Psyllid ID: psy7694

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
MLGTNLRASILFINMGVRLFRAQQRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVGLHINCEENPISNDHNANSASNSVQEIILGTYIMKSNIYQDENEVQ
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEccccccEEEEEEcccccccccccccccccEEEEEEccEEEEEEcccccccccccEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHccccccEEHHHHHHHHcccccccccccccccccccccHHHHHHHHEcccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccEEEcccccEcEEEccccccEEEEEEEEccccccEEEEEccccEEEEEEEccEEEEEcccccccccccEEEcccccEEEEEcccccccEEcccccccccccccccccccccccccccccccEEEEEEccccccccccHHHccccccccccccccccccHHHHHccccccccHEEEEHHHHcEEccccccccccccccccccHHHHHHHHHHHHHccccccccccc
MLGTNLRASILFINMGVRLFRAQQRIQNAhllsrpitqqdidtinqsttdnspesrIYMSRLNQAIHEkqngggekqngdqdggrkffkqdgrplnmnqanidfrlenerdRYVLTVHVYRYLdtslldvdvqpnyvRVTIKNKVLQLAlddtvltdksyaQRSEATRHLVVTmpkesgravlgqnetvkktspkkdtpnqksnpdqppvsnqreyLEIGKsihyenmdfsqiyanselpaleLNSWIKQLDWltswarpsgnYLALVFLVGLHinceenpisndhnansasnsVQEIILGTYIMKsniyqdenevq
mlgtnlraSILFINMGVRLFRAQQRIQNAHLlsrpitqqdidtinqsttdnspesRIYMSRLNQAIHEKqngggekqngdqDGGRKffkqdgrplnmnqanidfrlenerdrYVLTVHVYRYLdtslldvdvqpnYVRVTiknkvlqlalddtvltdksyaqrseatrhlvvtmpkesgravlgqnetvkktspkkdtpnqksnpdqppvsnqREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVGLHINCEENPISNDHNANSASNSVQEIILGTYIMKSNIYQDENEVQ
MLGTNLRASILFINMGVRLFRAQQRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVGLHINCEENPIsndhnansasnsVQEIILGTYIMKSNIYQDENEVQ
*****LRASILFINMGVRLFRAQQRIQNAHLLSR*****************************************************************ANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSY*******************************************************YLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVGLHINCEE***************VQEIILGTYIMKSNIY*******
*****LR*****************************************TDNSPESRI********************************QDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLT********EATRHLVVTMPKES******************************************KSIHYENMDF****************WIKQLDWLTSWARPSGNYLALVFLVGLHINCEENP************SVQEIILGTYIMKSNIY*******
MLGTNLRASILFINMGVRLFRAQQRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQ************GGRKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQN*************************NQREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVGLHINCEENPISNDHNANSASNSVQEIILGTYIMKSNIYQDENEVQ
*LGTNLRASILFINMGVRLFRAQQRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEK************DGGRKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVL****************************NQREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVGLHINCEENPI********ASNSVQEIILGTYIMKSNIY*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGTNLRASILFINMGVRLFRAQQRIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVGLHINCEENPISNDHNANSASNSVQEIILGTYIMKSNIYQDENEVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query317 2.2.26 [Sep-21-2011]
Q1RMR5472 Protein TILB homolog OS=B yes N/A 0.517 0.347 0.427 3e-25
Q9VR52395 Protein TILB OS=Drosophil yes N/A 0.580 0.465 0.350 2e-22
Q86X45466 Protein TILB homolog OS=H yes N/A 0.425 0.289 0.421 4e-22
Q4R3F0466 Protein TILB homolog OS=M N/A N/A 0.413 0.281 0.421 4e-21
B3DH20440 Protein TILB homolog OS=D yes N/A 0.410 0.295 0.441 5e-21
O88978473 Protein TILB homolog OS=M yes N/A 0.526 0.353 0.371 7e-21
Q28FY0470 Protein TILB homolog OS=X yes N/A 0.388 0.261 0.445 1e-20
Q9NJE9383 Protein TILB homolog OS=T N/A N/A 0.277 0.229 0.373 2e-07
>sp|Q1RMR5|TILB_BOVIN Protein TILB homolog OS=Bos taurus GN=LRRC6 PE=2 SV=1 Back     alignment and function desciption
 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 101/173 (58%), Gaps = 9/173 (5%)

