aligned_cols=318 Identities=11% Similarity=0.085 Sum_probs=221.5
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
..-+...+...|.+++|..+|++.. . .....+.+ +. ..|++++|.++.++.. +..+|..+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VL------ie---~i~nldrAiE~Aervn------~p~vWsqL 1111 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVL------IE---HIGNLDRAYEFAERCN------EPAVWSQL 1111 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHH------HH---HHhhHHHHHHHHHhcC------CHHHHHHH
Confidence 4457778888999999999999852 1 11112222 22 7788999999988663 24789999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
-.++...|++++|++.|... -|...|..++.+|.+.|++++|.+.+....+....+...+ -+...|++.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCH
Confidence 99999999999999999653 3788889999999999999999999988776553322222 367777778888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHh
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~ 325 (902)
++...+. . .++...|..+-..|...|++++|..+|... ++|..+...+..+++.+ .+.+..
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q---~AIEaa--- 1244 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQ---AAVDGA--- 1244 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHH---HHHHHH---
Confidence 8654443 1 567778888889999999999999999984 47888888888886633 332211
Q ss_pred hhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 326 ~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
.+ .-+..+|..+-.+|...|++..|....-.+.. ....+..++.-|.+.|.+++|+.+++.-.
T Consensus 1245 ------------rK---A~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1245 ------------RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred ------------HH---hCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11 25678999999999999999999887664322 22236789999999999999999998876
Q ss_pred cCCCCCCCHH---HHHHHHH---HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccc-hHHHHHH
Q psy767 406 PGVGYSADAA---NHIYHLI---NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSAD-AANHIYH 478 (902)
Q Consensus 406 ~~~g~~pd~~---t~i~~l~---~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~li~~ 478 (902)
. +.|.+. |-+..+. +-++..++.++|. ++..+++... ...+ +. .-.++..
T Consensus 1308 ~---LeraH~gmftELaiLyaKy~peklmEhlk~f~---~rini~k~~r-~~e~----------------~~lW~elv~L 1364 (1630)
T 1xi4_A 1308 G---LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLR-AAEQ----------------AHLWAELVFL 1364 (1630)
T ss_pred c---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH---HhcccchHhH-HHHH----------------HHHHHHHHHH
Confidence 5 555443 3233333 3444555555544 4333333110 0000 01 2236677
Q ss_pred HHhcCChHHHHH
Q psy767 479 LINKGQIDAAYR 490 (902)
Q Consensus 479 ~~k~g~~~~A~~ 490 (902)
|.+.|.++.|..
T Consensus 1365 Y~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1365 YDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccHHHHHH
Confidence 899999999873
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-08 Score=124.66 Aligned_cols=374 Identities=10% Similarity=0.047 Sum_probs=257.0
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 87 NALLRVYLDNEHTFSPTDFLAKLESQG--IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 87 n~li~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
...+++|+..|.+.+|++++++....+ +.-+...-+.+ +.+..+. +..+..+..+...... ..-
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL------i~tAIka-D~~Rv~eyI~kLd~~d-------~~e 1054 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL------ILTAIKA-DRTRVMEYINRLDNYD-------APD 1054 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH------HHHHHHh-ChhhHHHHHHHhhhcc-------HHH
Confidence 477889999999999999999988432 11233444445 6666665 5566666666655222 334
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCC
Q psy767 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSD 244 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 244 (902)
+-..+...|.+++|..+|++.. . .....+.++. ..+++++|.++.+++.. +..+.-+...+...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aervn~------p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCC
Confidence 6677888999999999999852 1 2222233332 77889999998886632 5677788888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCcccHHHHHHHHH
Q psy767 245 MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGD-YLDIIHALAVSGHGEYIDEVSAIVC 323 (902)
Q Consensus 245 ~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~-~~tl~~~l~~~~~~~~~~~~~~l~~ 323 (902)
+++|...|... -|...|..++.+|.+.|++++|.+.|....+..-.|. ...+..+++..++ .+....+
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r---leele~f-- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR---LAELEEF-- 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC---HHHHHHH--
Confidence 99999998553 5778888899999999999999999986554432221 2234444454433 3332221
Q ss_pred HhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHH
Q psy767 324 FVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISK 403 (902)
Q Consensus 324 ~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 403 (902)
. -.++...|..+...|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++
T Consensus 1190 --------------I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1190 --------------I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred --------------H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 1456777888999999999999999999974 4899999999999999999999998
Q ss_pred cccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhc
Q psy767 404 IQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINK 482 (902)
Q Consensus 404 m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~ 482 (902)
... ++.+. +-.+|...|.+..|....-.+... |. ....++..|.+.
T Consensus 1247 A~n-----~~aWkev~~acve~~Ef~LA~~cgl~Iiv~----~d------------------------eLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1247 ANS-----TRTWKEVCFACVDGKEFRLAQMCGLHIVVH----AD------------------------ELEELINYYQDR 1293 (1630)
T ss_pred hCC-----HHHHHHHHHHHhhhhHHHHHHHHHHhhhcC----HH------------------------HHHHHHHHHHHc
Confidence 844 34433 455667888888888766543211 11 233577779999
Q ss_pred CChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-------ChhhHHHHHHHhccc
Q psy767 483 GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHP-------RAFNLAVLIKAHVLK 555 (902)
Q Consensus 483 g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~P-------d~~t~~~ll~a~~~~ 555 (902)
|.+++|..+++...... +.....|+-+...+++.+ +++.++-++-..+++-.| +...|.-+.--+ +
T Consensus 1294 G~feEAI~LlE~aL~Le---raH~gmftELaiLyaKy~--peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY-~- 1366 (1630)
T 1xi4_A 1294 GYFEELITMLEAALGLE---RAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY-D- 1366 (1630)
T ss_pred CCHHHHHHHHHHHhccC---hhHhHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHH-H-
Confidence 99999999998776553 234557777777777754 466655555544444333 345555555334 4
Q ss_pred ccccCcchh
Q psy767 556 EDYTGAVET 564 (902)
Q Consensus 556 ~~~~g~~~~ 564 (902)
+.|+++.
T Consensus 1367 --~~~e~dn 1373 (1630)
T 1xi4_A 1367 --KYEEYDN 1373 (1630)
T ss_pred --hcccHHH
Confidence 6677776
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-11 Score=127.98 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=193.6
Q ss_pred hhcHHHHHHHhccccchhHHHH-HHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCch
Q psy767 22 SEATAEVTTVLGALGAFLVLLV-LLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTF 100 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~ 100 (902)
.|.|..|...........+.+. -...++...|...|+++.|...+... -+|+..++..+...+...++.+
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---------~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---------SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---------SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---------CChhHHHHHHHHHHHcCCCcHH
Confidence 5888888888765444444442 24456678999999999888776553 2467888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 101 SPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 101 ~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
+|++.++++...+..|+ ...+..+ ..++...|++++|.+.++. +.+...+..+...|.+.|++++|.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~l------a~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMA------ASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHH------HHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHH------HHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999998776665 4445555 7889999999999999987 567889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 180 GILTMMSQAGLEPSAQTY---TKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 180 ~l~~~M~~~g~~pd~~ty---~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.... +.+...+..+..++...|++++|...|++..
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999874 654321 123344445589999999999998763 3456677778888889999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHhcc
Q psy767 257 QAGLEPSAQTYTKLMCGYAKHGDMDS-VRRLLAQSGS 292 (902)
Q Consensus 257 ~~g~~pd~~ty~~LI~a~~~~g~~~~-A~~lf~~m~~ 292 (902)
... +-+..+|..++..+...|+.++ +.++++++..
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 764 5578889999999999999876 5678877543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=132.06 Aligned_cols=228 Identities=11% Similarity=-0.001 Sum_probs=183.4
Q ss_pred HHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 46 FVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLI 125 (902)
Q Consensus 46 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll 125 (902)
+......+...|++++|...|+.+... .+.+...|..+...|...|++++|...|+++.+.. +.+..++..+
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l- 95 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL- 95 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH-
Confidence 344566677788999999998888761 23477889999999999999999999999998763 3367778888
Q ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH--------------HH-HHHhCCCHHHHHHHHHHHHHCCC
Q psy767 126 SNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL--------------IY-GHSQANDMASAEGILTMMSQAGL 190 (902)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L--------------i~-~~~~~g~~~~A~~l~~~M~~~g~ 190 (902)
...|...|++++|...|+.+.... +.+...+..+ .. .+...|++++|.++|+++.+..
T Consensus 96 -----a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 168 (327)
T 3cv0_A 96 -----AVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN- 168 (327)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-
Confidence 999999999999999999988764 3333444443 22 3777899999999999998874
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q psy767 191 EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKL 270 (902)
Q Consensus 191 ~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~L 270 (902)
..+..++..+...|...|++++|...++.+..... .+...+..+..++...|++++|...+++..+.. +.+..+|..+
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 246 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNM 246 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 33678999999999999999999999998876543 234567777788888999999999999988764 4568899999
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q psy767 271 MCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 271 I~a~~~~g~~~~A~~lf~~m 290 (902)
...|.+.|++++|.+.|++.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999974
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-10 Score=126.71 Aligned_cols=389 Identities=11% Similarity=-0.004 Sum_probs=225.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ-----G--IEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFM 150 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-----g--~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m 150 (902)
.......||.+-..+...|++++|++.|++..+. + ..| ...+|+.+ ..+|...|++++|...++..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl------a~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY------AWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH------HHHHHHTTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH------HHHHHHcCChHHHHHHHHHH
Confidence 3345678999999999999999999999886541 1 123 45778888 99999999999999999876
Q ss_pred hhC-----C-C-CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCChhHHHHHH
Q psy767 151 RDK-----T-F-PISEGVFNALIYGHSQA--NDMASAEGILTMMSQAGLEPS-AQTYTKLMCG---YAKHGDMDSIKTKI 217 (902)
Q Consensus 151 ~~~-----~-~-~p~~~~yn~Li~~~~~~--g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a---~~~~g~~~~a~~l~ 217 (902)
.+. + . .....+|+.+-.++.+. +++++|+..|++..+. .|+ ...+..+..+ +...++.++|.+.+
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 431 1 1 12345666665566554 5799999999999886 454 4444444444 45567778888888
Q ss_pred HhcccCCCccchhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 218 PSLKPQSELFLCFSFQLTNLLIL----VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
+......+... ..+..+...+. ..++.++|..++++..... +.+..++..+...|.+.|++++|...|.+....
T Consensus 199 ~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 199 RQAIRLNPDNQ-YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHCSSCH-HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCcch-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 87765443322 22222222222 3578889999999887764 567888999999999999999999999986443
Q ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-
Q psy767 294 LVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN- 372 (902)
Q Consensus 294 ~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m- 372 (902)
. |+.......+..+- ...... .... ............+.++.|...|++.
T Consensus 277 ~--p~~~~~~~~lg~~y----~~~~~~----------------~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 277 I--PNNAYLHCQIGCCY----RAKVFQ----------------VMNL-------RENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp S--TTCHHHHHHHHHHH----HHHHHH----------------HHHC-------------CHHHHHHHHHHHHHHHHHHH
T ss_pred C--CChHHHHHHHHHHH----HHHHHH----------------hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2 21111111110000 000000 0000 0000001111223456777777762
Q ss_pred CCCC-CcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH-H---HH--HHHHcCCHHHHHHHHHHHHhccCCCC
Q psy767 373 GSSL-VNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN-H---IY--HLINKGQIDAAYRIVNTLARSANING 445 (902)
Q Consensus 373 ~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~---i~--~l~~~g~~~~A~~~~~~m~~~~~i~~ 445 (902)
...| ....+..+...+...|++++|.+.|++... ....|.... + +. .+...|+.++|...|++..+. .|
T Consensus 328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~ 403 (472)
T 4g1t_A 328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQ 403 (472)
T ss_dssp HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CC
T ss_pred hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---Cc
Confidence 2222 334488899999999999999999999887 222332221 1 11 123678999999999887663 22
Q ss_pred CcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHH
Q psy767 446 EQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDK 525 (902)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~ 525 (902)
... .+.+....+.++++..... +|..+.+|+.+...+...|+ .++
T Consensus 404 ~~~-------------------------------~~~~~~~~l~~~~~~~l~~---~p~~~~~~~~LG~~~~~~g~-~~~ 448 (472)
T 4g1t_A 404 KSR-------------------------------EKEKMKDKLQKIAKMRLSK---NGADSEALHVLAFLQELNEK-MQQ 448 (472)
T ss_dssp CCH-------------------------------HHHHHHHHHHHHHHHHHHH---CC-CTTHHHHHHHHHHHHHH-CC-
T ss_pred ccH-------------------------------HHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC-HHH
Confidence 210 0111223344555554443 23356789999999999999 999
Q ss_pred HHHHHHHHHHCC-CCCChhhH
Q psy767 526 VLAVCHRLTDEN-LHPRAFNL 545 (902)
Q Consensus 526 A~~l~~~m~~~g-~~Pd~~t~ 545 (902)
|++.|++..+.| ..|++.++
T Consensus 449 A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 449 ADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHhcCCCCCcHhhc
Confidence 999999976643 56666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-09 Score=127.04 Aligned_cols=390 Identities=10% Similarity=0.008 Sum_probs=259.4
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHH-HHCCCch
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVY-LDNEHTF 100 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~-~~~g~~~ 100 (902)
.+.+..|..++.......+.+.-+|...+..+.+.|++++|+.+|+.... ..|++..|...+... ...|+++
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~-------~~p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM-------KVLHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------TCCCHHHHHHHHHHHHHHTTTST
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHHccchh
Confidence 57888888888887777777888888888888889999999999999987 447888888887643 4568887
Q ss_pred HHHH----HHHHHHH-CCCCC-CHHHHHHHHHhHHHHHHHHH---------cCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 101 SPTD----FLAKLES-QGIEP-NRVTYQQLISNSKLISKYCQ---------DGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 101 ~A~~----l~~~M~~-~g~~p-d~~t~~~ll~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+|.+ +|+.... .|..| +...|... +....+ .|+++.|..+|+........+....|...
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~------~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDY------INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHH------HHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHH------HHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 7765 6666554 35544 45667666 665554 78999999999998873111112444433
Q ss_pred HHHH-------------HhCCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHHc----CCh-
Q psy767 166 IYGH-------------SQANDMASAEGILTMMS------QAG---LEPS--------AQTYTKLMCGYAKH----GDM- 210 (902)
Q Consensus 166 i~~~-------------~~~g~~~~A~~l~~~M~------~~g---~~pd--------~~ty~~ll~a~~~~----g~~- 210 (902)
.... .+.+++..|..++.++. +.. +.|+ ...|...+...... ++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 2211 12456777877777632 111 2343 23455444333322 222
Q ss_pred ---hHHHHHHHhcccCCCccchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 211 ---DSIKTKIPSLKPQSELFLCFSFQLTNLLILV-------SSDMA-------SAEGILTMMSQAGLEPSAQTYTKLMCG 273 (902)
Q Consensus 211 ---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~-------~A~~l~~~m~~~g~~pd~~ty~~LI~a 273 (902)
..+..+|++.....+ .....+..+..++.. .|+++ +|..+|++..+.-.+.+...|..++..
T Consensus 252 ~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 256667777665422 234455555555553 68876 888999888863234568889999999
Q ss_pred HHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC--HHHHHH
Q psy767 274 YAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS--AQTYTK 351 (902)
Q Consensus 274 ~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~--~~t~~~ 351 (902)
+.+.|++++|..+|++... +.|+ ..+|..
T Consensus 331 ~~~~g~~~~A~~~~~~al~-------------------------------------------------~~p~~~~~~~~~ 361 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLA-------------------------------------------------IEDIDPTLVYIQ 361 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHH-------------------------------------------------SSSSCHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhC-------------------------------------------------ccccCchHHHHH
Confidence 9999999999999987322 2343 257888
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCCCccc-HHHHHHH-HHHcCChHHHHHHHHHcccCCCCCCCHHHH----HHHHHHc
Q psy767 352 LMCGYAKHGDMDSIRRLLAQN-GSSLVNGD-YLDIIHA-LAVSGHGEYIDEIISKIQPGVGYSADAANH----IYHLINK 424 (902)
Q Consensus 352 Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~-~~~li~~-~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----i~~l~~~ 424 (902)
++..+.+.|++++|..+|++- ...+.... |...+.. +...|+.++|..+|++..+ ..|+...+ +..+.+.
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH---HCCCCHHHHHHHHHHHHhC
Confidence 889999999999999999984 33332222 2222222 3368999999999999887 45665543 3344578
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHc
Q psy767 425 GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 425 g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
|+.++|..+|++.......+|... ..++. .+....+.|+.+.+..++..+...
T Consensus 439 g~~~~Ar~~~~~al~~~~~~~~~~---------------------~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSGSLPPEKS---------------------GEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCSCGGGC---------------------HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHhccCCCHHHH---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987643333211 01232 344456789999999998887665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-10 Score=116.02 Aligned_cols=222 Identities=9% Similarity=0.005 Sum_probs=178.0
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC---
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGL--EPS--- 193 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~--~pd--- 193 (902)
..|..+ ...+...|++++|...|+...+.+ .+...|..+..+|...|++++|+..|+...+... .|+
T Consensus 6 ~~~~~~------g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 6 DKEKAE------GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHH------HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHH------HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH
Confidence 345556 888999999999999999998877 7789999999999999999999999999877521 122
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 194 -AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMC 272 (902)
Q Consensus 194 -~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~ 272 (902)
..+|..+...|...|++++|...|+........ ...+...|++++|...++.+.... +.+...|..+..
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 147 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 578889999999999999999999988774433 234566788999999999988753 345667888889
Q ss_pred HHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHH
Q psy767 273 GYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKL 352 (902)
Q Consensus 273 a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~L 352 (902)
.|...|++++|...|++... . .+.+..+|..+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~-----------------------------------------------~-~~~~~~~~~~l 179 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIK-----------------------------------------------R-APEDARGYSNR 179 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----------------------------------------------H-CTTCHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHh-----------------------------------------------c-CcccHHHHHHH
Confidence 99999999999999987321 1 12256788888
Q ss_pred HHHHHHcCCHHHHHHHHHHc-CCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 353 MCGYAKHGDMDSIRRLLAQN-GSSLVNG-DYLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 353 i~~y~~~g~~~~A~~~~~~m-~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
..+|...|++++|...|++. ...|..+ .|..+...+...|++++|.+.|++..+
T Consensus 180 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999873 3333333 377888889999999999999988876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-10 Score=113.97 Aligned_cols=199 Identities=11% Similarity=-0.034 Sum_probs=159.6
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
|++...|..+...+.+.|++++|...|++..+.. +.+...+..+ ...+.+.|++++|...|+...+.+ |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWL------ARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 4677889999999999999999999999998653 2367778778 889999999999999999998875 5677
Q ss_pred HHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccc
Q psy767 160 GVFNALIYGHSQA-----------NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFL 228 (902)
Q Consensus 160 ~~yn~Li~~~~~~-----------g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~ 228 (902)
..|..+...|.+. |++++|+..|++..+... -+...|..+-.++...|++++|...|++..... .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 8899999999999 999999999999988632 256788899999999999999999999998876 56
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 229 CFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 229 ~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
...+..+..++...|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6777788888889999999999999998864 557788999999999999999999999864
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-09 Score=110.69 Aligned_cols=222 Identities=11% Similarity=-0.015 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCC--
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FPIS-- 158 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~-- 158 (902)
...|..+...+...|++++|..+|++..+.. .+...|..+ ...|...|++++|...|+...+.. ..|+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNR------AAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHH------HHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 4678889999999999999999999998877 678888888 999999999999999999986542 1122
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 159 --EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 159 --~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
..+|..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+..... .....+..+.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 146 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHH
Confidence 578999999999999999999999999886 4553 346667889999999998877532 3445666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
.++...|++++|...+++..... +.+..+|..+...|.+.|++++|...|++...
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------------ 201 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE------------------------ 201 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------------
Confidence 77888999999999999998865 55788999999999999999999999997321
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
. .+.+..+|..+..+|.+.|++++|...|++
T Consensus 202 -----------------------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 202 -----------------------K-DPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp -----------------------H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------h-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 123577888999999999999999999987
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-09 Score=108.69 Aligned_cols=201 Identities=13% Similarity=-0.040 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+...|...|++++|...|+++.+.. +.+...+..+ ...|...|++++|.+.|+.+.+.+ +.+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAAL------AVVFQTEMEPKLADEEYRKALASD-SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHH
Confidence 4667788888888888888888888887653 2356667777 888888888888888888877654 4466788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
..+...|...|++++|+++|+++...+..|+ ...+..+...+...|++++|...++........ ....+..+..++..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHH
Confidence 8888888888888888888888877434453 456777788888888888888888887664422 34556666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
.|++++|...++.+.... +.+...+..+...|...|++++|.+.++++...
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888988888887654 566778888899999999999999999986543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-09 Score=106.08 Aligned_cols=164 Identities=11% Similarity=0.007 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...+...|++++|...|+++.+.. +.+...+..+ ...|...|++++|...|+...... +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVR------AEIYQYLKVNDKAQESFRQALSIK-PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHH------HHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence 45667778888888888888888888877643 2246667667 777888888888888888876654 446677
Q ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHH
Q psy767 162 FNALIYGHSQA-NDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLI 239 (902)
Q Consensus 162 yn~Li~~~~~~-g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (902)
|..+...|... |++++|...|+++.+.+..|+ ...+..+...+...|++++|...++.+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------- 141 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA----------------- 141 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 88888888888 888888888888877333343 45666677777777777766665555433
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 240 LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 240 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.. +.+...|..+...|.+.|++++|...|++
T Consensus 142 ------------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 142 ------------------AQ-PQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp ------------------HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------------------hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 33466677777777777777777777775
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-08 Score=114.86 Aligned_cols=309 Identities=10% Similarity=-0.060 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccC-----
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQA-----G--LEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ----- 223 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-----g--~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~----- 223 (902)
.....||.|-..+...|+.++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888888888888888766431 1 122 3567888888888888888888777665431
Q ss_pred --CCccchhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHhccCCCC
Q psy767 224 --SELFLCFSFQLTNLLILV--SSDMASAEGILTMMSQAGLEPSAQTYTKLMCG---YAKHGDMDSVRRLLAQSGSSLVN 296 (902)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a---~~~~g~~~~A~~lf~~m~~~~~~ 296 (902)
........+......+.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|++.|++.....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 011112222222222222 356778888887776653 2234444444433 334456666777666522110
Q ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH-
Q psy767 297 GDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIRRLLAQ- 371 (902)
Q Consensus 297 p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~----~g~~~~A~~~~~~- 371 (902)
+.+..++..+...+.. .|++++|..++++
T Consensus 206 ----------------------------------------------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a 239 (472)
T 4g1t_A 206 ----------------------------------------------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239 (472)
T ss_dssp ----------------------------------------------SSCHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred ----------------------------------------------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1133344444333333 3456667776665
Q ss_pred cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHH----HH-------------------HcCCH
Q psy767 372 NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYH----LI-------------------NKGQI 427 (902)
Q Consensus 372 m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~----l~-------------------~~g~~ 427 (902)
....|..+. +..+...|...|++++|.+.+++..+ ..|+....... +. ..+..
T Consensus 240 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE---YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELI 316 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred HHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Confidence 222222222 56677777777777777777777766 55554332111 10 12234
Q ss_pred HHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccc
Q psy767 428 DAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLP 507 (902)
Q Consensus 428 ~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~ 507 (902)
+.|...++.........+. ..+++...|...|++++|...|+........+.....
T Consensus 317 ~~A~~~~~~a~~~~~~~~~------------------------~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFR------------------------VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCC------------------------CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhcCCchhh------------------------hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 5666666665553221111 2345666688889999999999887765322211111
Q ss_pred hHHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCCChhh
Q psy767 508 VGGFLVRH-MVKTNQPIDKVLAVCHRLTDENLHPRAFN 544 (902)
Q Consensus 508 ~~n~li~~-~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t 544 (902)
.+..+... ....|+ .++|+..|++..+ +.|+...
T Consensus 373 ~~~~~~~~~~~~~~~-~~~Ai~~y~kal~--i~~~~~~ 407 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKC-EDKAIHHFIEGVK--INQKSRE 407 (472)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHHHHHHH--SCCCCHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCcccHH
Confidence 22222222 234566 8899998888766 3555433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=115.08 Aligned_cols=182 Identities=10% Similarity=-0.069 Sum_probs=128.7
Q ss_pred CCCchHHHHHHHHHHHCCCCC---CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 96 NEHTFSPTDFLAKLESQGIEP---NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 96 ~g~~~~A~~l~~~M~~~g~~p---d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
.|++++|+..|+++.+..... +..+|..+ ...|...|++++|...|+.....+ +.+..+|..+...|...
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYER------GVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHH------HHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 477899999999998763211 34566666 888999999999999999988765 55788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGIL 252 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~ 252 (902)
|++++|++.|++..+.. ..+..+|..+...|...|++++|...++.+........ ........+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999998863 23567888889999999999999888888766432222 2222223334456666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 253 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 253 ~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
....... +++...|. ++..+...++.++|+..+.+
T Consensus 168 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence 5555432 23333333 55555555666666666655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-09 Score=109.51 Aligned_cols=208 Identities=14% Similarity=0.021 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 116 PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 116 pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
++...+..+ ...+.+.|++++|...|+...+.+ |.+...|..+...+.+.|++++|+..|++..+.. +-+..
T Consensus 3 ~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRL------GVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLG 74 (217)
T ss_dssp -CCHHHHHH------HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 455566666 778888999999999999888765 6677888888899999999999999999888764 22456
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q psy767 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 275 (902)
Q Consensus 196 ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~ 275 (902)
.+..+...+...+... . . .....|++++|...|++..+.. +-+...|..+-..|.
T Consensus 75 a~~~lg~~~~~~~~~~------------~---~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQA------------E---D---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHHHHHHHHTC------------S---S---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh------------h---h---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 7777777777761000 0 0 0011234444444444444332 234555666666666
Q ss_pred HcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHH
Q psy767 276 KHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCG 355 (902)
Q Consensus 276 ~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~ 355 (902)
..|++++|+..|++ ..+.. .+...+..+..+
T Consensus 130 ~~g~~~~A~~~~~~-----------------------------------------------al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 130 LLGERDKAEASLKQ-----------------------------------------------ALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HTTCHHHHHHHHHH-----------------------------------------------HHHHC--CCHHHHHHHHHH
T ss_pred HcCChHHHHHHHHH-----------------------------------------------HHhcc--cchHHHHHHHHH
Confidence 66666666666665 11222 345555556666
Q ss_pred HHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 356 YAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 356 y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
|...|++++|...|++ +...|..+. +..+...+...|++++|.+.|++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6666666666666655 222233222 4455555566666666666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-09 Score=107.66 Aligned_cols=195 Identities=9% Similarity=-0.010 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC--CHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPI--SEGVF 162 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~y 162 (902)
.+......+...|++++|...|++..+.... +...+..+ ...|...|++++|...|+...+..-.| ...+|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRR------AVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHH------HHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 3456677888999999999999999876422 44467777 889999999999999999988743112 13348
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVS 242 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (902)
..+...|...|++++|++.|+...+.. ..+..+|..+...|...|++++|...++........ +...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHH
Confidence 999999999999999999999998864 235678999999999999999999999999887333 333444444233445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q psy767 243 SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD---MDSVRRLLAQ 289 (902)
Q Consensus 243 g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~---~~~A~~lf~~ 289 (902)
+++++|...|+...+.. +.+...|..+...+...|+ +++|...|++
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 69999999999988764 4457778888888888888 7778888876
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-08 Score=103.82 Aligned_cols=163 Identities=15% Similarity=0.045 Sum_probs=104.3
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
...|..+ ...+...|++++|...|+.+.... +.+...|..+...|...|++++|.+.|+++.+.. ..+...+
T Consensus 37 ~~~~~~~------a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQL------GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVL 108 (252)
T ss_dssp HHHHHHH------HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHH------HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHH
Confidence 3455666 788888999999999999887764 5567888889999999999999999999988764 2366788
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELF-LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 276 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~ 276 (902)
..+...|...|++++|...++.+...+..+ ....+..+..++...|++++|...+++..... +.+...|..+...|..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 888888888888888888887776521111 22233333333444444444444444444332 2233444444444444
Q ss_pred cCCHHHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQ 289 (902)
Q Consensus 277 ~g~~~~A~~lf~~ 289 (902)
.|++++|...|++
T Consensus 188 ~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 188 EREYVPARQYYDL 200 (252)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=9e-08 Score=100.56 Aligned_cols=126 Identities=12% Similarity=-0.008 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCC
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ----DGNIEGATKILEFMRDKTFPI 157 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p 157 (902)
+..++..+-..|...|++++|...|++..+.+ +...+..+ ...|.. .+++++|...|+...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l------g~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNL------GVLYYQGQGVEKNLKKAASFYAKACDLN--- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHH------HHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHH------HHHHHcCCCcCCCHHHHHHHHHHHHHCC---
Confidence 55677777788888888888888888877732 45566666 777777 888888888888887776
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHhccc
Q psy767 158 SEGVFNALIYGHSQ----ANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIKTKIPSLKP 222 (902)
Q Consensus 158 ~~~~yn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~----~g~~~~a~~l~~~~~~ 222 (902)
+...+..+-..|.. .+++++|+..|++..+.+ +...+..+-..|.. .+++++|...|+....
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 56777788888888 888888888888887765 66677777777777 7777766666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-08 Score=102.52 Aligned_cols=222 Identities=10% Similarity=-0.038 Sum_probs=169.2
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCC
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ----ANDMASAEGILTMMSQAGLEP 192 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~p 192 (902)
+..++..+ -..|...|++++|...|+...+.+ +...+..+...|.. .|++++|+..|++..+.+
T Consensus 5 ~~~a~~~l------g~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 5 DPKELVGL------GAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 72 (273)
T ss_dssp CHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHH------HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---
Confidence 45556666 788889999999999999988844 45788888899999 999999999999999876
Q ss_pred CHHHHHHHHHHHHH----cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q psy767 193 SAQTYTKLMCGYAK----HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV----SSDMASAEGILTMMSQAGLEPSA 264 (902)
Q Consensus 193 d~~ty~~ll~a~~~----~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~l~~~m~~~g~~pd~ 264 (902)
+...+..+...|.. .+++++|...|+.....+ +...+..+..++.. .+++++|...|++..+.+ +.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 77888888888998 999999999888887754 44556666666776 788888888888888765 56
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhc
Q psy767 265 QTYTKLMCGYAK----HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340 (902)
Q Consensus 265 ~ty~~LI~a~~~----~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~ 340 (902)
..+..+-..|.. .+++++|+..|++.. +.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-----------------------------------------------~~ 179 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKAC-----------------------------------------------DL 179 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-----------------------------------------------HT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----------------------------------------------HC
Confidence 677777777777 788888888887621 11
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCcccHHHHHHHHHH----cCChHHHHHHHHHccc
Q psy767 341 GLEPSAQTYTKLMCGYAK----HGDMDSIRRLLAQNGSSLVNGDYLDIIHALAV----SGHGEYIDEIISKIQP 406 (902)
Q Consensus 341 g~~p~~~t~~~Li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 406 (902)
+ +...+..+...|.. .+++++|...|++.........+..+...|.. .+++++|.+.|++..+
T Consensus 180 ~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 180 K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 1 34566667777777 78888888888774333334446667777776 7778888888877766
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-09 Score=106.88 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 42 LVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
....+..+...+...|++++|...|+.... ..+.+...|..+...|...|++++|...|++..+.. +.+..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 94 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE------ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAY 94 (243)
T ss_dssp --------------------CCTTHHHHHT------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHH
Confidence 344455556666677777777777777665 223356667777777777777777777777766543 2245556
Q ss_pred HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 122 QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201 (902)
Q Consensus 122 ~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll 201 (902)
..+ ...|...|++++|...|+.+.+.. +.+...|..+...+.+.|++++|...|+++.+.. ..+...+..+.
T Consensus 95 ~~l------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 166 (243)
T 2q7f_A 95 YGA------GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFG 166 (243)
T ss_dssp HHH------HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHH------HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 666 667777777777777777766554 4456667777777777777777777777766553 22455666666
Q ss_pred HHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q psy767 202 CGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 281 (902)
Q Consensus 202 ~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~ 281 (902)
..+...|++++|...++.+ .... +.+..+|..+...|...|+++
T Consensus 167 ~~~~~~~~~~~A~~~~~~~-----------------------------------~~~~-~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAV-----------------------------------TEQD-PGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHH-----------------------------------HHHC-TTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHcCCHHHHHHHHHHH-----------------------------------HHhC-cccHHHHHHHHHHHHHccCHH
Confidence 6666666666655555544 3322 345677888888888888888
Q ss_pred HHHHHHHHhcc
Q psy767 282 SVRRLLAQSGS 292 (902)
Q Consensus 282 ~A~~lf~~m~~ 292 (902)
+|.+.|++...
T Consensus 211 ~A~~~~~~~~~ 221 (243)
T 2q7f_A 211 KALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888887644
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-09 Score=110.19 Aligned_cols=244 Identities=9% Similarity=0.000 Sum_probs=178.5
Q ss_pred HHcCCHHHHHHHHHHhhhCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 135 CQDGNIEGATKILEFMRDKTF---PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~---~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
...|++++|...|+.+.+... +.+..+|..+...|...|++++|+..|++..+.. ..+..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 356889999999999987632 1246788999999999999999999999998874 336789999999999999999
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+|...|+......+. ....+..+..++...|++++|...|+.+.+. .|+...+...+..+...|++++|...|.+..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998775432 3456677777788899999999999998875 4555555556666677799999999997632
Q ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 292 SSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 292 ~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
.. . +++...+ .++..+...++.++|...+.+
T Consensus 172 ~~----------------------------------------------~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 172 EK----------------------------------------------S--DKEQWGW-NIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HH----------------------------------------------S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHH
T ss_pred hc----------------------------------------------C--CcchHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence 21 1 1222223 356667777778888888877
Q ss_pred cCCCCC------cccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-HHHHHHHHcCCHHHHHHHH
Q psy767 372 NGSSLV------NGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-NHIYHLINKGQIDAAYRIV 434 (902)
Q Consensus 372 m~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~i~~l~~~g~~~~A~~~~ 434 (902)
.-.... ...|..+...|...|++++|.+.|++... ..|+.. .....+...|++++|.+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 433222 12367788888888999999999988877 556443 3455666778888777665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-08 Score=111.00 Aligned_cols=247 Identities=9% Similarity=-0.030 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCC-HHHHHHHHHHhhhCCCCCCHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN-IEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
...|+.+...+...|++++|+..|++..+.... +...|+.+ ..++...|+ +++|+..|+.....+ +-+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~------g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFR------RVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHH------HHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHH------HHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 456888889999999999999999999875422 56778888 888999997 999999999998876 557889
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
|+.+-.++.+.|++++|+..|+.+.+... -+...|..+..++...|++++|+..++.+...... +...+..+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999998752 36789999999999999999999999998876544 33445555555555
Q ss_pred -cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcc
Q psy767 242 -SSDMASA-----EGILTMMSQAGLEPSAQTYTKLMCGYAKHG--DMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGE 313 (902)
Q Consensus 242 -~g~~~~A-----~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g--~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~ 313 (902)
.|..++| ...|+...... +-+...|+.+...|...| ++++|++.+.++
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----------------------- 302 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----------------------- 302 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-----------------------
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-----------------------
Confidence 5654666 47777776653 445678888888888877 578888777653
Q ss_pred cHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHc--CCCCCccc-H
Q psy767 314 YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG---------DMDSIRRLLAQN--GSSLVNGD-Y 381 (902)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g---------~~~~A~~~~~~m--~~~~~~~~-~ 381 (902)
.....+...+..+...|.+.| .+++|..+|++. ...|.... |
T Consensus 303 --------------------------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 303 --------------------------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp --------------------------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred --------------------------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 112335677888888888864 258899999886 55555544 6
Q ss_pred HHHHHHHH
Q psy767 382 LDIIHALA 389 (902)
Q Consensus 382 ~~li~~~~ 389 (902)
..+...+.
T Consensus 357 ~~~~~~l~ 364 (382)
T 2h6f_A 357 RYIGRSLQ 364 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=104.41 Aligned_cols=163 Identities=9% Similarity=0.003 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+ ...|...|++++|...|+...... +.+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINF------ANLLSSVNELERALAFYDKALELD-SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHcC-CcchHH
Confidence 44556777777777888888888888877543 2256666666 777778888888888888776654 445677
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
|..+...|...|++++|.++|+++.+.. ..+...+..+...+...|++++|...++.+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------- 153 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE------------------- 153 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------
Confidence 7777778888888888888888777653 23455666666666666666655555444322
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.. +.+...|..+...|.+.|++++|...|++
T Consensus 154 ----------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 154 ----------------LN-ENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp ----------------HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ----------------hC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 33556677777777777777777777775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.6e-09 Score=103.81 Aligned_cols=202 Identities=8% Similarity=-0.033 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHH
Q psy767 41 LLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVT 120 (902)
Q Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 120 (902)
.+...+..+...+...|++++|...|...... .+.+...|..+...|...|++++|...|++..+.. +.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 78 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence 34556677788889999999999999988861 23467889999999999999999999999998754 236777
Q ss_pred HHHHHHhHHHHHHHHHc-CCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q psy767 121 YQQLISNSKLISKYCQD-GNIEGATKILEFMRDKTFPI-SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 198 (902)
+..+ ...|... |++++|...|+.+.+.+..| +...|..+...+...|++++|+..|+++.+.. ..+...+.
T Consensus 79 ~~~l------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 151 (225)
T 2vq2_A 79 NNNY------GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK 151 (225)
T ss_dssp HHHH------HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHH------HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence 8888 9999999 99999999999998733333 36788999999999999999999999998864 23577888
Q ss_pred HHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 199 KLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 199 ~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
.+...+...|++++|...++.+...........+.....++...|+.+.|..+++.+.