Query: 52  SPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNMNQANIDFRLENE-- 109
           +PESR+   R  +     Q    EK+   +   R    +DGR LN+N+  +DF L+++  
Sbjct: 261 TPESRLETLRHMEKQRRDQERLSEKKKKVK-PPRMLVTEDGRALNVNEPKLDFTLKDDEK 319

Query: 110 RDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRH 169
           R++ VL + VYRY+DTSL+DVDVQP YVRV +K K  QL L   V  D S+A+RS+ T H
Sbjct: 320 RNQIVLDLAVYRYMDTSLIDVDVQPTYVRVMVKGKPFQLILPAEVKPDSSFAKRSQTTGH 379

Query: 170 LVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQREYLEIGKS 222
           LVV MPK  G  ++G   T K   P K TP+  S+ +Q   S Q E LE+  S
Sbjct: 380 LVVCMPK-VGEVIIGCQRTSK---PVKSTPD--SSKEQTSKSQQMERLEVDPS 426
Plays a role in motility of cilia.
Bos taurus (taxid: 9913)
>sp|Q9VR52|TILB_DROME Protein TILB OS=Drosophila melanogaster GN=tilB PE=1 SV=1 Back     alignment and function description
>sp|Q86X45|TILB_HUMAN Protein TILB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3 Back     alignment and function description
>sp|Q4R3F0|TILB_MACFA Protein TILB homolog OS=Macaca fascicularis GN=LRCC6 PE=2 SV=1 Back     alignment and function description
>sp|B3DH20|TILB_DANRE Protein TILB homolog OS=Danio rerio GN=lrrc6 PE=1 SV=1 Back     alignment and function description
>sp|O88978|TILB_MOUSE Protein TILB homolog OS=Mus musculus GN=Lrrc6 PE=1 SV=1 Back     alignment and function description
>sp|Q28FY0|TILB_XENTR Protein TILB homolog OS=Xenopus tropicalis GN=lrrc6 PE=2 SV=1 Back     alignment and function description
>sp|Q9NJE9|TILB_TRYBB Protein TILB homolog OS=Trypanosoma brucei brucei GN=lrrc6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
91079072386 PREDICTED: similar to testis specific le 0.618 0.507 0.372 7e-31
328724940412 PREDICTED: leucine-rich repeat-containin 0.429 0.330 0.485 2e-27
58392865404 AGAP008927-PA [Anopheles gambiae str. PE 0.492 0.386 0.403 3e-27
156405186 458 predicted protein [Nematostella vectensi 0.583 0.403 0.391 4e-27
357611652 428 hypothetical protein KGM_02041 [Danaus p 0.552 0.408 0.421 3e-26
312384660 478 hypothetical protein AND_01792 [Anophele 0.621 0.412 0.322 1e-24
157107180402 testis specific leucine rich repeat prot 0.526 0.415 0.359 8e-24
170031672397 leucine-rich repeat-containing protein 6 0.529 0.423 0.363 1e-23
115495711 472 protein TILB homolog [Bos taurus] gi|122 0.517 0.347 0.427 2e-23
426235436 472 PREDICTED: protein TILB homolog [Ovis ar 0.517 0.347 0.427 2e-23
>gi|91079072|ref|XP_975217.1| PREDICTED: similar to testis specific leucine rich repeat protein [Tribolium castaneum] gi|270004202|gb|EFA00650.1| hypothetical protein TcasGA2_TC003526 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 40/236 (16%)

Query: 19  LFRAQQ--RIQNAHLLSRPITQQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGGGEK 76
           LFR +Q  RI++ +    P    D +   +ST++N PE+R+ +SR       +++ G +K
Sbjct: 178 LFRKEQKKRIEDGY---DPTI--DDEEFWKSTSENCPETRVEISR-----RTRKSKGLDK 227

Query: 77  QNGDQDGGRKFFKQDGRPLNMNQANIDFRLENER-DRYVLTVHVYRYLDTSLLDVDVQPN 135
               +    + F ++GRPLNMNQA +DF+  +E  +++VL + VY+YLDT+L+++D+QP 
Sbjct: 228 GEITEKKQVRLFTKEGRPLNMNQAKLDFKFNDENPEKFVLDLAVYKYLDTNLIEIDLQPI 287

Query: 136 YVRVTIKNKVLQLALDDTVLTDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPK 195
           Y R+ IK KV Q+   + +LTDKS A+RS+ T HLV+ +PK + + +  + +TVKKTS  
Sbjct: 288 YARILIKGKVFQIVFPEEILTDKSTAKRSQTTGHLVLDLPKANYKPL--KRKTVKKTS-- 343

Query: 196 KDTPNQKSNPDQPPVSNQREYLEIGKSIHYENMDFSQIYAN--------SELPALE 243
                       PP  NQ+E LE+     Y  MDFS+I  N         E+P LE
Sbjct: 344 ------------PPKENQKEVLEVP---EYNEMDFSKIVENYNKKCSEHPEVPPLE 384

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328724940|ref|XP_001951541.2| PREDICTED: leucine-rich repeat-containing protein 6-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|58392865|ref|XP_319679.2| AGAP008927-PA [Anopheles gambiae str. PEST] gi|55235237|gb|EAA14831.3| AGAP008927-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|156405186|ref|XP_001640613.1| predicted protein [Nematostella vectensis] gi|156227748|gb|EDO48550.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|357611652|gb|EHJ67589.1| hypothetical protein KGM_02041 [Danaus plexippus] Back     alignment and taxonomy information
>gi|312384660|gb|EFR29335.1| hypothetical protein AND_01792 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157107180|ref|XP_001649660.1| testis specific leucine rich repeat protein [Aedes aegypti] gi|108879641|gb|EAT43866.1| AAEL004711-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170031672|ref|XP_001843708.1| leucine-rich repeat-containing protein 6 [Culex quinquefasciatus] gi|167870879|gb|EDS34262.1| leucine-rich repeat-containing protein 6 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|115495711|ref|NP_001069372.1| protein TILB homolog [Bos taurus] gi|122143799|sp|Q1RMR5.1|TILB_BOVIN RecName: Full=Protein TILB homolog; AltName: Full=Leucine-rich repeat-containing protein 6; AltName: Full=Leucine-rich testis-specific protein; AltName: Full=Testis-specific leucine-rich repeat protein gi|92097512|gb|AAI14760.1| Leucine rich repeat containing 6 [Bos taurus] gi|296480709|tpg|DAA22824.1| TPA: leucine rich repeat containing 6 [Bos taurus] Back     alignment and taxonomy information
>gi|426235436|ref|XP_004011686.1| PREDICTED: protein TILB homolog [Ovis aries] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
UNIPROTKB|Q1RMR5472 LRRC6 "Protein TILB homolog" [ 0.558 0.375 0.406 3e-26
UNIPROTKB|F1RRU0472 LRRC6 "Uncharacterized protein 0.529 0.355 0.441 1.1e-25
UNIPROTKB|Q86X45466 LRRC6 "Protein TILB homolog" [ 0.526 0.358 0.393 2.4e-24
MGI|MGI:1859553473 Lrrc6 "leucine rich repeat con 0.526 0.353 0.394 1.2e-23
FB|FBgn0014395395 tilB "touch insensitive larva 0.656 0.526 0.333 8.7e-23
UNIPROTKB|F1NUJ0476 LRRC6 "Uncharacterized protein 0.580 0.386 0.357 1.3e-22
ZFIN|ZDB-GENE-040827-2440 lrrc6 "leucine rich repeat con 0.504 0.363 0.394 1.5e-22
UNIPROTKB|Q9NJE9383 lrrc6 "Protein TILB homolog" [ 0.264 0.219 0.390 3.3e-07
UNIPROTKB|Q1RMR5 LRRC6 "Protein TILB homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 299 (110.3 bits), Expect = 3.0e-26, P = 3.0e-26
 Identities = 76/187 (40%), Positives = 108/187 (57%)

Query:    38 QQDIDTINQSTTDNSPESRIYMSRLNQAIHEKQNGGGEKQNGDQDGGRKFFKQDGRPLNM 97
             + D++  N+ +   +PESR+   R  +     Q    EK+   +   R    +DGR LN+
Sbjct:   248 EDDLEFWNKPSL-YTPESRLETLRHMEKQRRDQERLSEKKKKVKPP-RMLVTEDGRALNV 305