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8888999999999888887776553221122222333333333444444444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.3e-08 Score=99.99 Aligned_cols=235 Identities=9% Similarity=-0.013 Sum_probs=164.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCccc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~ 314 (902)
....+...|+++.|...|++..+.. +.+...|..+...|...|++++|++.|++....+
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 67 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-------------------- 67 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------------------
Confidence 4445556777778888888777653 3345578888889999999999999998742211
Q ss_pred HHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCc-ccHHHHHHHHHHcC
Q psy767 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVN-GDYLDIIHALAVSG 392 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~-~~~~~li~~~~~~g 392 (902)
........+|..+...|...|++++|...|++. ...|.. ..|..+...|...|
T Consensus 68 -------------------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 122 (272)
T 3u4t_A 68 -------------------------NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122 (272)
T ss_dssp -------------------------CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred -------------------------CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc
Confidence 011113456788888999999999999999873 333333 34888999999999
Q ss_pred ChHHHHHHHHHcccCCCCCCCHHH---HHH-HHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcc
Q psy767 393 HGEYIDEIISKIQPGVGYSADAAN---HIY-HLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGY 468 (902)
Q Consensus 393 ~~~~A~~l~~~m~~~~g~~pd~~t---~i~-~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~ 468 (902)
++++|.+.|++..+ ..|+... .+. .+...+++++|...|++..+.. |..+
T Consensus 123 ~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~-------------------- 176 (272)
T 3u4t_A 123 NFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK---PNIY-------------------- 176 (272)
T ss_dssp CHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCH--------------------
T ss_pred CHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---ccch--------------------
Confidence 99999999999988 4565543 333 4556779999999999888752 2211
Q ss_pred ccchHHHHHHHHhcCC---hHHHHHHHHHHHHccCCCCC-----ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q psy767 469 SADAANHIYHLINKGQ---IDAAYRIVNTLARSANINGE-----QLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHP 540 (902)
Q Consensus 469 ~~~~~~li~~~~k~g~---~~~A~~l~~~m~~~~~~~~~-----~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~P 540 (902)
...+.+...+...|+ +++|...++.........+. ...+|..+...|...|+ .++|+..+++..+. .|
T Consensus 177 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~--~p 252 (272)
T 3u4t_A 177 -IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD-KVKADAAWKNILAL--DP 252 (272)
T ss_dssp -HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CT
T ss_pred -HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--Cc
Confidence 012334455666677 88888888887765422211 12477888999999999 99999999998774 46
Q ss_pred ChhhH
Q psy767 541 RAFNL 545 (902)
Q Consensus 541 d~~t~ 545 (902)
+....
T Consensus 253 ~~~~a 257 (272)
T 3u4t_A 253 TNKKA 257 (272)
T ss_dssp TCHHH
T ss_pred cHHHH
Confidence 64443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-08 Score=112.52 Aligned_cols=131 Identities=11% Similarity=-0.036 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----C
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR----VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK----T 154 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~ 154 (902)
...+..+...+...|++++|...|++..+.... +. ..|..+ ...|...|++++|...|++.... +
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQL------GNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 344556777889999999999999999876322 33 356666 88899999999999999887542 1
Q ss_pred -CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC-----------------hh
Q psy767 155 -FPISEGVFNALIYGHSQANDMASAEGILTMMSQA----GLEP-SAQTYTKLMCGYAKHGD-----------------MD 211 (902)
Q Consensus 155 -~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~ll~a~~~~g~-----------------~~ 211 (902)
.+....+|..+...|...|++++|...|++.... +-.| ...++..+...|...|+ ++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 1234467888999999999999999999987653 1111 23477778888888888 77
Q ss_pred HHHHHHHhc
Q psy767 212 SIKTKIPSL 220 (902)
Q Consensus 212 ~a~~l~~~~ 220 (902)
+|...+++.
T Consensus 201 ~A~~~~~~a 209 (411)
T 4a1s_A 201 RAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-07 Score=97.27 Aligned_cols=196 Identities=10% Similarity=0.019 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHH-------HcCCH-------
Q psy767 83 ISHYNALLRVYLDN----EHT----FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC-------QDGNI------- 140 (902)
Q Consensus 83 ~~~yn~li~~~~~~----g~~----~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~-------~~g~~------- 140 (902)
...|...+....++ ++. ++|..+|++..... +-+...|..+ ...+. +.|++
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~------~~~~~~~~~~l~~~g~~~~~~~~~ 80 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA------AQYLEQSSKLLAEKGDMNNAKLFS 80 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHH------HHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHH------HHHHHHhchhhhhccchhhcccch
Confidence 45677777765554 233 67889999988743 2356677766 55554 45885
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHcCChhHHHHHHH
Q psy767 141 EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQ-TYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 141 ~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~-ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
++|..+|++....--+-+...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999887322445678999999999999999999999999985 554 33 78888999999999999999998
Q ss_pred hcccCCCccchhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 219 SLKPQSELFLCFSFQLTNLLI-LVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
......... ...+.....+. ...|+.+.|..+|+...+.. +-+...|..++..+.+.|++++|..+|++
T Consensus 159 ~a~~~~p~~-~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 159 KAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 887754322 22222111111 12577777777777766542 33566677777777777777777777765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-08 Score=114.51 Aligned_cols=344 Identities=13% Similarity=0.032 Sum_probs=207.6
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCH---HHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNI---EGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+...+.+.|++++|.++|++..+.|. |+ .+..+ -..|...|+. ++|...|+...+. +...+..|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~L------g~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L 75 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGL------ADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTC------C--------------------------------CHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHH------HHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH
Confidence 56667788999999999999988763 23 34445 5566667887 8999999887754 44667777
Q ss_pred HHHHHhCC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHhcccCCCccchhhHHHHHH
Q psy767 166 IYGHSQAN-----DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS---IKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 166 i~~~~~~g-----~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~---a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
-..+...| +.++|+..|+...+.|.. + .+..|...|...+.... +.+.+......+ .......+..
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~ 149 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVL 149 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 76555555 788999999999998743 3 56666677776665443 333333333222 2344555556
Q ss_pred HHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHhccCCCCCCHHHHHHHHHHcC
Q psy767 238 LILVSS----DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG---DMDSVRRLLAQSGSSLVNGDYLDIIHALAVSG 310 (902)
Q Consensus 238 ~~~~~g----~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g---~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~ 310 (902)
++...+ ..+.+..+++..... .|+ .+..|-..|...| +.++|++.|++....+
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---------------- 209 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG---------------- 209 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC----------------
Confidence 666555 444555555544422 333 8888888899999 8899999998743332
Q ss_pred CcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHcCCCCCcccHHHHHH
Q psy767 311 HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH----GDMDSIRRLLAQNGSSLVNGDYLDIIH 386 (902)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~----g~~~~A~~~~~~m~~~~~~~~~~~li~ 386 (902)
.++...+..|...|... +++++|...|++.. .+....+..+..
T Consensus 210 --------------------------------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 210 --------------------------------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256 (452)
T ss_dssp --------------------------------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred --------------------------------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 33444445566666544 68999999999866 444444666666
Q ss_pred H-H--HHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhccCCCCCcccchhhHHHhh
Q psy767 387 A-L--AVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKG-----QIDAAYRIVNTLARSANINGEQLPVGGFLVRHM 458 (902)
Q Consensus 387 ~-~--~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g-----~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~ 458 (902)
. + ...+++++|.+.|++..+ .| .|+....+..+...| ++++|..+|++.. . .
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~-~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~-----g------------ 316 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRA-AD-QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-G-----R------------ 316 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-T-----T------------
T ss_pred HHHhCCCCCCHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-C-----C------------
Confidence 6 3 457889999999999877 55 344444444444566 8999999998765 1 1
Q ss_pred hhcCCCCCccccchHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHc---CCCHHHHHHHHH
Q psy767 459 VKTNQPGVGYSADAANHIYHLIN----KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKT---NQPIDKVLAVCH 531 (902)
Q Consensus 459 ~~~~~~~~g~~~~~~~li~~~~k----~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~---g~~~~~A~~l~~ 531 (902)
+....+++-..|.. ..+.++|..+|+.....+.. .....|...|... ..+.++|...|+
T Consensus 317 ---------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~-----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 317 ---------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN-----SADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp ---------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT-----THHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH-----HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 11123445444544 33899999999998876532 3455555555431 223899999999
Q ss_pred HHHHCCC
Q psy767 532 RLTDENL 538 (902)
Q Consensus 532 ~m~~~g~ 538 (902)
...+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 9888875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-08 Score=105.74 Aligned_cols=119 Identities=12% Similarity=-0.046 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----CC
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN----RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK----TF 155 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~ 155 (902)
..+......+...|++++|...|+++.+.... + ...+..+ ...|...|++++|...++..... +-
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQL------GNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 44556667788999999999999999876322 3 3456666 88899999999999999886432 21
Q ss_pred C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC
Q psy767 156 P-ISEGVFNALIYGHSQANDMASAEGILTMMSQAGL-EPS----AQTYTKLMCGYAKHGD 209 (902)
Q Consensus 156 ~-p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ty~~ll~a~~~~g~ 209 (902)
. ....++..+...|...|++++|...|++..+... .++ ..++..+...|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 2 2346788899999999999999999988755311 122 3377778888888888
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-08 Score=109.43 Aligned_cols=123 Identities=11% Similarity=-0.031 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh---
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN----RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD--- 152 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~--- 152 (902)
.+....+......+...|++++|...|++..+.... + ..+|..+ ...|...|++++|...|+....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQL------GNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 356677888888899999999999999999876322 3 2456666 8889999999999999987643
Q ss_pred -CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC
Q psy767 153 -KTFPI-SEGVFNALIYGHSQANDMASAEGILTMMSQAGL-EPS----AQTYTKLMCGYAKHGD 209 (902)
Q Consensus 153 -~~~~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ty~~ll~a~~~~g~ 209 (902)
.+-.| ...+|..+...|...|++++|+..|++...... .++ ..++..+...|...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 22222 246788889999999999999999998765310 112 3477778888888888
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-08 Score=104.45 Aligned_cols=205 Identities=12% Similarity=0.089 Sum_probs=160.6
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQ-------GIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD 152 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-------g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~ 152 (902)
+.+..+|..+...|...|++++|..+|+++.+. .......++..+ ...|...|++++|...|+....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL------ALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH------HHHHHHCCCHHHHHHHHHHHHH
Confidence 345677999999999999999999999998763 122234556666 8899999999999999998765
Q ss_pred C------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q psy767 153 K------T-FPISEGVFNALIYGHSQANDMASAEGILTMMSQA------GLEP-SAQTYTKLMCGYAKHGDMDSIKTKIP 218 (902)
Q Consensus 153 ~------~-~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~ 218 (902)
. + .+....+|..+...|...|++++|...|++..+. +-.| ...++..+...|...|++++|...++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 2 2334577899999999999999999999998764 2223 34567888899999999999999998
Q ss_pred hcccC------C-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------------
Q psy767 219 SLKPQ------S-ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA--------------------------------- 258 (902)
Q Consensus 219 ~~~~~------~-~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~--------------------------------- 258 (902)
..... + .......+..+..++...|++++|...++++...
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 88653 2 2233456667777888899999999999988852
Q ss_pred ---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 259 ---------------GLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 259 ---------------g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
..+.+..+|..+...|.+.|++++|.+.|++.
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11234567888999999999999999999874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=104.96 Aligned_cols=236 Identities=9% Similarity=-0.028 Sum_probs=183.8
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAND-MASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
..|..+ ...+.+.|++++|+..|+.....+ +-+...|+.+-.++...|+ +++|+..|++...... -+...|
T Consensus 98 ~a~~~l------g~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~ 169 (382)
T 2h6f_A 98 DVYDYF------RAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVW 169 (382)
T ss_dssp HHHHHH------HHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHH------HHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 446666 778889999999999999998875 5678899999999999997 9999999999998742 267799
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK- 276 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~- 276 (902)
..+-.++...|++++|+..|+.+...... +...+..+..++...|++++|...|+++.+.. +-+...|+.+..+|.+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998875433 34556667777777889999999999888765 4567888888888888
Q ss_pred cCCHHHHH-----HHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHH
Q psy767 277 HGDMDSVR-----RLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYT 350 (902)
Q Consensus 277 ~g~~~~A~-----~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~ 350 (902)
.|..++|. +.|++.. . +.| +...|+
T Consensus 248 ~~~~~eA~~~~el~~~~~Al-----------------------------------------------~--l~P~~~~a~~ 278 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMI-----------------------------------------------K--LVPHNESAWN 278 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHH-----------------------------------------------H--HSTTCHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHH-----------------------------------------------H--HCCCCHHHHH
Confidence 56556663 5555421 1 234 567888
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHcCCCCCccc-HHHHHHHHHHcC---------ChHHHHHHHHHc-ccCCCCCCCHHH
Q psy767 351 KLMCGYAKHG--DMDSIRRLLAQNGSSLVNGD-YLDIIHALAVSG---------HGEYIDEIISKI-QPGVGYSADAAN 416 (902)
Q Consensus 351 ~Li~~y~~~g--~~~~A~~~~~~m~~~~~~~~-~~~li~~~~~~g---------~~~~A~~l~~~m-~~~~g~~pd~~t 416 (902)
.+...|...| ++++|...+.++...+..+. +..+...|...| ..++|.++|+++ .+ +.|....
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~---~DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE---KDTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT---TCGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---hCchhHH
Confidence 8888888888 68999999988843333332 667888888764 258999999999 66 6776543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-08 Score=108.84 Aligned_cols=266 Identities=9% Similarity=-0.032 Sum_probs=191.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISE----GVFNALIYGHSQANDMASAEGILTMMSQA----GLEP-SAQTYTKLM 201 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~ll 201 (902)
...+...|++++|...|+...+.+ +.+. ..|..+...|...|++++|+..|++..+. +-.| ...++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 677889999999999999988764 2333 47889999999999999999999987653 2122 345778888
Q ss_pred HHHHHcCChhHHHHHHHhcccCC-----CccchhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC-
Q psy767 202 CGYAKHGDMDSIKTKIPSLKPQS-----ELFLCFSFQLTNLLILVSSD-----------------MASAEGILTMMSQA- 258 (902)
Q Consensus 202 ~a~~~~g~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~-----------------~~~A~~l~~~m~~~- 258 (902)
..|...|++++|...+++..... .......+..+..++...|+ ++.|...+.+....
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776531 22233456666777777899 99999998876542
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhccccc
Q psy767 259 ---GL-EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEG 334 (902)
Q Consensus 259 ---g~-~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (902)
+- .....+|..+...|...|++++|+..|++....
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------------------------- 252 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI----------------------------------------- 252 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----------------------------------------
Confidence 11 122357888889999999999999999873210
Q ss_pred chHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCC----cccHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 335 PMMSQAGLE-PSAQTYTKLMCGYAKHGDMDSIRRLLAQN----GSSLV----NGDYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 335 ~~m~~~g~~-p~~~t~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
....+.. ....++..+...|...|++++|...|++. ...+. ...+..+...|...|++++|.+.+++..
T Consensus 253 --~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 253 --AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp --HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0111100 11347788899999999999999999872 11111 1226778889999999999999999876
Q ss_pred cCC---CCCCCHH----HHHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 406 PGV---GYSADAA----NHIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 406 ~~~---g~~pd~~----t~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
... +..+... .+...+...|++++|...+++..+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 511 1111111 1344566999999999999988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-07 Score=105.32 Aligned_cols=275 Identities=10% Similarity=0.006 Sum_probs=196.0
Q ss_pred CCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---
Q psy767 116 PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS----EGVFNALIYGHSQANDMASAEGILTMMSQA--- 188 (902)
Q Consensus 116 pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~--- 188 (902)
+....+... ...+...|++++|...|+...+.+ +.+ ...|..+...|...|++++|...|++....
T Consensus 7 ~~~~~l~~~------g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 7 ASCLELALE------GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 345555556 778889999999999999988764 333 357888999999999999999999987543
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCC-----CccchhhHHHHHHHHHhcCC-----------------
Q psy767 189 -GLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS-----ELFLCFSFQLTNLLILVSSD----------------- 244 (902)
Q Consensus 189 -g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~----------------- 244 (902)
+-.|. ..++..+...|...|++++|...+....... .......+..+..++...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 22222 4477888899999999999999888775421 11123456666677777899
Q ss_pred ---HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHH
Q psy767 245 ---MASAEGILTMMSQA----GLEP-SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYID 316 (902)
Q Consensus 245 ---~~~A~~l~~~m~~~----g~~p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~ 316 (902)
++.|...+.+.... +..+ ...+|..+...|...|++++|...|++....
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------- 216 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI----------------------- 216 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----------------------
Confidence 99999998876542 2111 2457888889999999999999999873210
Q ss_pred HHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCc----ccHHHHHHH
Q psy767 317 EVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQN----GSSLVN----GDYLDIIHA 387 (902)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~~----~~~~~li~~ 387 (902)
....+..+ ...++..+...|...|++++|...|++. ...+.. ..+..+...
T Consensus 217 --------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 217 --------------------AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp --------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 11111111 2347888899999999999999999872 111121 126778899
Q ss_pred HHHcCChHHHHHHHHHcccC---CCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 388 LAVSGHGEYIDEIISKIQPG---VGYSADAAN----HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 388 ~~~~g~~~~A~~l~~~m~~~---~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
|...|++++|.+.+++.... .+-.+.... +...+...|++++|...+++..+.
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987652 111111111 334556899999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=100.61 Aligned_cols=282 Identities=10% Similarity=-0.051 Sum_probs=182.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPS-----AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT 235 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~ 235 (902)
.+...-..+...|++++|..+|+++.+.. |+ ...|..+...|...|++++|...++....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------- 71 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT------------- 71 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 34445566777888888888888877753 33 34666777777778888877776664322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccH
Q psy767 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYI 315 (902)
Q Consensus 236 ~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~ 315 (902)
+..... .......++..+...|...|++++|...|.+....
T Consensus 72 ---------------~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------- 112 (338)
T 3ro2_A 72 ---------------LARTIG--DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---------------------- 112 (338)
T ss_dssp ---------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------
T ss_pred ---------------Hhhccc--ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------------
Confidence 211110 00112456777888899999999999999873210
Q ss_pred HHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHc--
Q psy767 316 DEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGD--------------------MDSIRRLLAQN-- 372 (902)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~--------------------~~~A~~~~~~m-- 372 (902)
....+-.+ ...++..+...|...|+ +++|...+++.
T Consensus 113 ---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 113 ---------------------SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp ---------------------HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11111111 13477788888999999 89998888762
Q ss_pred --CCCCCcc----cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHH-------HHHHHHHHcCCHHHHHHHHHHHHh
Q psy767 373 --GSSLVNG----DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAA-------NHIYHLINKGQIDAAYRIVNTLAR 439 (902)
Q Consensus 373 --~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------t~i~~l~~~g~~~~A~~~~~~m~~ 439 (902)
...+..+ .+..+...+...|++++|.+.+++..+...-.++.. .+...+...|++++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111122 267788899999999999999998765211112211 134456699999999999998876
Q ss_pred ccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCC---CCCccchHHHHHHHH
Q psy767 440 SANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANI---NGEQLPVGGFLVRHM 516 (902)
Q Consensus 440 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~---~~~~~~~~n~li~~~ 516 (902)
...-.+..... ......+...|...|++++|...++........ +.....++..+...+
T Consensus 252 ~~~~~~~~~~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 252 LARQLKDRAVE------------------AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhHH------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 42221111000 001233555688999999999999887654311 111234677889999
Q ss_pred HHcCCCHHHHHHHHHHHHHC
Q psy767 517 VKTNQPIDKVLAVCHRLTDE 536 (902)
Q Consensus 517 ~~~g~~~~~A~~l~~~m~~~ 536 (902)
...|+ +++|...+++..+.
T Consensus 314 ~~~g~-~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 314 TALGN-HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTC-HHHHHHHHHHHHHC
T ss_pred HHcCC-hHHHHHHHHHHHHH
Confidence 99999 99999999997664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-07 Score=89.67 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
++..|..+-..|.+.|++++|+..|++..+.... +..+|..+ ..+|.+.|++++|...++...... +-+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l------a~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKL------GKTYMDIGLPNDAIESLKKFVVLD-TTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH------HHHHHHCCCHHHHHHHHHHHHhcC-chhHHH
Confidence 5667888888888888888888888887765322 55667667 777888888888888887776654 445666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
+..+...+...++++.|...+.+..... .-+...+..+...|.+.|++++|.+.|+...+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~------------------- 135 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS------------------- 135 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-------------------
Confidence 7777777788888888888888777653 22455667777777777777766666555433
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
.. +.+..+|..+...|.+.|++++|++.|++..
T Consensus 136 ----------------~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 136 ----------------IK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp ----------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------hc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22 4556778888888888888888888888743
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.1e-08 Score=108.16 Aligned_cols=307 Identities=10% Similarity=-0.013 Sum_probs=198.2
Q ss_pred cCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHH--HCCCchHHH-----------HHHHHHHHCCCCCCHHH
Q psy767 54 CSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYL--DNEHTFSPT-----------DFLAKLESQGIEPNRVT 120 (902)
Q Consensus 54 ~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~--~~g~~~~A~-----------~l~~~M~~~g~~pd~~t 120 (902)
.+.+++++|..+.+++... .....-.+++..|-.++..-. -.+....+. +.++.+..... +...
T Consensus 23 i~~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQE-LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HHHH
T ss_pred HHHcCHHHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cchh
Confidence 3467788888888777542 112222345555555544321 223333343 66666654211 1111
Q ss_pred HHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CC--
Q psy767 121 YQQLISNSKLISKYCQDGNIEGATKILEFMRDK----TFPI-SEGVFNALIYGHSQANDMASAEGILTMMSQAGL-EP-- 192 (902)
Q Consensus 121 ~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~p-- 192 (902)
+....-.......+...|++++|...|+..... +-++ ...+|..+...|...|++++|+..+.+..+.-- .+
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 111000001155667899999999999998653 2112 346788999999999999999999998865311 11
Q ss_pred ---CHHHHHHHHHHHHHcCChhHHHHHHHhcccC----C-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q psy767 193 ---SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ----S-ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQA----GL 260 (902)
Q Consensus 193 ---d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~----g~ 260 (902)
...++..+...|...|++++|...+...... + .......+..+..++...|+++.|...+++.... +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1357888889999999999999998877642 1 1222345666777788899999999999988772 33
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHh
Q psy767 261 -EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQ 339 (902)
Q Consensus 261 -~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~ 339 (902)
+....++..+...|.+.|++++|.+.|++.... ...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------~~~ 296 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY-------------------------------------------SQK 296 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------------------------HHH
Confidence 344677899999999999999999999873210 111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 340 AGLEPSAQTYTKLMCGYAKHGD---MDSIRRLLAQNGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 340 ~g~~p~~~t~~~Li~~y~~~g~---~~~A~~~~~~m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
.+-......+..+...|...|+ +++|..++++....+.... +..+...|...|++++|.+.|++...
T Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111122335567777888888 7888888887643322222 55677788888888888888877543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=98.93 Aligned_cols=168 Identities=18% Similarity=0.155 Sum_probs=133.4
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK-------TFPISEGVFNALIYGHSQANDMASAEGILTMMSQA-- 188 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-- 188 (902)
..++..+ ...+...|++++|..+|+.+.+. +.+....++..+...|...|++++|+..|++....
T Consensus 27 ~~~~~~l------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 27 LRTLHNL------VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556666 88999999999999999998763 33445677899999999999999999999988764
Q ss_pred ----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccC------C-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 189 ----GLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ------S-ELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 189 ----g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~------~-~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
+-.| ...++..+...|...|++++|...++..... + .......+..+..++...|++++|..++++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2223 3457888999999999999999999888753 2 23344556667777888999999999999887
Q ss_pred HC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 257 QA------GLEP-SAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 257 ~~------g~~p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
.. +-.| ...++..+...|...|++++|.+.|++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 2223 35578889999999999999999999854
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-05 Score=91.71 Aligned_cols=424 Identities=11% Similarity=0.041 Sum_probs=262.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCC---HHHHHHHHHHhhhCC-
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN---IEGATKILEFMRDKT- 154 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~---~~~A~~l~~~m~~~~- 154 (902)
-+-|...|..++..+.+.+.++.+..+|+.+... ++.....|..- +..-.+.|+ ++.+..+|+......
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Y------i~~E~~~~~~~~~~~v~~lfeRal~~~~ 134 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMR------LSLEFDKMEELDAAVIEPVLARCLSKEL 134 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH------HHHHHTC--CCCHHHHHHHHHHHTCSSS
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHH------HHHHHhhCCcchHHHHHHHHHHHHHhcC
Confidence 3458999999999999999999999999999975 34456667777 888888888 999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------HcCChhHHH
Q psy767 155 FPISEGVFNALIYGHSQANDM--------ASAEGILTMMSQ-AGL-EPS-AQTYTKLMCGYA---------KHGDMDSIK 214 (902)
Q Consensus 155 ~~p~~~~yn~Li~~~~~~g~~--------~~A~~l~~~M~~-~g~-~pd-~~ty~~ll~a~~---------~~g~~~~a~ 214 (902)
.+|++..|..-+.-..+.++. +.+.++|+.... .|. .|+ ...|...+.... ..++++.+.
T Consensus 135 ~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R 214 (679)
T 4e6h_A 135 GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR 214 (679)
T ss_dssp CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHH
Confidence 248889999888766665543 334477776554 476 564 457777665433 234567788
Q ss_pred HHHHhcccCCCccchhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHH--CCCC---------------C--
Q psy767 215 TKIPSLKPQSELFLCFSFQLTNLLILV-------------SSDMASAEGILTMMSQ--AGLE---------------P-- 262 (902)
Q Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~A~~l~~~m~~--~g~~---------------p-- 262 (902)
++|+.............+..+..+-.. ..+++.|...+.++.. .++. |
T Consensus 215 ~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~ 294 (679)
T 4e6h_A 215 KLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKP 294 (679)
T ss_dssp HHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCT
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCC
Confidence 999988864332222333222222111 1233445555544332 1211 1
Q ss_pred ---C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHhccC-CCCCC-HHHHHHHHHHcCCcccHH-HHHHHHHHhh
Q psy767 263 ---S---AQTYTKLMCGYAKHG-------DMDSVRRLLAQSGSS-LVNGD-YLDIIHALAVSGHGEYID-EVSAIVCFVN 326 (902)
Q Consensus 263 ---d---~~ty~~LI~a~~~~g-------~~~~A~~lf~~m~~~-~~~p~-~~tl~~~l~~~~~~~~~~-~~~~l~~~~~ 326 (902)
+ ...|...|.---..+ ..+.+..+|++.... +..|+ |..+...+...+....+. .+..
T Consensus 295 ~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~------ 368 (679)
T 4e6h_A 295 NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLK------ 368 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHH------
T ss_pred chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHH------
Confidence 0 234555444322222 122344556654332 22222 444444444444433221 2211
Q ss_pred hhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC------------CC------------cccHH
Q psy767 327 ICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSS------------LV------------NGDYL 382 (902)
Q Consensus 327 ~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~------------~~------------~~~~~ 382 (902)
... .-++.+...|-..+..+.+.|+++.|..+|++.-.. |. ...|.
T Consensus 369 ---------rAi-~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 369 ---------LGQ-QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp ---------HHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ---------HHH-HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 111 123446677888888999999999999999874321 21 11277
Q ss_pred HHHHHHHHcCChHHHHHHHHHcccC-CCCCCCHHH-HHHHHHHc-CCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhh
Q psy767 383 DIIHALAVSGHGEYIDEIISKIQPG-VGYSADAAN-HIYHLINK-GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMV 459 (902)
Q Consensus 383 ~li~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t-~i~~l~~~-g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~ 459 (902)
..+....+.|..+.|..+|.+.... ....+..+. +...-.+. ++++.|..+|+...+.++-.+.
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~------------- 505 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE------------- 505 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH-------------
Confidence 7777778888999999999998763 122232222 11111233 4589999999998887433221
Q ss_pred hcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 460 KTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 460 ~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
.....+......|+.+.|..+|+........+......|...+..-.+.|. .+.+..+.++|.+. .
T Consensus 506 -----------~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-~~~~~~v~~R~~~~--~ 571 (679)
T 4e6h_A 506 -----------YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-LNSVRTLEKRFFEK--F 571 (679)
T ss_dssp -----------HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHH--S
T ss_pred -----------HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--C
Confidence 011233445578999999999999887643222344688999999999999 89999999999885 5
Q ss_pred CChhhHHHHHHHh
Q psy767 540 PRAFNLAVLIKAH 552 (902)
Q Consensus 540 Pd~~t~~~ll~a~ 552 (902)
|+......+++-+
T Consensus 572 P~~~~~~~f~~ry 584 (679)
T 4e6h_A 572 PEVNKLEEFTNKY 584 (679)
T ss_dssp TTCCHHHHHHHHT
T ss_pred CCCcHHHHHHHHh
Confidence 7766666666554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-06 Score=93.19 Aligned_cols=202 Identities=9% Similarity=-0.011 Sum_probs=160.8
Q ss_pred CCCHHHHHHHHHHHH-------HCCCc-------hHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHH
Q psy767 80 PLDISHYNALLRVYL-------DNEHT-------FSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGAT 144 (902)
Q Consensus 80 ~pd~~~yn~li~~~~-------~~g~~-------~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~ 144 (902)
+-+...|..+...+. +.|++ ++|..+|++..+. +.| +...|..+ ...+.+.|++++|.
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~------~~~~~~~~~~~~A~ 119 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAY------ADYEESRMKYEKVH 119 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHH------HHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHH------HHHHHhcCCHHHHH
Confidence 346778888888776 45887 8999999999863 345 45678888 99999999999999
Q ss_pred HHHHHhhhCCCCCC-HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHhcc
Q psy767 145 KILEFMRDKTFPIS-EG-VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYA-KHGDMDSIKTKIPSLK 221 (902)
Q Consensus 145 ~l~~~m~~~~~~p~-~~-~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~-~~g~~~~a~~l~~~~~ 221 (902)
.+|+...+. .|+ .. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++|..+|+...
T Consensus 120 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al 196 (308)
T 2ond_A 120 SIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 196 (308)
T ss_dssp HHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999874 454 33 899999999999999999999999998642 34445544333322 3799999999999887
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 222 PQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAG-LEP--SAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g-~~p--d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
...+ .+...+..+..++...|+++.|..+|++..... +.| ....|..++..+.+.|+.++|..+++++..
T Consensus 197 ~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 197 KKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6433 245566777777888999999999999999863 455 577899999999999999999999998654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=106.35 Aligned_cols=217 Identities=11% Similarity=0.003 Sum_probs=172.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q psy767 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM-ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKI 217 (902)
Q Consensus 139 ~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~ 217 (902)
.++++...++...... +.+...|..+-..|...|++ ++|++.|++..+.. .-+...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777777765543 45788899999999999999 99999999998874 225779999999999999999999999
Q ss_pred HhcccCCCccchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCH
Q psy767 218 PSLKPQSELFLCFSFQLTNLLILVS---------SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH--------GDM 280 (902)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~--------g~~ 280 (902)
+........ ...+..+..++... |++++|...|++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999887644 46677777777778 99999999999998864 55688999999999999 999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcC
Q psy767 281 DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360 (902)
Q Consensus 281 ~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g 360 (902)
++|++.|++.... .....-+...|..+..+|...|
T Consensus 238 ~~A~~~~~~al~~---------------------------------------------~p~~~~~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 238 QQALSAYAQAEKV---------------------------------------------DRKASSNPDLHLNRATLHKYEE 272 (474)
T ss_dssp HHHHHHHHHHHHH---------------------------------------------CGGGGGCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------------------------------------------CCCcccCHHHHHHHHHHHHHcC
Confidence 9999999873210 0000136788899999999999
Q ss_pred CHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 361 DMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 361 ~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
++++|...|++ +...|..+. +..+...+...|++++|++.+.++.
T Consensus 273 ~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999987 344444443 7778888888888888887766553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-06 Score=86.08 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=115.0
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
+..+|..+ -..|.+.|++++|.+.|++..+.+ |-+..+|..+...|.+.|++++|+..+........ -+...
T Consensus 4 ~~~iy~~l------G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDI------GDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEA 75 (184)
T ss_dssp CHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHH
T ss_pred HHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHH
Confidence 45566666 777777778888877777776654 44667777777777777777777777777766532 24445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 276 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~ 276 (902)
+..+...+...++++.+...+.. ..... +.+...+..+...|.+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~-----------------------------------a~~~~-~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQR-----------------------------------AIALN-TVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------------------------------HHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-----------------------------------HHHhC-ccchHHHHHHHHHHHH
Confidence 55555666666666655554443 33322 5567788899999999
Q ss_pred cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGY 356 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y 356 (902)
.|++++|++.|++... . -+-+..+|..+..+|
T Consensus 120 ~g~~~~A~~~~~~~l~-----------------------------------------------~-~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 120 MGEHDKAIEAYEKTIS-----------------------------------------------I-KPGFIRAYQSIGLAY 151 (184)
T ss_dssp TTCHHHHHHHHHHHHH-----------------------------------------------H-CTTCHHHHHHHHHHH
T ss_pred hCCchhHHHHHHHHHH-----------------------------------------------h-cchhhhHHHHHHHHH
Confidence 9999999999987321 1 123567788888888
Q ss_pred HHcCCHHHHHHHHHH
Q psy767 357 AKHGDMDSIRRLLAQ 371 (902)
Q Consensus 357 ~~~g~~~~A~~~~~~ 371 (902)
.+.|++++|...|++
T Consensus 152 ~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 888998888888876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-07 Score=88.26 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
..|..+...+...|++++|...|+++.+.. +.+..++..+ ...+...|++++|...++...+.. +.+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHL------GIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345566666667777777777776665432 2245555555 666667777777777777665543 34556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcC
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS 243 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 243 (902)
.+...+...|++++|.+.|+++.... ..+...+..+...+...|++++|...++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~------------------------- 134 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFK------------------------- 134 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------
Confidence 66677777777777777777666543 2345555556666666666665555444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 244 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
+..... +.+..+|..+...|...|++++|...|++..
T Consensus 135 ----------~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 135 ----------IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp ----------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 443332 4456778888888888889988888888753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=105.35 Aligned_cols=199 Identities=8% Similarity=-0.078 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q psy767 81 LDISHYNALLRVYLDNEHT-FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISE 159 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 159 (902)
.+...|..+...|...|++ ++|...|++..+... -+...|..+ ...|.+.|++++|...|+...+.+ |+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~~~--p~~ 170 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQL------GEVYWKKGDVTSAHTCFSGALTHC--KNK 170 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHTTC--CCH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhC--CCH
Confidence 4778899999999999999 999999999887542 257788888 999999999999999999988764 677
Q ss_pred HHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CChhHHHHHHHhccc
Q psy767 160 GVFNALIYGHSQA---------NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH--------GDMDSIKTKIPSLKP 222 (902)
Q Consensus 160 ~~yn~Li~~~~~~---------g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~--------g~~~~a~~l~~~~~~ 222 (902)
..|..+...|... |++++|+..|++..+.. .-+...|..+..+|... |++++|...|+....
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 8899999999999 99999999999998874 23577899999999988 999999999999887
Q ss_pred CCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 223 QSEL--FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 223 ~~~~--~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
.... .....+..+..++...|++++|...|++..+.. +.+...|..+...+...|++++|++.+.++
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6432 456677778888888999999999999988764 456778889999999999999999877654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-07 Score=86.78 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=138.9
Q ss_pred HHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHH
Q psy767 43 VLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQ 122 (902)
Q Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 122 (902)
...+..+...+...|++++|...|+.+.. -.+.+...|..+...|...|++++|...++++.+.. +.+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 34455667777888999999999998886 233467889999999999999999999999988753 33667777
Q ss_pred HHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q psy767 123 QLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMC 202 (902)
Q Consensus 123 ~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~ 202 (902)
.+ ...+...|++++|...|+.+.... +.+...|..+...+...|++++|...|++..... ..+..++..+..
T Consensus 81 ~~------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 152 (186)
T 3as5_A 81 VL------GLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAF 152 (186)
T ss_dssp HH------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HH------HHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHH
Confidence 77 889999999999999999988764 5677889999999999999999999999998874 336778889999
Q ss_pred HHHHcCChhHHHHHHHhccc
Q psy767 203 GYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 203 a~~~~g~~~~a~~l~~~~~~ 222 (902)
.+...|++++|...++....
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999988887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-05 Score=87.11 Aligned_cols=273 Identities=12% Similarity=0.053 Sum_probs=160.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCC-H----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPIS-E----GVFNALIYGHSQANDMASAEGILTMMSQAGL-EPSA----QTYTKL 200 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~-~----~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~----~ty~~l 200 (902)
...+...|++++|...++...... +++ . .+++.+...+...|++++|...+++.....- .++. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445567899999999998876643 222 2 2466677788889999999999988754310 1122 234556
Q ss_pred HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHc
Q psy767 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE--P-SAQTYTKLMCGYAKH 277 (902)
Q Consensus 201 l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~--p-d~~ty~~LI~a~~~~ 277 (902)
...+...|++++|...++.... +.. ..+.. | ...++..+...|...
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~----------------------------~~~---~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQ----------------------------LIN---EQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----------------------------HHH---HTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----------------------------HHH---HhccccCcHHHHHHHHHHHHHHHh
Confidence 6667777777777766654322 111 11211 2 234556667777888
Q ss_pred CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHH
Q psy767 278 GDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYA 357 (902)
Q Consensus 278 g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~ 357 (902)
|++++|...+++.... ....+......+|..+...+.
T Consensus 149 g~~~~A~~~~~~al~~-------------------------------------------~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 149 ARLDEAEASARSGIEV-------------------------------------------LSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TCHHHHHHHHHHHHHH-------------------------------------------TTTSCGGGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH-------------------------------------------hhccCcHHHHHHHHHHHHHHH
Confidence 8888888888763211 011111112356667777888
Q ss_pred HcCCHHHHHHHHHHc----CCCCCcccHHH-----HHHHHHHcCChHHHHHHHHHcccCCCCCCCH------HHHHHHHH
Q psy767 358 KHGDMDSIRRLLAQN----GSSLVNGDYLD-----IIHALAVSGHGEYIDEIISKIQPGVGYSADA------ANHIYHLI 422 (902)
Q Consensus 358 ~~g~~~~A~~~~~~m----~~~~~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~------~t~i~~l~ 422 (902)
..|++++|...+++. ...+....|.. .+..+...|++++|.+.+++... ....+.. ..+...+.
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHHHHHHHHHHH
Confidence 888888888888762 22212122322 23346688888888888888776 2211111 12344566
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcccc-chHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy767 423 NKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSA-DAANHIYHLINKGQIDAAYRIVNTLARS 498 (902)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~li~~~~k~g~~~~A~~l~~~m~~~ 498 (902)
..|++++|...++.......-.+... ... ....+...+...|+.++|...++.....
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~-------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMS-------------------DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHH-------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchh-------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88889988888887765321111000 000 0112334477888888888888776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=9.5e-06 Score=89.18 Aligned_cols=197 Identities=9% Similarity=-0.087 Sum_probs=123.2
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh----CCCCC-C
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV----TYQQLISNSKLISKYCQDGNIEGATKILEFMRD----KTFPI-S 158 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p-~ 158 (902)
.....+...|++++|...+++........+.. +++.+ ...+...|++++|...+++... .+... .
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVL------GEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34445667999999999999988754322332 23334 6778889999999999988653 22110 1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc----c
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQA----GLE--PS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL----F 227 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~--pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~----~ 227 (902)
..+++.+...+...|++++|...|++.... |.. |. ..++..+...+...|++++|...++........ .
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 234667788899999999999999987653 222 32 345666778889999999999888776542211 1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHh
Q psy767 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS-AQTYT-----KLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~-----~LI~a~~~~g~~~~A~~lf~~m 290 (902)
....+..+..++...|++++|...+++.....-.++ ...|. ..+..+...|++++|...+++.
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 123344445555566777777777766554211111 01111 1223355666666666666653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-06 Score=93.09 Aligned_cols=230 Identities=8% Similarity=-0.011 Sum_probs=136.5
Q ss_pred HHHHcCCHHHHHHHHHHhhhCC--CC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHH
Q psy767 133 KYCQDGNIEGATKILEFMRDKT--FP---ISEGVFNALIYGHSQANDMASAEGILTMMSQA----G-LEP-SAQTYTKLM 201 (902)
Q Consensus 133 ~~~~~g~~~~A~~l~~~m~~~~--~~---p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g-~~p-d~~ty~~ll 201 (902)
.+...|++++|...|+.....- ++ ....+|..+...|...|+++.|+..+++..+. + ..+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3456777777777777765421 11 12345667777777777777777777766542 1 011 134566677
Q ss_pred HHHHHcCChhHHHHHHHhcccC----C-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q psy767 202 CGYAKHGDMDSIKTKIPSLKPQ----S-ELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ-----AGLEPSAQTYTKLM 271 (902)
Q Consensus 202 ~a~~~~g~~~~a~~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~ty~~LI 271 (902)
..|...|++++|...+...... + .......+..+..++...|+++.|...+++... .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 7777777777777777665442 1 111223444555566667777777777777665 32 22356677777
Q ss_pred HHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHH
Q psy767 272 CGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTK 351 (902)
Q Consensus 272 ~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ 351 (902)
..|.+.|++++|...|++.... ....+-......+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~-------------------------------------------~~~~~~~~~~~~~~~ 305 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDH-------------------------------------------ITARSHKFYKELFLF 305 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------------------------------------------CCTTCCSCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-------------------------------------------HHHcCCHHHHHHHHH
Confidence 7777777777777777763211 011111222334555
Q ss_pred HHHHHHHcCC---HHHHHHHHHHcCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHccc
Q psy767 352 LMCGYAKHGD---MDSIRRLLAQNGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQP 406 (902)
Q Consensus 352 Li~~y~~~g~---~~~A~~~~~~m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 406 (902)
+-..|...|+ +++|+..+++....+.... +..+...|...|++++|.+.|++..+
T Consensus 306 l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 306 LQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666777 7777777777433222222 45677777778888877777776543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=99.31 Aligned_cols=305 Identities=11% Similarity=0.032 Sum_probs=166.6
Q ss_pred HHHCCCc---hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcC-----CHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 93 YLDNEHT---FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG-----NIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 93 ~~~~g~~---~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g-----~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
|...|++ ++|...|++..+. +...+..+ -..+...| ++++|...|+...+.|.+ ..+..
T Consensus 45 y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L------g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~ 111 (452)
T 3e4b_A 45 QVGTRDPAQIKQAEATYRAAADT----SPRAQARL------GRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIP 111 (452)
T ss_dssp ------------------------------CHHHH------HHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHH
T ss_pred HHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH------HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHH
Confidence 3444555 7788888777643 33334444 44344444 677888888887776632 36666
Q ss_pred HHHHHHhCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHhcccCCCccchhhHHHHHH
Q psy767 165 LIYGHSQANDM---ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDS----IKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 165 Li~~~~~~g~~---~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~----a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
|-..|...+.. .++.+.+......| +...+..|...|...+.+++ +..++...... ++..+..+..
T Consensus 112 Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~ 184 (452)
T 3e4b_A 112 LAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELAT 184 (452)
T ss_dssp HHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHH
Confidence 66777665543 33455555555544 23455556666666664444 33344443332 2225566666
Q ss_pred HHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcC
Q psy767 238 LILVSS---DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH----GDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSG 310 (902)
Q Consensus 238 ~~~~~g---~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~----g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~ 310 (902)
++...| +.++|...|+.....| .++...+..|-..|... +++++|+++|++.. .+
T Consensus 185 ~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---------------- 246 (452)
T 3e4b_A 185 VYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---------------- 246 (452)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----------------
T ss_pred HHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----------------
Confidence 666677 8888888888888887 56666666666666554 68889999988743 11
Q ss_pred CcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHcCCCCCcccHHHHHHH
Q psy767 311 HGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCG-Y--AKHGDMDSIRRLLAQNGSSLVNGDYLDIIHA 387 (902)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~-y--~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~ 387 (902)
+...+..|-.. | ...+++++|...|++--..+....+..+...
T Consensus 247 ----------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 292 (452)
T 3e4b_A 247 ----------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKL 292 (452)
T ss_dssp ----------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23334444444 2 3467788888888775444444446666666
Q ss_pred HHHcC-----ChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhccCCCCCcccchhhHHHh
Q psy767 388 LAVSG-----HGEYIDEIISKIQPGVGYSADAANHIYHLINKG-----QIDAAYRIVNTLARSANINGEQLPVGGFLVRH 457 (902)
Q Consensus 388 ~~~~g-----~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g-----~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~ 457 (902)
|. .| ++++|.+.|++.. . -.|+....+..+...| +.++|..+|++..+...
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa--~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--------------- 353 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV--G-REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--------------- 353 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT--T-TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---------------
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh--C-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---------------
Confidence 65 45 7788888887765 2 2222222233333334 78888888887765321
Q ss_pred hhhcCCCCCccccchHHHHHHHHh----cCChHHHHHHHHHHHHcc
Q psy767 458 MVKTNQPGVGYSADAANHIYHLIN----KGQIDAAYRIVNTLARSA 499 (902)
Q Consensus 458 ~~~~~~~~~g~~~~~~~li~~~~k----~g~~~~A~~l~~~m~~~~ 499 (902)
....+++-.+|.. ..+.++|..+|+.....+
T Consensus 354 -----------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 354 -----------NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp -----------TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred -----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 1123444444442 347888888888877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.3e-06 Score=90.48 Aligned_cols=312 Identities=12% Similarity=0.053 Sum_probs=188.1
Q ss_pred CCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHH--HHcCChhHHH---------HHHH
Q psy767 156 PISEGVFNALIYGH--SQANDMASAEGILTMMSQA--GLEPSA--QTYTKLMCGY--AKHGDMDSIK---------TKIP 218 (902)
Q Consensus 156 ~p~~~~yn~Li~~~--~~~g~~~~A~~l~~~M~~~--g~~pd~--~ty~~ll~a~--~~~g~~~~a~---------~l~~ 218 (902)
.|+..+-+.|-..| .+.+++++|..++++.... .+..|. ..|-.++..- .-.+....+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444444455455 6677777777777776542 222232 2333333321 1112222222 4444
Q ss_pred hcccCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 219 SLKPQSELFLC----FSFQLTNLLILVSSDMASAEGILTMMSQAGL-EPS----AQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 219 ~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.+.......+. ..+......+...|+++.|...|++....-- .++ ..+|..+...|...|++++|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44332111111 0122233334568999999999998875321 122 45788888999999999999999987
Q ss_pred hccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCC-CC-CHHHHHHHHHHHHHcCCHHHHHH
Q psy767 290 SGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGL-EP-SAQTYTKLMCGYAKHGDMDSIRR 367 (902)
Q Consensus 290 m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~-~p-~~~t~~~Li~~y~~~g~~~~A~~ 367 (902)
.... ....+- .+ ...+++.+..+|...|++++|..
T Consensus 167 al~~-------------------------------------------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 203 (378)
T 3q15_A 167 ALDI-------------------------------------------YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALP 203 (378)
T ss_dssp HHHH-------------------------------------------HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH-------------------------------------------HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3210 111111 11 24678889999999999999999
Q ss_pred HHHHc----CCCCCcc----cHHHHHHHHHHcCChHHHHHHHHHcccCC--CCCCCHHH----HHHHHHHcCCHHHHHHH
Q psy767 368 LLAQN----GSSLVNG----DYLDIIHALAVSGHGEYIDEIISKIQPGV--GYSADAAN----HIYHLINKGQIDAAYRI 433 (902)
Q Consensus 368 ~~~~m----~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~--g~~pd~~t----~i~~l~~~g~~~~A~~~ 433 (902)
.|.+. ...+... .+..+...|...|++++|.+.|++..... .-.|.... +-..+.+.|++++|...
T Consensus 204 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 283 (378)
T 3q15_A 204 HLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF 283 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 98872 1111221 26778899999999999999999876510 02233322 34456799999999999
Q ss_pred HHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHH-HHHhcCC---hHHHHHHHHHHHHccCCCCCccchH
Q psy767 434 VNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIY-HLINKGQ---IDAAYRIVNTLARSANINGEQLPVG 509 (902)
Q Consensus 434 ~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~-~~~k~g~---~~~A~~l~~~m~~~~~~~~~~~~~~ 509 (902)
+++..+.....+... +. ..+..+. .|...|+ +.+|..+++..... +.....+
T Consensus 284 ~~~al~~~~~~~~~~-------------------~~-~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~----~~~~~~~ 339 (378)
T 3q15_A 284 IEEGLDHITARSHKF-------------------YK-ELFLFLQAVYKETVDERKIHDLLSYFEKKNLH----AYIEACA 339 (378)
T ss_dssp HHHHHHHCCTTCCSC-------------------HH-HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH----HHHHHHH
T ss_pred HHHHHHHHHHcCCHH-------------------HH-HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh----hHHHHHH
Confidence 999887543322211 11 1223333 3556677 78888887763221 1123466
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 510 GFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 510 n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
..+...|...|+ .++|...|++..+
T Consensus 340 ~~la~~y~~~g~-~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCH-FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 788999999999 9999999998654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-06 Score=95.44 Aligned_cols=227 Identities=9% Similarity=-0.031 Sum_probs=168.3
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCC-CCCC----HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----C--CCC
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQG-IEPN----RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK----T--FPI 157 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g-~~pd----~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~--~~p 157 (902)
....+...|++++|...|++..+.- -.+| ..+|..+ ...|...|+++.|...++...+. + .+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM------SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 4455778999999999999987631 1123 3456666 88899999999999999886542 1 111
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHhccc-----CCCcc
Q psy767 158 SEGVFNALIYGHSQANDMASAEGILTMMSQAGL-EPS----AQTYTKLMCGYAKHGDMDSIKTKIPSLKP-----QSELF 227 (902)
Q Consensus 158 ~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-----~~~~~ 227 (902)
...+++.+-..|...|++++|+..|++..+..- .++ ..++..+...|...|++++|...+++... .....
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 235788899999999999999999998865311 112 24788899999999999999999988876 33244
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHhccCCCCCCHH
Q psy767 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQA----GLEPSAQTYTKLMCGYAKHGD---MDSVRRLLAQSGSSLVNGDYL 300 (902)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~ty~~LI~a~~~~g~---~~~A~~lf~~m~~~~~~p~~~ 300 (902)
....+..+..++...|++++|...+++.... +-+.....++.+-..|...|+ +++|+.++++.
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---------- 332 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---------- 332 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----------
Confidence 5667777888888999999999999987653 112223345667778888888 77777777752
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 301 DIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 301 tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
+..| ...++..+...|...|++++|...|++
T Consensus 333 ----------------------------------------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 333 ----------------------------------------MLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1112 234667788999999999999999986
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.52 E-value=9.4e-07 Score=92.31 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=93.8
Q ss_pred HCCCchHHHHHHHHHHHCC---CCCC-HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC------C-CCCCHHHHH
Q psy767 95 DNEHTFSPTDFLAKLESQG---IEPN-RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK------T-FPISEGVFN 163 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g---~~pd-~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~------~-~~p~~~~yn 163 (902)
..|++++|..+|++..+.- ..++ ......+ ..+...|...|++++|...|+..... + -+....+|+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATML---NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4567777777777655421 1112 2222222 34455566667777777777665432 1 122345566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQA------GLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
.+...|...|++++|+..|++.... .-.| ...+|..+...|...|++++|...++....
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------- 155 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-------------- 155 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 6667777777777777777666543 1011 233455555556666666655555543221
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
++........+....++..+...|...|++++|...|++..
T Consensus 156 --------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 156 --------------IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp --------------HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --------------HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22211111112235678889999999999999999999854
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.52 E-value=5.2e-07 Score=94.29 Aligned_cols=236 Identities=11% Similarity=0.060 Sum_probs=143.6
Q ss_pred cccCCCCCCcCcccccCccccccCCCCCC-CCHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHCC---C-CCCHHHHHHHH
Q psy767 52 KWCSEPSLGPGNLPCEDPFSVHTGELDVP-LDISHYNALLRVYLDNEHT-FSPTDFLAKLESQG---I-EPNRVTYQQLI 125 (902)
Q Consensus 52 ~~~~~g~~~~A~~~f~~~~~~~~~~~g~~-pd~~~yn~li~~~~~~g~~-~~A~~l~~~M~~~g---~-~pd~~t~~~ll 125 (902)
.....|+++.|...|++......+..+.. |+....-..+..+.....- ++|...|++..+.. . ..+......
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-- 87 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT-- 87 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH--
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH--
Confidence 45677889999999988887433222222 2222222223333333333 35888888876531 1 212332222
Q ss_pred HhHHHHHHHHHcCCHHHHHHHHHHhhhC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC
Q psy767 126 SNSKLISKYCQDGNIEGATKILEFMRDK------T-FPISEGVFNALIYGHSQANDMASAEGILTMMSQA------GLEP 192 (902)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------~-~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~------g~~p 192 (902)
...+...|...|++++|...|+..... . .+....+|..+...|...|++++|+.+|++..+. +-.|
T Consensus 88 -~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 88 -LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred -HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 356677888999999999999987653 1 2334677899999999999999999999999765 1123
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHhcccC-------CCcc-chhhHHHHHHHHHhc------CCHHHHHHHHHHHHH
Q psy767 193 -SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ-------SELF-LCFSFQLTNLLILVS------SDMASAEGILTMMSQ 257 (902)
Q Consensus 193 -d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-------~~~~-~~~~~~~~~~~~~~~------g~~~~A~~l~~~m~~ 257 (902)
...++..+...|...|++++|...++..... ...+ ....+.......... ..+..+...+.....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 3457888999999999999999999988652 1111 111222222222221 122222222222111
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 258 AGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 258 ~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
..+....+|..+...|...|++++|..+|++..
T Consensus 247 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 247 -DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112235578889999999999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=102.74 Aligned_cols=164 Identities=12% Similarity=0.033 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|+.+-..|.+.|++++|++.|++..+.... +...|..+ -.+|.+.|++++|...|++..+.+ +-+...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nL------g~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNL------ASVLQQQGKLQEALMHYKEAIRIS-PTFADA 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 4567888999999999999999999988865321 46777778 888889999999999998887764 446788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
|+.+-.+|.+.|++++|++.|++..+.. .-+...|..+..+|...|++++|...|++..+
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~------------------- 139 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK------------------- 139 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 8889999999999999999998888763 12456788888888888888877766665443
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
.. +-+...|..+...|...|++++|.+.|++.
T Consensus 140 ----------------l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 140 ----------------LK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp ----------------HC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred ----------------hC-CCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 21 345677888888888888888888888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-06 Score=76.30 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
.|..+...|...|++++|..+|+++.+... .+...+..+ ...+...|++++|..+|+.+...+ +.+...|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNL------GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHH------HHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 577788888889999999999998876542 356677777 888888999999999999887764 456778888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 165 LIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 165 Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
+...+...|++++|.++|+++.... ..+..++..+...+...|++++|...++.+..
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8889999999999999999888764 23567777888888888888888777776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-05 Score=80.28 Aligned_cols=197 Identities=9% Similarity=-0.024 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.|...|......+...|++++|...|++..+....++...+..+ ..++.+.|++++|...|+...+.+ +-+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 77 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNC------GVCADNIKKYKEAADYFDIAIKKN-YNLAN 77 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHTT-CSHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHH------HHHHHHhhcHHHHHHHHHHHHHhC-cchHH
Confidence 46688889999999999999999999999887654677777778 889999999999999999988765 45678
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc-chhhH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSA-------QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF-LCFSF 232 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~-~~~~~ 232 (902)
.|..+...|...|++++|+..|++..+... .+. ..|..+-..+...|++++|...|+......+.. ....+
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 899999999999999999999999988632 234 457777888889999999999999988764330 22333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 233 QLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 233 ~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
..+..++.. .+..+++.+...+ ..+...|.... ....+.+++|+..|++....
T Consensus 157 ~~l~~~~~~-----~~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 157 YSLGVLFYN-----NGADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 334444432 3334445554443 33344444443 23445678999999886553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.7e-06 Score=83.94 Aligned_cols=195 Identities=8% Similarity=-0.012 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH
Q psy767 158 SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 158 ~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
|...|...-..+.+.|++++|+..|++..+....++...+..+..++...|++++|...++......
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------- 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------------- 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------------
Confidence 4567777778888888888888888888776533677777777777777777776666665544321
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHH
Q psy767 238 LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDE 317 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~ 317 (902)
+.+..+|..+...|...|++++|+..|++....
T Consensus 73 -----------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------ 105 (228)
T 4i17_A 73 -----------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA------------------------ 105 (228)
T ss_dssp -----------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred -----------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------
Confidence 334567778888888889999999888873221
Q ss_pred HHHHHHHhhhhhcccccchHHhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC--ccc-HHHHHHHH
Q psy767 318 VSAIVCFVNICFHWLEGPMMSQAGLEPSA-----QTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLV--NGD-YLDIIHAL 388 (902)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~m~~~g~~p~~-----~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~--~~~-~~~li~~~ 388 (902)
..-.+.. .+|..+-..+...|++++|...|++. ...|. .+. |..+...|
T Consensus 106 ----------------------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 106 ----------------------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp ----------------------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 1101111 45777778889999999999999984 44444 222 56666666
Q ss_pred HHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 389 AVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 389 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
...|+ .+++++.......+..+. -......+.+++|...+++..+.
T Consensus 164 ~~~~~-----~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGA-----DVLRKATPLASSNKEKYA-SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHGGGTTTCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHhcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55443 334444441111111111 11122445567777777776654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.6e-06 Score=74.66 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=90.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|++++|..+|+.+...+ +.+...|..+...+...|++++|..+|+++...+ ..+...+..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCH
Confidence 777888888888888888887654 4466778888888888888888888888887764 23556666777777777777
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
++|.+.++.+.. .. +.+..+|..+...|.+.|++++|...|.++
T Consensus 86 ~~A~~~~~~~~~-----------------------------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 86 DEAIEYYQKALE-----------------------------------LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHH-----------------------------------HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------------------------hC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 766665554433 21 345667777888888888888888888875
Q ss_pred c
Q psy767 291 G 291 (902)
Q Consensus 291 ~ 291 (902)
.
T Consensus 130 ~ 130 (136)
T 2fo7_A 130 L 130 (136)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-05 Score=81.18 Aligned_cols=200 Identities=13% Similarity=0.024 Sum_probs=132.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCC-ccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 178 AEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE-LFLCFSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 178 A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
|+..|++....+ .++..++..+..++...|++++|++++......+. ......+...+.++...|+.+.|.++++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776655 45666666777788888888888888877654443 3455566667777777888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhh
Q psy767 257 QAGLEP-----SAQTYTKLMCG--YAKHG--DMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNI 327 (902)
Q Consensus 257 ~~g~~p-----d~~ty~~LI~a--~~~~g--~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~ 327 (902)
+. .| +..+..-|..+ ....| +..+|+.+|+++...
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---------------------------------- 207 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---------------------------------- 207 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----------------------------------
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----------------------------------
Confidence 64 56 35555666656 33334 899999999885322
Q ss_pred hhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-----------CCCccc-HHHHHHHHHHcCChH
Q psy767 328 CFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS-----------SLVNGD-YLDIIHALAVSGHGE 395 (902)
Q Consensus 328 ~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~-~~~li~~~~~~g~~~ 395 (902)
.|+..+-..++.++.+.|++++|...++.+.. .+..++ ...+|......|+
T Consensus 208 ---------------~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 208 ---------------FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp ---------------SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred ---------------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 23333334444589999999999999987433 244444 3345555556676
Q ss_pred HHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q psy767 396 YIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSA 441 (902)
Q Consensus 396 ~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~ 441 (902)
+|.++++++.. ..|+..-+.. +.+....|+++..+|
T Consensus 271 ~a~~l~~qL~~---~~P~hp~i~d-------~~~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 271 DTEDLTNQLVK---LDHEHAFIKH-------HQEIDAKFDELVRKY 306 (310)
T ss_dssp TTHHHHHHHHH---TTCCCHHHHH-------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH---hCCCChHHHH-------HHHHHHHHHHHHHHh
Confidence 88999999988 7787754432 344455566665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-05 Score=83.25 Aligned_cols=218 Identities=12% Similarity=-0.022 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChhHH
Q psy767 139 NIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA----GLEPS-AQTYTKLMCGYAKHGDMDSI 213 (902)
Q Consensus 139 ~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~pd-~~ty~~ll~a~~~~g~~~~a 213 (902)
++++|...|+.. ...|...|++++|...|.+.... |-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366676666665 33566677788777777766442 21112 34677777777788888877
Q ss_pred HHHHHhcccCC----Cc-cchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHH
Q psy767 214 KTKIPSLKPQS----EL-FLCFSFQLTNLLILVS-SDMASAEGILTMMSQAGLE-PS----AQTYTKLMCGYAKHGDMDS 282 (902)
Q Consensus 214 ~~l~~~~~~~~----~~-~~~~~~~~~~~~~~~~-g~~~~A~~l~~~m~~~g~~-pd----~~ty~~LI~a~~~~g~~~~ 282 (902)
...++...... .. .....+..+..++... |++++|...|++.....-. .+ ..+|+.+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77776654421 11 1123455556666665 8888888888877653110 11 3568889999999999999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCC-CC-HHHHHHHHHHHHHcC
Q psy767 283 VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLE-PS-AQTYTKLMCGYAKHG 360 (902)
Q Consensus 283 A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~-p~-~~t~~~Li~~y~~~g 360 (902)
|+..|++....... .+.. .. ..+|..+..+|...|
T Consensus 177 A~~~~~~al~~~~~-------------------------------------------~~~~~~~~~~~~~~lg~~~~~~g 213 (292)
T 1qqe_A 177 ASDIYSKLIKSSMG-------------------------------------------NRLSQWSLKDYFLKKGLCQLAAT 213 (292)
T ss_dssp HHHHHHHHHHTTSS-------------------------------------------CTTTGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc-------------------------------------------CCcccHHHHHHHHHHHHHHHHcC
Confidence 99999974322110 0000 01 126777888999999
Q ss_pred CHHHHHHHHHHc-CCCCCccc------HHHHHHHHH--HcCChHHHHHHHHHcccCCCCCCCHHHH
Q psy767 361 DMDSIRRLLAQN-GSSLVNGD------YLDIIHALA--VSGHGEYIDEIISKIQPGVGYSADAANH 417 (902)
Q Consensus 361 ~~~~A~~~~~~m-~~~~~~~~------~~~li~~~~--~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 417 (902)
++++|...|++. ...|.... +..++.++. ..+++++|++.|+.+.. +.|+..++
T Consensus 214 ~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~---l~~~~~~~ 276 (292)
T 1qqe_A 214 DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR---LDKWKITI 276 (292)
T ss_dssp CHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC---CCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc---cHHHHHHH
Confidence 999999999983 33333222 233555554 34567888888888866 77765443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=101.53 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCC-CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCH
Q psy767 40 VLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPL-DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNR 118 (902)
Q Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~p-d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 118 (902)
+.++-.++.+...|.+.|++++|...|++... +.| +...|+.+...|.+.|++++|+..|++..+.... +.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 44666778889999999999999999999987 334 5788999999999999999999999999875322 57
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTY 197 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty 197 (902)
..|..+ -.+|.+.|++++|.+.|++..+.+ +-+...|+.+..+|.+.|++++|++.|++..+. .| +...|
T Consensus 78 ~a~~nL------g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~ 148 (723)
T 4gyw_A 78 DAYSNM------GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAY 148 (723)
T ss_dssp HHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHH
T ss_pred HHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 788888 999999999999999999988765 556789999999999999999999999999886 44 56789
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcc
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
..+..++...|++++|.+.+++..
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHH
Confidence 999999999999999988877553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0036 Score=73.81 Aligned_cols=443 Identities=6% Similarity=-0.037 Sum_probs=234.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC---
Q psy767 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAND--- 174 (902)
Q Consensus 98 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~--- 174 (902)
...+....|++-+.... -|..+|..+ +..+.+.+.++.+..+|+.+... +|.+...|..-+..-.+.|.
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~y------i~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKL------LKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCC
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcch
Confidence 34555556666555443 488889999 99999999999999999999876 47778889999999889898
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCh----h----HHHHHHHhcccC-CC-c-cchhhHHHHHHHHHh-
Q psy767 175 MASAEGILTMMSQAG-LEPSAQTYTKLMCGYAKHGDM----D----SIKTKIPSLKPQ-SE-L-FLCFSFQLTNLLILV- 241 (902)
Q Consensus 175 ~~~A~~l~~~M~~~g-~~pd~~ty~~ll~a~~~~g~~----~----~a~~l~~~~~~~-~~-~-~~~~~~~~~~~~~~~- 241 (902)
.+.+..+|+...... ..|+...|..-+.-..+.++. + .+.++|+..... |. . .....+..++.+...
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 999999999998863 138888888877766665554 2 233555554321 22 1 122344444443321
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHhccCCCCCCHH
Q psy767 242 --------SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG-------------DMDSVRRLLAQSGSSLVNGDYL 300 (902)
Q Consensus 242 --------~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g-------------~~~~A~~lf~~m~~~~~~p~~~ 300 (902)
.++++.+..+|+.........-..+|.....---..+ +++.|...+.++..
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~-------- 270 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLN-------- 270 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHH--------
Confidence 2345667777777664221111233322111100000 01111111211100
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhhhhhccccc--c---hHHhcCCCC-C------HHHHHHHHHHHHHcC-------C
Q psy767 301 DIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEG--P---MMSQAGLEP-S------AQTYTKLMCGYAKHG-------D 361 (902)
Q Consensus 301 tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~---~m~~~g~~p-~------~~t~~~Li~~y~~~g-------~ 361 (902)
+ ...+... . .....++++ + ...|...+.---..+ .
T Consensus 271 -----------------------~---~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~ 324 (679)
T 4e6h_A 271 -----------------------I---TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH 324 (679)
T ss_dssp -----------------------H---TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred -----------------------H---HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 0 0000000 0 000000110 0 234444443322221 1
Q ss_pred HHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHH-HHHHHcccCCCCCCCHHHH----HHHHHHcCCHHHHHHHH
Q psy767 362 MDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYID-EIISKIQPGVGYSADAANH----IYHLINKGQIDAAYRIV 434 (902)
Q Consensus 362 ~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~-~l~~~m~~~~g~~pd~~t~----i~~l~~~g~~~~A~~~~ 434 (902)
.+.+..+|++ +...|..+. |...+.-+...|+.++|. ++|++... ..|....+ +...-..|+++.|.++|
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~---~~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ---CIPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2334455655 233333443 777888888889999997 99999876 55665543 23334889999999999
Q ss_pred HHHHhccC--------CCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHc-cCCCCC
Q psy767 435 NTLARSAN--------INGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARS-ANINGE 504 (902)
Q Consensus 435 ~~m~~~~~--------i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~-~~~~~~ 504 (902)
+.+..... -.|........+... .+.++. .+....+.|..+.|.++|...... +..
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~-----------~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~--- 467 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSK-----------LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV--- 467 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS---
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---
Confidence 99886420 001100000000000 000111 222244678999999999999876 222
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHhcccccccCcchhhHhhhhhccCcchHHHHHH
Q psy767 505 QLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNL-AVLIKAHVLKEDYTGAVETFEYCVNQFRATPWKGELLK 583 (902)
Q Consensus 505 ~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~-~~ll~a~~~~~~~~g~~~~~~~~~~~~~a~~~~~~ll~ 583 (902)
....|-.....-.+.+.+.+.|..+|+...+. .|+...| ...+.-. . ..|+.+. |.. +|+
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe-~---~~~~~~~---------AR~----lfe 528 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFL-I---YVNEESQ---------VKS----LFE 528 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHH-H---HHTCHHH---------HHH----HHH
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH-H---hCCCHHH---------HHH----HHH
Confidence 22334322222223343379999999996664 3443333 3333222 2 4455555 555 666
Q ss_pred HHHHhhHHHhhhhhhhcccccccchhhhHHHH-----HhhhHHHHHHHHHHHH
Q psy767 584 RFIQAEDAACLQRITDLSTSIHGEVNSLYDLM-----LSFLDAEVLRILQVAE 631 (902)
Q Consensus 584 ~m~~~g~~~~~~~~~~~~~~i~p~~~~~~~li-----~~~~~~~al~ll~~m~ 631 (902)
...... .+. .....+|... ..|..+.+.++.+++.
T Consensus 529 ral~~~------------~~~-~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 529 SSIDKI------------SDS-HLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHTTTS------------SST-THHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHhc------------CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555443 100 0122233322 3344888888988883
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-05 Score=83.51 Aligned_cols=200 Identities=15% Similarity=0.017 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh----CC
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQ----GIEPN-RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD----KT 154 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd-~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~----~~ 154 (902)
..|+.....|...|++++|...|.+.... |-.++ ..+|+.+ ..+|.+.|++++|...|+.... .|
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l------g~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA------YKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 45777788889999999999999887543 32222 4567777 8999999999999999887653 22
Q ss_pred CCC-CHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc
Q psy767 155 FPI-SEGVFNALIYGHSQA-NDMASAEGILTMMSQAGLE-PS----AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF 227 (902)
Q Consensus 155 ~~p-~~~~yn~Li~~~~~~-g~~~~A~~l~~~M~~~g~~-pd----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~ 227 (902)
-.. -..+|+.+...|... |++++|+..|++..+.... .+ ..+|..+...+.+.|++++|...|+.........
T Consensus 112 ~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 111 135788899999996 9999999999988654110 01 3468888999999999999999999887754433
Q ss_pred chh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--HcCCHHHHHHHHHHhc
Q psy767 228 LCF------SFQLTNLLILVSSDMASAEGILTMMSQAGLEPSA------QTYTKLMCGYA--KHGDMDSVRRLLAQSG 291 (902)
Q Consensus 228 ~~~------~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~ty~~LI~a~~--~~g~~~~A~~lf~~m~ 291 (902)
... .+..+..++...|+++.|...|++.... .|+. ..+..++.+|. ..+++++|+..|+++.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 221 3455556677789999999999988753 3332 23445566664 4567888998887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.22 E-value=9.4e-05 Score=77.81 Aligned_cols=239 Identities=12% Similarity=0.004 Sum_probs=157.8
Q ss_pred hhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchH
Q psy767 22 SEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFS 101 (902)
Q Consensus 22 s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~ 101 (902)
.|.|..+.............. .-.+..++|...|+..... .-.|.......+... ...+
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~--~~~~~~Rs~iAlg~~~~~~--------------~~~~~~~a~~~la~~-~~~~---- 84 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNT--LLFYKAKTLLALGQYQSQD--------------PTSKLGKVLDLYVQF-LDTK---- 84 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHH--HHHHHHHHHHHTTCCCCCC--------------SSSTTHHHHHHHHHH-HTTT----
T ss_pred hhHHHHHHHHHHhcCccchHH--HHHHHHHHHHHcCCCccCC--------------CCCHHHHHHHHHHHH-hccc----
Confidence 366777766444333322222 2234456666666655321 112444343333333 3322
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhCCCHHHHHH
Q psy767 102 PTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTF-PISEGVFNALIYGHSQANDMASAEG 180 (902)
Q Consensus 102 A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~yn~Li~~~~~~g~~~~A~~ 180 (902)
|+..|++....+ .++..++..+ ..++...|++++|++++......+- .-+...+-.++..+.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~l------a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLL------ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHH------HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 778888877655 5566666677 8889999999999999998766552 2366788899999999999999999
Q ss_pred HHHHHHHCCCCC-----CHHHHHHHHHHHHH--cC--ChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q psy767 181 ILTMMSQAGLEP-----SAQTYTKLMCGYAK--HG--DMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGI 251 (902)
Q Consensus 181 l~~~M~~~g~~p-----d~~ty~~ll~a~~~--~g--~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l 251 (902)
.++.|.+. .| +..+...|..++.. .| +..+|..+|+++....+. ......+...+...|++++|+..
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--cccHHHHHHHHHHcCCHHHHHHH
Confidence 99999886 56 35666777766433 34 899999999998665432 22223333367778999999999
Q ss_pred HHHHHHC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 252 LTMMSQA-----G----LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 252 ~~~m~~~-----g----~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
++.+.+. . -+.|..+...+|..+...|+ +|.+++.++....
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 9876642 1 13456667566666666776 8888888876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=8.9e-05 Score=74.08 Aligned_cols=172 Identities=12% Similarity=0.066 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHhHHHHHHHHHcCCHHHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN-RVTYQQ----------------LISNSKLISKYCQDGNIEGATK 145 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~----------------ll~~~~li~~~~~~g~~~~A~~ 145 (902)
+..+-.....+...|++++|...|++..+. .|+ ...|.. + ..+|.+.|++++|..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~l------g~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATEL------ALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHH------HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHH------HHHHHHCCCHHHHHH
Confidence 334445556678899999999999998865 343 334444 5 888899999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh--hHHHHHHHhcccC
Q psy767 146 ILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM--DSIKTKIPSLKPQ 223 (902)
Q Consensus 146 l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~--~~a~~l~~~~~~~ 223 (902)
.|+...+.+ |-+...|..+...|...|++++|+..|++..+.. +-+..+|..+..+|...|.. ..+...+.....
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~- 152 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS- 152 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 999988765 5577889999999999999999999999998864 22566788887777665543 334445544432
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q psy767 224 SELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYT 268 (902)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 268 (902)
..+....+......+...|++++|...|++..+. .|+.....
T Consensus 153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 1121122222233334466777777777766654 45544333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=81.28 Aligned_cols=172 Identities=8% Similarity=-0.087 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhc
Q psy767 261 EPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQA 340 (902)
Q Consensus 261 ~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~ 340 (902)
+.+...+-.+...+.+.|++++|...|+++... .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------------------------------------~ 45 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----------------------------------------------G 45 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----------------------------------------------C
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------------------------------------C
Confidence 445677777888999999999999999984332 1
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCccc----HHHHHHHHHH--------cCChHHHHHHHHHccc
Q psy767 341 GLEPS-AQTYTKLMCGYAKHGDMDSIRRLLAQN-GSSLVNGD----YLDIIHALAV--------SGHGEYIDEIISKIQP 406 (902)
Q Consensus 341 g~~p~-~~t~~~Li~~y~~~g~~~~A~~~~~~m-~~~~~~~~----~~~li~~~~~--------~g~~~~A~~l~~~m~~ 406 (902)
.-.|. ...+..+..+|.+.|++++|...|++. ...|..+. +..+..++.. .|++++|.+.|++...
T Consensus 46 p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 46 RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 11111 567788889999999999999999983 33333332 5567778888 9999999999999987
Q ss_pred CCCCCCCHH------------------HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCcc
Q psy767 407 GVGYSADAA------------------NHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGY 468 (902)
Q Consensus 407 ~~g~~pd~~------------------t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~ 468 (902)
...-.+... .+-..+...|++++|...|+.+.+.+.-.+..+.
T Consensus 126 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~------------------- 186 (261)
T 3qky_A 126 RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADD------------------- 186 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH-------------------
T ss_pred HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHH-------------------
Confidence 222222222 2234456899999999999999886433222110
Q ss_pred ccchHHHHHHHHhc----------CChHHHHHHHHHHHHcc
Q psy767 469 SADAANHIYHLINK----------GQIDAAYRIVNTLARSA 499 (902)
Q Consensus 469 ~~~~~~li~~~~k~----------g~~~~A~~l~~~m~~~~ 499 (902)
..+.+...|.+. |++++|...|+.+....
T Consensus 187 --a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 187 --ALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp --HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 133455556655 88999999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00036 Score=69.86 Aligned_cols=177 Identities=14% Similarity=0.041 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC----CH
Q psy767 100 FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN----DM 175 (902)
Q Consensus 100 ~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g----~~ 175 (902)
.+|++.|++..+.| +...+..+ -..|...+++++|...|+...+.| +...+..|-..|.. + +.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~l------g~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYL------ADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCH
T ss_pred chHHHHHHHHHHCC---CHHHHHHH------HHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCH
Confidence 35788888888775 67777778 888889999999999999998887 45778888888887 6 89
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHhcccCCCc-cchhhHHHHHHHHHh----cCCHH
Q psy767 176 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIKTKIPSLKPQSEL-FLCFSFQLTNLLILV----SSDMA 246 (902)
Q Consensus 176 ~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~----~g~~~~a~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----~g~~~ 246 (902)
++|+.+|+...+.| +...+..|-..|.. .+++++|...|+.....+.. .....+..+..++.. .++.+
T Consensus 70 ~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 70 PQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999998876 67778888888877 88999999999999887653 224556666666666 77999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHhccCC
Q psy767 247 SAEGILTMMSQAGLEPSAQTYTKLMCGYAKH-G-----DMDSVRRLLAQSGSSL 294 (902)
Q Consensus 247 ~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~-g-----~~~~A~~lf~~m~~~~ 294 (902)
.|...|++..+. ..+...+..|-..|... | +.++|..+|+.....|
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999886 23455677777777764 3 8999999999865544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00011 Score=77.51 Aligned_cols=131 Identities=12% Similarity=0.042 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHH
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLT 235 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~ 235 (902)
+.+...+..+...+.+.|++++|+..|++..+.. .-+...+..+...+...|++++|...++.+........ ......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR-YQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-HHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-HHHHHH
Confidence 4456777888888999999999999999998873 22567888899999999999999999999877544221 122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 236 ~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
...+...++.+.|...+++..... +.+...+..+...|...|++++|+..|.+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 222344555666677777666553 45566777777777777777777777776
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00025 Score=71.63 Aligned_cols=160 Identities=12% Similarity=0.019 Sum_probs=119.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCC-CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTF-PI-SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA----QTYTKLMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~-~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~ll~a~ 204 (902)
...+.+.|++++|...|+.+....- .| ....+..+..+|.+.|++++|+..|++..+.. |+. ..+..+..++
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHH
Confidence 6678899999999999999887431 11 23578888999999999999999999998863 332 2344444444
Q ss_pred HH------------------cCChhHHHHHHHhcccCCCccchhhH----------------HHHHHHHHhcCCHHHHHH
Q psy767 205 AK------------------HGDMDSIKTKIPSLKPQSELFLCFSF----------------QLTNLLILVSSDMASAEG 250 (902)
Q Consensus 205 ~~------------------~g~~~~a~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~~~~A~~ 250 (902)
.. .|+.++|...|+.+....+....... ..+...+...|+++.|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 43 57899999999999876543322110 233445667899999999
Q ss_pred HHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 251 ILTMMSQAGLEPS----AQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 251 l~~~m~~~g~~pd----~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
.|+.+.+. .|+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 169 ~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 169 RVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999876 343 2568889999999999999999999876654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00026 Score=71.57 Aligned_cols=62 Identities=8% Similarity=-0.034 Sum_probs=48.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q psy767 475 HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDEN 537 (902)
Q Consensus 475 li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g 537 (902)
+...|.+.|++++|...|+.+......++.....+..+...+.+.|+ .++|+..++.+...+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM-NAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhC
Confidence 44457889999999999999887643332223567788999999999 999999999888764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00027 Score=73.11 Aligned_cols=170 Identities=10% Similarity=-0.048 Sum_probs=129.7
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CC
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---EGVFNALIYGHSQANDMASAEGILTMMSQAGL-EP 192 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~p 192 (902)
+...+-.+ ...+.+.|++++|...|+.+.... +-+ ...+..+..+|.+.|++++|+..|+...+... .|
T Consensus 14 ~~~~~~~~------a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 14 SPQEAFER------AMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp SHHHHHHH------HHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 44555556 778889999999999999998764 333 67888899999999999999999999988632 12
Q ss_pred C-HHHHHHHHHHHHH--------cCChhHHHHHHHhcccCCCccchh--hH--------------HHHHHHHHhcCCHHH
Q psy767 193 S-AQTYTKLMCGYAK--------HGDMDSIKTKIPSLKPQSELFLCF--SF--------------QLTNLLILVSSDMAS 247 (902)
Q Consensus 193 d-~~ty~~ll~a~~~--------~g~~~~a~~l~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~g~~~~ 247 (902)
. ...+..+..++.. .|++++|...|+.+....+..... .. ..+..++...|+++.
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 2 4467777788888 999999999999987754332211 11 344566777999999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHhccC
Q psy767 248 AEGILTMMSQAGLE--PSAQTYTKLMCGYAKH----------GDMDSVRRLLAQSGSS 293 (902)
Q Consensus 248 A~~l~~~m~~~g~~--pd~~ty~~LI~a~~~~----------g~~~~A~~lf~~m~~~ 293 (902)
|...|+.+.+..-. .....+..+..+|... |++++|...|++....
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999875321 1345777888888866 8999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00017 Score=76.94 Aligned_cols=152 Identities=10% Similarity=0.020 Sum_probs=99.1
Q ss_pred cCCHHHHHHHHHHhhhC------CCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHH
Q psy767 137 DGNIEGATKILEFMRDK------TFPISE----GVFNALIYGHSQANDMASAEGILTMMSQA----GLEPS-AQTYTKLM 201 (902)
Q Consensus 137 ~g~~~~A~~l~~~m~~~------~~~p~~----~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~pd-~~ty~~ll 201 (902)
.|++++|.+++++..+. ++.++. ..|+.....|...|++++|...|.+..+. |-.+. ..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777654431 112332 35677778888899999999999877543 21111 34788888
Q ss_pred HHHHHcCChhHHHHHHHhcccC----CCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q psy767 202 CGYAKHGDMDSIKTKIPSLKPQ----SEL-FLCFSFQLTNLLILVSSDMASAEGILTMMSQA----GLEP-SAQTYTKLM 271 (902)
Q Consensus 202 ~a~~~~g~~~~a~~l~~~~~~~----~~~-~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~ty~~LI 271 (902)
..|...|++++|...|+..... +.. .....+..+..++.. |+++.|...|++.... |-.+ ...+|+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999999998888765432 111 112344455555666 8888888888776642 1111 145677777
Q ss_pred HHHHHcCCHHHHHHHHHH
Q psy767 272 CGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 272 ~a~~~~g~~~~A~~lf~~ 289 (902)
..|.+.|++++|+..|++
T Consensus 163 ~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 888888888888888876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00032 Score=69.77 Aligned_cols=133 Identities=10% Similarity=-0.054 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+...+...|++++|...|++. +.|+...|..+ ...|.+.|++++|...|+.....+ +.+...|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 74 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNI------GCMYTILKNMTEAEKAFTRSINRD-KHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 344566777788889999999988876 36677788888 888889999999999998887765 5567888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLE--------------P-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~--------------p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
..+..+|...|++++|+..|+...+.... | ....+..+..+|...|++++|...|+........
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88889999999999999999988875311 1 1257777888888888888888888887765543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=77.63 Aligned_cols=163 Identities=12% Similarity=-0.032 Sum_probs=130.5
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
+...+..+ ...+.+.|++++|...|+...... |-+...+..+...+.+.|++++|..+|+..... .|+...
T Consensus 116 ~~~~~~~~------a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~ 186 (287)
T 3qou_A 116 EEELXAQQ------AMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRY 186 (287)
T ss_dssp HHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHH
T ss_pred chhhHHHH------HHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHH
Confidence 44455566 788889999999999999988765 557788999999999999999999999998765 466553
Q ss_pred HHH-HHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q psy767 197 YTK-LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE-PSAQTYTKLMCGY 274 (902)
Q Consensus 197 y~~-ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~ty~~LI~a~ 274 (902)
... ....+...++.++|...++......+ .+...+..+..++...|++++|...|.++.+..-. .+...+..+...|
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 333 33346777888888888888776543 34456777788888999999999999999986421 1267899999999
Q ss_pred HHcCCHHHHHHHHHH
Q psy767 275 AKHGDMDSVRRLLAQ 289 (902)
Q Consensus 275 ~~~g~~~~A~~lf~~ 289 (902)
...|+.++|...|++
T Consensus 266 ~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 266 AALGTGDALASXYRR 280 (287)
T ss_dssp HHHCTTCHHHHHHHH
T ss_pred HHcCCCCcHHHHHHH
Confidence 999999999999986
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.6e-05 Score=71.85 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH-HHh
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL-ILV 241 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 241 (902)
..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++......+ +.........+ +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 334445555555555555555544331 11334555555555555555555555555544322 11111111000 001
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.+....|...++...+.. +-+...+..+...|...|++++|...|++
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111112344444444332 23455566666666666666666666655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00015 Score=84.67 Aligned_cols=154 Identities=13% Similarity=0.021 Sum_probs=102.0
Q ss_pred CCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHH
Q psy767 56 EPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYC 135 (902)
Q Consensus 56 ~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~ 135 (902)
.|++++|...|++... --+-+...|..+...|.+.|++++|.+.|++..+.. +-+...|..+ ...|.
T Consensus 2 ~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l------g~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARL------GRVRW 68 (568)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHH------HHHHH
T ss_pred CccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH------HHHHH
Confidence 3667778777777765 122346778888888888888888888888887643 2246667777 78888
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CChhH
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH---GDMDS 212 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~---g~~~~ 212 (902)
..|++++|.+.|+...+.+ +.+...|..+..+|.+.|++++|.+.|++..+.. .-+...+..+...+... |+.++
T Consensus 69 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHH
Confidence 8888888888888877654 4566788888888888888888888888887763 22566777788888888 77777
Q ss_pred HHHHHHhcccCC
Q psy767 213 IKTKIPSLKPQS 224 (902)
Q Consensus 213 a~~l~~~~~~~~ 224 (902)
|.+.+++....+
T Consensus 147 A~~~~~~al~~~ 158 (568)
T 2vsy_A 147 LSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 777777665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00032 Score=62.32 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+...+...|++++|..+|+++.+.. +.+..++..+ ...+.+.|++++|..+|+.+...+ +.+..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNL------GNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 5678888888999999999999999988653 2356677777 888899999999999999887764 5567888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
..+...|...|++++|...|+++.+.. ..+...+..+...+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 889999999999999999999888763 2244455555444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=83.87 Aligned_cols=152 Identities=10% Similarity=-0.031 Sum_probs=96.9
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH
Q psy767 96 NEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM 175 (902)
Q Consensus 96 ~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~ 175 (902)
.|++++|...|++..+.. +-+...|..+ ...|.+.|++++|.+.|++..+.+ +-+...|..+...|...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLML------ADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------CCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 367888888888877542 1246667777 888888899999999998887765 55677888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q psy767 176 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMM 255 (902)
Q Consensus 176 ~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m 255 (902)
++|.+.|++..+.. .-+...|..+..+|...|++++|.+.++......
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------------------- 121 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL------------------------------- 121 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------
Confidence 99999998888763 2246677778888888888887777666554422
Q ss_pred HHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHhcc
Q psy767 256 SQAGLEPSAQTYTKLMCGYAKH---GDMDSVRRLLAQSGS 292 (902)
Q Consensus 256 ~~~g~~pd~~ty~~LI~a~~~~---g~~~~A~~lf~~m~~ 292 (902)
+.+...+..+...|... |+.++|.+.|++...
T Consensus 122 -----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 122 -----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 33455666666666666 677777777766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.8e-05 Score=89.63 Aligned_cols=184 Identities=9% Similarity=-0.055 Sum_probs=140.7
Q ss_pred HHCCCchHHHHHHHHHH--------HCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 94 LDNEHTFSPTDFLAKLE--------SQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 94 ~~~g~~~~A~~l~~~M~--------~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
...|++++|++.|++.. +.. ..+...+..+ ...|.+.|++++|...|+...+.+ +-+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~------a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLME------VRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHH------HHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 67899999999999988 322 2345667777 888999999999999999988765 5577899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
-.+|.+.|++++|++.|++..+... -+...|..+..+|.+.|++++ ...|+...+.+.. +...+..+..++...|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999988742 256788899999999999999 9999888765433 334566677777888999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC--------HHHHHHHHHHh
Q psy767 246 ASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGD--------MDSVRRLLAQS 290 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd-~~ty~~LI~a~~~~g~--------~~~A~~lf~~m 290 (902)
++|...|++..+. .|+ ...|..+..+|...|+ +++|.+.+..+
T Consensus 551 ~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 551 VGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999988887765 344 5667777777766554 45555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.85 E-value=9e-05 Score=71.71 Aligned_cols=156 Identities=9% Similarity=-0.012 Sum_probs=118.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCG-YAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a-~~~~g~ 209 (902)
...+.+.|++++|...|+...+.+ |-+...|..+...+.+.|++++|+..|+..... .|+...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcc
Confidence 677889999999999999987654 456788999999999999999999999988765 3454433322211 223233
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSVRRLLA 288 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~LI~a~~~~g~~~~A~~lf~ 288 (902)
...+...++......+. +...+..+..++...|++++|...|+++.+..-.+ +...+..+...|...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 34567777777654332 34566777788888999999999999999875332 36689999999999999999999998
Q ss_pred Hh
Q psy767 289 QS 290 (902)
Q Consensus 289 ~m 290 (902)
+.
T Consensus 169 ~a 170 (176)
T 2r5s_A 169 RQ 170 (176)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00044 Score=68.92 Aligned_cols=155 Identities=8% Similarity=-0.064 Sum_probs=112.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH----------------HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNA----------------LIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~----------------Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
...+.+.|++++|...|+.....+ |-+...|.. +..+|.+.|++++|+..|++..+.. +-+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 456678999999999999987764 334556666 8899999999999999999998874 2267
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q psy767 195 QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS--DMASAEGILTMMSQAGLEPSA--QTYTKL 270 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~l~~~m~~~g~~pd~--~ty~~L 270 (902)
..|..+...+...|++++|...|+......+.. ...+..+..++...| ....+...+.... .|+. ..|..+
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~ 163 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRD 163 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHH
Confidence 789999999999999999999999998765443 334444444443333 3445555565554 3443 344445
Q ss_pred HHHHHHcCCHHHHHHHHHHhcc
Q psy767 271 MCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 271 I~a~~~~g~~~~A~~lf~~m~~ 292 (902)
-.++...|++++|...|++...
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 5667778999999999998543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00026 Score=84.55 Aligned_cols=151 Identities=11% Similarity=-0.075 Sum_probs=127.4
Q ss_pred HHcCCHHHHHHHHHHhh--------hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 135 CQDGNIEGATKILEFMR--------DKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~--------~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
...|++++|.+.++... +.. +.+...|..+..+|.+.|++++|++.|++..+.. .-+...|..+-.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 332 5566889999999999999999999999998864 2366789999999999
Q ss_pred cCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy767 207 HGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRL 286 (902)
Q Consensus 207 ~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~l 286 (902)
.|++++|...|++..+.... +...+..+..++...|++++ ...|++..+.. +.+...|..+-.+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998875433 34556677777888999999 99999988764 55678899999999999999999999
Q ss_pred HHHh
Q psy767 287 LAQS 290 (902)
Q Consensus 287 f~~m 290 (902)
|++.
T Consensus 557 ~~~a 560 (681)
T 2pzi_A 557 LDEV 560 (681)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 9874
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00025 Score=70.52 Aligned_cols=130 Identities=10% Similarity=-0.051 Sum_probs=109.4
Q ss_pred HHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHH
Q psy767 43 VLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQ 122 (902)
Q Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 122 (902)
...+..+...+...|++++|...|..... |+...|..+...|...|++++|...|++..+.. +.+...|.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 75 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD---------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 34445566777788999999999988865 688999999999999999999999999988754 33667788
Q ss_pred HHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy767 123 QLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS----------------EGVFNALIYGHSQANDMASAEGILTMMS 186 (902)
Q Consensus 123 ~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----------------~~~yn~Li~~~~~~g~~~~A~~l~~~M~ 186 (902)
.+ ..+|...|++++|...|+...+.. +.+ ...|..+..+|.+.|++++|...|+...
T Consensus 76 ~l------g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 76 QR------GMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HH------HHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH------HHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88 999999999999999999987753 222 2778899999999999999999999998
Q ss_pred HCC
Q psy767 187 QAG 189 (902)
Q Consensus 187 ~~g 189 (902)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0004 Score=73.97 Aligned_cols=188 Identities=12% Similarity=0.037 Sum_probs=132.5
Q ss_pred CCCchHHHHHHHHHHHC------CCCCCHH----HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----CCCC-CHH
Q psy767 96 NEHTFSPTDFLAKLESQ------GIEPNRV----TYQQLISNSKLISKYCQDGNIEGATKILEFMRDK----TFPI-SEG 160 (902)
Q Consensus 96 ~g~~~~A~~l~~~M~~~------g~~pd~~----t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~ 160 (902)
.|++++|.+++++..+. +..++.. .|... ...|...|++++|...|....+. +-++ -..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~ 77 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAK 77 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35566777777665431 1134422 34445 77788899999999999876432 2111 135
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc-----cch
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQA----GLEPS--AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL-----FLC 229 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~pd--~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~-----~~~ 229 (902)
+|+.+...|.+.|++++|+..|++..+. | .|. ..++..+...|.. |++++|...+++....... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 7889999999999999999999987543 2 122 3577788888888 9999999998877642111 123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 230 FSFQLTNLLILVSSDMASAEGILTMMSQA----GLEPS-AQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 230 ~~~~~~~~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
..+..+..++...|++++|...|++.... +..++ ...|..+...+...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45666777788899999999999988763 22222 2367777788888999999999999854
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00061 Score=61.00 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...+...|++++|...|++..... +.+...+..+ ...+...|++++|...++...... +.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNR------AAAYSKLGNYAGAVQDCERAICID-PAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHH------HHHHHHhhchHHHHHHHHHHHhcC-ccCHHH
Confidence 55678888889999999999999999988653 2356777777 888899999999999999887764 456788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
|..+...|.+.|++++|...|++..+.. ..+...+..+..++...|++
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999988764 22566777777777777664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00063 Score=64.19 Aligned_cols=129 Identities=6% Similarity=-0.070 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+...+...|++++|...|++..+.. +.+..++..+ ...+...|++++|...|+...... +.+...|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~------a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNR------SLAYLRTECYGYALGDATRAIELD-KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 4557778888888999999999998887653 2256677777 888888999999999998887764 5567788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCChhHHHHHHHhc
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT--KLMCGYAKHGDMDSIKTKIPSL 220 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~ 220 (902)
..+..++.+.|++++|...|++...... .+...+. .+...+...|++++|...+...
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 8888889999999999999998887632 2444443 3333466677777777766543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00049 Score=62.09 Aligned_cols=121 Identities=7% Similarity=-0.094 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q psy767 79 VPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 79 ~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 158 (902)
.+.+...|..+...+.+.|++++|...|++..+.. +.+...+..+ ...|...|++++|...|+...+.. +.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~a~~~~-~~~ 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNR------AACYTKLLEFQLALKDCEECIQLE-PTF 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHH------HHHHTTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH------HHHHHHhccHHHHHHHHHHHHHhC-CCc
Confidence 44567889999999999999999999999988653 2266777777 888899999999999999987764 456
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG 208 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g 208 (902)
...|..+..+|.+.|++++|.+.|++..+... -+...+..+...+...|
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 78899999999999999999999999887631 13345555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00078 Score=59.70 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=77.4
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
...|..+ ...+...|++++|.+.|+.+.... +.+...|..+...+.+.|++++|..+|+++.... ..+..++
T Consensus 9 ~~~~~~~------~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNL------GNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 4556666 888889999999999999887654 4567888889999999999999999999988764 3366778
Q ss_pred HHHHHHHHHcCChhHHHHHHHhccc
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
..+...|...|++++|...++.+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888888888888777776654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0052 Score=70.02 Aligned_cols=214 Identities=9% Similarity=0.055 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHh
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFV 325 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~ 325 (902)
+.+..+|+++.... +.+...|-..+.-+.+.|++++|..+|++.... |....+-..+......+..
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~---------- 261 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEAV---------- 261 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHH----------
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhHH----------
Confidence 45677888887753 566888988888889999999999999986655 3222222222222111111
Q ss_pred hhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHc
Q psy767 326 NICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSL-VNGDYLDIIHALAVSGHGEYIDEIISKI 404 (902)
Q Consensus 326 ~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 404 (902)
+..+...+.... .+.+. ....+ ....|...+..+.+.+..+.|.++|++.
T Consensus 262 -----------------------~~~l~~~~~~~~-~~~~~-----~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 262 -----------------------YGDLKRKYSMGE-AESAE-----KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp -----------------------HHHHHHHTC----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHhhc-cchhh-----hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 111111110000 00000 00000 0011555555555566677777777776
Q ss_pred ccCCCCCCCHHH-HHHH-HHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhc
Q psy767 405 QPGVGYSADAAN-HIYH-LINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINK 482 (902)
Q Consensus 405 ~~~~g~~pd~~t-~i~~-l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~ 482 (902)
...+..+..+. +... +...++++.|..+|+...+.++-.|. . ....+....+.
T Consensus 313 -~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~---~---------------------~~~yid~e~~~ 367 (493)
T 2uy1_A 313 -GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL---L---------------------KEEFFLFLLRI 367 (493)
T ss_dssp -TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH---H---------------------HHHHHHHHHHH
T ss_pred -hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH---H---------------------HHHHHHHHHHc
Confidence 31222111111 0111 11233577888888777765422111 0 11233445677
Q ss_pred CChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 483 GQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 483 g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
|+.+.|..+|+.... +...|...+..-...|. .+.+..+++++.+
T Consensus 368 ~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~-~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 368 GDEENARALFKRLEK-------TSRMWDSMIEYEFMVGS-MELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 899999999988731 45678888887788898 8889888888653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.002 Score=64.29 Aligned_cols=164 Identities=14% Similarity=0.041 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcC----CHHHHHHHHHHhhhCCCC
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG----NIEGATKILEFMRDKTFP 156 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~ 156 (902)
-+...+..+-..|...+++++|+..|++..+.| +...+..+ -..|.. + ++++|...|+...+.|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~l------g~~y~~-~g~~~~~~~A~~~~~~A~~~g-- 83 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALL------AQLKIR-NPQQADYPQARQLAEKAVEAG-- 83 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHH------HHHTTS-STTSCCHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHH------HHHHHc-CCCCCCHHHHHHHHHHHHHCC--
Confidence 367888889999999999999999999998876 56666666 666776 6 8999999999998877
Q ss_pred CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHhcccCCCcc
Q psy767 157 ISEGVFNALIYGHSQ----ANDMASAEGILTMMSQAGLE-PSAQTYTKLMCGYAK----HGDMDSIKTKIPSLKPQSELF 227 (902)
Q Consensus 157 p~~~~yn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~-pd~~ty~~ll~a~~~----~g~~~~a~~l~~~~~~~~~~~ 227 (902)
+...+..|-..|.. .+++++|+.+|++..+.|.. .+...+..|-..|.. .++.++|...|+.....+.
T Consensus 84 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-- 160 (212)
T 3rjv_A 84 -SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR-- 160 (212)
T ss_dssp -CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC--
T ss_pred -CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC--
Confidence 45788888888877 88999999999999887521 026788888888888 8899999999999877622
Q ss_pred chhhHHHHHHHHHh-cC-----CHHHHHHHHHHHHHCC
Q psy767 228 LCFSFQLTNLLILV-SS-----DMASAEGILTMMSQAG 259 (902)
Q Consensus 228 ~~~~~~~~~~~~~~-~g-----~~~~A~~l~~~m~~~g 259 (902)
+......+..++.. .| +.++|...|+...+.|
T Consensus 161 ~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 161 TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 22244445555543 34 8999999999988776
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0098 Score=62.80 Aligned_cols=223 Identities=7% Similarity=-0.071 Sum_probs=146.2
Q ss_pred HHCC-CchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHHHcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 94 LDNE-HTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYCQDG--NIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 94 ~~~g-~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
.+.| ..++|+.+++.+... .|+ ...|+.- -..+...| +++++++.++.+...+ |-+..+|+.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R------~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYR------FNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLII 113 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHH------HHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHH
Confidence 3444 446899999999865 444 4456666 66666777 9999999999998765 44557777655555
Q ss_pred ----HhC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 170 ----SQA---NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD--SIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 170 ----~~~---g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~--~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
... +++++++++++.+.+.. .-|..+|+.---.+.+.|.++ ++.+.++.+...+.. +...+..-..++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 555 78999999999999875 337788888777788888887 888887777764432 2223333333333
Q ss_pred hcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhccCCCCCCHHHHHHHHHHcCCcc
Q psy767 241 VSSD------MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVR-RLLAQSGSSLVNGDYLDIIHALAVSGHGE 313 (902)
Q Consensus 241 ~~g~------~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~-~lf~~m~~~~~~p~~~tl~~~l~~~~~~~ 313 (902)
..+. ++++.+.++.+.... +-|...|+-+-..+.+.|+..+++ ++..+...
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~--------------------- 249 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD--------------------- 249 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE---------------------
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh---------------------
Confidence 4444 666777766666554 556666776666666666643322 23332110
Q ss_pred cHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy767 314 YIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNG 373 (902)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~ 373 (902)
.. ..-..+...+..+.++|.+.|+.++|.++++.+.
T Consensus 250 -----------------------~~-~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 250 -----------------------LE-KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp -----------------------GG-GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------------cc-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 00 0113366777777888888888888888888754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0024 Score=67.31 Aligned_cols=160 Identities=9% Similarity=-0.080 Sum_probs=120.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC-CCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT-FPISE----GVFNALIYGHSQANDMASAEGILTMMSQAGLE-PS----AQTYTKL 200 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~-~~p~~----~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~-pd----~~ty~~l 200 (902)
+..+.+.|++++|..+++...... ..|+. ..|..+...+...|++++|+..|++....... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 677889999999999999987643 22332 13445667777788999999999999874322 23 3368999
Q ss_pred HHHHHHcCChhHHHHHHHhccc------CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHH
Q psy767 201 MCGYAKHGDMDSIKTKIPSLKP------QSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ----AGLEPS-AQTYTK 269 (902)
Q Consensus 201 l~a~~~~g~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~ty~~ 269 (902)
...|...|++++|...++.... .........+..+..++...|++++|...+++..+ .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999988873 12222334666677778889999999999987764 232333 678889
Q ss_pred HHHHHHHcCC-HHHHHHHHHHh
Q psy767 270 LMCGYAKHGD-MDSVRRLLAQS 290 (902)
Q Consensus 270 LI~a~~~~g~-~~~A~~lf~~m 290 (902)
+-..|.+.|+ +++|.+.|++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999995 69999998873
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.2e-05 Score=69.66 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=83.7
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPN-RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ 171 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~ 171 (902)
+...|++++|+..+...... .|+ ...+-.+ ...|.+.|++++|.+.|+...+.+ |-+..+|..+-.+|.+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~l------a~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYF------AKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYEL 77 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33456677777777766532 332 3334455 777888888888888888887765 5567888888888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHH-HHhcc
Q psy767 172 ANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKTK-IPSLK 221 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~l-~~~~~ 221 (902)
.|++++|+..|+...+. .| +..+|..+...|.+.|+++++.+. ++...
T Consensus 78 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 78 EENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88888888888888876 34 466788888888888887765443 34443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00097 Score=62.87 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=68.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|+++.|...|+...... +.+...|..+...+...|++++|+..|++..... ..+...|..+..++...|++
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccH
Confidence 777788899999999888877654 4467788888888888899999999888887763 23566777777777777877
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
++|...++....
T Consensus 98 ~~A~~~~~~a~~ 109 (166)
T 1a17_A 98 RAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.014 Score=61.31 Aligned_cols=172 Identities=6% Similarity=-0.097 Sum_probs=95.9
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCC---CCC--HH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTF---PIS--EG 160 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~p~--~~ 160 (902)
+...+..+...|++++|.+.+.+..+.... +......+.....+...+...|++++|...++....... .+. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555666777777777777766654322 111111110011114455566777777777766543211 111 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQA-GLEPS-----AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL 234 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~pd-----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~ 234 (902)
+|+.+...|...|++++|+..|++..+. ...|+ ..+|..+...|...|++++|...+++...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~------------ 224 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE------------ 224 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH------------
Confidence 6677777777777777777777766521 00112 14566666666777777766666554322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHH
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSV-RRLLAQ 289 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~LI~a~~~~g~~~~A-~~lf~~ 289 (902)
+. ...+.... ..+|..+-..|.+.|++++| ...|++
T Consensus 225 ----------------~~---~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 225 ----------------IS---CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp ----------------HH---HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ----------------HH---HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 11121222 56788888899999999999 666765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0018 Score=68.18 Aligned_cols=165 Identities=6% Similarity=-0.062 Sum_probs=120.1
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCC-CCCCHH----HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCC-CC-
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQG-IEPNRV----TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFP-IS- 158 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~----t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~- 158 (902)
+...+..+...|++++|..++++..+.. ..|+.. .+..+ ...+...|++++|...|+........ ++
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYV------AAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH------HHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHH------HHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 3344778899999999999999988643 222321 12223 66677788999999999998774322 22
Q ss_pred ---HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHhcccC----CC
Q psy767 159 ---EGVFNALIYGHSQANDMASAEGILTMMSQ----A-GLEPSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQ----SE 225 (902)
Q Consensus 159 ---~~~yn~Li~~~~~~g~~~~A~~l~~~M~~----~-g~~pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~----~~ 225 (902)
..+|+.+...|...|++++|+..|++..+ . +..+.. .+|..+...|.+.|++++|...++..... +.
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 23699999999999999999999999874 1 222222 37888999999999999999998877542 22
Q ss_pred -ccchhhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q psy767 226 -LFLCFSFQLTNLLILVSS-DMASAEGILTMMS 256 (902)
Q Consensus 226 -~~~~~~~~~~~~~~~~~g-~~~~A~~l~~~m~ 256 (902)
......+..+..++...| ..++|...+++..
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 223456677777777888 5699998887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00046 Score=67.79 Aligned_cols=155 Identities=10% Similarity=-0.018 Sum_probs=111.4
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA----GLEP-SAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~ll~a~~~~g~ 209 (902)
...|++++|.++++.+.. .......+++.+...|...|++++|...|++.... |..| ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 22235678899999999999999999999988662 2222 23577788889999999
Q ss_pred hhHHHHHHHhcccC----CCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcC
Q psy767 210 MDSIKTKIPSLKPQ----SEL--FLCFSFQLTNLLILVSSDMASAEGILTMMSQA----GLEP-SAQTYTKLMCGYAKHG 278 (902)
Q Consensus 210 ~~~a~~l~~~~~~~----~~~--~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~ty~~LI~a~~~~g 278 (902)
+++|...+.+.... +.. .....+..+..++...|++++|...+++.... +... -..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999988877553 211 23345566667777899999999999887642 2111 1334678888999999
Q ss_pred CHHHHHHHHHHh
Q psy767 279 DMDSVRRLLAQS 290 (902)
Q Consensus 279 ~~~~A~~lf~~m 290 (902)
++++|.+.|++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999874
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00042 Score=66.76 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=63.6
Q ss_pred ccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHH
Q psy767 53 WCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLIS 132 (902)
Q Consensus 53 ~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~ 132 (902)
+...|++++|...+..... --+.+...|..+...|...|++++|...|++..+... .+...+..+ ..
T Consensus 20 ~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l------a~ 86 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAAL------AT 86 (177)
T ss_dssp CC-----CCCCHHHHHHHH------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHH------HH
T ss_pred hhhccCHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHH------HH
Confidence 3445555555555555444 1122445566666666666666666666666554321 134444444 44
Q ss_pred H-HHHcCCH--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 133 K-YCQDGNI--EGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 133 ~-~~~~g~~--~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+ +...|++ ++|...|+.....+ +-+...|..+...|...|++++|...|++..+.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 4 4455665 66666666655543 334455555666666666666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0011 Score=60.12 Aligned_cols=101 Identities=8% Similarity=-0.048 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
..|...-..|.+.|++++|+..|++..+.. +.+...|..+ ..+|.+.|++++|...|+...+.+ +.+...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~------~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNR------AACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH------hhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 557778888889999999999998887653 2366777777 888888999999999998887765 55678888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
.+..+|...|++++|++.|+...+. .|+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CcCC
Confidence 8889999999999999999988876 4543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=8.6e-05 Score=69.87 Aligned_cols=140 Identities=9% Similarity=0.006 Sum_probs=93.9
Q ss_pred ccCCCCCCcCcccccCccccccCCCCCCC-CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHH
Q psy767 53 WCSEPSLGPGNLPCEDPFSVHTGELDVPL-DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLI 131 (902)
Q Consensus 53 ~~~~g~~~~A~~~f~~~~~~~~~~~g~~p-d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li 131 (902)
+...|+++.|...+..... ..| +...|-.+-..|.+.|++++|.+.|++..+... -+..+|..+ .
T Consensus 7 ~~~~~~~e~ai~~~~~a~~-------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l------g 72 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP-------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFL------G 72 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC-------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH------H
T ss_pred HHHcChHHHHHHHHHHhcc-------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH------H
Confidence 3444455555544444443 112 223455677778888888888888888876532 256777777 8
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGI-LTMMSQAGLEP-SAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l-~~~M~~~g~~p-d~~ty~~ll~a~~~~g~ 209 (902)
.+|.+.|++++|...|+...+.+ |-+...|..+...|.+.|+.++|.+. ++...+. .| +..+|......+...|+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888887764 44677888888888888888766654 4666664 34 45566666666655553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00036 Score=75.43 Aligned_cols=131 Identities=11% Similarity=-0.075 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC--------------HHHHHHHHHhHHHHHHHHHcCCHHHHHHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN--------------RVTYQQLISNSKLISKYCQDGNIEGATKIL 147 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--------------~~t~~~ll~~~~li~~~~~~g~~~~A~~l~ 147 (902)
+...|..+-..|.+.|++++|...|++..+...... ...|..+ ..+|.+.|++++|...|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl------a~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL------AMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH------HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH------HHHHHHcCCHHHHHHHH
Confidence 456788899999999999999999999887542221 4677777 88999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH-HHHHHhc
Q psy767 148 EFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSI-KTKIPSL 220 (902)
Q Consensus 148 ~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a-~~l~~~~ 220 (902)
+...+.+ +.+...|..+..+|...|++++|+..|++..+.. .-+...+..+..++...|+.+++ ...+..|
T Consensus 220 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 220 NKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988875 5678899999999999999999999999998863 22566888888888888888877 3444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0007 Score=63.63 Aligned_cols=104 Identities=8% Similarity=-0.061 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+-..+.+.|++++|...|++...... -+...|..+ -.+|...|++++|...|+.....+ |-+...
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~l------g~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGL------AAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH------HHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 345577777778888888888888888776532 256667777 778888888888888888877654 445677
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
|..+-.+|.+.|++++|+..|+...+. .|+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888888888888888888888775 45543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0032 Score=65.92 Aligned_cols=191 Identities=12% Similarity=-0.039 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.+...|..+...+.+.|++++|...|++..+... -+...|..+ ...|.+.|++++|...++...+.+ +-+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNR------ALCYLKMQQPEQALADCRRALELD-GQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHH------HHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhC-CCCHH
Confidence 3567788899999999999999999999887532 267778888 899999999999999999988765 55778
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGL----EPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTN 236 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~----~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 236 (902)
.|..+..+|...|++++|+..|+...+.+. ..+...+..+ ...+...+... -. .....+......+.
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~~---~~----~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNSI---EE----RRIHQESELHSYLT 144 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHHH---HH----TCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHHH---HH----HHHhhhHHHHHHHH
Confidence 899999999999999999999998876421 1111222222 22222222221 11 11122222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHHhcc
Q psy767 237 LLILVSSDMASAEGILTMMSQAGLEPSA-QTYTKLMCGYAKH-GDMDSVRRLLAQSGS 292 (902)
Q Consensus 237 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ty~~LI~a~~~~-g~~~~A~~lf~~m~~ 292 (902)
.++ .|+.+.|.+.++...+. .|+. .....+-..+.+. +.+++|.++|.+...
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHH--HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 222 57888888888777654 4554 3444444455555 668899999998755
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00076 Score=66.15 Aligned_cols=156 Identities=8% Similarity=-0.009 Sum_probs=109.9
Q ss_pred HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh----CCCC-CCHHHHHHHHHH
Q psy767 94 LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD----KTFP-ISEGVFNALIYG 168 (902)
Q Consensus 94 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~-p~~~~yn~Li~~ 168 (902)
...|++++|.+.++.+.. .......++..+ ...+...|++++|...+++... .+.+ ....+++.+-..
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFML------GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHH------HHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 467899999996655543 222345567777 8889999999999999988754 2222 234678888899
Q ss_pred HHhCCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHhcccC----CCc-cchhhHHHHHH
Q psy767 169 HSQANDMASAEGILTMMSQA----GLEP--SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ----SEL-FLCFSFQLTNL 237 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M~~~----g~~p--d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~----~~~-~~~~~~~~~~~ 237 (902)
|...|++++|...|++.... |-.| ....+..+...+...|++++|...+++.... +.. .....+..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999887653 2121 2346778888999999999999998887542 111 12233456666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q psy767 238 LILVSSDMASAEGILTMMS 256 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~ 256 (902)
++...|++++|...+++..
T Consensus 156 ~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 6777999999999888765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0013 Score=58.70 Aligned_cols=90 Identities=10% Similarity=-0.029 Sum_probs=66.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|+++.|...|+...... +.+...|..+...+...|++++|...|+...... ..+...+..+...+...|++
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCH
Confidence 777778888888888888876654 4466778888888888888888888888887753 22456777777777777777
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
++|...++....
T Consensus 97 ~~A~~~~~~~~~ 108 (131)
T 2vyi_A 97 VEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 776666665443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00062 Score=63.72 Aligned_cols=98 Identities=10% Similarity=-0.068 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+...+.+.|++++|...|+...... +.+...|..+ -.+|...|++++|...|+.....+ +.+...|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGL------GACRQAMGQYDLAIHSYSYGAVMD-IXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhcC-CCCchHH
Confidence 3445556666667777777777777666542 1245555555 666666777777777776665543 3345666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
..+..+|...|++++|...|+...+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666777777777777777666553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0034 Score=54.75 Aligned_cols=100 Identities=11% Similarity=-0.008 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...+...|++++|...|++..... +.+...+..+ ...+...|++++|...++.....+ +.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNR------SAAYAKKGDYQKAYEDGCKTVDLK-PDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHH------HHHHHhhccHHHHHHHHHHHHHhC-cccHHH
Confidence 45667778888888888888888888887653 2256666666 777888888888888888877654 445677
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g 189 (902)
|..+..++...|++++|.+.|++..+.+
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 8888888888888888888888887753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0022 Score=57.57 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+...+.+.|++++|...|++..+.. +.+...|..+ ..+|.+.|++++|...|+...+.+ +-+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~------a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNR------AAALAKLMSFPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 4567777788888888888988888887653 2256777777 888888888888888888887765 4567788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888888888888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00082 Score=66.15 Aligned_cols=159 Identities=6% Similarity=-0.132 Sum_probs=106.7
Q ss_pred HhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCC-CC-----------
Q psy767 50 NSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIE-PN----------- 117 (902)
Q Consensus 50 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd----------- 117 (902)
+......|+++.+...|+..... .......|..+...+...|++++|...|++..+.... |+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 44555667888888888766541 1113456788888899999999999999998874321 11
Q ss_pred ---HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q psy767 118 ---RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSA 194 (902)
Q Consensus 118 ---~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 194 (902)
...|..+ ..+|.+.|++++|...++...... +.+...|..+..+|...|++++|+..|+...+.. .-+.
T Consensus 85 ~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 156 (198)
T 2fbn_A 85 NIEISCNLNL------ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNL 156 (198)
T ss_dssp HHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcH
Confidence 2566666 888899999999999999988764 5677889999999999999999999999988763 2255
Q ss_pred HHHHHHHHHHHHcCChhHHH-HHHHhccc
Q psy767 195 QTYTKLMCGYAKHGDMDSIK-TKIPSLKP 222 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~~~~a~-~l~~~~~~ 222 (902)
..+..+..++...++..++. ..+..+..
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777777777777666655 44444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0014 Score=58.91 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=76.1
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
+...|..+ ...+.+.|++++|...|+...... +.+...|..+...|...|++++|+..|++..+.. ..+...
T Consensus 15 ~~~~~~~~------~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNK------GNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp HHHHHHHH------HHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 44556666 788888999999999998887664 4567888888888888999999999998888763 235667
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
+..+..++...|++++|.+.|+....
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77888888888888888777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0091 Score=62.69 Aligned_cols=25 Identities=0% Similarity=-0.144 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 265 QTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 265 ~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.+|+.+...|.+.|++++|+..|++
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 5888899999999999999999987
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0052 Score=64.33 Aligned_cols=96 Identities=11% Similarity=-0.070 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH
Q psy767 158 SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 158 ~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
+...+..+...+.+.|++++|+..|++..... .-+...|..+..+|.+.|++++|...++......
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD------------- 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 45677778888888888888888888887763 2256677778888888888887777776665532
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 238 LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
+.+...|..+..+|...|++++|...|++.
T Consensus 69 -----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 69 -----------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667777778888888888888888763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0013 Score=63.32 Aligned_cols=123 Identities=8% Similarity=-0.016 Sum_probs=95.8
Q ss_pred HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhC
Q psy767 94 LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG-HSQA 172 (902)
Q Consensus 94 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~-~~~~ 172 (902)
...|++++|...|+...+.. +.+...|..+ ...|...|++++|...|+.....+ +.+...|..+..+ |...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l------g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALL------GEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 34688999999999887654 2366778888 889999999999999999987764 4567788888888 7789
Q ss_pred CCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCC
Q psy767 173 NDM--ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSE 225 (902)
Q Consensus 173 g~~--~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~ 225 (902)
|++ ++|...|+...+.. .-+...+..+...|...|++++|...++.......
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 998 99999999998874 22567888888899999999999888887766443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0018 Score=57.96 Aligned_cols=113 Identities=7% Similarity=-0.032 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCC--
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FPIS-- 158 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~-- 158 (902)
...|..+...+...|++++|...|++..... +.+...+..+ ...|...|++++|...|+...... ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQ------AAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHH------HHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4578889999999999999999999988754 3366777777 889999999999999999886643 1222
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 159 --EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204 (902)
Q Consensus 159 --~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~ 204 (902)
..+|..+...|.+.|++++|.+.|+...+. .|+...+..+....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 678889999999999999999999999886 46666555544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.34 E-value=0.016 Score=65.87 Aligned_cols=340 Identities=6% Similarity=-0.067 Sum_probs=182.7
Q ss_pred CCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHHHHC-CCCC-CHHHHHHHHHhHHHHHH
Q psy767 57 PSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEH-TFSPTDFLAKLESQ-GIEP-NRVTYQQLISNSKLISK 133 (902)
Q Consensus 57 g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~-~~~A~~l~~~M~~~-g~~p-d~~t~~~ll~~~~li~~ 133 (902)
|+++.++.+|+.... ..|++..|...+....+.+. .+....+|+..... |..| +...|... +..
T Consensus 28 ~~~e~~~~iferal~-------~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y------i~f 94 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK-------KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY------IEE 94 (493)
T ss_dssp TCHHHHHHHHHHHST-------TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH------HHH
T ss_pred CCHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH------HHH
Confidence 678888888888887 44799999999998888763 45677888877653 5444 56667666 654
Q ss_pred HH----HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-------------hCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 134 YC----QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHS-------------QANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 134 ~~----~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~-------------~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
+. ..|+++.+.++|+........--...|......-. ..+.+..|..+|+++...--..+...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 35678899999999877321111122322221110 01123334444444432100012334
Q ss_pred HHHHHHHHHHcC--C-----hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q psy767 197 YTKLMCGYAKHG--D-----MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTK 269 (902)
Q Consensus 197 y~~ll~a~~~~g--~-----~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ 269 (902)
|...+.--...+ - .+.+..+++.+.... +.....+..++..+...|+.+.|..++++.... +.+...|.
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~- 250 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL- 250 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH-
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH-
Confidence 444333322211 1 223556677666532 223455666666677789999999999988887 44433333
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcc-C-----CCCC-C-----HHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchH
Q psy767 270 LMCGYAKHGDMDSVRRLLAQSGS-S-----LVNG-D-----YLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMM 337 (902)
Q Consensus 270 LI~a~~~~g~~~~A~~lf~~m~~-~-----~~~p-~-----~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 337 (902)
.|+...+.++..+-+.+... . +..+ . |..++...... +..+.+..++. ..
T Consensus 251 ---~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~---~~~~~AR~i~~------------~A 312 (493)
T 2uy1_A 251 ---YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK---RGLELFRKLFI------------EL 312 (493)
T ss_dssp ---HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH---HCHHHHHHHHH------------HH
T ss_pred ---HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc---CCHHHHHHHHH------------Hh
Confidence 23332222222111111100 0 0001 0 22222222222 23455555442 12
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCH
Q psy767 338 SQAGLEPSAQTYTKLMCGYAKHG-DMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADA 414 (902)
Q Consensus 338 ~~~g~~p~~~t~~~Li~~y~~~g-~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 414 (902)
... ..+..+|......-...+ +.+.|..+|+. +...|..+. |...+.-....|+.+.|..+|++... .
T Consensus 313 ~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~ 383 (493)
T 2uy1_A 313 GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------T 383 (493)
T ss_dssp TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------B
T ss_pred hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------H
Confidence 111 123445543333333333 69999999987 333344444 56677777888999999999999842 2
Q ss_pred HHHHHHH----HHcCCHHHHHHHHHHHHhc
Q psy767 415 ANHIYHL----INKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 415 ~t~i~~l----~~~g~~~~A~~~~~~m~~~ 440 (902)
..+...+ ...|+.+.+..++++....
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3332222 4679999999988887764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0028 Score=57.29 Aligned_cols=91 Identities=7% Similarity=0.016 Sum_probs=75.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
-..|.+.|++++|...|++..+.+ |.+...|..+..+|.+.|++++|+..|+...+.. ..+...|..+..+|...|++
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 778889999999999999887765 5677889999999999999999999999988764 23567888888889999999
Q ss_pred hHHHHHHHhcccC
Q psy767 211 DSIKTKIPSLKPQ 223 (902)
Q Consensus 211 ~~a~~l~~~~~~~ 223 (902)
++|.+.|+...+.
T Consensus 98 ~~A~~~~~~al~l 110 (126)
T 4gco_A 98 SKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888888776653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0055 Score=64.78 Aligned_cols=203 Identities=8% Similarity=-0.006 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHCC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHc---CCHHHHHHHHHHhhhCCCCCC
Q psy767 84 SHYNALLRVYLDNE--HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQD---GNIEGATKILEFMRDKTFPIS 158 (902)
Q Consensus 84 ~~yn~li~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~---g~~~~A~~l~~~m~~~~~~p~ 158 (902)
..||.--..+...| ++++++.+++.+.....+ +..+|+.- ...|-...... +++++++.+++.+.+.+ +-|
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R--~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkn 143 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYR--QLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKN 143 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHH--HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHH--HHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCC
Confidence 44666555566665 666666666666664322 22222221 11111111222 56666666666666554 445
Q ss_pred HHHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------hhHHHHHHHhcccCCCccchh
Q psy767 159 EGVFNALIYGHSQANDMA--SAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD------MDSIKTKIPSLKPQSELFLCF 230 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~--~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~------~~~a~~l~~~~~~~~~~~~~~ 230 (902)
-.+|+----.+.+.|.++ ++++.++.+.+.... |...|+.-...+...+. ++++.+.++......+ .+..
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~S 221 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPS 221 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHH
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCcc
Confidence 566666555556666655 666666666665432 55556554444444444 5555555555544322 2333
Q ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 231 SFQLTNLLILVSSD-MASAEGILTMMSQAG--LEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 231 ~~~~~~~~~~~~g~-~~~A~~l~~~m~~~g--~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
.+.-...++...|+ .+.+..+...+...+ -..+...+..+...|.+.|+.++|.++|+.+..
T Consensus 222 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44444444444444 233444444443322 144667777788888888888888888887754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=72.00 Aligned_cols=174 Identities=12% Similarity=-0.000 Sum_probs=110.8
Q ss_pred ccCCCCCCCccchHHhhcHHHHHHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCC----
Q psy767 7 NVSDTATPVGITTEVSEATAEVTTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLD---- 82 (902)
Q Consensus 7 ~~~~~~~~~g~~~~~s~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd---- 82 (902)
+.|.++.-++......++++.+.................+..+...+...|++++|...|.......-.... .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 80 (198)
T 2fbn_A 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-WDDQILL 80 (198)
T ss_dssp --------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-CCCHHHH
T ss_pred CCcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cchhhHH
Confidence 445566666667777788888887777776666666777777888889999999999999988861111000 011
Q ss_pred -------HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q psy767 83 -------ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTF 155 (902)
Q Consensus 83 -------~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 155 (902)
...|..+...|...|++++|+..++...+.. +.+...+..+ ..+|...|++++|...|+...+..
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l------g~~~~~~~~~~~A~~~~~~al~~~- 152 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKL------GVANMYFGFLEEAKENLYKAASLN- 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHH------HHHHHHcccHHHHHHHHHHHHHHC-
Confidence 2788889999999999999999999988753 2366777777 889999999999999999987764
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHCC
Q psy767 156 PISEGVFNALIYGHSQANDMASAE-GILTMMSQAG 189 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~-~l~~~M~~~g 189 (902)
+-+...+..+..++...++.+++. ..|..|...|
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778888888888887777776 5566555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0016 Score=61.22 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=81.6
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 198 (902)
..+..+ -..+.+.|++++|...|+.....+ |-+...|..+-.+|...|++++|+..|+....... -+...|.
T Consensus 37 ~~~~~l------g~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~ 108 (151)
T 3gyz_A 37 DDIYSY------AYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVF 108 (151)
T ss_dssp HHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHH
T ss_pred HHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHH
Confidence 345556 778889999999999999998876 66788999999999999999999999999988742 2567888
Q ss_pred HHHHHHHHcCChhHHHHHHHhcccC
Q psy767 199 KLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 199 ~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
.+-.+|...|++++|...|+.....
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999998888877654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0037 Score=56.74 Aligned_cols=100 Identities=9% Similarity=-0.119 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
.+...|..+...+...|++++|...|+...... +.+...|..+ ..++...|++++|...|+.....+ +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNR------ALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 456677777777778888888888887776543 2245666666 777777788888888777776654 44566
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
.|..+..+|...|++++|+..|++....
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777788888887777776553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0051 Score=56.40 Aligned_cols=100 Identities=5% Similarity=-0.146 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q psy767 80 PLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN----RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTF 155 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 155 (902)
+.+...|..+...+...|++++|...|++..+. .|+ ...|..+ ...|...|++++|...++......
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~------a~~~~~~~~~~~A~~~~~~~~~~~- 95 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNR------AACHLKLEDYDKAETEASKAIEKD- 95 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHH------HHHHHHHccHHHHHHHHHHHHhhC-
Confidence 347788999999999999999999999999864 566 5667777 888999999999999999987764
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 156 PISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 156 ~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+.+...|..+..+|...|++++|...|++..+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 446788889999999999999999999999876
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0016 Score=56.39 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC--CHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPI--SEGV 161 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~ 161 (902)
..|..+...+...|++++|...|++..+.. +.+...+..+ ...+...|++++|...|+...+.. +. +...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~------a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 78 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMK------GKALYNLERYEEAVDCYNYVINVI-EDEYNKDV 78 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHHhC-cccchHHH
Confidence 345555556666666666666666655432 1234455555 556666666666666666665543 23 4555
Q ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHC
Q psy767 162 FNALIYGHSQA-NDMASAEGILTMMSQA 188 (902)
Q Consensus 162 yn~Li~~~~~~-g~~~~A~~l~~~M~~~ 188 (902)
|..+...|.+. |++++|.+.|+.....
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 66666666666 6666666666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.068 Score=57.11 Aligned_cols=117 Identities=9% Similarity=0.040 Sum_probs=82.4
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcC-CHHHHHHHHHHhhhCCCCCCHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG-NIEGATKILEFMRDKTFPISEGVFNA 164 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~yn~ 164 (902)
++.+-....+.+..++|+++++.+...... +...|+.- -..+...| ++++++.+++.+...+ +-+..+|+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R------~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~h 128 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYR------FSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHH------HHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHH------HHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 333333344455667899999999976422 44556665 55566677 5999999999998876 567788888
Q ss_pred HHHHHHhC-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 165 LIYGHSQA-N-DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 165 Li~~~~~~-g-~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
--..+.+. + ++++++++++.+.+... -|..+|+.-.-.+.+.|.++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccc
Confidence 77777776 6 88999999999988753 37778876555555444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.002 Score=55.71 Aligned_cols=92 Identities=9% Similarity=-0.044 Sum_probs=76.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc-
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP--SAQTYTKLMCGYAKH- 207 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~ty~~ll~a~~~~- 207 (902)
...+.+.|++++|...|+...+.. +.+...|..+...+...|++++|+..|++..+.. .. +...+..+...+...
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHh
Confidence 777888999999999999887764 4567888889999999999999999999998863 22 467888888889999
Q ss_pred CChhHHHHHHHhcccCC
Q psy767 208 GDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~ 224 (902)
|++++|.+.+.......
T Consensus 91 ~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEH 107 (112)
T ss_dssp SCSHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 99999888888877644
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0031 Score=58.18 Aligned_cols=97 Identities=12% Similarity=-0.112 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
..+..+...+.+.|++++|...|++...... .+...|..+ ..+|.+.|++++|...|+.....+ +-+...|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 90 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGL------GACRQSLGLYEQALQSYSYGALMD-INEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHH
Confidence 4455556666677777777777777665432 245556556 666777777777777777766554 44556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
.+..+|...|++++|...|+...+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777777777766554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00093 Score=62.50 Aligned_cols=90 Identities=9% Similarity=-0.019 Sum_probs=75.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+.+.|++++|...|+.....+ +.+...|..+-.+|...|++++|+..|+...... .-+...|..+..+|...|++
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 778888999999999999887765 5677888889999999999999999999988764 22567788888899999999
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
++|...|+....
T Consensus 106 ~~A~~~~~~al~ 117 (148)
T 2vgx_A 106 AEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888877655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0071 Score=62.60 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcc-----cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCC
Q psy767 348 TYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNG-----DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSAD 413 (902)
Q Consensus 348 t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd 413 (902)
.+..+-.++...|++++|+..|++-...+..| .+.....++.+.|+.++|..+|+++.. ..|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a---~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT---THPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc
Confidence 44455566666666666666666543222211 134556666777777777777777766 4554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0086 Score=62.00 Aligned_cols=196 Identities=10% Similarity=-0.031 Sum_probs=129.8
Q ss_pred HHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHh-HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC------------
Q psy767 92 VYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN-SKLISKYCQDGNIEGATKILEFMRDKTFPIS------------ 158 (902)
Q Consensus 92 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~-~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~------------ 158 (902)
++ ..+++..|.+.|.+..+.... ....|.-++.+ -.=...+.+.++..++...+.. ..++.|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~--~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG--SVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH--TTTCCGGGGCCEEECCTTT
T ss_pred cc-cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH--HhcCChhhhhhhhccCCcc
Confidence 44 689999999999999876422 45556544100 0000111111222222222222 2222222
Q ss_pred ----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc-
Q psy767 159 ----------EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF- 227 (902)
Q Consensus 159 ----------~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~- 227 (902)
...+-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.........
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 1233456677888999999999999888753 655566666678999999999999998665543221
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS--AQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
....+..+..++...|++++|+..|++.......|. ...+...-.++.+.|+.++|..+|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123566677778889999999999999985543354 346777888999999999999999997654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0053 Score=53.50 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=74.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+...|++++|...|+...... +.+...|..+...+...|++++|...+++..+.. ..+...+..+..++...|++
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhH
Confidence 778888999999999999887754 4567888888899999999999999999888764 22567788888888888988
Q ss_pred hHHHHHHHhcccCC
Q psy767 211 DSIKTKIPSLKPQS 224 (902)
Q Consensus 211 ~~a~~l~~~~~~~~ 224 (902)
++|...++......
T Consensus 89 ~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 89 EEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 88888887776543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0038 Score=67.34 Aligned_cols=129 Identities=9% Similarity=0.005 Sum_probs=97.9
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---------------HHHHHHHHHHHHhCCCHHHHHHHH
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---------------EGVFNALIYGHSQANDMASAEGIL 182 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---------------~~~yn~Li~~~~~~g~~~~A~~l~ 182 (902)
...|..+ -..|.+.|++++|...|+...... +.+ ...|..+..+|.+.|++++|+..|
T Consensus 147 a~~~~~~------g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 147 STIVKER------GTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH------HHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456666 888999999999999999987754 222 478999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q psy767 183 TMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP 262 (902)
Q Consensus 183 ~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~p 262 (902)
+...+.. ..+...|..+..+|...|++++|...|+...... +.
T Consensus 220 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------------------------P~ 262 (336)
T 1p5q_A 220 NKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY------------------------------------PN 262 (336)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------SS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------------------------------------CC
Confidence 9998864 2366788888888888888887777776654422 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHH-HHHHHHh
Q psy767 263 SAQTYTKLMCGYAKHGDMDSV-RRLLAQS 290 (902)
Q Consensus 263 d~~ty~~LI~a~~~~g~~~~A-~~lf~~m 290 (902)
+...+..+...+.+.|+.++| ..+|..|
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777 3455554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0042 Score=58.81 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...|.+.|++++|+..|++..+... -+...|..+ ..+|.+.|++++|...|+...+.+ +-+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNR------AAAYSASGQHEKAAEDAELATVVD-PKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHH------HHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 456677777888888888888888888776532 256667777 777888888888888888877664 445677
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
|..+..+|.+.|++++|+..|++..+.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888888877665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.007 Score=54.82 Aligned_cols=99 Identities=7% Similarity=-0.054 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 116 PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 116 pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
.+...|..+ ...+...|++++|...|+.....+ +.+...|..+..+|...|++++|+..|+...+.. ..+..
T Consensus 7 ~~~~~~~~~------g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQ------GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHH------HHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 356667777 888889999999999999887765 5567888899999999999999999999988764 22567
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 196 TYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 196 ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
.|..+..+|...|++++|...|.....
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888899999988887776644
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0056 Score=54.79 Aligned_cols=90 Identities=9% Similarity=0.046 Sum_probs=74.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|+..|+...+.. .-+...|..+..++...|++
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCH
Confidence 777888999999999999887765 5577889999999999999999999999988764 22566888888888899999
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
++|...|+....
T Consensus 89 ~~A~~~~~~al~ 100 (126)
T 3upv_A 89 ASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0048 Score=56.88 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=75.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+.+.|++++|...|+.....+ +.+...|..+-.+|.+.|++++|+..|+...... .-+...|..+..+|...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 677788999999999999987765 5677888889999999999999999999998864 23556778888889999999
Q ss_pred hHHHHHHHhccc
Q psy767 211 DSIKTKIPSLKP 222 (902)
Q Consensus 211 ~~a~~l~~~~~~ 222 (902)
++|...|+....
T Consensus 103 ~~A~~~~~~al~ 114 (142)
T 2xcb_A 103 DGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888887654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0072 Score=54.54 Aligned_cols=107 Identities=8% Similarity=-0.031 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCC--
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FPIS-- 158 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~-- 158 (902)
...|..+-..+.+.|++++|+..|++..+... -+...|..+ -.+|.+.|++++|++.|+...+.+ ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nl------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNK------AAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhH------HHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 45688889999999999999999999887532 257778888 999999999999999999876432 1111
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q psy767 159 --EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYT 198 (902)
Q Consensus 159 --~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 198 (902)
..+|..+-.++...|++++|++.|++.... .||..+..
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 246777888899999999999999998775 56765543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.007 Score=57.20 Aligned_cols=99 Identities=7% Similarity=-0.038 Sum_probs=80.9
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
+...|..+ ...+.+.|++++|...|+...+.. +-+...|..+..+|.+.|++++|+..|+...+.. .-+...
T Consensus 10 ~a~~~~~~------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSE------GNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKA 81 (164)
T ss_dssp HHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 34456666 788889999999999999987765 4577889999999999999999999999998874 225778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
|..+..+|...|++++|...|+.....
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888889999999999888888877653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0043 Score=55.55 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=69.6
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+..+...+.+.|++++|...|++..+... -+...|..+ -.++...|++++|...|+...+.+ +-+...|..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSL------GLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44566677788888888888888776432 256666666 777778888888888888877654 4466777788
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC
Q psy767 166 IYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
..+|.+.|++++|+..|++..+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.018 Score=64.02 Aligned_cols=200 Identities=10% Similarity=-0.080 Sum_probs=104.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPIS----------------EGVFNALIYGHSQANDMASAEGILTMMSQA-GLEPS 193 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~----------------~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~pd 193 (902)
...+.+.|++++|.+.|....+..-... ..++..|...|...|++++|.+++..+... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455667778888777777765432111 012555666666666666666666555432 00111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQ----AGLEPS-AQTYT 268 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~ty~ 268 (902)
..+-..+ ...+..++...|+.+.|..++..... .+..+. ..++.
T Consensus 91 ~~~~~~~-------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 91 SKTVKVL-------------------------------KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHHHHHH-------------------------------HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred hHHHHHH-------------------------------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 1111000 01111111223455555555554432 233333 45778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCC-CHH
Q psy767 269 KLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEP-SAQ 347 (902)
Q Consensus 269 ~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p-~~~ 347 (902)
.+...|...|++++|..++.+.... ....+-.+ ...
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~-------------------------------------------~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLRE-------------------------------------------FKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-------------------------------------------HTTSSCSTHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHH-------------------------------------------HHhcccchhHHH
Confidence 8888999999999999998873211 11111122 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCccc-----HHHHHHHHHHcCChHHHHHHHHHc
Q psy767 348 TYTKLMCGYAKHGDMDSIRRLLAQN----GSSLVNGD-----YLDIIHALAVSGHGEYIDEIISKI 404 (902)
Q Consensus 348 t~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m 404 (902)
+|..++..|...|++++|..++++. ...+..+. +..+...+...|+++.|...|.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6777788888888888888877652 11111111 333444445555666665555444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0049 Score=54.89 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=66.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC----HHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGL--EPS----AQTYTKLMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~--~pd----~~ty~~ll~a~ 204 (902)
...+...|+++.|...|+...... +.+...|..+...|...|++++|...|++...... .++ ..+|..+..++
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 777888888888888888877654 45677788888888888888888888888766521 122 55666677777
Q ss_pred HHcCChhHHHHHHHhccc
Q psy767 205 AKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~~ 222 (902)
...|++++|...|+....
T Consensus 90 ~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 777777777666665544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.033 Score=61.75 Aligned_cols=170 Identities=8% Similarity=-0.082 Sum_probs=109.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHH
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKT-FPISE----GVFNALIYGHSQANDMASAEGILTMMSQ----AGLEPS-AQTY 197 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~----~~yn~Li~~~~~~g~~~~A~~l~~~M~~----~g~~pd-~~ty 197 (902)
..|...|...|++++|.+.+......- -.++. .+.+.+-..+...|+.+.|..++.+... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 457788999999999999998875421 11122 1233333444456889999999987753 333333 3466
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q psy767 198 TKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAK 276 (902)
Q Consensus 198 ~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~LI~a~~~ 276 (902)
..+...|...|++++|..++..... .....+-.+ ...+|..++..|..
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLR-------------------------------EFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-------------------------------HHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHH-------------------------------HHHhcccchhHHHHHHHHHHHHHH
Confidence 6777788888888877776665432 111111112 24578888899999
Q ss_pred cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCC--HHHHHHHHH
Q psy767 277 HGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPS--AQTYTKLMC 354 (902)
Q Consensus 277 ~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~--~~t~~~Li~ 354 (902)
.|++++|..++++.... ....+..+. ...+..+..
T Consensus 188 ~~~~~~A~~~~~~al~~-------------------------------------------~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTA-------------------------------------------ANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------------------------------HHHSCCCHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHH-------------------------------------------hhcCCCchHHHHHHHHHHHH
Confidence 99999999999873210 111121221 355677778
Q ss_pred HHHHcCCHHHHHHHHHH
Q psy767 355 GYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 355 ~y~~~g~~~~A~~~~~~ 371 (902)
.|...|++++|...|.+
T Consensus 225 ~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HTTSSSCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 88889999999887765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.02 Score=51.06 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=67.5
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---HHH
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIEPNR---VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---EGV 161 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~ 161 (902)
.+...+...|++++|...|+...+.... +. ..+..+ ..++.+.|++++|...|+...... +.+ ...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l------g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWL------GESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHH------HHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHH
Confidence 4556677788888888888888764321 22 345555 777788888888888888877653 223 566
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
+..+..++.+.|++++|...|+.....
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777778888888888888888888776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0073 Score=54.01 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+.+.|++++|...|+...+.. +-+...|..+-.++...|++++|+..|++..+... -+...+..+..++...|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 667788999999999999988765 55788899999999999999999999999988642 2566888888899999999
Q ss_pred hHHHHHHHhcccC
Q psy767 211 DSIKTKIPSLKPQ 223 (902)
Q Consensus 211 ~~a~~l~~~~~~~ 223 (902)
++|...++.....
T Consensus 102 ~~A~~~~~~al~~ 114 (121)
T 1hxi_A 102 NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9988888877653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.023 Score=51.88 Aligned_cols=61 Identities=15% Similarity=-0.017 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHhc
Q psy767 158 SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS----AQTYTKLMCGYAKHGDMDSIKTKIPSL 220 (902)
Q Consensus 158 ~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~ll~a~~~~g~~~~a~~l~~~~ 220 (902)
+...|..+...+...|++++|+..|++..+. .|+ ...|..+...|...|++++|...++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3455555666666666666666666666554 344 344555555555555555555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0057 Score=69.26 Aligned_cols=152 Identities=11% Similarity=-0.011 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHH-hHHH---HHHHHHcCCHHHHHHHHHHhhhC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy767 113 GIEPNRVTYQQLIS-NSKL---ISKYCQDGNIEGATKILEFMRDK-------TFPISEGVFNALIYGHSQANDMASAEGI 181 (902)
Q Consensus 113 g~~pd~~t~~~ll~-~~~l---i~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~~yn~Li~~~~~~g~~~~A~~l 181 (902)
+..|+..++..++. +..+ +..+-..|++++|+.++++..+. +.+-...+++.|...|...|++++|+.+
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34456665554422 1111 23455789999999998876431 1122346799999999999999999999
Q ss_pred HHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q psy767 182 LTMMSQA-----GL-EPSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTM 254 (902)
Q Consensus 182 ~~~M~~~-----g~-~pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~ 254 (902)
+++..+. |- .|+. .+++.|...|...|++++|..+++ +|+.++..
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~----------------------------~Al~i~~~ 425 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMIC----------------------------KAYAILLV 425 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHH----------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH----------------------------HHHHHHHH
Confidence 9887542 31 3443 478889999999999999988877 45555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 255 MSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 255 m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
..-...+....+.+.+-.++...+.+.+|..+|..+..
T Consensus 426 ~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 426 THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333344566666788888889999999988654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0053 Score=56.90 Aligned_cols=132 Identities=11% Similarity=-0.084 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCC-CCCH----HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGI-EPNR----VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK---- 153 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~----~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 153 (902)
..+|..+...|...|++++|...+++..+... .++. .++..+ ...+...|++++|...++.....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNL------GNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 35678888889999999999999988765311 1121 345555 88888999999999999886532
Q ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHhc
Q psy767 154 TFPI-SEGVFNALIYGHSQANDMASAEGILTMMSQA----GLEP-SAQTYTKLMCGYAKHGDMDSIKTKIPSL 220 (902)
Q Consensus 154 ~~~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~ 220 (902)
+-++ ....+..+...+...|++++|...+++.... +..+ ...++..+...+...|++++|.+.+++.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2111 1456778888889999999999999877543 1111 1235556666777777777777666543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0078 Score=54.31 Aligned_cols=90 Identities=10% Similarity=0.038 Sum_probs=63.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC----HHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGL--EPS----AQTYTKLMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~--~pd----~~ty~~ll~a~ 204 (902)
-..+.+.|++++|+..|+...+.+ |-+...|+.+-.+|.+.|++++|++.|+...+... .++ ..+|..+-.++
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 777888888888888888877764 55677888888888888888888888887765421 111 12455555666
Q ss_pred HHcCChhHHHHHHHhcc
Q psy767 205 AKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~~ 221 (902)
...|++++|.+.|+...
T Consensus 94 ~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66677776666665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0093 Score=55.21 Aligned_cols=130 Identities=12% Similarity=-0.044 Sum_probs=85.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTF---PI--SEGVFNALIYGHSQANDMASAEGILTMMSQAGL-EPS----AQTYTKL 200 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~---~p--~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ty~~l 200 (902)
...|...|++++|...++......- .+ -..++..+...|...|++++|...|++.....- .++ ...+..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 7788889999999999988654210 01 124678888889999999999999988754310 111 3456667
Q ss_pred HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCC
Q psy767 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE-PSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 201 l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~ty~~LI~a~~~~g~ 279 (902)
...+...|++++|...++.... +.. ..+.. ....++..+...|...|+
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~----------------------------~~~---~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLA----------------------------IAQ---ELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----------------------------HHH---HTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHH----------------------------HHH---HccchHhHHHHHHHHHHHHHHccC
Confidence 7777788888887777665432 111 11111 113456667777778888
Q ss_pred HHHHHHHHHHhc
Q psy767 280 MDSVRRLLAQSG 291 (902)
Q Consensus 280 ~~~A~~lf~~m~ 291 (902)
+++|.+.+++..
T Consensus 145 ~~~A~~~~~~a~ 156 (164)
T 3ro3_A 145 HDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0037 Score=55.37 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=66.1
Q ss_pred HCCCchHHHHHHHHHHHCCC-CC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 95 DNEHTFSPTDFLAKLESQGI-EP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~-~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
..|++++|+..|++..+.+. .| +...+..+ ...|.+.|++++|...|+...+.+ +-+...|..+..++.+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~l------g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGL------GSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNL 74 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHc
Confidence 35788899999999886541 12 34556666 888889999999999999987765 55678888899999999
Q ss_pred CCHHHHHHHHHHHHHC
Q psy767 173 NDMASAEGILTMMSQA 188 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~ 188 (902)
|++++|+..|++....
T Consensus 75 g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAE 90 (117)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988775
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.018 Score=64.82 Aligned_cols=130 Identities=11% Similarity=0.006 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCC--------------HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPN--------------RVTYQQLISNSKLISKYCQDGNIEGATKILE 148 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--------------~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~ 148 (902)
...|..+-..|.+.|++++|...|++..+...... ...|..+ ..+|.+.|++++|+..|+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl------a~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL------AMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH------HHHHHHhcCHHHHHHHHH
Confidence 45688889999999999999999999886422211 4667777 888999999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHH-HHHhcc
Q psy767 149 FMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKT-KIPSLK 221 (902)
Q Consensus 149 ~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~-l~~~~~ 221 (902)
...+.+ +.+...|..+-.+|...|++++|+..|++..+. .|+ ...+..+..++.+.++.+++.+ ++..|.
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988765 557788999999999999999999999999876 444 4577778888888888876653 444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.022 Score=53.54 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHhHHHHHHHHHcCCHHHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQ--------GI--------EP-NRVTYQQLISNSKLISKYCQDGNIEGAT 144 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~--------g~--------~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~ 144 (902)
....|......+.+.|++++|+..|.+.... .. .| +...|..+ ..+|.+.|++++|.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl------a~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM------SQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHH------HHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH------HHHHHhcCcHHHHH
Confidence 3566888889999999999999999987754 10 11 22456666 88888999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 145 KILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 145 ~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
..++.....+ +.+...|..+..+|...|++++|...|+..... .|+..
T Consensus 84 ~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 84 ETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 9999988765 567788999999999999999999999998876 46544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.05 Score=58.17 Aligned_cols=169 Identities=8% Similarity=-0.091 Sum_probs=117.8
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhcccCCC-CCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHC-C-CchHHH
Q psy767 27 EVTTVLGALGAFLVLLVLLFVYLNSKWCSEP-SLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDN-E-HTFSPT 103 (902)
Q Consensus 27 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~-g-~~~~A~ 103 (902)
+|....+.+....+.+.-+|++-...+...| .++++...++.+.. .-+-+...|+.--..+.+. + ++++++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~------~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV------QNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------TTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3444444443333334444555444444445 47788888888876 3344778899877777776 6 899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHH--------HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC-
Q psy767 104 DFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIE--------GATKILEFMRDKTFPISEGVFNALIYGHSQAND- 174 (902)
Q Consensus 104 ~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~--------~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~- 174 (902)
++++.+.+...+ |-..|+.- .-++.+.|.++ ++++.++.+.+.+ +-|...|+-.-..+.+.+.
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R------~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYL------HWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHH------HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHhCCC-CHHHHHHH------HHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 999999865433 66666655 44444444444 8999999998877 5688999998888888876
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 175 ------MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 175 ------~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
++++++.+.++..... -|...|+.+-..+.+.|..
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred ccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 7899999999988753 3778898877777777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.024 Score=50.49 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=69.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISE---GVFNALIYGHSQANDMASAEGILTMMSQAGLEPS----AQTYTKLMCG 203 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~ll~a 203 (902)
...+.+.|++++|...|+...... +.+. ..+..+..++.+.|++++|...|+...... |+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 566778899999999999887653 2233 477778888999999999999999988763 33 4567777788
Q ss_pred HHHcCChhHHHHHHHhcccC
Q psy767 204 YAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 204 ~~~~g~~~~a~~l~~~~~~~ 223 (902)
+...|++++|...|+.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888877776553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0065 Score=68.94 Aligned_cols=120 Identities=8% Similarity=-0.055 Sum_probs=89.2
Q ss_pred HHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q psy767 91 RVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHS 170 (902)
Q Consensus 91 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~ 170 (902)
..+.+.|++++|.+.|++..+.. +-+..+|..+ ..+|.+.|++++|.+.+++..+.+ +-+...|..+..+|.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNR------SLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556789999999999988753 2257778888 889999999999999999988875 556788999999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHh
Q psy767 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCG--YAKHGDMDSIKTKIPS 219 (902)
Q Consensus 171 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a--~~~~g~~~~a~~l~~~ 219 (902)
+.|++++|++.|++..+.... +...+..+..+ +.+.|++++|.+.+++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999998876321 23344444444 7788888888888773
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.029 Score=61.22 Aligned_cols=123 Identities=9% Similarity=0.024 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQ--------------GIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILE 148 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~--------------g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~ 148 (902)
..|..+...|.+.|++++|+..|++..+. ...| +...|..+ ..+|.+.|++++|...++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nl------a~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNI------GACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHH------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHH------HHHHHhccCHHHHHHHHH
Confidence 45778888899999999999999988751 0122 33456666 888889999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHH
Q psy767 149 FMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIKT 215 (902)
Q Consensus 149 ~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~ll~a~~~~g~~~~a~~ 215 (902)
...+.+ +-+...|..+..+|...|++++|++.|++..+. .| +...+..+...+...++.+++.+
T Consensus 298 ~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 298 EALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988765 456788888999999999999999999998876 34 55566667777776666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0064 Score=52.64 Aligned_cols=95 Identities=7% Similarity=0.018 Sum_probs=72.9
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS--- 193 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd--- 193 (902)
+...+..+ ...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..+. .|+
T Consensus 3 ~~~~~~~~------g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQ------GNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEH 73 (111)
T ss_dssp HHHHHHHH------HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTS
T ss_pred hHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccH
Confidence 34456666 888889999999999999987764 557788999999999999999999999999876 454
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHhc
Q psy767 194 ----AQTYTKLMCGYAKHGDMDSIKTKIPSL 220 (902)
Q Consensus 194 ----~~ty~~ll~a~~~~g~~~~a~~l~~~~ 220 (902)
...+..+..++...|+.+.+...++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 445666666777777766665544443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.022 Score=64.46 Aligned_cols=93 Identities=1% Similarity=-0.145 Sum_probs=70.6
Q ss_pred HHhCCCHHHHHHHHHHHHHC---CC---CCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 169 HSQANDMASAEGILTMMSQA---GL---EPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M~~~---g~---~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
+...|++++|+.++++..+. -+ .|+ ..+++.|..+|...|++++|..+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~----------------------- 375 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR----------------------- 375 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-----------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH-----------------------
Confidence 55789999999999877543 12 222 3478888999999999999888776
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
.|+.++....-...+-...+++.|-..|...|++++|..+|++
T Consensus 376 -----~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 376 -----RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp -----HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555555444344467799999999999999999999987
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0068 Score=68.78 Aligned_cols=121 Identities=10% Similarity=0.026 Sum_probs=79.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|++.|++..+.. .-+..+|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 334556788888888888877654 4457788888888888888888888888888763 22456777777777777777
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCG--YAKHGDMDSVRRLLA 288 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a--~~~~g~~~~A~~lf~ 288 (902)
++|.+.+++..+ .. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~-----------------------------------~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVK-----------------------------------VK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH-----------------------------------HS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHH-----------------------------------hC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777666665433 21 2223344444444 788899999999988
Q ss_pred H
Q psy767 289 Q 289 (902)
Q Consensus 289 ~ 289 (902)
+
T Consensus 135 ~ 135 (477)
T 1wao_1 135 H 135 (477)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.32 Score=51.58 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=84.6
Q ss_pred HHHHHHHHHHH---HHCCCch-HHHHHHHHHHHCCCCCCH-HHHHHHHHhHHHHHHHHHcC-------CHHHHHHHHHHh
Q psy767 83 ISHYNALLRVY---LDNEHTF-SPTDFLAKLESQGIEPNR-VTYQQLISNSKLISKYCQDG-------NIEGATKILEFM 150 (902)
Q Consensus 83 ~~~yn~li~~~---~~~g~~~-~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~li~~~~~~g-------~~~~A~~l~~~m 150 (902)
+..|..+...+ .+.|.+. +|+.+++.+... .|+. ..|+.- ..++....+.. .+++++.+++.+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~R---r~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCR---REVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHH---HHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHH---HHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 44555554443 4566666 799999999954 4543 335443 11133333221 267888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHhcc
Q psy767 151 RDKTFPISEGVFNALIYGHSQAN--DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD-MDSIKTKIPSLK 221 (902)
Q Consensus 151 ~~~~~~p~~~~yn~Li~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~-~~~a~~l~~~~~ 221 (902)
...+ |-+..+|+.---.+.+.| .+++++.+++.+.+.... |...|+.---.+...|. ++++.+.++.+.
T Consensus 101 L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 101 LRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 7765 557788888777777777 488999999999887533 77788776666666666 354444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.05 Score=61.24 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=76.9
Q ss_pred HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---------------HHHHHHHHHHHHhCCCHHHHHHHHH
Q psy767 119 VTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS---------------EGVFNALIYGHSQANDMASAEGILT 183 (902)
Q Consensus 119 ~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---------------~~~yn~Li~~~~~~g~~~~A~~l~~ 183 (902)
..|..+ -..|.+.|++++|...|+...+.. +.+ ...|+.+..+|.+.|++++|+..|+
T Consensus 269 ~~~~~~------G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 269 AIVKEK------GTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHH------HHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH------HHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345556 888899999999999999987643 222 5788889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 184 MMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 184 ~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
+..+.. ..+...|..+..+|...|++++|...|+.....
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 998864 235678888888888888888887777766553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.019 Score=50.59 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHH
Q psy767 172 ANDMASAEGILTMMSQAGLE-P-SAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAE 249 (902)
Q Consensus 172 ~g~~~~A~~l~~~M~~~g~~-p-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 249 (902)
.|++++|+..|++..+.+.. | +...|..+...|...|++++|...|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~------------------------------ 52 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLAN------------------------------ 52 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------------
Confidence 46666677777766664311 2 223455555556666666655555544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 250 GILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 250 ~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
..+.. +-+..+|..+..+|.+.|++++|+..|++.
T Consensus 53 -----al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 53 -----GVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp -----HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44332 345667777788888888888888888763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.052 Score=50.84 Aligned_cols=93 Identities=8% Similarity=-0.007 Sum_probs=75.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC-------CC----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDK-------TF----------PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPS 193 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~-------~~----------~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd 193 (902)
-..+.+.|++++|...|+..... +- +-+...|..+..+|.+.|++++|+..++...+.. ..+
T Consensus 18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~ 96 (162)
T 3rkv_A 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETN 96 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccc
Confidence 77888999999999999887654 11 2234678889999999999999999999998874 335
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 194 AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 194 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
...|..+..+|...|++++|...|.......
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7788899999999999999999888776643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.36 Score=51.21 Aligned_cols=219 Identities=9% Similarity=-0.021 Sum_probs=119.6
Q ss_pred HHcCCHH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 135 CQDGNIE-GATKILEFMRDKTFPISEGVFNALIYGHSQAND----------MASAEGILTMMSQAGLEPSAQTYTKLMCG 203 (902)
Q Consensus 135 ~~~g~~~-~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~----------~~~A~~l~~~M~~~g~~pd~~ty~~ll~a 203 (902)
.+.|.++ +|+.+++.+...+ |-+..+||.=-..+...|. +++++.+++.+..... -+..+|+.---.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445544 6777777777655 3444555543322222222 4566666666665432 245555554444
Q ss_pred HHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHH
Q psy767 204 YAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD-MDS 282 (902)
Q Consensus 204 ~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~-~~~ 282 (902)
+.+.++. .++++..+++.+.+.. +.|..+|+.---.+...|. +++
T Consensus 118 L~~l~~~---------------------------------~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 118 LSRLPEP---------------------------------NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHCSSC---------------------------------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhccCcc---------------------------------cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHH
Confidence 4444420 2345555555555543 6677777777777777777 577
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHc---
Q psy767 283 VRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKH--- 359 (902)
Q Consensus 283 A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~--- 359 (902)
+++.+.++....+. |...|+.....+.+.
T Consensus 164 el~~~~~~I~~~p~------------------------------------------------N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 164 ELAFTDSLITRNFS------------------------------------------------NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHHHHHHHHCSC------------------------------------------------CHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCC------------------------------------------------CHHHHHHHHHHHHHhhhc
Confidence 77777765432211 333333333333222
Q ss_pred -----------CCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHc-----------CChHHHHHHHHHcccCCCCCCCHH
Q psy767 360 -----------GDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVS-----------GHGEYIDEIISKIQPGVGYSADAA 415 (902)
Q Consensus 360 -----------g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~-----------g~~~~A~~l~~~m~~~~g~~pd~~ 415 (902)
+.++++++.+.+ +...|...+ |+-+-..+.+. +.++++++.++++.+ ..||..
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle---~~pd~~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE---LEPENK 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH---HCTTCH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh---hCcccc
Confidence 345667776665 444444444 55433333333 346788888998887 777764
Q ss_pred HHHHH-------HHHcCCHHHHHHHHHHHHhc
Q psy767 416 NHIYH-------LINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 416 t~i~~-------l~~~g~~~~A~~~~~~m~~~ 440 (902)
-.+.. +...|..+++...+.++.+.
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22111 11356777788888777764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.051 Score=59.20 Aligned_cols=91 Identities=10% Similarity=0.025 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDK---------------TFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~---------------~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
...+.+.|++++|...|+...+. --+-+...|+.+..+|.+.|++++|+..+++..+.. .-+..
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 308 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTK 308 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHH
Confidence 78888999999999999887651 112245678888888889999999999999888763 22566
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 196 TYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 196 ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
.|..+..+|...|++++|...|+...+
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777788888888888877777666544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.073 Score=49.73 Aligned_cols=98 Identities=5% Similarity=-0.146 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC------CH-----HHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP------NR-----VTYQQLISNSKLISKYCQDGNIEGATKILEFMRD 152 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p------d~-----~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~ 152 (902)
..+...-..+.+.|++++|+..|++..+..... +. ..|..+ -.++.+.|++++|+..++...+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~------g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGL------AEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHH------HHHHHHCCCHHHHHHHHHHHHH
Confidence 446667777888999999999999988643220 22 267777 8899999999999999998876
Q ss_pred C-----CCCC-CHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 153 K-----TFPI-SEGVF----NALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 153 ~-----~~~p-~~~~y----n~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
. .+.| +...| ...-.++...|++++|+..|+...+
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5 1134 44677 8888899999999999999988765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.014 Score=62.75 Aligned_cols=148 Identities=7% Similarity=-0.054 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+...+.+.|++++|...|++.... .|+...+ ...|+.+++...+. ...|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------------~~~~~~~~~~~~l~----------~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------------QLYGKYQDMALAVK----------NPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------------TCCHHHHHHHHHHH----------THHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------------hhcccHHHHHHHHH----------HHHH
Confidence 445777777888899999999999998754 3443311 11122222222110 1355
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH-HHh
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL-ILV 241 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 241 (902)
+.+..+|.+.|++++|+..|+...+.. .-+...|..+..+|...|++++|...|+......... ...+..+..+ ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHH
Confidence 556666666666666666666665542 1244556666666666666666666666655443221 1122222222 222
Q ss_pred cCCHHHHHHHHHHHHH
Q psy767 242 SSDMASAEGILTMMSQ 257 (902)
Q Consensus 242 ~g~~~~A~~l~~~m~~ 257 (902)
.+..+.+..+|..|..
T Consensus 312 ~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 312 KALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhC
Confidence 4455566666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.11 Score=48.53 Aligned_cols=99 Identities=7% Similarity=-0.084 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPS--------A-----QTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd--------~-----~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
..+...-..+.+.|++++|+..|+...+. .|+ . ..|..+-.++.+.|++++|+..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k------- 82 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK------- 82 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH-------
Confidence 34555666777788888888888887765 333 2 2777788888888888888776653
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHh
Q psy767 227 FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS-AQTY----TKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty----~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
|+++|+.-.+. .|+ ...| ...-.++...|++++|+..|++.
T Consensus 83 ---------------------AL~l~n~~~e~--~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 83 ---------------------ALHYFNRRGEL--NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp ---------------------HHHHHHHHCCT--TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------------HHHhhhccccC--CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444432 444 5577 88899999999999999999984
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.079 Score=46.19 Aligned_cols=81 Identities=20% Similarity=0.086 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy767 100 FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAE 179 (902)
Q Consensus 100 ~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~ 179 (902)
++|+..|++..+.. +.+...+..+ ...|...|++++|...|+.....+ +.+...|..+..+|...|++++|.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTL------GKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHH------HHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 35666676666543 2245566666 777777788888888777776654 445667777777777778888877
Q ss_pred HHHHHHHHC
Q psy767 180 GILTMMSQA 188 (902)
Q Consensus 180 ~l~~~M~~~ 188 (902)
..|+...+.
T Consensus 74 ~~~~~al~~ 82 (115)
T 2kat_A 74 QAWESGLAA 82 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.015 Score=62.61 Aligned_cols=115 Identities=7% Similarity=-0.129 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHH
Q psy767 42 LVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTY 121 (902)
Q Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 121 (902)
.+..+..+...+.+.|++++|...|..... +.|+...| ...++..++...+ . ...|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-------~~p~~~~~-------~~~~~~~~~~~~l---~-------~~~~ 233 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIA-------YMGDDFMF-------QLYGKYQDMALAV---K-------NPCH 233 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHH-------HSCHHHHH-------TCCHHHHHHHHHH---H-------THHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------Hhccchhh-------hhcccHHHHHHHH---H-------HHHH
Confidence 445566778889999999999999998776 33443311 1111122221111 0 0133
Q ss_pred HHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 122 QQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 122 ~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
..+ ..+|.+.|++++|...|+...+.+ +.+...|..+..+|...|++++|+..|+...+
T Consensus 234 ~nl------a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 234 LNI------AACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHH------HHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334 445555555555555555554432 23444555555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.017 Score=49.76 Aligned_cols=95 Identities=8% Similarity=-0.015 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPIS-- 158 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-- 158 (902)
++...|..+...+...|++++|...|++..+.. +.+...|..+ ..+|.+.|++++|...|+...... +.+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 73 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNK------AMALIKLGEYTQAIQMCQQGLRYT-STAEH 73 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHTSC-SSTTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhC-CCccH
Confidence 356778899999999999999999999988753 2367778778 889999999999999999988754 223
Q ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHH
Q psy767 159 ----EGVFNALIYGHSQANDMASAEGILT 183 (902)
Q Consensus 159 ----~~~yn~Li~~~~~~g~~~~A~~l~~ 183 (902)
...+..+..++...|+.+.|...|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4455556666666666655554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.13 Score=42.16 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q psy767 118 RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTY 197 (902)
Q Consensus 118 ~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 197 (902)
...+..+ ...+...|++++|...|+...... +.+...|..+...|.+.|++++|...|++..+.. .-+...+
T Consensus 9 ~~~~~~l------a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNL------GNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAK 80 (91)
T ss_dssp HHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHH------HHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3455556 777888899999999998887654 4467788888889999999999999999888763 2245566
Q ss_pred HHHHHHHHH
Q psy767 198 TKLMCGYAK 206 (902)
Q Consensus 198 ~~ll~a~~~ 206 (902)
..+-.++..
T Consensus 81 ~~l~~~~~~ 89 (91)
T 1na3_A 81 QNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.28 Score=44.57 Aligned_cols=110 Identities=9% Similarity=-0.118 Sum_probs=80.1
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----C
Q psy767 97 EHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ----A 172 (902)
Q Consensus 97 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~----~ 172 (902)
+++++|+..|++..+.| .|+.. + -..|...+.++.|.+.|+...+.| +...++.|-..|.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----l------g~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----L------SLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----H------HHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----H------HHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCC
Confidence 45678888888888777 33443 5 666777777888888888887776 45777777777877 7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHhcccC
Q psy767 173 NDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~----~g~~~~a~~l~~~~~~~ 223 (902)
++.++|+.+|+...+.| +...+..|-..|.. .++.++|...|+...+.
T Consensus 75 ~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 78888888888888775 56666777777776 67777777666665544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.13 Score=42.11 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|..+...+...|++++|...|++..+.. +.+..++..+ ...+.+.|++++|...|+...+.+ +-+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNL------GNAYYKQGDYDEAIEYYQKALELD-PNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhcC-CCCHHH
Confidence 35678888899999999999999999988754 2256677777 889999999999999999987764 445677
Q ss_pred HHHHHHHHHhC
Q psy767 162 FNALIYGHSQA 172 (902)
Q Consensus 162 yn~Li~~~~~~ 172 (902)
+..+-.++.+.
T Consensus 80 ~~~l~~~~~~~ 90 (91)
T 1na3_A 80 KQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77766666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.37 Score=58.13 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=92.7
Q ss_pred HHHHCCCchHHHH-HHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q psy767 92 VYLDNEHTFSPTD-FLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHS 170 (902)
Q Consensus 92 ~~~~~g~~~~A~~-l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~ 170 (902)
.....+++++|.+ ++.. + |+......+ +..+.+.|..+.|.++.+.-. .- .....
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~------~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l 663 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKI------ARFLEGQEYYEEALNISPDQD--------QK----FELAL 663 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHH------HHHHHHTTCHHHHHHHCCCHH--------HH----HHHHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHH------HHHHHhCCChHHheecCCCcc--------hh----eehhh
Confidence 3446788888877 5421 1 112223556 788888999999887663211 11 23345
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHH
Q psy767 171 QANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEG 250 (902)
Q Consensus 171 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 250 (902)
..|++++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.. +..+..++...|+.+...+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 678999998886543 3678999999999999999999888887654 3344444444555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 251 ILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 251 l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+-+.....| -++....+|.+.|++++|+++|.+
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444333 123333344445555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=1.3 Score=51.05 Aligned_cols=186 Identities=8% Similarity=-0.035 Sum_probs=120.5
Q ss_pred HHHHHHHHHH---HHHCCC-chHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCC----------HHHHHHHHH
Q psy767 83 ISHYNALLRV---YLDNEH-TFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN----------IEGATKILE 148 (902)
Q Consensus 83 ~~~yn~li~~---~~~~g~-~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~----------~~~A~~l~~ 148 (902)
+..|..++.. ..+.|. .++|++.++++...... +...|+.- -.++.+.|+ ++++++.++
T Consensus 25 ~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R------~~~l~~l~~~~~~~~~~~~~~~eL~~~~ 97 (567)
T 1dce_A 25 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCR------REVLQHLETEKSPEESAALVKAELGFLE 97 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHH------HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHH------HHHHHhcccccchhhhhhhHHHHHHHHH
Confidence 3445544433 334454 45789999999976422 44456655 444455555 899999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHhcccCCC
Q psy767 149 FMRDKTFPISEGVFNALIYGHSQAN--DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG-DMDSIKTKIPSLKPQSE 225 (902)
Q Consensus 149 ~m~~~~~~p~~~~yn~Li~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g-~~~~a~~l~~~~~~~~~ 225 (902)
.+.+.+ +-+..+|+.---.+.+.| +++++++.++.+.+.... |..+|+.---++.+.| .++++.+.++.+.+..+
T Consensus 98 ~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 98 SCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 998876 567788998888888999 779999999999998644 7889998888888888 78888888888877543
Q ss_pred ccchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 226 LFLCFSFQLTNLLILVS--------------SDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 226 ~~~~~~~~~~~~~~~~~--------------g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~ 279 (902)
. +...+.....++... +.++++.+.++...... +-|...|+-+-..+.+.+.
T Consensus 176 ~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 176 S-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp C-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred C-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 3 223333333332221 33455555555554432 3344455544444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.19 Score=43.64 Aligned_cols=79 Identities=14% Similarity=-0.037 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 142 ~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
.|...|+...+.+ +.+...|..+...|...|++++|+..|++..... ..+...|..+..+|...|++++|...|+...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777776654 5577889999999999999999999999988764 2356688888888999999998888877654
Q ss_pred c
Q psy767 222 P 222 (902)
Q Consensus 222 ~ 222 (902)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.27 Score=44.69 Aligned_cols=78 Identities=9% Similarity=-0.047 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhH
Q psy767 137 DGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDS 212 (902)
Q Consensus 137 ~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~----~g~~~~ 212 (902)
.+++++|.+.|+...+.| .|+.. |-..|...+.+++|++.|+...+.| +...+..|-..|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 356788888888888877 23332 6666666677888888888888775 56666666666666 566665
Q ss_pred HHHHHHhccc
Q psy767 213 IKTKIPSLKP 222 (902)
Q Consensus 213 a~~l~~~~~~ 222 (902)
|...|+...+
T Consensus 80 A~~~~~~Aa~ 89 (138)
T 1klx_A 80 AAQYYSKACG 89 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5555554433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.18 Score=42.72 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 117 NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
+...+..+ ...|.+.|++++|...|+...+.+ +-+...|..+-.+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYAL------AQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555 667777777777777777766654 33456677777777777777777777776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.24 Score=54.92 Aligned_cols=89 Identities=10% Similarity=-0.030 Sum_probs=60.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC---CCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCCH-HH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT---FPI----SEGVFNALIYGHSQANDMASAEGILTMMSQA-----G-LEPSA-QT 196 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~---~~p----~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd~-~t 196 (902)
+.-+.+.|++++|+.+++...+.. +.| ...+++.|..+|...|++++|+.++++.... | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445566788888888887765421 222 2456788888888888888888888776532 2 13333 36
Q ss_pred HHHHHHHHHHcCChhHHHHHHHh
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPS 219 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~ 219 (902)
++.|...|...|++++|..++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777888888888887777664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.25 Score=54.69 Aligned_cols=92 Identities=11% Similarity=-0.064 Sum_probs=66.4
Q ss_pred hCCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcC
Q psy767 171 QANDMASAEGILTMMSQA---GLEPS----AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSS 243 (902)
Q Consensus 171 ~~g~~~~A~~l~~~M~~~---g~~pd----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 243 (902)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~------------------------ 365 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK------------------------ 365 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH------------------------
Confidence 357888999988877542 12232 24788888888888999888887774
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 244 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 244 ~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
|+.+++...-...+-...+|+.|-..|...|++++|+.+|++.
T Consensus 366 ----aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 366 ----IIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp ----HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4445555543333334567999999999999999999999873
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.13 Score=47.99 Aligned_cols=102 Identities=9% Similarity=-0.087 Sum_probs=78.0
Q ss_pred HHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCC----------HHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 94 LDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN----------IEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 94 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
.+.+.+++|...++...+... -+...|..+ -.++...++ +++|...|++..+.+ |-+...|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~------G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRW------GGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHH------HHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 345668899999999887642 267777777 666666655 469999999988876 55678899
Q ss_pred HHHHHHHhCC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q psy767 164 ALIYGHSQAN-----------DMASAEGILTMMSQAGLEPSAQTYTKLMCGYA 205 (902)
Q Consensus 164 ~Li~~~~~~g-----------~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~ 205 (902)
.+-.+|...| ++++|++.|++..+. .|+...|...+...-
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 9999998774 899999999999986 788777766555433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=93.07 E-value=0.38 Score=40.68 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD 152 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~ 152 (902)
-+...|..+...|...|++++|...|++..+.... +...|..+ ..+|.+.|++++|...|+...+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHL------GKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHH------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH------HHHHHHcCCHHHHHHHHHHHHh
Confidence 46788999999999999999999999999876432 45677788 9999999999999999998654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.39 Score=53.24 Aligned_cols=97 Identities=7% Similarity=-0.079 Sum_probs=70.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAG---LEPS----AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLL 238 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g---~~pd----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (902)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.|..+|...|++++|..++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~------------------- 354 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR------------------- 354 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH-------------------
Confidence 455667889999999998887541 2232 34778888888889999988887764
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 239 ILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 239 ~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
++.++....-...+-...+++.|-..|...|++++|+.+|++.
T Consensus 355 ---------~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 355 ---------TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp ---------HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------HHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4445555443333334567899999999999999999999873
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=1.9 Score=49.52 Aligned_cols=117 Identities=9% Similarity=-0.018 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 140 IEGATKILEFMRDKTFPISEGVFNALIYGHSQAND----------MASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 140 ~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~----------~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~ 209 (902)
-++|++.++.+...+ +-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.---++.+.++
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456777777777655 4455667665555555555 77777777777766422 55566655555555551
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHG-DMDSVRRLLA 288 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g-~~~~A~~lf~ 288 (902)
. +++++...++.+.+.. +.|..+|+.--..+.+.| .++++++.+.
T Consensus 123 ~---------------------------------~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 123 P---------------------------------NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp C---------------------------------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred c---------------------------------cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 1 2345555555555543 567888888877888888 7888888887
Q ss_pred Hhcc
Q psy767 289 QSGS 292 (902)
Q Consensus 289 ~m~~ 292 (902)
++..
T Consensus 169 ~~I~ 172 (567)
T 1dce_A 169 SLIT 172 (567)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 7543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.43 Score=52.81 Aligned_cols=86 Identities=12% Similarity=-0.087 Sum_probs=66.1
Q ss_pred CCCchHHHHHHHHHHH---CCCCCC----HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh-------CCCCCCHHH
Q psy767 96 NEHTFSPTDFLAKLES---QGIEPN----RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD-------KTFPISEGV 161 (902)
Q Consensus 96 ~g~~~~A~~l~~~M~~---~g~~pd----~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~-------~~~~p~~~~ 161 (902)
.|++++|..++++..+ .-+.|+ ..+++.+ ..+|...|++++|+.++++... .+.+-...+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nL------a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQA------MGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHH------HHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 5789999999998765 223343 2455566 9999999999999999988643 122223467
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
||.|-..|...|++++|+.+|++..+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999998754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.28 E-value=3 Score=50.07 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=93.6
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
...++..+.+.|.+++|+++.+.-. .- .......|+++.|.++.+.+ .+...|..|
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~------------~~------f~~~l~~~~~~~A~~~~~~~------~~~~~W~~l 687 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQD------------QK------FELALKVGQLTLARDLLTDE------SAEMKWRAL 687 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHH------------HH------HHHHHHHTCHHHHHHHHTTC------CCHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCcc------------hh------eehhhhcCCHHHHHHHHHhh------CcHhHHHHH
Confidence 3778888888899888887763211 11 34456789999999987554 356899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCH
Q psy767 166 IYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDM 245 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 245 (902)
...+.+.|+++.|.+.|..+.. |..+...|...++.+...++-+.....+ .+.....++...|++
T Consensus 688 a~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~ 752 (814)
T 3mkq_A 688 GDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDI 752 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCH
Confidence 9999999999999999998753 3344555555666665544433333221 112222233334555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 246 ASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 246 ~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
++|. ..|.+.+++++|..+-+.
T Consensus 753 ~~a~----------------------~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 753 QGAK----------------------DLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHH----------------------HHHHHTTCHHHHHHHHHH
T ss_pred HHHH----------------------HHHHHcCChHHHHHHHHH
Confidence 5554 455566778888887765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.49 Score=39.46 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=49.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEG-VFNALIYGHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~yn~Li~~~~~~g~~~~A~~l~~~M~~~g 189 (902)
...+.+.|++++|...|+...+.+ +.+.. .|..+-.+|...|++++|++.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 566788999999999999988764 44667 88889999999999999999999998864
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.87 E-value=6.2 Score=37.20 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=28.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMM 185 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M 185 (902)
......+|+++.|.++.+.+ -+...|..|-....+.|+++-|.+.|...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45555566666666665543 23455666666666666666666655544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.33 Score=45.19 Aligned_cols=71 Identities=8% Similarity=-0.072 Sum_probs=56.8
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM----------ASAEGILTMMSQAGLEP-SAQTYTKLMCG 203 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~----------~~A~~l~~~M~~~g~~p-d~~ty~~ll~a 203 (902)
.+.+.+++|.+.++...+.+ |-+...|+.+-.++...+++ ++|+..|++..+.. | +..+|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 45567889999999888776 66888999888888887764 59999999998874 4 55688888888
Q ss_pred HHHcC
Q psy767 204 YAKHG 208 (902)
Q Consensus 204 ~~~~g 208 (902)
|...|
T Consensus 90 y~~lg 94 (158)
T 1zu2_A 90 YTSFA 94 (158)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88775
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.61 E-value=0.1 Score=55.01 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=25.5
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC-ccchhh
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP-DEMQYE 886 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 886 (902)
+||+.||.+|.+.+++++||||.++++..+ .++...
T Consensus 267 ~~L~~dP~~Rpt~~ell~hp~f~~~~~~~~~~~~~~~ 303 (311)
T 4agu_A 267 GCLHMDPTERLTCEQLLHHPYFENIREIEDLAKEHDK 303 (311)
T ss_dssp HHCCSSTTTSCCHHHHHTSGGGTTCC-----------
T ss_pred HHccCChhhcCCHHHHhcChHHHhccCHHHHHHhhcc
Confidence 899999999999999999999999998876 555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=89.42 E-value=1.2 Score=36.98 Aligned_cols=81 Identities=9% Similarity=0.040 Sum_probs=57.8
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~ 167 (902)
....+.+.|++++|...|++..+... .+.. .|..+ ..+|...|++++|...|+...+.+ +-+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~l------g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLM------GNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH---
Confidence 34567788999999999999987532 2456 77777 888999999999999999988764 333344421
Q ss_pred HHHhCCCHHHHHHHHHHH
Q psy767 168 GHSQANDMASAEGILTMM 185 (902)
Q Consensus 168 ~~~~~g~~~~A~~l~~~M 185 (902)
+.+.+|...|++.
T Consensus 75 -----~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 -----KMVMDILNFYNKD 87 (99)
T ss_dssp -----HHHHHHHHHHCCT
T ss_pred -----HHHHHHHHHHHHH
Confidence 4455555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=88.96 E-value=2.9 Score=44.62 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=43.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 228 LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
+...+..+...+...|+++.|...+++....+ |+...|..+-..+.-.|++++|.+.|.+...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44455555555555677777777777777764 6777776777777788888888888876544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.68 E-value=16 Score=34.35 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccH
Q psy767 236 NLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYI 315 (902)
Q Consensus 236 ~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~ 315 (902)
..+...+|+++.|.++.+++ .+...|..|-....+.|+++-|.+.|... .|+..+.-++...|+.+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~------~D~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ------HSFDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT------TCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh------CCHHHHHHHHHHhCCHHHH
Confidence 34455688999999988776 46889999999999999999999999984 3556666666666665555
Q ss_pred HHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy767 316 DEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQN 372 (902)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m 372 (902)
.....+. ...| -++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA---------------~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIA---------------QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHH---------------HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHH---------------HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4443321 1111 1344455566667777777776653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.09 E-value=2.7 Score=35.05 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhHHHHHHHHHcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q psy767 117 NRVTYQQLISNSKLISKYCQDGN---IEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 117 d~~t~~~ll~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g 189 (902)
|...+..+ ..++...++ .++|..+|++....+ +-+......+-..+.+.|++++|+..|+.+.+..
T Consensus 5 ~~~~~~~~------a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAK------ATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHH------HHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44455555 555544433 577777777777665 4556667777777777888888888888877763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.01 E-value=6.3 Score=32.68 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHCCC---chHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q psy767 80 PLDISHYNALLRVYLDNEH---TFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT 154 (902)
Q Consensus 80 ~pd~~~yn~li~~~~~~g~---~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 154 (902)
+.|...|..+..++...++ .++|..+|++..+. .| +......+ -..+.+.|++++|...|+.+.+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~l------g~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLI------ANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577778888888765544 78999999999875 34 45555556 788899999999999999998875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.29 E-value=5.5 Score=36.54 Aligned_cols=84 Identities=10% Similarity=0.068 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHH
Q psy767 140 IEGATKILEFMRDKTFPISEGVFNALIYGHSQAN---DMASAEGILTMMSQAGLEP--SAQTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 140 ~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g---~~~~A~~l~~~M~~~g~~p--d~~ty~~ll~a~~~~g~~~~a~ 214 (902)
+..+.+-|.+....| +++..+.-.+-.++++++ +.++++.+|++..+.+ .| ....+..|--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 455666677666666 467778777888888888 6679999999988864 24 2445566777889999999999
Q ss_pred HHHHhcccCCC
Q psy767 215 TKIPSLKPQSE 225 (902)
Q Consensus 215 ~l~~~~~~~~~ 225 (902)
+.++.+.+..+
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 88888776443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.90 E-value=7.3 Score=35.73 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhCCC
Q psy767 100 FSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDG---NIEGATKILEFMRDKTFPI--SEGVFNALIYGHSQAND 174 (902)
Q Consensus 100 ~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p--~~~~yn~Li~~~~~~g~ 174 (902)
..+.+-|.+....|. ++..+...+ ..++++.+ +++++..+|+...+.+ .| +...+-.|--+|.+.|+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~y------a~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEY------AWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHH------HHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHH------HHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 345566666666554 566666666 77788888 6779999999988765 34 23444456677899999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q psy767 175 MASAEGILTMMSQAGLEPSAQTYTKL 200 (902)
Q Consensus 175 ~~~A~~l~~~M~~~g~~pd~~ty~~l 200 (902)
+++|.+.++...+. .|+..--..+
T Consensus 87 Y~~A~~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 87 YEKALKYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 99999999999986 7765433333
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=0.64 Score=48.72 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCCCCCcchhhhH-----HHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSC-----DQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 876 (902)
+||+.||.+|.++ |++++||||.++.
T Consensus 259 ~~L~~dP~~R~ta~~~~~~eil~Hp~f~~id 289 (304)
T 3ubd_A 259 MLFKRNPANRLGAGPDGVEEIKRHSFFSTID 289 (304)
T ss_dssp HHTCSSGGGSTTCSTTTHHHHHTSGGGTTCC
T ss_pred HHcccCHHHCCCCCcCCHHHHHcCccccCCC
Confidence 6889999999984 8999999998873
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=84.26 E-value=0.51 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.7
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
+||+.||.+|.+++++++||||.
T Consensus 245 ~~L~~dP~~R~s~~eil~hpw~k 267 (275)
T 3hyh_A 245 RMLIVNPLNRISIHEIMQDDWFK 267 (275)
T ss_dssp HHSCSSGGGSCCHHHHHHCHHHH
T ss_pred HHccCChhHCcCHHHHHcCcccc
Confidence 78999999999999999999994
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=83.94 E-value=0.25 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=23.7
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
++|..||.+|.++++.++||||.++.
T Consensus 335 ~lL~~dP~~R~ta~eaL~Hp~f~~i~ 360 (361)
T 4f9c_A 335 KLLDLNPASRITAEEALLHPFFKDMS 360 (361)
T ss_dssp HHTCSCTTTSCCHHHHHTSGGGTTC-
T ss_pred HHCcCChhHCcCHHHHhcCcccCCCC
Confidence 78999999999999999999998763
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=83.34 E-value=0.96 Score=47.46 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=23.3
Q ss_pred CCCCCCcchhhhHHH------hhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQ------LLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 877 (902)
+||..||.+|.+++| +++||||.++-.
T Consensus 267 ~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw 299 (311)
T 4aw0_A 267 KLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 299 (311)
T ss_dssp HHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCC
T ss_pred HHccCCHhHCcChHHHcCCHHHHCCCCcCCCCH
Confidence 678999999999998 589999998754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=82.90 E-value=15 Score=32.72 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=88.3
Q ss_pred HHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCC--CHHHHHHHHHHcCCHHHHHHHH
Q psy767 357 AKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSA--DAANHIYHLINKGQIDAAYRIV 434 (902)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p--d~~t~i~~l~~~g~~~~A~~~~ 434 (902)
.-.|.+++..++..+.-.......||.+|--....-+-+-..++++.+-.-..+.+ +..+++..+.+.+...
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~s------ 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLN------ 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCC------
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchH------
Confidence 34577888888887754443444577777777777777777777777765444444 2223344333333211
Q ss_pred HHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHH
Q psy767 435 NTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLV 513 (902)
Q Consensus 435 ~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li 513 (902)
.... .+..+...|+-+.-.++...+..... .++...--+.
T Consensus 92 ------------------------------------e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~---~~~~~l~kia 132 (172)
T 1wy6_A 92 ------------------------------------EHVNKALDILVIQGKRDKLEEIGREILKNNE---VSASILVAIA 132 (172)
T ss_dssp ------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CC---SCHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhccHhHHHHHHHHHhccCC---CChHHHHHHH
Confidence 2233 45567788888888888887644322 1345566788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 514 RHMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 514 ~~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
.+|.+.|. ..+|.+++.+.-+.|++
T Consensus 133 ~Ay~Klg~-~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 133 NALRRVGD-ERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hhhHHHHHHHHHHhhhH
Confidence 89999998 89999999998888874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.37 E-value=63 Score=35.43 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHcccC-CCCCCCHHH------HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhH
Q psy767 382 LDIIHALAVSGHGEYIDEIISKIQPG-VGYSADAAN------HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFL 454 (902)
Q Consensus 382 ~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t------~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~ 454 (902)
..|...+-..|++.+|.+++..+... .|..+...- -+..|...+++..|..+++++.....-.+..+..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l---- 216 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL---- 216 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH----
Confidence 35777788889999998888887642 222222211 2556678899999999998876432211111111
Q ss_pred HHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCc---cchHHHHHHHHHHcCCCHHHHHHHH
Q psy767 455 VRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQ---LPVGGFLVRHMVKTNQPIDKVLAVC 530 (902)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~---~~~~n~li~~~~~~g~~~~~A~~l~ 530 (902)
....+. .+..+...+++.+|.+.|.++........+. ..+...++....-.+. ...--.++
T Consensus 217 --------------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~-~~~~~~ll 281 (445)
T 4b4t_P 217 --------------KLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPY-GNLQNDLI 281 (445)
T ss_dssp --------------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSC-SSTTHHHH
T ss_pred --------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCC-CchHHHHH
Confidence 001222 3344667889999888887776543211111 0111222222233332 12222333
Q ss_pred HHHHHCCCCCChhhHHHHHHHhcccccccCcchhhHhhhhhc
Q psy767 531 HRLTDENLHPRAFNLAVLIKAHVLKEDYTGAVETFEYCVNQF 572 (902)
Q Consensus 531 ~~m~~~g~~Pd~~t~~~ll~a~~~~~~~~g~~~~~~~~~~~~ 572 (902)
.........++...|..++.++ ..+.+..|....+.|
T Consensus 282 ~~~~~~~~~~~l~~~~~L~k~f-----~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 282 HKIQNDNNLKKLESQESLVKLF-----TTNELMRWPIVQKTY 318 (445)
T ss_dssp HSHHHHSSCHHHHHHHHHHHHH-----HHCCSSSHHHHHHHT
T ss_pred HHHhhcccccccHHHHHHHHHH-----HhchHhhhHHHHHHH
Confidence 3333333346677788888776 445554444444433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.36 E-value=3.8 Score=44.45 Aligned_cols=117 Identities=13% Similarity=0.149 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHH---HCCCchHHHHHHHHHHHC--C-CCCCH------HHHHHHHH------hHHHHHHHHHcCCHH
Q psy767 80 PLDISHYNALLRVYL---DNEHTFSPTDFLAKLESQ--G-IEPNR------VTYQQLIS------NSKLISKYCQDGNIE 141 (902)
Q Consensus 80 ~pd~~~yn~li~~~~---~~g~~~~A~~l~~~M~~~--g-~~pd~------~t~~~ll~------~~~li~~~~~~g~~~ 141 (902)
.-|+..|..++.... ..|+.+.|...+++.... | +-|+. ..+..-+. ...++..+...|+.+
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 346777777776543 468888999988887753 3 11211 11111111 244577778899999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q psy767 142 GATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ-----AGLEPSAQTY 197 (902)
Q Consensus 142 ~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~ty 197 (902)
+|...+..+.... |-+...|-.+|.+|.+.|+..+|++.|+...+ .|+.|+..+-
T Consensus 189 ~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 189 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 9999888887665 67888999999999999999999999988754 4999988763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=81.04 E-value=10 Score=31.95 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCC------CCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQG------IEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK 153 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g------~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~ 153 (902)
+..-+-.|...+.+.|++..|...|+...+.- -.+....+..+ ..+|.+.|+++.|...++.....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L------~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYL------SYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHH------HHHHHHccCHHHHHHHHHHHHhc
Confidence 55567788889999999999999998876531 12345566667 88888888888888888887764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=80.55 E-value=6.4 Score=41.95 Aligned_cols=65 Identities=8% Similarity=-0.115 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 157 ISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 157 p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|...++.....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344455554444444455555555555555543 45445545555555555555555555555443
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.50 E-value=0.7 Score=48.89 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=27.8
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||.+|.+.+++++||||.+..+...
T Consensus 264 ~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~ 293 (324)
T 3mtl_A 264 KLLQFEGRNRISAEDAMKHPFFLSLGERIH 293 (324)
T ss_dssp HHSCSSGGGSCCHHHHTTSGGGGGGCSTTS
T ss_pred HHcCcCcccCCCHHHHhcChhhhhcccccc
Confidence 899999999999999999999999887664
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=80.20 E-value=0.44 Score=49.90 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||+.||.+|.+++++++||||.++..
T Consensus 262 ~~L~~dP~~Rps~~eil~h~~~~~~~~ 288 (299)
T 4g31_A 262 DMLSPSPMERPEAINIIENAVFEDLDF 288 (299)
T ss_dssp HHTCSSGGGSCCHHHHHTSGGGCCC--
T ss_pred HHcCCChhHCcCHHHHhcCHhhCCCCC
Confidence 689999999999999999999988744
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 902 | ||||
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 1e-05 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 1e-05 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 2e-05 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 3e-05 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 3e-05 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 3e-05 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 5e-05 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 6e-05 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 7e-05 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 8e-05 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 9e-05 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 1e-04 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 1e-04 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 1e-04 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 2e-04 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 2e-04 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 2e-04 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 2e-04 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 2e-04 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 3e-04 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 3e-04 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 4e-04 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 4e-04 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 4e-04 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 5e-04 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 6e-04 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 6e-04 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 7e-04 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 0.002 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 0.002 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 0.003 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 0.004 |
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 46.2 bits (109), Expect = 1e-05
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEM---QYEEITQVSRLPTKDKNK 901
L K+P +R + L HP+ G + + + +Y +I Q + D
Sbjct: 265 NLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPA 318
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 1e-05
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 818 DISKALGALTSDDLMPQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFNGY 875
D+ +T PL ++ S L +P R + Q L+ YF+
Sbjct: 227 DMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNR 286
Query: 876 YFEVPDEM 883
P
Sbjct: 287 PGPTPGCQ 294
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 2e-05
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 830 DLMPQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEE 887
+L + + + P L + L D +R + + L HPYF + + DE Q ++
Sbjct: 260 ELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH-DTEDEPQVQK 318
Query: 888 ITQ 890
Sbjct: 319 YDD 321
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 3e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEEI 888
+ L DP +R S D L+HPY N +Y E +I
Sbjct: 293 KMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQI 330
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 3e-05
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
L +P++R S ++ L+HPYF+ +
Sbjct: 265 NLLKCNPVQRISAEEALQHPYFSDFC 290
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 3e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880
+ L DP +R S L HP+F VP
Sbjct: 265 QMLHYDPNKRISAKAALAHPFFQDVTKPVP 294
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 5e-05
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYFNGYY 876
P + + L + L +P +R +Q L HPY YY
Sbjct: 257 KVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY 302
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 6e-05
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 807 IQNGLGSALTSDISK--ALGALTSDDLMPQPLQYVPSMFIPRGQPL--RCLDKDPLRRWS 862
I + +G D + AL QP++ + G+ L +CL +P +R S
Sbjct: 227 ILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS 286
Query: 863 CDQLLRHPYFNG 874
L HPYF
Sbjct: 287 AYSALSHPYFQD 298
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 43.5 bits (102), Expect = 7e-05
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDE 882
+ L DP R + Q L HP+ D
Sbjct: 262 KLLLADPNTRMTIHQALEHPWLTPGNAPGRDS 293
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (101), Expect = 8e-05
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY----FEVPDEMQYEEITQVSRL 894
L DP +R L+ HP+ VPD Y + +
Sbjct: 310 PMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGW 357
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (101), Expect = 9e-05
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQYEE 887
+CL+K+ RW+ QLL+HP+ + E+ E
Sbjct: 251 KCLEKNVDARWTTSQLLQHPFVTVDSNKPIRELIAEA 287
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.1 bits (101), Expect = 1e-04
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
++KDP +R++C+Q L+HP+ G
Sbjct: 246 HLMEKDPEKRFTCEQALQHPWIAG 269
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 833 PQPLQYVPSMFIPRGQPL--RCLDKDPLRRWSCDQLLRHPYF 872
P P + G L + L DP +R + Q L H YF
Sbjct: 243 PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYF 284
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 1e-04
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
+ L D +R + Q L H YF Y+
Sbjct: 283 KMLVLDSDKRITAAQALAHAYFAQYH 308
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 42.4 bits (99), Expect = 2e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
R L P +R++ ++ L HP+F Y
Sbjct: 252 RFLVVQPQKRYTAEEALAHPFFQQY 276
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (99), Expect = 2e-04
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPDEMQY 885
+CL K+P R QL+ H + E D +
Sbjct: 280 KCLIKNPAERADLKQLMVHAFIKRSDAEEVDFAGW 314
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGY 875
R L KDP +R + L+HP+
Sbjct: 253 RLLVKDPKKRMTIQDSLQHPWIKPK 277
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 2e-04
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876
R L+ P R + + H +F+
Sbjct: 285 RLLEYTPTARLTPLEACAHSFFDELR 310
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 42.1 bits (98), Expect = 2e-04
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
+ L D R + + + HPYF
Sbjct: 301 KLLRYDHQSRLTAREAMEHPYFYT 324
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 3e-04
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
+ L DP +R D L H +F
Sbjct: 287 KLLVLDPAQRIDSDDALNHDFF 308
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (97), Expect = 3e-04
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
R L K+ R + + L+HP+
Sbjct: 240 RLLVKERKSRMTASEALQHPWL 261
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 4e-04
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
RCLD D +R S +LL+H +
Sbjct: 252 RCLDMDVEKRGSAKELLQHQFL 273
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (95), Expect = 4e-04
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFN 873
+ L ++P R + + + ++N
Sbjct: 242 KILVENPSARITIPDIKKDRWYN 264
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (95), Expect = 4e-04
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNG 874
R L +P +R ++L HP+
Sbjct: 237 RLLKHNPSQRPMLREVLEHPWITA 260
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 5e-04
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877
CL P R + +++ HP+
Sbjct: 237 WCLALRPSDRPTFEEIQNHPWMQDVLL 263
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 6e-04
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 851 RCLDKDPLRRWSCDQLLRHPYF 872
L +P +R + + + HP+
Sbjct: 254 NLLKTEPTQRMTITEFMNHPWI 275
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (94), Expect = 6e-04
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 850 LRCLDKDPLRRWSCDQLLRHPYF 872
C+ ++ R+S LL H +F
Sbjct: 247 EGCIRQNKDERYSIKDLLNHAFF 269
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.4 bits (94), Expect = 7e-04
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 850 LRCLDKDPLRRWSCDQLLRHPYF 872
CL K P R + + LL+H +
Sbjct: 248 DSCLQKIPQDRPTSEVLLKHRFV 270
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 0.002
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 851 RCLDKDPLRRWSC-DQLLRHPYFNGYYFE 878
+ ++P +R + +HP F +E
Sbjct: 236 KLFVREPEKRLGVRGDIRQHPLFREINWE 264
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 0.002
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 851 RCLDKDPLRRWSC-----DQLLRHPYFNGYYFE 878
R L KDP +R C D++ H +F ++
Sbjct: 269 RLLMKDPKKRLGCGPRDADEIKEHLFFQKINWD 301
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (88), Expect = 0.003
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 818 DISKALGALTSDDLMPQPLQYVPSM--FIPRGQPLRCLDKDPLRRWSCDQLLRHPY 871
+ G + P +Y + I R L+ R S +++L +P
Sbjct: 218 SQKELAGKIREGKFRRIPYRYSDELNEII-----TRMLNLKDYHRPSVEEILENPL 268
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 0.004
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 840 PSMFIPRGQPL--RCLDKDPLRRWSCDQ------LLRHPYFNGYYFE 878
P F P+ + L + L D +R C++ L HP+F +E
Sbjct: 230 PEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWE 276
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 902 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.66 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.05 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.51 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.44 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.41 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.03 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.48 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.13 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.12 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.91 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.74 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.73 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.72 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 95.75 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 95.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 95.63 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.61 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 94.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 94.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 94.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 94.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 94.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 93.52 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 92.99 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 92.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 91.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 91.49 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 90.89 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 89.8 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 87.9 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 87.85 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 86.6 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 85.85 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 84.81 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 84.33 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 84.21 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 84.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 83.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 82.8 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 82.0 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 80.24 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.5e-13 Score=149.18 Aligned_cols=371 Identities=13% Similarity=0.054 Sum_probs=272.8
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG 168 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~ 168 (902)
+...+.+.|++++|.+.|+++.+... -+...+..+ ...|.+.|++++|...|+...+.+ |-+..+|..+...
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLL------SSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34557788999999999999987532 256677777 889999999999999999987765 5567889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHH
Q psy767 169 HSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASA 248 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 248 (902)
|.+.|++++|+..+........ .+...+..........+....+............. ...............+....+
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred hhhhcccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhh
Confidence 9999999999999999988753 34455555555555556655555544443332222 222333344445567778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhh
Q psy767 249 EGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNIC 328 (902)
Q Consensus 249 ~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~ 328 (902)
...+....... +.+...+..+...+...|++++|...+.+...
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------------------------ 197 (388)
T d1w3ba_ 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT------------------------------------ 197 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHH------------------------------------
Confidence 88777776653 45677888888999999999999999986321
Q ss_pred hcccccchHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CCCc-ccHHHHHHHHHHcCChHHHHHHHHHcc
Q psy767 329 FHWLEGPMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSIRRLLAQNGS-SLVN-GDYLDIIHALAVSGHGEYIDEIISKIQ 405 (902)
Q Consensus 329 ~~~~~~~~m~~~g~~p-~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 405 (902)
..| +..+|..+...|...|++++|...|.+... .+.. ..+..+...+...|++++|.+.|++..
T Consensus 198 -------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 264 (388)
T d1w3ba_ 198 -------------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp -------------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123 456788888999999999999999987422 2222 236778889999999999999999988
Q ss_pred cCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHh
Q psy767 406 PGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLIN 481 (902)
Q Consensus 406 ~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k 481 (902)
+ ..|+... +...+...|++++|.+.++.........+. ....+...+.+
T Consensus 265 ~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------------~~~~l~~~~~~ 317 (388)
T d1w3ba_ 265 E---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD------------------------SLNNLANIKRE 317 (388)
T ss_dssp H---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH------------------------HHHHHHHHHHT
T ss_pred H---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch------------------------hhhHHHHHHHH
Confidence 7 5666543 345567899999999999988765322111 13345566889
Q ss_pred cCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHh
Q psy767 482 KGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR-AFNLAVLIKAH 552 (902)
Q Consensus 482 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~ 552 (902)
.|++++|.+.|++.... .|..+.++..+...+...|+ +++|+..|++..+ +.|+ ...|..+..++
T Consensus 318 ~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~--l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTCHHHHHHHHHHHTTS---CTTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 99999999999988765 33456788889999999999 9999999999776 4675 55666666544
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.6e-14 Score=152.19 Aligned_cols=375 Identities=13% Similarity=0.038 Sum_probs=278.6
Q ss_pred cccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHH
Q psy767 52 KWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLI 131 (902)
Q Consensus 52 ~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li 131 (902)
.+-+.|++++|...++.+.. ..|-+...|..+...|.+.|++++|...|++..+... -+..+|..+ .
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l------~ 74 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNL------G 74 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH------H
T ss_pred HHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH------H
Confidence 34466888888888888776 1233678899999999999999999999999887542 256778888 9
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
..|.+.|++++|...+....... +.+...+..........+....+............. ...............+...
T Consensus 75 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (388)
T d1w3ba_ 75 NVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHH
T ss_pred HHhhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhh
Confidence 99999999999999999988765 445556666666666667777777666666555433 4445555566667777777
Q ss_pred HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy767 212 SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSG 291 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~ 291 (902)
.+...+........ .....+..+...+...|+++.|...+....... +-+..+|..+...|...|++++|...|.+..
T Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 230 (388)
T d1w3ba_ 153 EAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred hhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhH
Confidence 77776666554332 233455556667778999999999999888754 4467789999999999999999999998732
Q ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 292 SSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQ 371 (902)
Q Consensus 292 ~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~ 371 (902)
.. ...+...+..+...|.+.|++++|...|++
T Consensus 231 ~~------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 262 (388)
T d1w3ba_ 231 SL------------------------------------------------SPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HH------------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH------------------------------------------------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 21 123566778888999999999999999987
Q ss_pred -cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q psy767 372 -NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARSANING 445 (902)
Q Consensus 372 -m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~~~i~~ 445 (902)
+...|..+. |..+...+...|++++|.+.++.... ..|+... +...+...|++++|...|++..+. .|
T Consensus 263 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p 336 (388)
T d1w3ba_ 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---FP 336 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS---CT
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc---cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh---CC
Confidence 444444443 78899999999999999999998877 4444432 345566899999999999988763 23
Q ss_pred CcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCC
Q psy767 446 EQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQ 521 (902)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~ 521 (902)
..+. ..+++...|.+.|++++|...|++..+. .|..+.+|..+...|.+.|+
T Consensus 337 ~~~~---------------------~~~~la~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 337 EFAA---------------------AHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHH---------------------HHHHHHHHHHTTTCCHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTCC
T ss_pred CCHH---------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC
Confidence 3211 2345666789999999999999998775 33456778888888877664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.7e-08 Score=106.44 Aligned_cols=93 Identities=13% Similarity=-0.031 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy767 88 ALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIY 167 (902)
Q Consensus 88 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~ 167 (902)
-....+.+.|++++|...|++..+.... +..+|..+ ..+|...|+++.|...|+...+.+ |-+...|..+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l------g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 95 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYL------GTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 95 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH------HHHHHHcCChHHHHHHHHhhhccc-cccccccccccc
Confidence 3455678999999999999999976422 57788888 899999999999999999987754 456788999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q psy767 168 GHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 168 ~~~~~g~~~~A~~l~~~M~~~ 188 (902)
.|...|++++|.+.+++....
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~ 116 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRY 116 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccchhhHHHh
Confidence 999999999999999998775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=9.8e-09 Score=108.25 Aligned_cols=238 Identities=9% Similarity=-0.000 Sum_probs=153.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+.+.|++++|...|+...+.+ |-+..+|..+..+|...|++++|...|.+..+... -+...|..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccc
Confidence 446788999999999999998876 55788999999999999999999999999887632 2567888888999999999
Q ss_pred hHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 211 DSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 211 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
++|.+.++................. ......+...+...+..+...+.+.+|.+.|.+.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAE---------------------EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhh---------------------hhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 9999988887654322111000000 0000001111111222233344455555555441
Q ss_pred ccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy767 291 GSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLA 370 (902)
Q Consensus 291 ~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~ 370 (902)
.....-.++..++..+...+...|++++|...|+
T Consensus 163 ----------------------------------------------l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 196 (323)
T d1fcha_ 163 ----------------------------------------------VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 196 (323)
T ss_dssp ----------------------------------------------HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------------------------HHHhhcccccccchhhHHHHHHHHHHhhhhcccc
Confidence 1222223455666777777777777777777777
Q ss_pred H-cCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHhc
Q psy767 371 Q-NGSSLVNGD-YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN----HIYHLINKGQIDAAYRIVNTLARS 440 (902)
Q Consensus 371 ~-m~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~i~~l~~~g~~~~A~~~~~~m~~~ 440 (902)
+ +...|..+. |..+...|...|++++|.+.|++..+ +.|+... +-..|.+.|++++|...|++..+.
T Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhcccccccchhHHHHHHHHHH---HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6 333333333 66777777888888888888887766 4555443 334456778888888888776653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=6e-06 Score=85.84 Aligned_cols=151 Identities=9% Similarity=-0.027 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q psy767 138 GNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKI 217 (902)
Q Consensus 138 g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~ 217 (902)
+..+.|..+|+...+...+-+...|...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678889999887765556677888889999999999999999999987643333557888899999999999999999
Q ss_pred HhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 218 PSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+.+......................|+.+.|..+|+.+... .+.+...|...+..+.+.|+++.|..+|++
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ 228 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 88776544332222111111223356777777777777664 244566677777777777777777777765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=2e-05 Score=82.31 Aligned_cols=279 Identities=10% Similarity=-0.004 Sum_probs=161.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPIS-----EGVFNALIYGHSQANDMASAEGILTMMSQAGL-EPS----AQTYTKL 200 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~-----~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ty~~l 200 (902)
...+...|++++|..+++...+.. +.+ ...++.+...|...|++++|+..|++...... .++ ..++..+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 455678899999999999876643 222 24677778888999999999999988765311 112 2244555
Q ss_pred HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q psy767 201 MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 280 (902)
Q Consensus 201 l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~ 280 (902)
...+...|++..+...+.... .+...............+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al----------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAF----------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------------HHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence 666777777776666554322 1111111111111123455666778888899
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcC
Q psy767 281 DSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHG 360 (902)
Q Consensus 281 ~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g 360 (902)
+.+...+...... ....+......++..+...+...|
T Consensus 150 ~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 186 (366)
T d1hz4a_ 150 DEAEASARSGIEV-------------------------------------------LSSYQPQQQLQCLAMLIQCSLARG 186 (366)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------TTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHH-------------------------------------------hhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9888888763221 111222333455556666777777
Q ss_pred CHHHHHHHHHHc----CCCCCccc-----HHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHH
Q psy767 361 DMDSIRRLLAQN----GSSLVNGD-----YLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAY 431 (902)
Q Consensus 361 ~~~~A~~~~~~m----~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~ 431 (902)
+...+...+.+. ......+. +..+...+...|+++.|.+.+........-.+...
T Consensus 187 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------- 250 (366)
T d1hz4a_ 187 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL---------------- 250 (366)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG----------------
T ss_pred hHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH----------------
Confidence 777777666541 22211111 34455556677777777777776655111111000
Q ss_pred HHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHHHhcCChHHHHHHHHHHHHccC---CCCCccch
Q psy767 432 RIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSAN---INGEQLPV 508 (902)
Q Consensus 432 ~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~~k~g~~~~A~~l~~~m~~~~~---~~~~~~~~ 508 (902)
.....++...+...|++++|...++....... ..+.....
T Consensus 251 -------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 251 -------------------------------------QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 00112344456677777777777776553321 11112345
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy767 509 GGFLVRHMVKTNQPIDKVLAVCHRLTD 535 (902)
Q Consensus 509 ~n~li~~~~~~g~~~~~A~~l~~~m~~ 535 (902)
+..+...|.+.|+ +++|++.+++..+
T Consensus 294 ~~~la~~~~~~g~-~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 294 LLLLNQLYWQAGR-KSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 6777888888888 8999988887543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.8e-05 Score=82.43 Aligned_cols=194 Identities=8% Similarity=-0.016 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcC-CHHHHHHHHHHhhhCCCCCCHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDG-NIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
...|+.+-..+.+.+.+++|+.++++..+. .| +...|+.. ..++...| ++++|+..++...+.+ +-+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r------~~~l~~l~~~~~eal~~~~~al~~~-p~~~~ 113 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFR------RVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQ 113 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHH------HHHHHHhCcCHHHHHHHHHHHHHHH-Hhhhh
Confidence 456777777888999999999999999976 44 45567777 77777766 5999999999987765 55789
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
+|+.+-..+.+.|++++|++.|+.+.+.. .-+...|..+...+...|++++|.+.++.+.+.++... ..+.-...++.
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~-~a~~~r~~~l~ 191 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN-SVWNQRYFVIS 191 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-HHHHHHHHHHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH-HHHHHHHHHHH
Confidence 99999999999999999999999999874 33678999999999999999999999999887554332 23333333333
Q ss_pred hcC------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 241 VSS------DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 241 ~~g------~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
..+ .+++|...+....... +.+...|+.+...+.. ...+++.+.+..
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~ 244 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQ 244 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHH
T ss_pred HccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHH
Confidence 332 3567777777766654 4466777766555443 334556666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=6e-05 Score=78.46 Aligned_cols=195 Identities=9% Similarity=-0.077 Sum_probs=124.4
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhC----CCC-CCH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPN----RVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDK----TFP-ISE 159 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~ 159 (902)
....+...|++++|..++++..+.....+ ...+..+ ...|...|++++|...|+..... +.. ...
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~l------g~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVL------GEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 34456789999999999999887532212 1234444 78889999999999999987542 211 123
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCC--CCH-HHHHHHHHHHHHcCChhHHHHHHHhcccC----CCccc
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQ----AGLE--PSA-QTYTKLMCGYAKHGDMDSIKTKIPSLKPQ----SELFL 228 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~----~g~~--pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~----~~~~~ 228 (902)
..+..+...+...|++..|...+.+... .+.. +.. ..+..+...+...|+++.+...+...... +....
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 4567777888999999999999987653 2222 122 35556677888999999988887766542 22222
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 229 CFSFQLTNLLILVSSDMASAEGILTMMSQA--GLEP----SAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 229 ~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~--g~~p----d~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
...+......+...+....+...+.+.... .... ....+..+...+...|++++|...+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 238 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 238 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 233344444455567777777666655431 1111 123345555666677777777777765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=2.5e-05 Score=80.96 Aligned_cols=187 Identities=10% Similarity=0.002 Sum_probs=145.8
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q psy767 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMAS 177 (902)
Q Consensus 98 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~ 177 (902)
..++|..+|++..+...+-+...|... +..+.+.|+++.|..+|+.+....-......|...+..+.+.|+.+.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~y------a~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAY------ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHH------HHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHH
Confidence 357788899988865444466677777 88889999999999999998875432334579999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy767 178 AEGILTMMSQAGLEPSAQTYTKLMC-GYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMS 256 (902)
Q Consensus 178 A~~l~~~M~~~g~~pd~~ty~~ll~-a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~ 256 (902)
|.++|..+.+.+.. +...|..... -+...|+.+.|..+|+.+.... +.+...+..++.+....|+++.|..+|++..
T Consensus 153 ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 153 GRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999887533 3344443333 3445689999999999998752 2345667777888888999999999999987
Q ss_pred HCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q psy767 257 QAG-LEPS--AQTYTKLMCGYAKHGDMDSVRRLLAQSGS 292 (902)
Q Consensus 257 ~~g-~~pd--~~ty~~LI~a~~~~g~~~~A~~lf~~m~~ 292 (902)
... ..|+ ...|...+.--...|+.+.+.++++++..
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 754 3443 56899999988999999999999998643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.15 E-value=1.2e-05 Score=84.40 Aligned_cols=277 Identities=9% Similarity=-0.077 Sum_probs=178.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHH---HHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHH
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKL---MCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNL 237 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~l---l~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 237 (902)
+..++....+.+..++|+++++...+. .|+.. .|+.. +......+....
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~------------------------- 84 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEE------------------------- 84 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHH-------------------------
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHH-------------------------
Confidence 344444444444568899999888875 46554 34332 222333333221
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccH
Q psy767 238 LILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD--MDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYI 315 (902)
Q Consensus 238 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~--~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~ 315 (902)
..|.+++|..+++...... +.+...|..+..++...++ +++|+..+.+...
T Consensus 85 ---~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----------------------- 137 (334)
T d1dcea1 85 ---SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE----------------------- 137 (334)
T ss_dssp ---HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH-----------------------
T ss_pred ---HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHh-----------------------
Confidence 2334456777777776653 5577778877777777664 7888888886321
Q ss_pred HHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH-cCCCCCccc-HHHHHHHHHHcC
Q psy767 316 DEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYT-KLMCGYAKHGDMDSIRRLLAQ-NGSSLVNGD-YLDIIHALAVSG 392 (902)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~-~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~-~~~li~~~~~~g 392 (902)
. -+++...+. .+...+...|.+++|+..++. +...|.... |+.+...+...|
T Consensus 138 ------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 138 ------------------------A-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp ------------------------H-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred ------------------------h-CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 1 122445444 344677778999999999987 344444443 788888999999
Q ss_pred ChHHHHHHHHHcccCCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccch
Q psy767 393 HGEYIDEIISKIQPGVGYSADAANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADA 472 (902)
Q Consensus 393 ~~~~A~~l~~~m~~~~g~~pd~~t~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 472 (902)
++++|...+..... +.|+...+...+...+..+++...+..........+. ..
T Consensus 193 ~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~------------------------~~ 245 (334)
T d1dcea1 193 PQPDSGPQGRLPEN---VLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF------------------------RC 245 (334)
T ss_dssp CCCCSSSCCSSCHH---HHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS------------------------SC
T ss_pred CHHHHHHHHHHhHH---hHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhh------------------------HH
Confidence 99888777766655 5666666666667777777887777766554222211 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChhhH-HHHHH
Q psy767 473 ANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPRAFNL-AVLIK 550 (902)
Q Consensus 473 ~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd~~t~-~~ll~ 550 (902)
..+...+...|+.++|...+...... ++....++..+...+...|+ .++|++.+++..+ +.|+...| ..|..
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~-~~eA~~~~~~ai~--ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLY-EKETLQYFSTLKA--VDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--HCcccHHHHHHHHH
Confidence 23445567778899998888877654 23345677888889999999 9999999999877 46764444 54543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.04 E-value=1.2e-05 Score=84.56 Aligned_cols=270 Identities=9% Similarity=-0.049 Sum_probs=155.7
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHhHHHHHH-------HHHcCCHHHHHHHHHHhhhCCCCC
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRV-TYQQLISNSKLISK-------YCQDGNIEGATKILEFMRDKTFPI 157 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~li~~-------~~~~g~~~~A~~l~~~m~~~~~~p 157 (902)
++.++......+..++|+++++...+. .|+.. .|+.. ..++.. +...|++++|+.+++...+.+ |-
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r---~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk 105 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCR---REVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK 105 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHH---HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHH---HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 444444444444558999999999864 45543 34332 011222 334456788999999887765 55
Q ss_pred CHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHhcccCCCccchhhHHH
Q psy767 158 SEGVFNALIYGHSQAND--MASAEGILTMMSQAGLEPSAQTYTK-LMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQL 234 (902)
Q Consensus 158 ~~~~yn~Li~~~~~~g~--~~~A~~l~~~M~~~g~~pd~~ty~~-ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~ 234 (902)
+...|..+..++...++ +++|+..+..+.+.. .++...+.. ....+...+..++|...++.....++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p--------- 175 (334)
T d1dcea1 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--------- 175 (334)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---------
T ss_pred cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC---------
Confidence 77788888877777664 789999999998763 234555544 44566677888888888887777542
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCccc
Q psy767 235 TNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEY 314 (902)
Q Consensus 235 ~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~ 314 (902)
-+...|+.+-..+.+.|++++|...+...... .|....+...+...+....
T Consensus 176 ---------------------------~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 226 (334)
T d1dcea1 176 ---------------------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKELELVQNAFFTDPNDQ 226 (334)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHHHHHHHHHHHCSSCS
T ss_pred ---------------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHHHHHHHHHHhcchhH
Confidence 33444555555555555544433222210000 0001111111111121111
Q ss_pred HHHHHHHHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CCCccc-HHHHHHHHHHcC
Q psy767 315 IDEVSAIVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGS-SLVNGD-YLDIIHALAVSG 392 (902)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~~~-~~~li~~~~~~g 392 (902)
....... .. ..-.++...+..+...+...|+.++|...|.+... .|.... |..+...+...|
T Consensus 227 a~~~~~~---------------~l-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 290 (334)
T d1dcea1 227 SAWFYHR---------------WL-LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 290 (334)
T ss_dssp HHHHHHH---------------HH-HSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG
T ss_pred HHHHHHH---------------HH-HhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCC
Confidence 1110000 00 11123344455666777778888888888887433 222222 667788888889
Q ss_pred ChHHHHHHHHHcccCCCCCCCHHHHHH
Q psy767 393 HGEYIDEIISKIQPGVGYSADAANHIY 419 (902)
Q Consensus 393 ~~~~A~~l~~~m~~~~g~~pd~~t~i~ 419 (902)
+.++|.+.|++..+ +.|+...+..
T Consensus 291 ~~~eA~~~~~~ai~---ldP~~~~y~~ 314 (334)
T d1dcea1 291 YEKETLQYFSTLKA---VDPMRAAYLD 314 (334)
T ss_dssp GHHHHHHHHHHHHH---HCGGGHHHHH
T ss_pred CHHHHHHHHHHHHH---HCcccHHHHH
Confidence 99999999999888 7887655433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=3.9e-05 Score=76.72 Aligned_cols=197 Identities=12% Similarity=-0.022 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
...|..+-..|.+.|++++|...|++..+... -+..+|..+ -.+|.+.|++++|...|+...+.+ |-+..+|
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 108 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYL------GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAH 108 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhh------chHHHHHHHHHHhhhhhhHHHHHH-hhhhhhH
Confidence 34566777788888888888888888876432 256677777 888888888888888888887754 4455678
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh-
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV- 241 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (902)
..+..+|...|++++|.+.|+...+.. ..+......+..++.+.+..+....+............ ..... ..+..
T Consensus 109 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~ 184 (259)
T d1xnfa_ 109 LNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWNIV-EFYLGN 184 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHHHH-HHHTTS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhhHH-HHHHHH
Confidence 888888888888888888888887763 22444444444455555555544444444333222211 11111 11111
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Q psy767 242 ---SSDMASAEGILTMMSQAGLEP-SAQTYTKLMCGYAKHGDMDSVRRLLAQSGSS 293 (902)
Q Consensus 242 ---~g~~~~A~~l~~~m~~~g~~p-d~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~ 293 (902)
.+..+.+...+...... .| ...+|..+-..|...|++++|.+.|++....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 185 ISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp SCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11122222222111110 12 2346777888999999999999999986543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=5.6e-05 Score=75.55 Aligned_cols=214 Identities=9% Similarity=-0.043 Sum_probs=141.5
Q ss_pred HHHhccccchhHHHHHHHHHHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHH
Q psy767 29 TTVLGALGAFLVLLVLLFVYLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAK 108 (902)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~ 108 (902)
.+.+..........+.++..+...|.+.|++++|...|+..... -+-+..+|+.+..+|.+.|++++|+..|++
T Consensus 23 ~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 96 (259)
T d1xnfa_ 23 EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 96 (259)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCCHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence 33443333344556667778889999999999999999999871 233678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 109 LESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 109 M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
..+.... +..++..+ ..+|...|++++|...|+...+.. +.+......+..++.+.+..+.+..+.......
T Consensus 97 al~~~p~-~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 97 VLELDPT-YNYAHLNR------GIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHCTT-CTHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHhh-hhhhHHHH------HHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9975422 45567777 888999999999999999987765 445555555556666667666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q psy767 189 GLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL---FLCFSFQLTNLLILVSSDMASAEGILTMMSQAG 259 (902)
Q Consensus 189 g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g 259 (902)
.-. ...++ ++..+...................... .....+..+..++...|+++.|...|+......
T Consensus 169 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 169 DKE--QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCC--STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred chh--hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 322 22222 222222221111111111111111111 112344456677788999999999999988753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00012 Score=75.74 Aligned_cols=122 Identities=11% Similarity=-0.033 Sum_probs=95.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN-DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~ 209 (902)
-..+.+.+..++|+++++.+.+.+ |-+...|+....++...| ++++|+..++...+... -+..+|..+...+.+.|+
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHhhcc
Confidence 667788899999999999998876 667788998888888876 58999999999887642 256788888888999999
Q ss_pred hhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy767 210 MDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQ 289 (902)
Q Consensus 210 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~ 289 (902)
+++|+..+..+.+.. +.+...|+.+...+.+.|++++|++.|++
T Consensus 128 ~~eAl~~~~kal~~d------------------------------------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~ 171 (315)
T d2h6fa1 128 PSQELEFIADILNQD------------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQ 171 (315)
T ss_dssp CTTHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHhhhhhhh------------------------------------hcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998877777665532 44567777777777777777777777776
Q ss_pred h
Q psy767 290 S 290 (902)
Q Consensus 290 m 290 (902)
.
T Consensus 172 a 172 (315)
T d2h6fa1 172 L 172 (315)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.0016 Score=61.56 Aligned_cols=129 Identities=12% Similarity=0.008 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFN 163 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn 163 (902)
..||. ...+...|+++.|++.|++. ..|+..+|..+ -.+|...|++++|.+.|+...+.+ +-+...|+
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nl------G~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~ 74 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNI------GCMYTILKNMTEAEKAFTRSINRD-KHLAVAYF 74 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHH------HHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHH
Confidence 34554 44556778888888888753 35667777777 888888888888888888877765 55677788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 164 ALIYGHSQANDMASAEGILTMMSQAG------------L--EPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 164 ~Li~~~~~~g~~~~A~~l~~~M~~~g------------~--~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
.+-.+|.+.|++++|++.|+...... . .++ ..++..+..++.+.|++++|.+.+.......
T Consensus 75 ~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 75 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888888888888776431 0 011 2344455556666777776666666555433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.0012 Score=67.17 Aligned_cols=202 Identities=14% Similarity=-0.003 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhh----CC
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQ----GIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRD----KT 154 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~----~~ 154 (902)
..|......|...|++++|.+.|.+..+. +-.+ -..+|..+ ..+|.+.|++++|.+.++.... .+
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~------g~~y~~~~~~~~A~~~~~~a~~~~~~~~ 111 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA------YKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence 35788888899999999999999887652 2222 13467777 8889999999999999887543 22
Q ss_pred C-CCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCcc
Q psy767 155 F-PISEGVFNALIYGHSQ-ANDMASAEGILTMMSQ----AGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELF 227 (902)
Q Consensus 155 ~-~p~~~~yn~Li~~~~~-~g~~~~A~~l~~~M~~----~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~ 227 (902)
- .....++..+...|-. .|++++|++.|.+..+ .+-.+. ..+|..+...+...|++++|...++.+.......
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~ 191 (290)
T d1qqea_ 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence 1 1123456666666644 6999999999987753 222221 3467778899999999999999999876543322
Q ss_pred ch------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHHHc--CCHHHHHHHHHHhc
Q psy767 228 LC------FSFQLTNLLILVSSDMASAEGILTMMSQAGLE-P---SAQTYTKLMCGYAKH--GDMDSVRRLLAQSG 291 (902)
Q Consensus 228 ~~------~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~-p---d~~ty~~LI~a~~~~--g~~~~A~~lf~~m~ 291 (902)
.. ..+......+...|+.+.|...++...+.... + .......++.+|-.. +.+++|+..|+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 11 11223333445589999999999988765311 1 233456677776653 45888888887644
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00087 Score=57.70 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=65.0
Q ss_pred HHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q psy767 90 LRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGH 169 (902)
Q Consensus 90 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~ 169 (902)
...+.+.|++++|+.+|++..+.. +-+...|..+ ..+|.+.|++++|...++...+.+ +.+...|..+..++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~------a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNR------SAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-Ccchhhhhcc------cccccccccccccchhhhhHHHhc-cchhhHHHHHHHHH
Confidence 445666777777777777776543 2255566666 677777777777777777776655 55667777777777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 170 SQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 170 ~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
...|++++|+..|+...+. .|+..
T Consensus 82 ~~~~~~~~A~~~~~~a~~~--~p~~~ 105 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKH--EANNP 105 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHccCHHHHHHHHHHHHHh--CCCCH
Confidence 7777777777777777765 44443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.39 E-value=0.054 Score=55.18 Aligned_cols=283 Identities=13% Similarity=0.101 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
||..--..+..-|.+.|.++.|..+|..+. -|..+ +..+.+.++++.|.+++.... +..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl------~~~~v~l~~~~~avd~~~k~~------~~~ 70 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRL------ASTLVHLGEYQAAVDGARKAN------STR 70 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHH------HHHHHTTTCHHHHHHHHHHHT------CHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHH------HHHHHhhccHHHHHHHHHHcC------CHH
Confidence 444444556666778888888888887654 15566 777778888888777665431 336
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLIL 240 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (902)
+|..+...|.+......| .+.......+......++..|-..|.+++...+++......
T Consensus 71 ~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---------------- 129 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---------------- 129 (336)
T ss_dssp HHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----------------
T ss_pred HHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC----------------
Confidence 777777777777655443 22233344455566677777777777777666666543321
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCcccHHHHHH
Q psy767 241 VSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSLVNGDYLDIIHALAVSGHGEYIDEVSA 320 (902)
Q Consensus 241 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~~~p~~~tl~~~l~~~~~~~~~~~~~~ 320 (902)
..+...++-++..|++.+ .++..+.++.... .-+....+..
T Consensus 130 --------------------~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~---~y~~~k~~~~--------------- 170 (336)
T d1b89a_ 130 --------------------RAHMGMFTELAILYSKFK-PQKMREHLELFWS---RVNIPKVLRA--------------- 170 (336)
T ss_dssp --------------------TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST---TSCHHHHHHH---------------
T ss_pred --------------------ccchHHHHHHHHHHHHhC-hHHHHHHHHhccc---cCCHHHHHHH---------------
Confidence 455666777777777654 3444444433211 1111111111
Q ss_pred HHHHhhhhhcccccchHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHH
Q psy767 321 IVCFVNICFHWLEGPMMSQAGLEPSAQTYTKLMCGYAKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEI 400 (902)
Q Consensus 321 l~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l 400 (902)
..+.+. |.-++-.|.+.|++++|..+.-. ..++......++..+.+..+.+...++
T Consensus 171 ----------------c~~~~l------~~elv~Ly~~~~~~~~A~~~~i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~ 226 (336)
T d1b89a_ 171 ----------------AEQAHL------WAELVFLYDKYEEYDNAIITMMN--HPTDAWKEGQFKDIITKVANVELYYRA 226 (336)
T ss_dssp ----------------HHTTTC------HHHHHHHHHHTTCHHHHHHHHHH--STTTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred ----------------HHHcCC------hHHHHHHHHhcCCHHHHHHHHHH--cchhhhhHHHHHHHHHccCChHHHHHH
Confidence 111111 34466677788888888777543 222333456677778888888777777
Q ss_pred HHHcccCCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHHHHHHH
Q psy767 401 ISKIQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAANHIYHL 479 (902)
Q Consensus 401 ~~~m~~~~g~~pd~~t-~i~~l~~~g~~~~A~~~~~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~li~~~ 479 (902)
.....+ ..|+..+ ++......-++. .++..+
T Consensus 227 i~~yL~---~~p~~i~~lL~~v~~~~d~~---------------------------------------------r~V~~~ 258 (336)
T d1b89a_ 227 IQFYLE---FKPLLLNDLLMVLSPRLDHT---------------------------------------------RAVNYF 258 (336)
T ss_dssp HHHHHH---HCGGGHHHHHHHHGGGCCHH---------------------------------------------HHHHHH
T ss_pred HHHHHH---cCHHHHHHHHHHhccCCCHH---------------------------------------------HHHHHH
Confidence 766655 4565543 333333333333 344445
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCC
Q psy767 480 INKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQ 521 (902)
Q Consensus 480 ~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~ 521 (902)
-+.+++.-...+++.....+ ...+.+++..-|...++
T Consensus 259 ~k~~~l~li~p~Le~v~~~n-----~~~vn~al~~lyie~~d 295 (336)
T d1b89a_ 259 SKVKQLPLVKPYLRSVQNHN-----NKSVNESLNNLFITEED 295 (336)
T ss_dssp HHTTCTTTTHHHHHHHHTTC-----CHHHHHHHHHHHHHTTC
T ss_pred HhcCCcHHHHHHHHHHHHcC-----hHHHHHHHHHHHhCcch
Confidence 55556665566666554322 22466777777877777
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=0.0039 Score=63.04 Aligned_cols=160 Identities=11% Similarity=-0.045 Sum_probs=95.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDK----TFPI-SEGVFNALIYGHSQANDMASAEGILTMMSQA----GLE-PSAQTYTKL 200 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~-pd~~ty~~l 200 (902)
...|...|++++|.+.|+...+. +-++ -..+|+.+..+|.+.|++++|.+.|+..... |-. ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 66677888899998888876432 2122 2357888888899999999999888866442 211 113345555
Q ss_pred HHHHHH-cCChhHHHHHHHhcccC----CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-HHHH
Q psy767 201 MCGYAK-HGDMDSIKTKIPSLKPQ----SELF-LCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPS-----A-QTYT 268 (902)
Q Consensus 201 l~a~~~-~g~~~~a~~l~~~~~~~----~~~~-~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~-~ty~ 268 (902)
...|.. .|++++|...+...... +..+ ....+.-+..++...|++++|...|++......... . ..|.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555644 58888888877765421 1111 122344455555666777777777776655321111 1 1233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q psy767 269 KLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 269 ~LI~a~~~~g~~~~A~~lf~~m 290 (902)
.++..+...|+++.|...|.+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3444555667777777666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.003 Score=59.53 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=88.9
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q psy767 132 SKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMD 211 (902)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~~ 211 (902)
..+...|+++.|++.|+.+ .+|+..+|..+-.+|...|++++|++.|++..+.. +-+...|..+-.+|.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 3457789999999999865 35677889999999999999999999999999875 336778999999999999999
Q ss_pred HHHHHHHhcccCCCc------------c---chhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q psy767 212 SIKTKIPSLKPQSEL------------F---LCFSFQLTNLLILVSSDMASAEGILTMMSQA 258 (902)
Q Consensus 212 ~a~~l~~~~~~~~~~------------~---~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~ 258 (902)
+|...|+........ . ....+.-+..++...|++++|.+.+......
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999888876432110 0 0122223334445566666666666655543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.0016 Score=55.96 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=80.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
-..+.+.|++++|..+|+...+.+ |-+...|+.+-.+|...|++++|+..|....+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 566788999999999999998876 6678889999999999999999999999999875 34778899999999999999
Q ss_pred hHHHHHHHhcccCC
Q psy767 211 DSIKTKIPSLKPQS 224 (902)
Q Consensus 211 ~~a~~l~~~~~~~~ 224 (902)
++|...|+......
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.21 E-value=0.0015 Score=61.70 Aligned_cols=97 Identities=7% Similarity=-0.049 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CH
Q psy767 116 PNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEP-SA 194 (902)
Q Consensus 116 pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~ 194 (902)
|+...+... -..|.+.|++++|...|+.....+ |-+...|+.+..+|.+.|++++|+..|+...+. .| +.
T Consensus 2 ~~a~~l~~~------Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~ 72 (201)
T d2c2la1 2 PSAQELKEQ------GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSV 72 (201)
T ss_dssp CCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCH
T ss_pred hhHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcH
Confidence 555566666 778889999999999998887765 667788998999999999999999999998765 45 46
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHhcc
Q psy767 195 QTYTKLMCGYAKHGDMDSIKTKIPSLK 221 (902)
Q Consensus 195 ~ty~~ll~a~~~~g~~~~a~~l~~~~~ 221 (902)
.+|..+..+|...|++++|...|+...
T Consensus 73 ~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 73 KAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 688888889999999998888777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.21 E-value=0.002 Score=60.81 Aligned_cols=99 Identities=9% Similarity=-0.117 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q psy767 81 LDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEG 160 (902)
Q Consensus 81 pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 160 (902)
|+.......-..|.+.|++++|+..|.+..... +-+...|..+ ..+|.+.|+++.|...|+...+.+ |-+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~l------g~~y~~~~~~~~Ai~~~~~al~l~-p~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNR------ALCYLKMQQPEQALADCRRALELD-GQSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHH------HHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhH------HHHHhhhhhhhhhhHHHHHHHHhC-CCcHH
Confidence 677777788889999999999999999988764 2367778888 999999999999999999988764 44678
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 161 VFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 161 ~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
+|..+..+|.+.|++++|+..|+...+
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999998765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.0044 Score=56.24 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=77.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
-..|.+.|++++|...|+...+.+ |-+...|..+..+|...|++++|+..|+...+.. .-+..+|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 566789999999999999988876 6678889999999999999999999999998874 23557899999999999999
Q ss_pred hHHHHHHHhcccC
Q psy767 211 DSIKTKIPSLKPQ 223 (902)
Q Consensus 211 ~~a~~l~~~~~~~ 223 (902)
++|...++.....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9888887776653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.004 Score=56.54 Aligned_cols=96 Identities=7% Similarity=-0.057 Sum_probs=83.8
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNAL 165 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~L 165 (902)
+...-..|.+.|++++|+..|.+..+... -+...|..+ ..+|...|++++|...|+...+.+ +-+..+|..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~l------g~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~ 84 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNR------SLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 84 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhh------HHHHHhccccchHHHHHHHHHHHc-ccchHHHHHH
Confidence 44556678899999999999999988653 367778888 999999999999999999998876 5677899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC
Q psy767 166 IYGHSQANDMASAEGILTMMSQAG 189 (902)
Q Consensus 166 i~~~~~~g~~~~A~~l~~~M~~~g 189 (902)
..+|...|++++|...|++.....
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998863
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.91 E-value=0.003 Score=53.67 Aligned_cols=89 Identities=15% Similarity=0.034 Sum_probs=57.0
Q ss_pred HHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q psy767 89 LLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYG 168 (902)
Q Consensus 89 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~ 168 (902)
+...+.+.|++++|...|++..+.... +...|..+ ..++.+.|++++|...|+...+.+ |-+...|..+...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l------g~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~ 93 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSL------GLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhh------hhhhhhhhhHHHhhcccccccccc-cccccchHHHHHH
Confidence 344556667777777777776654321 45556666 666667777777777777666554 4456666667777
Q ss_pred HHhCCCHHHHHHHHHHH
Q psy767 169 HSQANDMASAEGILTMM 185 (902)
Q Consensus 169 ~~~~g~~~~A~~l~~~M 185 (902)
|...|++++|++.|++.
T Consensus 94 y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 94 HTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77777777777766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0017 Score=56.23 Aligned_cols=94 Identities=7% Similarity=0.033 Sum_probs=73.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q psy767 130 LISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDM---ASAEGILTMMSQAGLEPSA-QTYTKLMCGYA 205 (902)
Q Consensus 130 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~---~~A~~l~~~M~~~g~~pd~-~ty~~ll~a~~ 205 (902)
|++.+...+++++|++.|+.....+ +.+..++..+..++.+.++. ++|+.+|++....+..|+. .+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4788888899999999999988876 67788888888888876554 4689999988876433332 36777888899
Q ss_pred HcCChhHHHHHHHhcccCC
Q psy767 206 KHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 206 ~~g~~~~a~~l~~~~~~~~ 224 (902)
+.|++++|.+.|+.+.+..
T Consensus 84 ~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHhC
Confidence 9999998888888776643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.74 E-value=0.0084 Score=55.56 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=82.9
Q ss_pred CHHHHHHH---HHHHHHCCCchHHHHHHHHHHHC--CC-CCC----HHHHHHHH--H------hHHHHHHHHHcCCHHHH
Q psy767 82 DISHYNAL---LRVYLDNEHTFSPTDFLAKLESQ--GI-EPN----RVTYQQLI--S------NSKLISKYCQDGNIEGA 143 (902)
Q Consensus 82 d~~~yn~l---i~~~~~~g~~~~A~~l~~~M~~~--g~-~pd----~~t~~~ll--~------~~~li~~~~~~g~~~~A 143 (902)
|+..|-.+ .......|++++|.+.|...... |. -++ ...+..-. . +..+...+.+.|++++|
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 34444443 35678899999999999998763 21 111 01100000 0 24448888899999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q psy767 144 TKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQ-----AGLEPSAQT 196 (902)
Q Consensus 144 ~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t 196 (902)
...++.+...+ +-+...|..++.+|.+.|+.++|++.|+++.. .|+.|+..+
T Consensus 87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999998876 67889999999999999999999999998743 589998765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.0037 Score=54.00 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=82.1
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCC---HHHHHHHHHHhhhCCCCCC-HHHH
Q psy767 87 NALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGN---IEGATKILEFMRDKTFPIS-EGVF 162 (902)
Q Consensus 87 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~-~~~y 162 (902)
..++..+...+++++|.+.|+.....+ +.+..++..+ ..++.+.++ +++|..+|+.....+-.|+ ..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~------a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~ 75 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEY------AWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYV 75 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHH------HHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHH------HHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHH
Confidence 467888889999999999999998765 3366777777 777776554 4569999999887664343 2477
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q psy767 163 NALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLM 201 (902)
Q Consensus 163 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll 201 (902)
..|-.+|.+.|++++|++.|+...+. .|+......+.
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~ 112 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELE 112 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 88899999999999999999999986 57655444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.72 E-value=0.004 Score=52.80 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=74.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDM 210 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~~ 210 (902)
...+.+.|++++|...|+.....+ |-+...|..+..++.+.|++++|+..|+...+.. +-+...|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 456778999999999999988765 5578889999999999999999999999988864 23577888899999999999
Q ss_pred hHHHHHHHhc
Q psy767 211 DSIKTKIPSL 220 (902)
Q Consensus 211 ~~a~~l~~~~ 220 (902)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.64 E-value=0.37 Score=48.66 Aligned_cols=203 Identities=12% Similarity=0.093 Sum_probs=124.2
Q ss_pred HHHhcccCCCCCCcCcccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q psy767 48 YLNSKWCSEPSLGPGNLPCEDPFSVHTGELDVPLDISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISN 127 (902)
Q Consensus 48 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~g~~pd~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 127 (902)
.+...|-+.|.++.|..++..+.. |..++..|.+.+++..|.+++.... +..+|..+
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d--------------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~--- 75 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN--------------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV--- 75 (336)
T ss_dssp ----------CTTTHHHHHHHTTC--------------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC--------------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH---
Confidence 345666688888888888877776 8889999999999999988886542 56678888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q psy767 128 SKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKH 207 (902)
Q Consensus 128 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~ 207 (902)
..++.+......|. +.......+......++..|-..|.+++...+++..... -.++...++.++..|++.
T Consensus 76 ---~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 76 ---CFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp ---HHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred ---HHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 88888777665542 223333445566678999999999999999999987543 256777888999999886
Q ss_pred CChhHHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy767 208 GDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLL 287 (902)
Q Consensus 208 g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf 287 (902)
+. ++..+.+...... =+.+.+ .+...+.++ |.-++-.|.+.|++++|..+.
T Consensus 147 ~~-~kl~e~l~~~s~~-------------------y~~~k~---~~~c~~~~l------~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 147 KP-QKMREHLELFWSR-------------------VNIPKV---LRAAEQAHL------WAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp CH-HHHHHHHHHHSTT-------------------SCHHHH---HHHHHTTTC------HHHHHHHHHHTTCHHHHHHHH
T ss_pred Ch-HHHHHHHHhcccc-------------------CCHHHH---HHHHHHcCC------hHHHHHHHHhcCCHHHHHHHH
Confidence 53 3333333332111 011222 222232222 455667777777777777665
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCCcc
Q psy767 288 AQSGSSLVNGDYLDIIHALAVSGHGE 313 (902)
Q Consensus 288 ~~m~~~~~~p~~~tl~~~l~~~~~~~ 313 (902)
-+ ......+...++..+....+.+
T Consensus 198 i~--~~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 198 MN--HPTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp HH--STTTTCCHHHHHHHHHHCSSTH
T ss_pred HH--cchhhhhHHHHHHHHHccCChH
Confidence 43 2222334455555555554444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.21 E-value=0.05 Score=48.54 Aligned_cols=98 Identities=6% Similarity=-0.110 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHCC----CCCCHH-----------HHHHHHHhHHHHHHHHHcCCHHHHHHHHH
Q psy767 84 SHYNALLRVYLDNEHTFSPTDFLAKLESQG----IEPNRV-----------TYQQLISNSKLISKYCQDGNIEGATKILE 148 (902)
Q Consensus 84 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g----~~pd~~-----------t~~~ll~~~~li~~~~~~g~~~~A~~l~~ 148 (902)
..+..-...+.+.|++.+|+..|.+....- ..++.. +|+.+ ..+|.+.|++++|+..++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nl------a~~~~~l~~~~~Al~~~~ 91 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL------ATCYNKNKDYPKAIDHAS 91 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhH------HHHHHHhcccchhhhhhh
Confidence 445666677889999999999999877531 112221 23333 666677777777777777
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 149 FMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 149 ~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
...+.+ |.+..+|..+..+|...|++++|+..|+...+.
T Consensus 92 ~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 92 KVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 776655 556677777777777777777777777777765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.18 E-value=0.61 Score=44.94 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCC
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ----DGNIEGATKILEFMRDKTFPI 157 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p 157 (902)
|+..+..|-..+-+.+++.+|+++|++..+.| |...+..| -.+|.. ..+...|...++.-...+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~L------g~~y~~G~~~~~d~~~a~~~~~~a~~~~~-- 69 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNL------GVLYYQGQGVEKNLKKAASFYAKACDLNY-- 69 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHH------HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHH------HHHHHcCCCcchhHHHHHHhhcccccccc--
Confidence 34566667777778889999999999888776 45555555 555554 5678888888888777763
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q psy767 158 SEGVFNALIYGHSQ----ANDMASAEGILTMMSQAG 189 (902)
Q Consensus 158 ~~~~yn~Li~~~~~----~g~~~~A~~l~~~M~~~g 189 (902)
...+..|...+.. ..+.+.|...|+.....|
T Consensus 70 -~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 70 -SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred -cchhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 2444444444433 456788888888877765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.034 Score=50.69 Aligned_cols=97 Identities=12% Similarity=-0.063 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCC-----CCCC---------HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQG-----IEPN---------RVTYQQLISNSKLISKYCQDGNIEGATKILEFM 150 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g-----~~pd---------~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m 150 (902)
.+...-..+.+.|++++|+..|.+....- .... ..+|+.+ ..+|.+.|++++|...++..
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nl------a~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL------AMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHH------HHHHHhhhhcccccchhhhh
Confidence 44555667888999999999999876531 1111 1223333 66677778888888877777
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 151 RDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 151 ~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
...+ |-++..|..+..+|...|++++|+..|+...+.
T Consensus 89 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 89 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6655 456777777777788888888888888877765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.042 Score=47.35 Aligned_cols=103 Identities=7% Similarity=-0.021 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCC---C-
Q psy767 85 HYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKT--FPI---S- 158 (902)
Q Consensus 85 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p---~- 158 (902)
.+-.+-..|.+.|++++|+..|.+..+... .+...|..+ ..+|.+.|++++|...++.+.+.+ ... .
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~------a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~ 78 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQ------AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhH------HHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence 455677789999999999999999997643 367788888 999999999999999999976532 110 1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 159 EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 159 ~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
..+|..+-..+...+++++|++.|+..... .|+...
T Consensus 79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 246777778888899999999999887764 345443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.026 Score=48.78 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=65.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHHHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLE-PS-----AQTYTKLMCGY 204 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~-pd-----~~ty~~ll~a~ 204 (902)
-..|.+.|++++|...|+...+.+ |.+...|..+-.+|.+.|++++|+..++++.+.... +. ..+|..+-..+
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 667888899999999999888775 567888888999999999999999999988753210 11 13555556666
Q ss_pred HHcCChhHHHHHHHhc
Q psy767 205 AKHGDMDSIKTKIPSL 220 (902)
Q Consensus 205 ~~~g~~~~a~~l~~~~ 220 (902)
...+++++|...|...
T Consensus 90 ~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 6666777666666544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=95.75 E-value=0.6 Score=45.00 Aligned_cols=44 Identities=11% Similarity=0.013 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q psy767 160 GVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK 206 (902)
Q Consensus 160 ~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~ 206 (902)
..+..|-..+-+.|++++|++.|+...+.| |...+..|-..|..
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~ 46 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQ 46 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 445555555666677777777777776655 44444444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.088 Score=47.78 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=71.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC-----CCC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT-----FPI---------SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~-----~~p---------~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
-..+.+.|++++|...|+...... ... -..+|+.+..+|.+.|++++|+..++...... +-+..+
T Consensus 20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a 98 (170)
T d1p5qa1 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKG 98 (170)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhh
Confidence 567889999999999998875421 110 12457778888899999999999999888864 226778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
|..+..+|...|++++|...|+......
T Consensus 99 ~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 99 LSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8888889999999998888888876643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.63 E-value=0.045 Score=50.36 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHcCCCHHHHHHHHHHHH-----HCCCCCChhhHHH
Q psy767 473 ANHIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLT-----DENLHPRAFNLAV 547 (902)
Q Consensus 473 ~~li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~-----~~g~~Pd~~t~~~ 547 (902)
.++...+.+.|++++|...++.+.... |.+...|..++.+|...|+ .++|+..|+++. +.|+.|...|-..
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 346677899999999999999998863 3356789999999999999 999999999963 4699999866433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.62 E-value=0.068 Score=48.44 Aligned_cols=96 Identities=8% Similarity=0.006 Sum_probs=64.5
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 86 YNALLRVYLDNEHTFSPTDFLAKLESQG--------------IEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFM 150 (902)
Q Consensus 86 yn~li~~~~~~g~~~~A~~l~~~M~~~g--------------~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m 150 (902)
+......+...|++.+|+..|.+..+.- +.| +...|..+ ..+|.+.|++++|+..++..
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nl------a~~~~~~~~~~~Ai~~~~~a 103 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNI------GACKLKMSDWQGAVDSCLEA 103 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHH------HHHHHhhcccchhhhhhhhh
Confidence 4455666778999999999998765310 111 12223333 56667777777777777777
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 151 RDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 151 ~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
.+.+ |-+...|..+..+|.+.|++++|+..|+...+.
T Consensus 104 l~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 104 LEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7665 556677777777777777777777777777765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.61 E-value=0.018 Score=56.90 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=54.2
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q psy767 135 CQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ-TYTKLMCGY 204 (902)
Q Consensus 135 ~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~ll~a~ 204 (902)
.+.|++++|...++...+.. |-|...+..+...|+..|++++|.+.|+...+. .|+.. .+..+...+
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll 74 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV 74 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 46799999999999998876 778899999999999999999999999999886 45543 444443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=94.57 E-value=0.24 Score=43.72 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=69.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC----CCCC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDKT----FPIS-----------EGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~~----~~p~-----------~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
-..+.+.|++.+|...|......- ..++ ..+|+.+..+|.+.|++++|++.+....+.. +.+..
T Consensus 24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~k 102 (153)
T d2fbna1 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVK 102 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhh
Confidence 566788999999999998865421 1111 2456778888888899999999988888764 33667
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhcccC
Q psy767 196 TYTKLMCGYAKHGDMDSIKTKIPSLKPQ 223 (902)
Q Consensus 196 ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 223 (902)
+|..+..++...|++++|...|+.....
T Consensus 103 a~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 103 ALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888888877776553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=94.53 E-value=0.15 Score=45.93 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH---CCCCCCH-----------HHHHHHHHhHHHHHHHHHcCCHHHHHHHHH
Q psy767 83 ISHYNALLRVYLDNEHTFSPTDFLAKLES---QGIEPNR-----------VTYQQLISNSKLISKYCQDGNIEGATKILE 148 (902)
Q Consensus 83 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~---~g~~pd~-----------~t~~~ll~~~~li~~~~~~g~~~~A~~l~~ 148 (902)
...+......+.+.|++.+|...|.+... ....++. .+|+.+ ..+|.+.|++++|+..++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nl------a~~~~~l~~~~~Ai~~~~ 88 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL------AMCYLKLREYTKAVECCD 88 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhH------HHHHHHhhhcccchhhhh
Confidence 34566677788899999999999987653 1111111 112223 566778888888888888
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q psy767 149 FMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA 188 (902)
Q Consensus 149 ~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~ 188 (902)
.....+ |.+..+|..+..+|...|++++|+..|......
T Consensus 89 ~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 89 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 887765 667788888888888888888888888888875
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.52 E-value=0.17 Score=45.53 Aligned_cols=91 Identities=10% Similarity=0.047 Sum_probs=62.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC--------------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRDK--------------TF-PISEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQ 195 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~~--------------~~-~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 195 (902)
...+.+.|+++.|...|.+..+. .+ +.+...|+.+-.+|.+.|++++|+..|+...+.. +-+..
T Consensus 34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~ 112 (169)
T d1ihga1 34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTK 112 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhh
Confidence 55667888999888888765321 01 1233456667777778888888888888877754 23556
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 196 TYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 196 ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
+|..+..++...|++++|...|....+
T Consensus 113 a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 113 ALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777788887777776666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=94.51 E-value=0.017 Score=57.19 Aligned_cols=121 Identities=12% Similarity=0.000 Sum_probs=77.6
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA 172 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~ 172 (902)
..+.|++++|+..+++..+... -|...+..+ ...|+..|++++|.+.|+...+.. +-+...+..+...+...
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~L------a~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSF------IELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAA 77 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 4567999999999999998743 377888888 999999999999999999988764 33345555554444333
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhccc
Q psy767 173 NDMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKP 222 (902)
Q Consensus 173 g~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 222 (902)
+..+++..-+..-...+ .|+ ...+......+...|+.++|...++...+
T Consensus 78 ~~~~~a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33332222111111111 222 23344455667777888887777766544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=94.29 E-value=0.23 Score=44.65 Aligned_cols=93 Identities=9% Similarity=-0.008 Sum_probs=68.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhh---CCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q psy767 131 ISKYCQDGNIEGATKILEFMRD---KTFPI-----------SEGVFNALIYGHSQANDMASAEGILTMMSQAGLEPSAQT 196 (902)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~m~~---~~~~p-----------~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 196 (902)
-..+.+.|++++|...|+.... ....+ ....|+.+-.+|.+.|++++|+..++...... +.+..+
T Consensus 22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a 100 (168)
T d1kt1a1 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKG 100 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHH
Confidence 6778899999999999987542 11111 12345667778888899999999988888764 346668
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhcccCC
Q psy767 197 YTKLMCGYAKHGDMDSIKTKIPSLKPQS 224 (902)
Q Consensus 197 y~~ll~a~~~~g~~~~a~~l~~~~~~~~ 224 (902)
|..+..+|...|++++|...|..+....
T Consensus 101 ~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 101 LYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888877776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=93.52 E-value=0.29 Score=43.26 Aligned_cols=103 Identities=12% Similarity=-0.012 Sum_probs=67.9
Q ss_pred HHHHHH--HHHHHhCCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCc
Q psy767 160 GVFNAL--IYGHSQANDMASAEGILTMMSQAGL-EPS----------AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSEL 226 (902)
Q Consensus 160 ~~yn~L--i~~~~~~g~~~~A~~l~~~M~~~g~-~pd----------~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~ 226 (902)
.+|+.+ ...+.+.|++++|+..|++..+..- .|+ ...|+.+..+|...|++++|...++.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~------- 80 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK------- 80 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh-------
Confidence 456666 4455677999999999998875311 121 35677888888888888888776554
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy767 227 FLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLE---PSAQTYTKLMCGYAKHGDMDSVRRLLAQS 290 (902)
Q Consensus 227 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~---pd~~ty~~LI~a~~~~g~~~~A~~lf~~m 290 (902)
|+.++......... ....+|+.+-.+|...|++++|++.|++.
T Consensus 81 ---------------------al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 81 ---------------------ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp ---------------------HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------------hhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333332221110 01235677788999999999999999874
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=92.99 E-value=0.63 Score=40.88 Aligned_cols=99 Identities=9% Similarity=-0.057 Sum_probs=70.8
Q ss_pred HHHHHHH--HHHHHHCCCchHHHHHHHHHHHCC-CCCC----------HHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHH
Q psy767 83 ISHYNAL--LRVYLDNEHTFSPTDFLAKLESQG-IEPN----------RVTYQQLISNSKLISKYCQDGNIEGATKILEF 149 (902)
Q Consensus 83 ~~~yn~l--i~~~~~~g~~~~A~~l~~~M~~~g-~~pd----------~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~ 149 (902)
..+|+.+ ...+.+.|++++|+..|++..+.. -.|+ ...|+.+ ..+|.+.|++++|..-++.
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nl------g~~~~~lg~~~~A~~~~~~ 80 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGL------AEALAGLRSFDEALHSADK 80 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHH------HHHHHHcCccchhhHhhhh
Confidence 3567777 445667799999999999987521 1122 3456666 8899999999999988888
Q ss_pred hhhC-----CCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy767 150 MRDK-----TFPIS-----EGVFNALIYGHSQANDMASAEGILTMMSQ 187 (902)
Q Consensus 150 m~~~-----~~~p~-----~~~yn~Li~~~~~~g~~~~A~~l~~~M~~ 187 (902)
.... ...++ ...|+.+-.+|...|++++|+..|++..+
T Consensus 81 al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 81 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6531 11121 23567778889999999999999888654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.14 E-value=0.34 Score=52.19 Aligned_cols=117 Identities=13% Similarity=-0.074 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH
Q psy767 82 DISHYNALLRVYLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGV 161 (902)
Q Consensus 82 d~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 161 (902)
+...|+.+-..+.+.|+.++|...+....... | ...+..+ -..+...|++++|...|+...+.. |-+...
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~L------G~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~ 188 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHL------GDIARYRNQTSQAESYYRHAAQLV-PSNGQP 188 (497)
T ss_dssp ------------------------CCHHHHHH--H-HHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHC-TTBSHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHH------HHHHHHcccHHHHHHHHHHHHHHC-CCchHH
Confidence 44556666677777777777777666544321 1 2344455 777777888888888888776654 445577
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 162 FNALIYGHSQANDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 209 (902)
Q Consensus 162 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~~g~ 209 (902)
|+.|-..|...|+..+|+..|.+..... .|-..++..|...+.+...
T Consensus 189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 189 YNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhh
Confidence 8888888888888888888888877664 5667777777777766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.75 E-value=0.22 Score=43.58 Aligned_cols=122 Identities=10% Similarity=-0.005 Sum_probs=81.4
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q psy767 134 YCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQA----------NDMASAEGILTMMSQAGLEPSAQTYTKLMCG 203 (902)
Q Consensus 134 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~----------g~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a 203 (902)
|-+.+.+++|...|+...+.+ |-+..+|+.+-.+|... +.+++|+..|++..+.. +-+..+|..+-.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345677999999999998876 67778888888887643 44678999999998764 2256688888888
Q ss_pred HHHcCChh----HHHHHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q psy767 204 YAKHGDMD----SIKTKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGD 279 (902)
Q Consensus 204 ~~~~g~~~----~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~ 279 (902)
|...|.+. .+. +.++.|.+.|+...+. .|+...|..-+..+
T Consensus 85 y~~~g~~~~~~~~~~----------------------------~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~----- 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAK----------------------------HNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----- 129 (145)
T ss_dssp HHHHHHHCCCHHHHH----------------------------HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-----
T ss_pred HHHcccchhhHHHHH----------------------------HhHHHhhhhhhccccc--CCCHHHHHHHHHHH-----
Confidence 87655432 221 2344677777777654 56666555544444
Q ss_pred HHHHHHHHHHhccC
Q psy767 280 MDSVRRLLAQSGSS 293 (902)
Q Consensus 280 ~~~A~~lf~~m~~~ 293 (902)
.+|.+++.+..+.
T Consensus 130 -~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 130 -AKAPQLHAEAYKQ 142 (145)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHH
Confidence 3555666654443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.49 E-value=0.19 Score=43.98 Aligned_cols=102 Identities=8% Similarity=-0.070 Sum_probs=74.1
Q ss_pred HHHCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHH----------cCCHHHHHHHHHHhhhCCCCCCHHHH
Q psy767 93 YLDNEHTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQ----------DGNIEGATKILEFMRDKTFPISEGVF 162 (902)
Q Consensus 93 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~----------~g~~~~A~~l~~~m~~~~~~p~~~~y 162 (902)
|-+.+.+++|...|+...+.. +-+..++..+ -.+|.. .+.+++|...|+...+.+ |-+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~------g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRW------GGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHH------HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHH
Confidence 344566899999999988754 2256666666 555543 355688999999988776 6677899
Q ss_pred HHHHHHHHhCC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q psy767 163 NALIYGHSQAN-----------DMASAEGILTMMSQAGLEPSAQTYTKLMCGY 204 (902)
Q Consensus 163 n~Li~~~~~~g-----------~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~ 204 (902)
+.+-.+|...| .+++|.+.|+...+. .|+..+|..-+..+
T Consensus 79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH
Confidence 99988887655 357888888888875 67777776655554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.32 Score=38.91 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=54.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHccCCC----CCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q psy767 471 DAANHIYHLINKGQIDAAYRIVNTLARSANIN----GEQLPVGGFLVRHMVKTNQPIDKVLAVCHRLTDENLHPR 541 (902)
Q Consensus 471 ~~~~li~~~~k~g~~~~A~~l~~~m~~~~~~~----~~~~~~~n~li~~~~~~g~~~~~A~~l~~~m~~~g~~Pd 541 (902)
+++.+-..+.+.|++++|...|++........ .....+++.+..++.+.|+ +++|+..+++..+. .|+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-~~~A~~~y~~aL~l--~P~ 78 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLEL--DPE 78 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-hHHHHHHHHHHHHh--CcC
Confidence 46778888999999999999999876653211 1234578899999999999 99999999998774 565
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=0.73 Score=36.57 Aligned_cols=69 Identities=10% Similarity=-0.083 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCC-Ccc----cHHHHHHHHHHcCChHHHHHHHHHcccCCCCCCCHHH
Q psy767 346 AQTYTKLMCGYAKHGDMDSIRRLLAQN----GSSL-VNG----DYLDIIHALAVSGHGEYIDEIISKIQPGVGYSADAAN 416 (902)
Q Consensus 346 ~~t~~~Li~~y~~~g~~~~A~~~~~~m----~~~~-~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 416 (902)
...+--+...+.+.|+++.|...|++- ...+ ..+ .++.+..++.+.|++++|.+.+++..+ +.|+...
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~---l~P~~~~ 81 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE---LDPEHQR 81 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH---hCcCCHH
Confidence 334456778899999999999999861 1111 111 277899999999999999999999988 7887764
Q ss_pred H
Q psy767 417 H 417 (902)
Q Consensus 417 ~ 417 (902)
.
T Consensus 82 a 82 (95)
T d1tjca_ 82 A 82 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.90 E-value=0.087 Score=54.44 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||..||.+|.+++++|+||||.+.....+
T Consensus 310 ~mL~~dP~~Rpta~e~L~Hp~f~~~~~~~~ 339 (362)
T d1q8ya_ 310 PMLQLDPRKRADAGGLVNHPWLKDTLGMEE 339 (362)
T ss_dssp GGGCSSTTTCBCHHHHHTCGGGTTCTTCTT
T ss_pred HHCCCChhHCcCHHHHhcCcccCCCCCccc
Confidence 899999999999999999999986654444
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.85 E-value=0.068 Score=53.66 Aligned_cols=30 Identities=37% Similarity=0.597 Sum_probs=27.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVP 880 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+||+.||.+|.+.+|+++||||.++..+.|
T Consensus 265 ~mL~~dP~~R~t~~ell~H~ff~~~~~p~p 294 (298)
T d1gz8a_ 265 QMLHYDPNKRISAKAALAHPFFQDVTKPVP 294 (298)
T ss_dssp HHTCSSTTTSCCHHHHHTSGGGTTCCCCCC
T ss_pred HHccCChhHCcCHHHHhCCHhhccCCCCCC
Confidence 789999999999999999999999987766
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.078 Score=53.19 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCCCc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEVPD 881 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (902)
+||..||-+|.+++++++||||.+.....|.
T Consensus 262 ~~L~~dP~~R~sa~e~L~Hp~f~~~p~p~~~ 292 (299)
T d1ua2a_ 262 GLFLFNPCARITATQALKMKYFSNRPGPTPG 292 (299)
T ss_dssp HHHCSSTTTSCCHHHHHTSGGGTSSSCCCCS
T ss_pred HHccCChhhCcCHHHHhCCHhhCCCCCCCCC
Confidence 8999999999999999999999887766653
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.85 E-value=0.1 Score=52.01 Aligned_cols=27 Identities=33% Similarity=0.717 Sum_probs=25.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYF 877 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+||..||-+|++++++|+||||+.+..
T Consensus 265 ~mL~~dP~~R~sa~e~L~Hp~f~~~~~ 291 (292)
T d1unla_ 265 NLLKCNPVQRISAEEALQHPYFSDFCP 291 (292)
T ss_dssp HHSCSSGGGSCCHHHHTTSGGGSSCSC
T ss_pred HHccCChhHCcCHHHHhcChhhcCCCC
Confidence 789999999999999999999998764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=84.81 E-value=5.5 Score=32.86 Aligned_cols=137 Identities=11% Similarity=0.116 Sum_probs=89.1
Q ss_pred HHcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCChHHHHHHHHHcccCCCCCC--CHHHHHHHHHHcCCHHHHHHHH
Q psy767 357 AKHGDMDSIRRLLAQNGSSLVNGDYLDIIHALAVSGHGEYIDEIISKIQPGVGYSA--DAANHIYHLINKGQIDAAYRIV 434 (902)
Q Consensus 357 ~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p--d~~t~i~~l~~~g~~~~A~~~~ 434 (902)
.-.|.+++..+++.+.........||.+|--....-+-+-..+.++.+-.-..+.| +..+++..+...+...
T Consensus 13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~s------ 86 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLN------ 86 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCC------
T ss_pred HHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchH------
Confidence 34577888888877754443444577777777777777777777777766444555 2223343333333211
Q ss_pred HHHHhccCCCCCcccchhhHHHhhhhcCCCCCccccchHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCCccchHHHHH
Q psy767 435 NTLARSANINGEQLPVGGFLVRHMVKTNQPGVGYSADAAN-HIYHLINKGQIDAAYRIVNTLARSANINGEQLPVGGFLV 513 (902)
Q Consensus 435 ~~m~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-li~~~~k~g~~~~A~~l~~~m~~~~~~~~~~~~~~n~li 513 (902)
.++. .+..+..+|+-+.-.++.+.+.+...++ +...-.+.
T Consensus 87 ------------------------------------e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~---~~~llkia 127 (161)
T d1wy6a1 87 ------------------------------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVS---ASILVAIA 127 (161)
T ss_dssp ------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSC---HHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHH
Confidence 2233 4555778888888888888876654433 34566778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCC
Q psy767 514 RHMVKTNQPIDKVLAVCHRLTDENLH 539 (902)
Q Consensus 514 ~~~~~~g~~~~~A~~l~~~m~~~g~~ 539 (902)
.+|.+-|. ..++-+++.+.-+.|++
T Consensus 128 ~A~kkig~-~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 128 NALRRVGD-ERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHhHH
Confidence 88899998 88999999888888864
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.33 E-value=0.25 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.9
Q ss_pred CCCCCCcchhhhHHHhhcCCCcc
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFN 873 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
+||+.||.+|.+++++++||||.
T Consensus 237 ~~L~~dp~~R~t~~eil~hp~~~ 259 (263)
T d2j4za1 237 RLLKHNPSQRPMLREVLEHPWIT 259 (263)
T ss_dssp HHTCSSGGGSCCHHHHHTCHHHH
T ss_pred HHccCCHhHCcCHHHHHcCcCcC
Confidence 79999999999999999999995
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.21 E-value=1 Score=48.29 Aligned_cols=133 Identities=14% Similarity=-0.055 Sum_probs=78.4
Q ss_pred HCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCC
Q psy767 95 DNEHTFSPTDFLAKLESQGIEP-NRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQAN 173 (902)
Q Consensus 95 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g 173 (902)
..+.++.|+..+..... +.| +...+..+ -..+.+.|+.+.|...+........ ..++..+-..+...|
T Consensus 98 a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~l------g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~ 166 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFN--VDLPCRVKSSQL------GIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRN 166 (497)
T ss_dssp HHHHHHHHHHHHTC---------------------------------------CCHHHHHHH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHC--CChhhHHHHHHh------HHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcc
Confidence 34667788777765543 333 44556666 7778888999999887766543321 256778889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHhcccCCCccchhhHHHHHHHHHh
Q psy767 174 DMASAEGILTMMSQAGLEPS-AQTYTKLMCGYAKHGDMDSIKTKIPSLKPQSELFLCFSFQLTNLLILV 241 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (902)
++++|...|.+..+. .|+ ..+|+.|...+...|+..+|...|.+......+ ...++..+..++.+
T Consensus 167 ~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 167 QTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Confidence 999999999999887 454 579999999999999999999999988876654 34455556666655
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=84.11 E-value=0.13 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYY 876 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+||..||-+|.+++++|+||||.+..
T Consensus 301 ~mL~~dP~~R~ta~e~L~Hp~F~~v~ 326 (328)
T d3bqca1 301 KLLRYDHQSRLTAREAMEHPYFYTVV 326 (328)
T ss_dssp HHSCSSGGGSCCHHHHHTSGGGTTSC
T ss_pred HHccCChhHCcCHHHHhcCcccCCCC
Confidence 79999999999999999999998764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=83.28 E-value=11 Score=31.05 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=89.4
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHH
Q psy767 136 QDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQANDMASAEGILTMMSQA-GLEPSAQTYTKLMCGYAKHGDMDSIK 214 (902)
Q Consensus 136 ~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~ll~a~~~~g~~~~a~ 214 (902)
-.|.+++..+++.+..... +..-||-+|--....-+-+-..++++..-.. .+.|-. -.-.++..+...+...+
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~~se-- 87 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNTLNE-- 87 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTCCCH--
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcchHH--
Confidence 4577777777777765533 3456777776666666666666666655332 111100 11234445555444332
Q ss_pred HHHHhcccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Q psy767 215 TKIPSLKPQSELFLCFSFQLTNLLILVSSDMASAEGILTMMSQAGLEPSAQTYTKLMCGYAKHGDMDSVRRLLAQSGSSL 294 (902)
Q Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~LI~a~~~~g~~~~A~~lf~~m~~~~ 294 (902)
.+......+...|+-+.-.++++.+.+.+ +++....-.+..+|.+.|...++-+++.+.-+.|
T Consensus 88 ----------------~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 88 ----------------HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ----------------HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33445566677888888889988877754 8888888899999999999999999999877776
Q ss_pred CC
Q psy767 295 VN 296 (902)
Q Consensus 295 ~~ 296 (902)
..
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 54
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=82.80 E-value=8.2 Score=32.06 Aligned_cols=106 Identities=8% Similarity=-0.113 Sum_probs=59.2
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----CC
Q psy767 98 HTFSPTDFLAKLESQGIEPNRVTYQQLISNSKLISKYCQDGNIEGATKILEFMRDKTFPISEGVFNALIYGHSQ----AN 173 (902)
Q Consensus 98 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~yn~Li~~~~~----~g 173 (902)
++++|.++|++..+.|.. ..+..+ . .....+.++|.+.++...+.|. ...+..|-..|.. ..
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l------~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~ 73 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSL------V--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKK 73 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHH------H--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhh------c--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccch
Confidence 466788888877776622 222223 2 2334577788888877777763 3444445555543 34
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHhc
Q psy767 174 DMASAEGILTMMSQAGLEPSAQTYTKLMCGYAK----HGDMDSIKTKIPSL 220 (902)
Q Consensus 174 ~~~~A~~l~~~M~~~g~~pd~~ty~~ll~a~~~----~g~~~~a~~l~~~~ 220 (902)
+.++|+++|+...+.| +......|-..|.. ..+..+|.++|+..
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A 121 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence 5777888888777765 33344444444433 23444444444443
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.00 E-value=0.16 Score=52.16 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFE 878 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+||+.||.+|.+++++++||||+.++..
T Consensus 285 ~mL~~dP~~R~ta~e~L~Hp~f~~~~~~ 312 (350)
T d1q5ka_ 285 RLLEYTPTARLTPLEACAHSFFDELRDP 312 (350)
T ss_dssp HHSCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred HHccCChhHCcCHHHHhcCHhhccccCC
Confidence 7999999999999999999999988764
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.24 E-value=0.19 Score=51.36 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCCCCCcchhhhHHHhhcCCCccCCCCCC
Q psy767 851 RCLDKDPLRRWSCDQLLRHPYFNGYYFEV 879 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+||..||.+|.+++++++||||.++....
T Consensus 283 ~mL~~dP~~R~ta~eiL~Hp~f~~~~~~~ 311 (346)
T d1cm8a_ 283 KMLVLDAEQRVTAGEALAHPYFESLHDTE 311 (346)
T ss_dssp HHSCSSTTTSCCHHHHHHSGGGTTTC---
T ss_pred HHCcCChhHCcCHHHHhcChhhCcCCCcc
Confidence 89999999999999999999999887543
|