Query:    98 NQANIDFRLENE--RDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKNKVLQLALDDTVL 155
             N+  +DF L+++  R++ VL + VYRY+DTSL+DVDVQP YVRV +K K  QL L   V 
Sbjct:   306 NEPKLDFTLKDDEKRNQIVLDLAVYRYMDTSLIDVDVQPTYVRVMVKGKPFQLILPAEVK 365

Query:   156 TDKSYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQKSNPDQPPVSNQRE 215
              D S+A+RS+ T HLVV MPK  G  ++G   T K   P K TP+  S+ +Q   S Q E
Sbjct:   366 PDSSFAKRSQTTGHLVVCMPKV-GEVIIGCQRTSK---PVKSTPD--SSKEQTSKSQQME 419

Query:   216 YLEIGKS 222
              LE+  S
Sbjct:   420 RLEVDPS 426
GO:0005929 "cilium" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0008584 "male gonad development" evidence=IEA
GO:0000240 "diplotene" evidence=IEA
GO:0000239 "pachytene" evidence=IEA
UNIPROTKB|F1RRU0 LRRC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q86X45 LRRC6 "Protein TILB homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1859553 Lrrc6 "leucine rich repeat containing 6 (testis)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0014395 tilB "touch insensitive larva B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUJ0 LRRC6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040827-2 lrrc6 "leucine rich repeat containing 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NJE9 lrrc6 "Protein TILB homolog" [Trypanosoma brucei brucei (taxid:5702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.06
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 98.03
cd0646384 p23_like Proteins containing this p23_like domain 97.97
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 97.83
cd0029880 ACD_sHsps_p23-like This domain family includes the 97.8
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.22
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 96.99
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 96.88
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 96.73
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 96.69
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 96.64
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 96.64
cd0646892 p23_CacyBP p23_like domain found in proteins simil 96.55
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 96.26
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 96.02
COG0071146 IbpA Molecular chaperone (small heat shock protein 96.0
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 95.73
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 95.67
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 95.5
cd0648887 p23_melusin_like p23_like domain similar to the C- 94.9
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 94.72
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 93.5
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 93.04
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 92.75
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 92.14
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 91.75
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 91.6
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 90.91
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 90.9
PRK10743137 heat shock protein IbpA; Provisional 90.86
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 90.68
PRK11597142 heat shock chaperone IbpB; Provisional 88.07
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 87.39
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 83.25
KOG0531|consensus414 81.52
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information 
Probab=98.06  E-value=3.1e-05  Score=56.61  Aligned_cols=72  Identities=19%  Similarity=0.215  Sum_probs=60.7

Q ss_pred             ceeeccCCCeEEEEeec-cccccccceeecccCcEEEEEEc-C----eeeeeecCccccCCCcceeeeeccceEEEEeec
Q psy7694         103 DFRLENERDRYVLTVHV-YRYLDTSLLDVDVQPNYVRVTIK-N----KVLQLALDDTVLTDKSYAQRSEATRHLVVTMPK  176 (317)
Q Consensus       103 ~F~L~Ee~~~ivLdl~V-yKyLDTSLIDVDVQPtYVRV~IK-G----KlfQL~LpeEVkpD~S~aqRSqTTGhLvItMPK  176 (317)
                      .|.+.+..+.+.|.|.+ +..++-+-|+|++.+++++|.++ |    -.+.+.|..+|.||.|+......  .|.|+|.|
T Consensus         2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~--~i~i~L~K   79 (79)
T PF04969_consen    2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDN--KIEITLKK   79 (79)
T ss_dssp             SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETT--EEEEEEEB
T ss_pred             CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECC--EEEEEEEC
Confidence            36677778899999999 77789999999999999999998 4    37889999999999998866554  99999987

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>KOG0531|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 36/181 (19%)

Query: 101 NIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQ--PNYVRVTIKNKVLQLALDDTVLTDK 158
           ++DF     + +Y   + V+   D  + + D +   +  +  +  + +     D ++  K
Sbjct: 6   HMDFETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSK 58

Query: 159 SYAQRSEATRHLVVTMPKESGRAVLGQNETVKKTSPKKDTPNQK------SNPDQPPVSN 212
                   T  L  T+  +       Q E V+K   +    N K          + P   
Sbjct: 59  D---AVSGTLRLFWTLLSK-------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 213 QREYLEIGKSIHYENMDFSQIYANSELPALELNSWIKQLDWLTSWARPSGNYLALVFLVG 272
            R Y+E    ++ +N  F++   +   P L+L   + +L       RP+ N    V + G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-------RPAKN----VLIDG 157

Query: 273 L 273
           +
Sbjct: 158 V 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.12
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.01
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.79
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.55
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 97.46
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.39
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.33
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 96.95
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 96.93
4fei_A102 Heat shock protein-related protein; stress respons 96.9
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 96.82
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 96.77
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 96.62
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 96.5
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 96.45
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 96.34
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 96.2
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 96.16
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 96.07
1gme_A151 Heat shock protein 16.9B; small heat shock protein 95.98
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 95.16
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 95.03
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 94.58
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 93.49
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 91.02
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 90.91
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
Probab=98.12  E-value=9.2e-06  Score=61.38  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=66.9

Q ss_pred             CCcceeeccCCCeEEEEeeccccccccceeecccCcEEEEEEcC---e--eeeeecCccccCCCcceeeeeccceEEEEe
Q psy7694         100 ANIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIKN---K--VLQLALDDTVLTDKSYAQRSEATRHLVVTM  174 (317)
Q Consensus       100 gK~~F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IKG---K--lfQL~LpeEVkpD~S~aqRSqTTGhLvItM  174 (317)
                      |+..|.+.+..+.+.|.|.++. ++..-+.|+++++.+.|.++|   +  .|.+.|+.+|.||.|++.-.  .|.|.|+|
T Consensus         1 ~~~~~~W~Qt~~~V~v~i~~~~-v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~--~~~l~i~L   77 (92)
T 2xcm_C            1 AKYRHEYYQKPEEVVVTVFAKG-IPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVL--STKIEICL   77 (92)
T ss_dssp             CCSEEEEEEETTEEEEEEECCS-CCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEEC--SSCEEEEE
T ss_pred             CCccccEEeCCCEEEEEEEECC-CChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEE--CCEEEEEE
Confidence            4677888888889999999875 567889999999999999985   3  68899999999999988765  58899999


Q ss_pred             eccCcc
Q psy7694         175 PKESGR  180 (317)
Q Consensus       175 PKv~~~  180 (317)
                      +|..+.
T Consensus        78 ~K~~~~   83 (92)
T 2xcm_C           78 AKADII   83 (92)
T ss_dssp             EBSSSC
T ss_pred             EcCCCC
Confidence            998753
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 97.36
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 96.87
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 96.11
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 95.62
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 95.44
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 94.59
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 89.83
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00034  Score=51.40  Aligned_cols=77  Identities=13%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             CcceeeccCCCeEEEEeeccccccccceeecccCcEEEEEEc---Ce--eeeeecCccccCCCcceeeeeccceEEEEee
Q psy7694         101 NIDFRLENERDRYVLTVHVYRYLDTSLLDVDVQPNYVRVTIK---NK--VLQLALDDTVLTDKSYAQRSEATRHLVVTMP  175 (317)
Q Consensus       101 K~~F~L~Ee~~~ivLdl~VyKyLDTSLIDVDVQPtYVRV~IK---GK--lfQL~LpeEVkpD~S~aqRSqTTGhLvItMP  175 (317)
                      |+.|.+...++.+.+.|.++ -++..-|.|++.++.++|.++   |+  .|.+.|-.+|.||.|+..=  +.+.|.|+|.
T Consensus         2 k~ry~W~Qt~~~V~i~i~~~-~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~--~~~kiei~L~   78 (92)
T d1rl1a_           2 KIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKV--LSTKIEIKLK   78 (92)
T ss_dssp             CCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEE--CSSSEEEEEE
T ss_pred             CCceeEEeCCCEEEEEEEeC-CCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEE--eCCEEEEEEE
Confidence            67888988889999999997 467788999999999999998   44  5667788999999988764  4578999999


Q ss_pred             ccCcc
Q psy7694         176 KESGR  180 (317)
Q Consensus       176 Kv~~~  180 (317)
                      |..+.
T Consensus        79 K~~~~   83 (92)
T d1rl1a_          79 KPEAV   83 (92)
T ss_dssp             CSSCC
T ss_pred             ECCCC
Confidence            98643
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure