Psyllid ID: psy7728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MLSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccEEEEccccccEEEEEEcccEEEEEEccccccccEEEEEEccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccEEEEEEcccccEEEEEEcccEEEEEEEcccccccEEEEEcccEEEEc
Coil and Loop (DISEMBL)
mlsrygprtrlyqfappssieivghpsnskieireNQEITLECLVKNAKPAAKIVWYRGNTELKL
Flexible Loop (DISEMBL)
mlsrygprtrlyqfappssieivgHPSNSKIEIRENQEITLEClvknakpaakivwyrgntelkl
Low Complexity Region (SEG)
MLSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL
Disordered region (IsUnstruct)
*******************************EIRENQEITLECLVKNAKPAAKIVWYRG******
Disordered Region (DISOPRED)
**********LYQFAPPSSIEIVGHPSN****IRENQEITLECLVKNAKPAAKIVWYRGNTEL**
Disordered Region (DISEMBL)
MLSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL
Disordered Region (DISPRO)
*****GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
270004051	1230	hypothetical protein TcasGA2_TC003361 [T	0.815	0.043	0.735	3e-15
189235128	1303	PREDICTED: similar to sticks and stones	0.861	0.042	0.696	8e-15
336319049	112	sticks and stones [Biston betularia]	0.830	0.482	0.648	3e-14
195426856	1552	GK20677 [Drosophila willistoni] gi|19415	0.846	0.035	0.654	4e-14
242005444	1230	Nephrin precursor, putative [Pediculus h	0.846	0.044	0.636	9e-14
195400612	1485	GJ19783 [Drosophila virilis] gi|19415626	0.846	0.037	0.636	1e-13
158289819	1195	AGAP010742-PA [Anopheles gambiae str. PE	0.846	0.046	0.636	2e-13
195122434	1640	GI18925 [Drosophila mojavensis] gi|19391	0.846	0.033	0.636	2e-13
194752975	1471	GF12383 [Drosophila ananassae] gi|190620	0.846	0.037	0.618	3e-13
8572742	1482	SNS [Drosophila melanogaster]	0.846	0.037	0.618	3e-13

>gi|270004051|gb|EFA00499.1| hypothetical protein TcasGA2_TC003361 [Tribolium castaneum]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 44/53 (83%)

Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
          Q APPSS+EI+ H  NSKIEI+ENQE  LEC V+NAKPAAKIVWYRGN EL +
Sbjct: 34 QIAPPSSVEILDHRHNSKIEIKENQEFHLECRVRNAKPAAKIVWYRGNVELNI 86

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235128|ref|XP_972469.2| PREDICTED: similar to sticks and stones CG33141-PA [Tribolium castaneum]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 45/56 (80%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
           RL   +PPSS+EI+ H  NSKIEI+ENQE  LEC V+NAKPAAKIVWYRGN EL +
Sbjct: 108 RLNVISPPSSVEILDHRHNSKIEIKENQEFHLECRVRNAKPAAKIVWYRGNVELNI 163

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|336319049|gb|ADN84940.2| sticks and stones [Biston betularia]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 44/54 (81%)

Query: 11  LYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           L   +PP+ +EI  HP+NSKIE++E  ++ LECLVKNAKPAAKI+WYRGN ELK
Sbjct: 56  LTVISPPNVVEITNHPANSKIELKEGDDVALECLVKNAKPAAKIIWYRGNVELK 109

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195426856|ref|XP_002061507.1| GK20677 [Drosophila willistoni] gi|194157592|gb|EDW72493.1| GK20677 [Drosophila willistoni]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +L   +PPSSIEI G+  NSK+E+RENQ++ L+C+V NAKPAA+IVWYRGNTE K
Sbjct: 156 KLTVISPPSSIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYRGNTEYK 210

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005444|ref|XP_002423575.1| Nephrin precursor, putative [Pediculus humanus corporis] gi|212506723|gb|EEB10837.1| Nephrin precursor, putative [Pediculus humanus corporis]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           RL   APPSSIEI+ H S  KI+I+EN+E+ +ECLVKN+KP AK++WYRG+ ELK
Sbjct: 71  RLTVIAPPSSIEIINHSSKDKIQIKENEELEIECLVKNSKPPAKVIWYRGDIELK 125

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400612|ref|XP_002058910.1| GJ19783 [Drosophila virilis] gi|194156261|gb|EDW71445.1| GJ19783 [Drosophila virilis]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +L   +PPSSIEI G+  NSK+E+RENQ++TL+C+V NAKP A+IVWYRGN E K
Sbjct: 163 KLTVISPPSSIEIKGYSHNSKVEVRENQDLTLKCIVANAKPEAQIVWYRGNVEYK 217

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158289819|ref|XP_311455.4| AGAP010742-PA [Anopheles gambiae str. PEST] gi|157018511|gb|EAA07064.5| AGAP010742-PA [Anopheles gambiae str. PEST]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           RL   +PPSSIEI GH  N+K+E+RE Q++TL C+V NAKP A+IVWYRG TE K
Sbjct: 103 RLTVISPPSSIEIQGHSRNAKVEVREGQDLTLTCVVSNAKPVAQIVWYRGKTEYK 157

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122434|ref|XP_002005716.1| GI18925 [Drosophila mojavensis] gi|193910784|gb|EDW09651.1| GI18925 [Drosophila mojavensis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +L   +PPSSIEI G+  NSK+E+RENQ++TL C+V NAKP A+IVWYRGN E K
Sbjct: 303 KLTVISPPSSIEIKGYSHNSKVEVRENQDLTLTCIVANAKPEAQIVWYRGNVEYK 357

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194752975|ref|XP_001958794.1| GF12383 [Drosophila ananassae] gi|190620092|gb|EDV35616.1| GF12383 [Drosophila ananassae]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +L   +PP+SIEI G+  NSK+E+RENQ++ L+C+V NAKPAA+IVWYRGN E K
Sbjct: 165 KLTVISPPASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYRGNVEYK 219

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|8572742|gb|AAF77184.1| SNS [Drosophila melanogaster]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +L   +PP+SIEI G+  NSK+E+RENQ++ L+C+V NAKPAA+IVWYRGN E K
Sbjct: 169 KLTVISPPASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYRGNVEYK 223

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
FB|FBgn0024189	1542	sns "sticks and stones" [Droso	0.846	0.035	0.618	1.6e-13
FB|FBgn0029082	1235	hbs "hibris" [Drosophila melan	0.692	0.036	0.511	9e-08
UNIPROTKB|F5H125	182	CADM1 "Cell adhesion molecule	0.846	0.302	0.380	0.00013
UNIPROTKB|H0YG94	189	CADM1 "Cell adhesion molecule	0.846	0.291	0.380	0.00015
UNIPROTKB|J9NWQ3	299	CADM4 "Uncharacterized protein	0.769	0.167	0.407	0.00015
UNIPROTKB|Q8NFZ8	388	CADM4 "Cell adhesion molecule	0.723	0.121	0.372	0.00049
MGI|MGI:2449088	388	Cadm4 "cell adhesion molecule	0.723	0.121	0.372	0.00063
RGD|1304722	388	Cadm4 "cell adhesion molecule	0.723	0.121	0.372	0.00063
UNIPROTKB|Q1WIM1	388	Cadm4 "Cell adhesion molecule	0.723	0.121	0.372	0.00063
UNIPROTKB|H0YGA7	413	CADM1 "Cell adhesion molecule	0.846	0.133	0.380	0.00069

FB|FBgn0024189 sns "sticks and stones" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:    10 RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
             +L   +PP+SIEI G+  NSK+E+RENQ++ L+C+V NAKPAA+IVWYRGN E K
Sbjct:   167 KLTVISPPASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYRGNVEYK 221

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007520 "myoblast fusion" evidence=IMP;TAS

GO:0007523 "larval visceral muscle development" evidence=IMP

GO:0007157 "heterophilic cell-cell adhesion" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0036059 "nephrocyte diaphragm assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005917 "nephrocyte diaphragm" evidence=IDA

GO:0097206 "nephrocyte filtration" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IGI

GO:0061321 "garland nephrocyte differentiation" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007286 "spermatid development" evidence=IMP

FB|FBgn0029082 hbs "hibris" [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 23/45 (51%), Positives = 34/45 (75%)

Query:    15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG 59
             A PSSI I G+  N+++E+ E Q +TL C+ +NA PAA+IVW++G
Sbjct:   139 AAPSSIVIEGYARNARVEVEERQNLTLHCIAENANPAAEIVWFQG 183

GO:0005886 "plasma membrane" evidence=ISS

GO:0061330 "Malpighian tubule stellate cell differentiation" evidence=IEP;IMP

GO:0016202 "regulation of striated muscle tissue development" evidence=IGI;IMP

GO:0007520 "myoblast fusion" evidence=TAS

GO:0007156 "homophilic cell adhesion" evidence=IGI

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007220 "Notch receptor processing" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP

GO:0070765 "gamma-secretase complex" evidence=IPI

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

UNIPROTKB|F5H125 CADM1 "Cell adhesion molecule 1" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:    10 RLYQFAPPSS---IEIVGHPSNSKIEIR-----ENQEITLECLVKNAKPAAKIVWYRGNT 61
             +LY   P  S   I ++  P N  I+I+     E +EI + C    +KPA  I W++GNT
Sbjct:    92 QLYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNT 151

Query:    62 ELK 64
             ELK
Sbjct:   152 ELK 154

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0YG94 CADM1 "Cell adhesion molecule 1" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 0.00015, P = 0.00015
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:    10 RLYQFAPPSS---IEIVGHPSNSKIEIR-----ENQEITLECLVKNAKPAAKIVWYRGNT 61
             +LY   P  S   I ++  P N  I+I+     E +EI + C    +KPA  I W++GNT
Sbjct:   109 QLYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNT 168

Query:    62 ELK 64
             ELK
Sbjct:   169 ELK 171

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9NWQ3 CADM4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query:    15 APPSSIEIVGHPSNSKIEIRENQ----EITLECLVKNAKPAAKIVWYRGNTELK 64
             APP        P N  +E+RE      E+ L CLV  ++PAA + WYR   ELK
Sbjct:    24 APPPLSPYAVAPENPVVEVREQAVEGGEVELSCLVPRSRPAAVLRWYRDRKELK 77

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8NFZ8 CADM4 "Cell adhesion molecule 4" [Homo sapiens (taxid:9606)]

 Score = 95 (38.5 bits), Expect = 0.00049, P = 0.00049
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query:    18 SSIEIVGHPSNSKIEIRENQ----EITLECLVKNAKPAAKIVWYRGNTELK 64
             +++ ++  P N  +E+RE      E+ L CLV  ++PAA + WYR   ELK
Sbjct:   116 ATLTVLVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELK 166

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2449088 Cadm4 "cell adhesion molecule 4" [Mus musculus (taxid:10090)]

 Score = 94 (38.1 bits), Expect = 0.00063, P = 0.00063
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query:    18 SSIEIVGHPSNSKIEIRENQ----EITLECLVKNAKPAAKIVWYRGNTELK 64
             +++ ++  P N  +E+RE      E+ L CLV  ++PAA + WYR   ELK
Sbjct:   116 ATLTVLVAPENPVVEVREQAVEGGEVELSCLVPRSRPAAVLRWYRDRKELK 166

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1304722 Cadm4 "cell adhesion molecule 4" [Rattus norvegicus (taxid:10116)]

 Score = 94 (38.1 bits), Expect = 0.00063, P = 0.00063
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query:    18 SSIEIVGHPSNSKIEIRENQ----EITLECLVKNAKPAAKIVWYRGNTELK 64
             +++ ++  P N  +E+RE      E+ L CLV  ++PAA + WYR   ELK
Sbjct:   116 ATLTVLVAPENPVVEVREQAVEGGEVELSCLVPRSRPAAVLRWYRDRKELK 166

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q1WIM1 Cadm4 "Cell adhesion molecule 4" [Rattus norvegicus (taxid:10116)]

 Score = 94 (38.1 bits), Expect = 0.00063, P = 0.00063
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query:    18 SSIEIVGHPSNSKIEIRENQ----EITLECLVKNAKPAAKIVWYRGNTELK 64
             +++ ++  P N  +E+RE      E+ L CLV  ++PAA + WYR   ELK
Sbjct:   116 ATLTVLVAPENPVVEVREQAVEGGEVELSCLVPRSRPAAVLRWYRDRKELK 166

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0YGA7 CADM1 "Cell adhesion molecule 1" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 0.00069, P = 0.00069
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query:    10 RLYQFAPPSS---IEIVGHPSNSKIEIR-----ENQEITLECLVKNAKPAAKIVWYRGNT 61
             +LY   P  S   I ++  P N  I+I+     E +EI + C    +KPA  I W++GNT
Sbjct:   124 QLYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNT 183

Query:    62 ELK 64
             ELK
Sbjct:   184 ELK 186

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	65
cd05761	82	cd05761, Ig2_Necl-1-4_like, Second immunoglobulin	1e-07
cd07705	83	cd07705, Ig2_Necl-1, Second immunoglobulin (Ig)-li	3e-05
pfam08205	89	pfam08205, C2-set_2, CD80-like C2-set immunoglobul	2e-04
cd05883	82	cd05883, Ig2_Necl-2, Second immunoglobulin (Ig)-li	2e-04
cd05755	100	cd05755, Ig2_ICAM-1_like, Second immunoglobulin (I	4e-04
cd05885	80	cd05885, Ig2_Necl-4, Second immunoglobulin (Ig)-li	0.002
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	0.002
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.002

>gnl|CDD|143238 cd05761, Ig2_Necl-1-4_like, Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

 Score = 43.5 bits (103), Expect = 1e-07
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 38 EITLECLVKNAKPAAKIVWYRGNTELK 64
          E+ L C    +KPAA I W++G+ ELK
Sbjct: 1  EVELTCTSSGSKPAATIRWFKGDKELK 27

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. Length = 82

>gnl|CDD|143329 cd07705, Ig2_Necl-1, Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

 Score = 37.3 bits (86), Expect = 3e-05
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 40 TLECLVKNAKPAAKIVWYRGNTELK 64
           L C    +KPAA I W +G+ EL+
Sbjct: 3  KLRCTSSGSKPAANIKWRKGDQELE 27

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. Length = 83

>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 35 ENQEITLECLVKNAKPAAKIVWYRGNTEL 63
          EN E+   C     KPA +I WY    EL
Sbjct: 13 ENLEVVATCSSAGGKPAPRITWYLDGREL 41

These domains belong to the immunoglobulin superfamily. Length = 89

>gnl|CDD|143291 cd05883, Ig2_Necl-2, Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

 Score = 35.3 bits (81), Expect = 2e-04
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 38 EITLECLVKNAKPAAKIVWYRGNTELK 64
          EI L C    +KPAA I W++GN EL 
Sbjct: 1  EIELNCTAMASKPAATIRWFKGNKELT 27

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. Length = 82

>gnl|CDD|143232 cd05755, Ig2_ICAM-1_like, Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
          P S+E+   PS         +  TL+C V    P     +V  RGN  L 
Sbjct: 1  PDSVELSPLPSWQP----VGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS 46

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. Length = 100

>gnl|CDD|143293 cd05885, Ig2_Necl-4, Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

 Score = 32.6 bits (74), Expect = 0.002
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 38 EITLECLVKNAKPAAKIVWYRGNTELK 64
          E+ L CL   +KPAA + WYR   ELK
Sbjct: 1  EVELTCLSPRSKPAATLRWYRDRKELK 27

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. Length = 80

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          +    P +  +E++E +     C V    P   + W++    L+
Sbjct: 2  KFTQKPKD--VEVQEGESARFTCTVT-GDPDPTVSWFKDGQPLR 42

Length = 90

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          S   + E +++TL C      P     WY+    L 
Sbjct: 7  SPTVVFEGEDVTLTCSA-PGNPPPNYTWYKDGVPLS 41

This domain contains immunoglobulin-like domains. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.21
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	99.14
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	99.14
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	99.1
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.88
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.85
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.85
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.84
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.79
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.79
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.78
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.77
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.76
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.75
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.73
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.73
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.71
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.71
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.71
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.7
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.67
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.67
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.66
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.65
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.64
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.64
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.63
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.62
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.61
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.59
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.59
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.57
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.54
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.53
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.52
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.52
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.5
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.49
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.49
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.49
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.46
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.45
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.45
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.43
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.42
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.41
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.41
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.4
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.4
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.4
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	98.39
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.39
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.39
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.39
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.38
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.37
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.37
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.37
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.35
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.34
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.34
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.33
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.33
PHA02785	326	IL-beta-binding protein; Provisional	98.33
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.32
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.32
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.31
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.3
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.3
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.29
PHA02826	227	IL-1 receptor-like protein; Provisional	98.27
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.26
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.26
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.25
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.25
smart00407	75	IGc1 Immunoglobulin C-Type.	98.25
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.25
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.24
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.2
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.19
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.19
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.19
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.19
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.18
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.17
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	98.17
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.16
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.13
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.12
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.11
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.09
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.08
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.07
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.06
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.04
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.04
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.02
KOG4221|consensus	1381		98.01
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.01
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.0
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.0
KOG3515|consensus	741		98.0
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	97.98
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.98
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	97.97
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.96
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.94
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.92
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	97.92
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	97.91
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.91
KOG3513|consensus	1051		97.89
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.88
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	97.85
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.83
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.82
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.81
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.8
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.78
smart00409	86	IG Immunoglobulin.	97.77
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.77
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.75
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.74
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.73
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.69
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.66
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.66
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.63
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.58
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.57
KOG4221|consensus	1381		97.57
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.56
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.51
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.47
KOG4194|consensus	873		97.45
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.43
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.36
KOG4194|consensus	873		97.35
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.35
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.34
PHA03270	466	envelope glycoprotein C; Provisional	97.23
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.19
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.15
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.15
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.05
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.01
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.99
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	96.97
PHA03269	566	envelope glycoprotein C; Provisional	96.92
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.91
PHA03271	490	envelope glycoprotein C; Provisional	96.89
KOG3513|consensus	1051		96.89
PHA03273	486	envelope glycoprotein C; Provisional	96.86
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.83
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.82
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.75
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.61
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	96.53
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.52
KOG3515|consensus	741		96.5
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.43
PHA02785	326	IL-beta-binding protein; Provisional	96.37
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	96.37
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	96.34
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	96.23
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.21
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	96.21
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	96.19
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.07
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	96.0
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.0
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	95.95
KOG4222|consensus	1281		95.92
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	95.89
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	95.88
PHA02826	227	IL-1 receptor-like protein; Provisional	95.76
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	95.45
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	95.02
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	94.83
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	94.73
KOG4222|consensus	1281		94.33
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	94.29
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	94.12
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	94.1
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	94.1
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	93.85
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	93.6
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	93.0
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.43
PHA03052	69	Hypothetical protein; Provisional	91.93
smart00406	81	IGv Immunoglobulin V-Type.	91.83
PHA02865	338	MHC-like TNF binding protein; Provisional	91.19
PF09085	110	Adhes-Ig_like: Adhesion molecule, immunoglobulin-l	90.58
PF11049	71	KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-assoc	89.74
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	88.05
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	86.51
PHA03112	141	IL-18 binding protein; Provisional	85.22
KOG1480|consensus	909		83.84
PF02440	63	Adeno_E3_CR1: Adenovirus E3 region protein CR1; In	83.1
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	83.01
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	80.14
PF04668	132	Tsg: Twisted gastrulation (Tsg) protein conserved	80.03

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.21  E-value=2.5e-11  Score=65.31  Aligned_cols=28  Identities=50%  Similarity=0.903  Sum_probs=25.7

Q ss_pred             cEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          38 EITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        38 ~~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      .++|+|.+.+|+|+|.|+||||+++|.+
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~   28 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKG   28 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCC
Confidence            3689999999999999999999999864

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=99.14  E-value=1.7e-10  Score=64.39  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=30.5

Q ss_pred             EeecCCcEEEEEEecCCCCCce--EEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAK--IVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~--i~W~~~~~~l~   64 (65)
                      .+.+|+.++|+|++.+++|++.  |+|||+++++.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~   46 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS   46 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcc
Confidence            5789999999999999999998  69999999875

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.14  E-value=9.9e-11  Score=63.26  Aligned_cols=28  Identities=50%  Similarity=0.899  Sum_probs=25.7

Q ss_pred             cEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          38 EITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        38 ~~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      .++|+|.+.+++|+|.|+||||++++.|
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~   28 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTG   28 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcC
Confidence            3689999999999999999999999865

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=99.10  E-value=1.9e-10  Score=65.01  Aligned_cols=49  Identities=20%  Similarity=0.396  Sum_probs=41.0

Q ss_pred             EEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          12 YQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        12 ~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .|+++|+.|.|.+...    ....|+.++|.|.+.+++|+ ..|+|+|||+++.
T Consensus         1 ~v~~~P~~p~i~~~~~----~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~   50 (111)
T cd05772           1 SVRAKPSVPVVSGPSG----RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS   50 (111)
T ss_pred             CcccCCCCcEeCCchh----ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence            3789999998876443    45678899999999999996 7999999999874

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.88  E-value=5.9e-09  Score=57.86  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+.+..|+|.++|||||+++.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~   46 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLT   46 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCC
Confidence            346889999999999996658999999999999875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.85  E-value=6.5e-09  Score=55.89  Aligned_cols=27  Identities=37%  Similarity=0.812  Sum_probs=24.6

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      ++|+|.+.+++|+++|+|||||+++.+
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~   28 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKD   28 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcC
Confidence            689999999999999999999998753

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.85  E-value=7e-09  Score=55.26  Aligned_cols=27  Identities=44%  Similarity=0.897  Sum_probs=24.6

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      ++|+|.+.+++|+++|+|||||+++.+
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~   28 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKG   28 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccC
Confidence            689999999999999999999998753

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.84  E-value=7.6e-09  Score=55.49  Aligned_cols=27  Identities=41%  Similarity=0.759  Sum_probs=24.6

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      ++|+|.+.+++|+++|+|||||+++.+
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~   28 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEG   28 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCC
Confidence            689999999999999999999998753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.79  E-value=1.9e-08  Score=53.81  Aligned_cols=33  Identities=24%  Similarity=0.691  Sum_probs=28.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +.+.+|+.+.|+|.+. |+|.| +|+|+|||+++.
T Consensus         8 ~~v~~G~~v~l~C~a~-G~P~P~~I~W~k~g~~l~   41 (81)
T cd05749           8 LSVTANTPFNLTCQAV-GPPEPVEILWWQGGSPLG   41 (81)
T ss_pred             eEEcCCCCEEEEEEee-eecCCeEEEEEECCEECC
Confidence            5788999999999985 57888 799999999874

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.79  E-value=2.1e-08  Score=54.16  Aligned_cols=34  Identities=24%  Similarity=0.603  Sum_probs=29.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. |.|.|.|.|||+|+++.
T Consensus        10 ~v~v~~G~~v~L~C~v~-G~P~p~v~W~k~g~~l~   43 (92)
T cd05737          10 VVTIMEGKTLNLTCTVF-GDPDPEVSWLKNDQALA   43 (92)
T ss_pred             eEEEeCCCcEEEEEEEE-ecCCCeEEEEECCEECc
Confidence            45789999999999985 57999999999998763

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.78  E-value=2.8e-08  Score=52.43  Aligned_cols=34  Identities=18%  Similarity=0.462  Sum_probs=29.7

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+++.|.|.+..+.|.+.|.|||+|+.+.
T Consensus         6 ~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~   39 (86)
T cd05724           6 TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLN   39 (86)
T ss_pred             EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECC
Confidence            4678999999999986678999999999998763

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.77  E-value=2.6e-08  Score=53.39  Aligned_cols=34  Identities=21%  Similarity=0.584  Sum_probs=29.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|+|.+. |+|.+.|+|||+|+.+.
T Consensus        10 ~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~   43 (100)
T cd07693          10 DLIVSKGDPATLNCKAE-GRPTPTIQWLKNGQPLE   43 (100)
T ss_pred             eeEEcCCCeEEEEeeCC-cCCCCEEEEEECCEECc
Confidence            45788999999999985 57999999999998864

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.76  E-value=7.1e-08  Score=55.53  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=39.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~   62 (65)
                      ....++|+|..+|.. .+....    ....+|+.++|+|.+.+.+|+ ++|+|+|+|..
T Consensus        27 ~~~~~~l~v~~~P~v-~~~~~~----~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771          27 AQQIIQLSVSEPPRV-RLSLEK----LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eeeEEEEEEecCCce-EEeCCC----ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            445688999998854 333221    234478999999999988886 69999999853

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.75  E-value=2.2e-08  Score=52.91  Aligned_cols=26  Identities=42%  Similarity=0.891  Sum_probs=23.7

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.|+|.+.+++|.+.|+|||+|+++.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~   27 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLD   27 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEcc
Confidence            68999999989999999999999764

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.73  E-value=1.9e-08  Score=52.27  Aligned_cols=29  Identities=28%  Similarity=0.656  Sum_probs=25.5

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +|+.+.|.|.+. |+|.|.|+|||+|..+.
T Consensus         1 eG~~v~l~C~~~-g~P~p~i~W~k~g~~~~   29 (74)
T cd05745           1 EGQTVDFLCEAQ-GYPQPVIAWTKGGSQLS   29 (74)
T ss_pred             CCCeEEEEeECC-EecCCEEEEEECCEECC
Confidence            689999999984 58999999999998763

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.73  E-value=3.7e-08  Score=51.99  Aligned_cols=32  Identities=16%  Similarity=0.562  Sum_probs=28.1

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|.|.+.+ .|++.|+|||+|+++.
T Consensus         5 ~v~~G~~~~L~C~~~g-~P~p~i~W~k~g~~l~   36 (85)
T cd05857           5 AVPAANTVKFRCPAAG-NPTPTMRWLKNGKEFK   36 (85)
T ss_pred             EcCCCCEEEEEEEcCC-CCCCEEEEEECCEECC
Confidence            5788999999999954 6999999999998864

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.71  E-value=1.9e-08  Score=53.73  Aligned_cols=28  Identities=29%  Similarity=0.675  Sum_probs=24.8

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |+.++|+|.+.+++|+|.|+|+.++..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            6799999999999999999999998765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.71  E-value=6.3e-08  Score=52.59  Aligned_cols=42  Identities=26%  Similarity=0.350  Sum_probs=32.6

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |.|.....+..+.+.+|+.++|.|.+.+ . .+.|.||||+..+
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g-~-~p~i~W~kng~~l   43 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEG-Q-ATYIWWVNNGSLL   43 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCC-C-CCEEEEEECCEEC
Confidence            3444334444568999999999999965 5 8999999999875

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.71  E-value=5.1e-08  Score=51.73  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=26.5

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+|+.++|+|.+.+..+...+.|||||+.+
T Consensus        11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l   42 (78)
T cd05752          11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL   42 (78)
T ss_pred             EeeCCCCEEEEEeCCCCCCCccEEEEECCEEe
Confidence            67899999999999664234579999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.70  E-value=6e-08  Score=52.36  Aligned_cols=34  Identities=18%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+..|+.++|.|.+. |.|.+.++|+|+|+.+.
T Consensus        12 ~~~~~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~   45 (95)
T cd05730          12 NATANLGQSVTLACDAD-GFPEPTMTWTKDGEPIE   45 (95)
T ss_pred             ceEEeCCCCEEEEEecc-EeCCCEEEEEECCEECc
Confidence            45789999999999985 58999999999998764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.67  E-value=4.8e-08  Score=50.58  Aligned_cols=28  Identities=25%  Similarity=0.675  Sum_probs=24.4

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |+.++|.|.+. |+|.|.|+|+|+|+++.
T Consensus         1 G~~v~L~C~a~-G~P~P~v~W~k~g~~l~   28 (69)
T cd05739           1 GGSVNLTCVAV-GAPMPYVKWMKGGEELT   28 (69)
T ss_pred             CCeEEEEEEee-ecCCCEEEEEECCEECC
Confidence            67899999996 57999999999998763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.67  E-value=4.4e-08  Score=51.13  Aligned_cols=28  Identities=21%  Similarity=0.580  Sum_probs=24.4

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |+.++|.|.+. |.|.|.|+|||||+++.
T Consensus         1 G~~v~l~C~~~-G~P~p~i~W~k~g~~i~   28 (76)
T cd05867           1 GETARLDCQVE-GIPTPNITWSINGAPIE   28 (76)
T ss_pred             CCeEEEEEEee-EeCCCeEEEEECCEECC
Confidence            68899999985 57999999999998764

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.66  E-value=6.8e-08  Score=51.97  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.++|.|.+. |+|.|.|+|||++.++
T Consensus        11 ~~~~~G~~v~l~C~~~-G~P~P~v~W~k~~~~~   42 (88)
T cd05851          11 TYALKGQNVTLECFAL-GNPVPVIRWRKILEPM   42 (88)
T ss_pred             EEEeCCCcEEEEEEec-ccCCCEEEEEECCcCC
Confidence            4688999999999995 5899999999998765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.65  E-value=1e-07  Score=51.15  Aligned_cols=34  Identities=21%  Similarity=0.579  Sum_probs=29.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.+.|.|.+. |.|.|.++|+|+++++.
T Consensus         4 ~~~v~~G~~v~l~c~~~-G~P~P~v~W~k~~~~i~   37 (86)
T cd05894           4 TIVVVAGNKLRLDVPIS-GEPAPTVTWSRGDKAFT   37 (86)
T ss_pred             EEEEEcCCEEEEEeeEe-ecCCCeEEEEECCEECc
Confidence            45789999999999995 58999999999999874

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.64  E-value=1.2e-07  Score=51.14  Aligned_cols=34  Identities=21%  Similarity=0.551  Sum_probs=29.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.+.|.|.+. ++|.+.+.|||+|..+.
T Consensus        12 ~~~~~~G~~~~L~C~~~-g~P~p~v~W~k~g~~l~   45 (92)
T cd05747          12 SLTVSEGESARFSCDVD-GEPAPTVTWMREGQIIV   45 (92)
T ss_pred             cEEEeCCCcEEEEEEEe-ecCCCEEEEEECCEECC
Confidence            46789999999999985 68999999999998763

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.64  E-value=1.1e-07  Score=51.43  Aligned_cols=33  Identities=24%  Similarity=0.504  Sum_probs=28.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|++++|.|.+. +.|++.|+|+|||+.+.
T Consensus         9 ~~~~~g~~v~l~C~v~-g~P~p~i~W~k~g~~l~   41 (95)
T cd05722           9 IVAVRGGPVVLNCSAE-GEPPPKIEWKKDGVLLN   41 (95)
T ss_pred             eEEcCCCCEEEeeecc-cCCCCEEEEEECCeECc
Confidence            3567899999999985 46999999999999874

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.63  E-value=1.1e-07  Score=52.25  Aligned_cols=34  Identities=15%  Similarity=0.463  Sum_probs=30.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.+.|.|.+. |.|++.++|||||++|.
T Consensus         9 ~~~v~~G~~v~l~C~~~-G~p~p~v~W~kdg~~l~   42 (98)
T cd05762           9 DMKVRAGESVELFCKVT-GTQPITCTWMKFRKQIQ   42 (98)
T ss_pred             CEEEECCCEEEEEEEEc-ccCCCceEEEECCEEec
Confidence            35789999999999995 68999999999999874

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.62  E-value=6.9e-08  Score=50.63  Aligned_cols=28  Identities=21%  Similarity=0.531  Sum_probs=24.5

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |+.++|.|.+. |+|.|.|+|+|||+++.
T Consensus         1 g~~~~l~C~a~-G~P~P~i~W~k~g~~i~   28 (76)
T cd05868           1 GEDGTLICRAN-GNPKPSISWLTNGVPIE   28 (76)
T ss_pred             CCCEEEEEEee-EeCCCeEEEEECCEEcc
Confidence            67899999995 47999999999999873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.61  E-value=7.7e-08  Score=52.38  Aligned_cols=30  Identities=23%  Similarity=0.676  Sum_probs=25.9

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+|+.++|.|.+. |.|.|.|+|||||+++.
T Consensus        17 ~~g~~v~l~C~~~-G~P~P~i~W~k~g~~l~   46 (94)
T cd05848          17 SDEKKVILNCEAR-GNPVPTYRWLRNGTEID   46 (94)
T ss_pred             CCCCEEEEEEEee-ecCCCEEEEEECCeECc
Confidence            3578999999995 57999999999998874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.59  E-value=1.5e-07  Score=50.96  Aligned_cols=34  Identities=21%  Similarity=0.727  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.+.|.|.+. +.|.+.+.|||+|..+.
T Consensus        10 ~v~v~eG~~v~L~C~v~-g~P~p~i~W~k~~~~~~   43 (92)
T cd05891          10 VVTIMEGKTLNLTCTVF-GNPDPEVIWFKNDQDIE   43 (92)
T ss_pred             cEEEcCCCEEEEEEEEE-EeCCCeEEEEECCEECC
Confidence            46889999999999985 47999999999998763

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.59  E-value=1.5e-07  Score=50.50  Aligned_cols=31  Identities=19%  Similarity=0.433  Sum_probs=27.9

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+|+.+.|.|.+. |+|.|.|+||+||..+
T Consensus        11 ~v~~G~~v~l~C~~~-G~P~p~v~W~~~g~~~   41 (90)
T cd04972          11 VVYEGGTATIRCTAE-GSPLPKVEWIIAGLIV   41 (90)
T ss_pred             EEcCCCcEEEEEEEE-EcCCCeEEEEECCEEc
Confidence            478999999999996 5899999999999876

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.57  E-value=1.7e-07  Score=49.98  Aligned_cols=33  Identities=18%  Similarity=0.419  Sum_probs=28.7

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+..|+.++|.|.+. |.|.|.++|||+|+++.
T Consensus         9 ~~~~~G~~~~l~C~~~-g~p~p~v~W~k~g~~~~   41 (85)
T cd05728           9 TEADIGSSLRWECKAS-GNPRPAYRWLKNGQPLA   41 (85)
T ss_pred             cEEcCCCcEEEEEEee-EeCCCEEEEEECCEECC
Confidence            3678899999999985 57999999999999764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.54  E-value=1.7e-07  Score=48.45  Aligned_cols=28  Identities=18%  Similarity=0.462  Sum_probs=24.5

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |+.++|.|.+. ++|.|.|+||++|+++.
T Consensus         1 G~~~~l~C~~~-g~P~p~i~W~~~g~~~~   28 (76)
T cd04978           1 GETGRLDCEAE-GIPQPTITWRLNGVPIE   28 (76)
T ss_pred             CCeEEEEEEce-eeCCCEEEEEECCEECC
Confidence            68899999985 58999999999998763

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.53  E-value=4.2e-07  Score=48.06  Aligned_cols=34  Identities=29%  Similarity=0.805  Sum_probs=30.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.+.|+++|..+.
T Consensus         9 ~~~v~~G~~~~l~c~~~~-~p~~~v~W~~~~~~l~   42 (90)
T PF07679_consen    9 DVTVKEGESVTLECEVSG-NPPPTVTWYKNGRPLT   42 (90)
T ss_dssp             EEEEETTSEEEEEEEEEE-SSSSEEEEEETTEEEE
T ss_pred             CEEEeCCCEEEEEEEEEe-CCCCccccccccccee
Confidence            468899999999999975 5999999999998874

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.52  E-value=1.8e-07  Score=50.82  Aligned_cols=29  Identities=34%  Similarity=0.664  Sum_probs=24.9

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .|+.++|.|.+. |+|.+.|+||+||+.+.
T Consensus        18 ~g~~v~l~C~a~-g~P~p~i~W~~~g~~l~   46 (94)
T cd05850          18 PEEKVTLGCRAR-ASPPATYRWKMNGTEIK   46 (94)
T ss_pred             CCCeEEEEeEce-eCCCCEEEEEECCEECc
Confidence            356899999995 58999999999999874

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.52  E-value=5.9e-07  Score=46.06  Aligned_cols=32  Identities=25%  Similarity=0.770  Sum_probs=28.4

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|+|.+. ++|...+.|++++..+.
T Consensus        10 ~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~   41 (80)
T PF13895_consen   10 SVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPIN   41 (80)
T ss_dssp             EEETTSEEEEEEEEE-SSSSSEEEEEETTEEEE
T ss_pred             EEeCCCcEEEEEEEE-cccceeeeeeeeeeeee
Confidence            689999999999997 68889999999998763

...

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.50  E-value=3.1e-07  Score=48.38  Aligned_cols=32  Identities=16%  Similarity=0.448  Sum_probs=26.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|+|.+.+ . .+.|.|||||+++.
T Consensus         4 ~~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~   35 (79)
T cd04973           4 YSAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLG   35 (79)
T ss_pred             EEecCCCCEEEEEEecC-C-CceEEEeeCCcCCC
Confidence            46889999999999976 3 56899999998764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.49  E-value=1.5e-07  Score=48.79  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++|.|.+. |.|+|.++|||||+++.
T Consensus         1 ~~l~c~v~-g~P~P~v~W~kdg~~l~   25 (67)
T cd05863           1 VKLPVKVA-AYPPPEFQWYKDGKLIS   25 (67)
T ss_pred             CEEEEEEE-EeCCCEEEEEECCEECc
Confidence            47999995 58999999999999874

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.49  E-value=3.4e-07  Score=50.70  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+..|+.++|.|.+.+ .|+|.++|||||++|.
T Consensus        13 ~~~~~~~~~~l~~~v~g-~P~P~v~W~kdg~~l~   45 (101)
T cd05859          13 EFANLHEVKEFVVEVEA-YPPPQIRWLKDNRTLI   45 (101)
T ss_pred             EEEecCCcEEEEEEEEE-eCCCceEEEECCEECc
Confidence            36788899999999954 7999999999999874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.49  E-value=3.7e-07  Score=49.09  Aligned_cols=32  Identities=28%  Similarity=0.560  Sum_probs=27.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.++|.|.+. +.|.+.++|||++..+
T Consensus        11 ~~~~~g~~v~l~C~~~-g~p~p~v~W~~~~~~~   42 (96)
T cd05732          11 QTAVELEQITLTCEAE-GDPIPEITWRRATRNF   42 (96)
T ss_pred             eeEecCCcEEEEEEEe-EcCCCcEEEEECCccc
Confidence            4688999999999995 5799999999998544

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.46  E-value=7.6e-07  Score=48.39  Aligned_cols=30  Identities=23%  Similarity=0.584  Sum_probs=25.4

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          33 IRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ...|+.++|.|.+. |.|.|.|+||++++.+
T Consensus        14 ~~~g~~v~l~C~~~-G~P~P~v~W~~~~~~~   43 (97)
T cd05869          14 MELEEQITLTCEAS-GDPIPSITWRTSTRNI   43 (97)
T ss_pred             EEcCCCEEEEEEee-EeCCCEEEEEECCccc
Confidence            44589999999996 5799999999998765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.45  E-value=2.4e-07  Score=47.66  Aligned_cols=26  Identities=23%  Similarity=0.721  Sum_probs=22.6

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.|.|.+.++.|.+.++|||+|+++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~   26 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELN   26 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeecc
Confidence            47999998768999999999998764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.45  E-value=3e-07  Score=47.77  Aligned_cols=32  Identities=25%  Similarity=0.612  Sum_probs=27.1

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +....|+.++|.|.+. +.|.+.++|||++..+
T Consensus         4 ~~~~~G~~v~L~C~~~-g~p~p~i~W~k~~~~~   35 (82)
T cd05856           4 IARPVGSSVRLKCVAS-GNPRPDITWLKDNKPL   35 (82)
T ss_pred             eeccCCCeEEEEEEee-EeCCCcEEEEECCcCC
Confidence            4567799999999985 4799999999998765

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.43  E-value=5e-07  Score=48.15  Aligned_cols=32  Identities=25%  Similarity=0.549  Sum_probs=27.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.++|.|.+. ++|.+.++|+|++..+
T Consensus        11 ~~~~~g~~v~l~C~~~-g~P~p~v~W~k~~~~~   42 (88)
T cd04968          11 TYALKGQNVTLECFAL-GNPVPQIKWRKVDGSM   42 (88)
T ss_pred             eEEeCCCcEEEEEEee-EeCCCEEEEEECCCcC
Confidence            4678999999999985 5799999999987654

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.42  E-value=7.9e-07  Score=47.10  Aligned_cols=33  Identities=30%  Similarity=0.600  Sum_probs=28.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+.+|+.++|.|.+.++.|.+.|.|++++..+
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~   43 (85)
T cd05754          11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL   43 (85)
T ss_pred             eEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC
Confidence            467889999999999776799999999998654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.41  E-value=3.7e-07  Score=48.07  Aligned_cols=25  Identities=40%  Similarity=0.825  Sum_probs=21.6

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.|.|.+. |.|.|.|+|||||+.+.
T Consensus         1 v~l~C~v~-G~P~P~i~W~k~~~~i~   25 (75)
T cd05892           1 VKLECQIS-AIPPPKIFWKRNNEMVQ   25 (75)
T ss_pred             CEEEEEEE-ecCCCeEEEEECCEECc
Confidence            47999995 57999999999999874

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.41  E-value=1.2e-06  Score=47.58  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=27.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+..|+++.|.|.+. + |.+.|+|++||+++.
T Consensus         5 ~~~v~~G~~v~L~C~~~-~-~~~~i~W~~ng~~i~   37 (87)
T cd05873           5 QRTFKLGNNAELKCSPK-S-NLARVVWKFDGKVLT   37 (87)
T ss_pred             eEEEECCCCEEEEEECC-C-CCCeEEEEECCEECC
Confidence            35789999999999974 3 678999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.40  E-value=1.4e-06  Score=47.37  Aligned_cols=28  Identities=32%  Similarity=0.583  Sum_probs=24.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+|+.++|.|.+. |.|.|.|+|||+
T Consensus        11 ~~~~~G~~v~l~C~~~-G~P~p~i~W~k~   38 (98)
T cd05870          11 ETTVENGAATLSCKAE-GEPIPEITWKRA   38 (98)
T ss_pred             EEEcCCCcEEEEEecc-cCCCCeEEEEEC
Confidence            5789999999999985 579999999994

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.40  E-value=6.4e-07  Score=46.28  Aligned_cols=28  Identities=32%  Similarity=0.687  Sum_probs=24.2

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |+.+.|.|.+. +.|.+.++|||+++.+.
T Consensus         1 G~~v~L~C~~~-g~P~p~v~W~k~~~~~~   28 (73)
T cd04969           1 GGDVIIECKPK-AAPKPTISWSKGTELLT   28 (73)
T ss_pred             CCeEEEEEeee-EcCCCEEEEEECCEEcc
Confidence            67899999985 57999999999998763

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.40  E-value=4.4e-07  Score=47.76  Aligned_cols=24  Identities=33%  Similarity=0.767  Sum_probs=20.9

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.|.|.+. |+|.|+|+|||||.++
T Consensus         1 ~~l~C~a~-G~P~P~i~W~k~g~~l   24 (77)
T cd05874           1 IVIQCEAK-GKPPPSFSWTRNGTHF   24 (77)
T ss_pred             CEEEeeCc-ccCCCeEEEEECCeEC
Confidence            47999995 5799999999999876

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=98.39  E-value=6.1e-07  Score=49.81  Aligned_cols=30  Identities=27%  Similarity=0.564  Sum_probs=27.1

Q ss_pred             eEEeecCCcEEE-EEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITL-ECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L-~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.+.+ +|.+.+|+|+|+|+||.+
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~   40 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETN   40 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence            456788999999 999999999999999987

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.39  E-value=5.6e-07  Score=47.04  Aligned_cols=27  Identities=33%  Similarity=0.684  Sum_probs=23.7

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |+.+.|.|.+. +.|.|.|+|||+++.+
T Consensus         1 G~~~~l~C~~~-g~P~p~v~W~k~~~~l   27 (73)
T cd05852           1 GGRVIIECKPK-AAPKPKFSWSKGTELL   27 (73)
T ss_pred             CCeEEEEEecc-eeCCCEEEEEeCCEec
Confidence            67899999996 5799999999999865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.39  E-value=1.1e-06  Score=49.05  Aligned_cols=29  Identities=17%  Similarity=0.486  Sum_probs=25.1

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .|..++|.|.+. |+|.+.++|+|||..+.
T Consensus        22 ~g~~v~L~C~a~-G~P~p~i~W~k~g~~l~   50 (109)
T cd05773          22 GSSDANLVCQAQ-GVPRVQFRWAKNGVPLD   50 (109)
T ss_pred             CCCEEEEEEECc-ccCCCEEEEEECCEECC
Confidence            467899999996 58999999999998763

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.39  E-value=7.9e-07  Score=47.45  Aligned_cols=32  Identities=25%  Similarity=0.457  Sum_probs=28.1

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+|+.++|+|.+.++.|..++.|||+|+.+
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~   41 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAK   41 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEc
Confidence            57899999999998766778899999999865

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.38  E-value=2.3e-06  Score=46.55  Aligned_cols=33  Identities=24%  Similarity=0.456  Sum_probs=28.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+.+ .|.| .|.|+++++.+.
T Consensus        11 ~~~~~G~~v~L~C~~~g-~P~P~~v~W~~~~~~i~   44 (98)
T cd05758          11 QYAILGDKGRVECFIFS-TPPPDRIVWTWKENELE   44 (98)
T ss_pred             EEEeCCCcEEEEEEEcc-cCCCCEeEEEECCEEcc
Confidence            46789999999999964 6887 699999998763

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.37  E-value=7.5e-07  Score=47.74  Aligned_cols=31  Identities=26%  Similarity=0.549  Sum_probs=26.7

Q ss_pred             ecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      ..|+.++|.|.+.+.+| .++|+|++||+.+.
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~   42 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELT   42 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECC
Confidence            36889999999998877 47899999999874

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.37  E-value=5e-07  Score=47.34  Aligned_cols=25  Identities=32%  Similarity=0.801  Sum_probs=21.4

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++|.|.+. |.|.|.|+|||+|.++.
T Consensus         1 v~L~C~~~-g~P~p~v~W~k~g~~l~   25 (77)
T cd05760           1 VTLRCHID-GHPRPTYQWFRDGTPLS   25 (77)
T ss_pred             CEEEEEee-ecCCCcEEEEECCEECC
Confidence            47999985 57999999999999873

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.37  E-value=1.4e-06  Score=47.78  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=27.7

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +..|+..+|+|.+.+..|+. +++|+|||+++.
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~   43 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEET   43 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecC
Confidence            34678899999999999987 899999999864

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.35  E-value=7.9e-07  Score=45.88  Aligned_cols=26  Identities=23%  Similarity=0.654  Sum_probs=22.1

Q ss_pred             cEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          38 EITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        38 ~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .++|.|.+. |.|.|.|+|||+|.++.
T Consensus         1 ~v~l~C~~~-G~P~p~v~W~k~g~~~~   26 (71)
T cd05723           1 DVIFECEVT-GKPTPTVKWVKNGDMVI   26 (71)
T ss_pred             CEEEEEEEE-EeCCCEEEEEECCeECC
Confidence            378999995 57999999999998763

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.34  E-value=6.1e-07  Score=47.01  Aligned_cols=24  Identities=29%  Similarity=0.727  Sum_probs=20.9

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ++|.|.+. |+|+|+|+|||||..+
T Consensus         1 i~l~C~~~-G~P~P~v~W~k~g~~l   24 (77)
T cd05733           1 IVIKCEAK-GNPPPTFSWTRNGTHF   24 (77)
T ss_pred             CEEEeeCc-ccCCCeEEEEECCeEC
Confidence            47999985 5799999999999876

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.34  E-value=9.8e-07  Score=48.43  Aligned_cols=31  Identities=23%  Similarity=0.488  Sum_probs=25.3

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEE-CCEEc
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYR-GNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~-~~~~l   63 (65)
                      .+..|+.++|.|.+.+ .| ++.|+||+ |++.+
T Consensus        11 ~v~~G~~v~l~C~v~G-~P~~p~i~W~~~~g~~l   43 (96)
T cd05865          11 EISVGESKFFLCQVAG-EAKDKDISWFSPNGEKL   43 (96)
T ss_pred             EECCCCeEEEEEEEeC-CCCCCEEEEECCCCcCc
Confidence            5778999999999966 56 57999998 77654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.33  E-value=1.3e-06  Score=47.54  Aligned_cols=28  Identities=18%  Similarity=0.581  Sum_probs=23.8

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |..+.|.|.+. |+|.|.|+|||+++.+.
T Consensus        19 ~~~v~l~C~a~-G~P~P~i~W~k~~~~i~   46 (93)
T cd05849          19 EGKVSVNCRAR-ANPFPIYKWRKNNLDID   46 (93)
T ss_pred             CCeEEEeCcCc-cCCCCEEEEEECCEEcc
Confidence            44799999995 57999999999998763

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.33  E-value=8.3e-07  Score=46.39  Aligned_cols=25  Identities=40%  Similarity=0.779  Sum_probs=21.6

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++|.|.+. |.|.|.|+|||||+.+.
T Consensus         1 v~L~C~v~-G~P~P~v~W~k~~~~i~   25 (75)
T cd05744           1 VRLECRVS-AIPPPQIFWKKNNEMLT   25 (75)
T ss_pred             CEEEEEEe-ecCCCeEEEEECCEECC
Confidence            47999995 58999999999998874

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.33  E-value=5.4e-06  Score=53.90  Aligned_cols=53  Identities=15%  Similarity=0.234  Sum_probs=35.6

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK   64 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~   64 (65)
                      +.|.|..+...|.+.. +  ..+.+..|+.++|+|.+.++.++  +.|.|+|||+.+.
T Consensus       211 v~l~V~~~~~pp~~~~-p--~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~  265 (326)
T PHA02785        211 VKLEVRDRIIPPTMQL-P--EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE  265 (326)
T ss_pred             EEEEEeccCCCceecC-C--CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence            4566654333334432 2  24567789999999999775433  5899999998763

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.32  E-value=1e-06  Score=46.13  Aligned_cols=27  Identities=15%  Similarity=0.439  Sum_probs=23.6

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |+.++|.|.+. +.|.|.|+||+++..+
T Consensus         1 G~~v~l~C~~~-g~P~p~v~W~~~~~~~   27 (78)
T cd05743           1 GETVEFTCVAT-GVPTPIINWRLNWGHV   27 (78)
T ss_pred             CCEEEEEEEEE-EecCCEEEEEECCeEC
Confidence            68899999996 5799999999998765

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.32  E-value=7.8e-07  Score=46.74  Aligned_cols=25  Identities=36%  Similarity=0.757  Sum_probs=21.4

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++|.|.+. |.|.|.|+|||+++++.
T Consensus         1 v~l~C~v~-G~P~P~v~W~k~~~~l~   25 (75)
T cd05893           1 VRLECRVS-GVPHPQIFWKKENESLT   25 (75)
T ss_pred             CEEEEEEe-EecCCEEEEEECCEECC
Confidence            47999995 57999999999998764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.31  E-value=7e-07  Score=46.40  Aligned_cols=26  Identities=19%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.|.|.+.++.|.+.++|||||+++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~   26 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIG   26 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccc
Confidence            47999987778999999999998863

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.30  E-value=8.9e-07  Score=48.38  Aligned_cols=32  Identities=16%  Similarity=0.564  Sum_probs=27.5

Q ss_pred             EEeecCCcEEEEEEecCC----CCCceEEEEECCEE
Q psy7728          31 IEIRENQEITLECLVKNA----KPAAKIVWYRGNTE   62 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~----~P~~~i~W~~~~~~   62 (65)
                      ..+.+|+.+.|.|.+.+.    .|.+.|+|||+|..
T Consensus         9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~   44 (94)
T cd05756           9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGK   44 (94)
T ss_pred             EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCC
Confidence            467899999999998765    68899999999865

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.30  E-value=2e-06  Score=45.95  Aligned_cols=31  Identities=29%  Similarity=0.529  Sum_probs=26.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+.+|+.+.|.|.+. + |.+.|.|||++..+
T Consensus         6 ~~v~~g~~v~L~C~~~-~-p~~~i~W~k~~~~~   36 (89)
T cd04979           6 VTVVEGNSVFLECSPK-S-NLASVVWLFQGGPL   36 (89)
T ss_pred             EEEECCCcEEEEEeCC-C-CCceEEEEECCccc
Confidence            5688999999999985 4 88899999998754

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.29  E-value=1.1e-06  Score=46.27  Aligned_cols=24  Identities=29%  Similarity=0.649  Sum_probs=20.7

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.|.|.+. |+|.|.|+|||||..+
T Consensus         1 ~~l~C~~~-G~P~P~v~W~k~g~~~   24 (77)
T cd05875           1 IIIECEAK-GNPVPTFQWTRNGKFF   24 (77)
T ss_pred             CEEEEecc-ccCCCEEEEEECCEEc
Confidence            46899995 5799999999999865

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.27  E-value=5.1e-06  Score=51.92  Aligned_cols=33  Identities=12%  Similarity=0.415  Sum_probs=27.8

Q ss_pred             EeecCCcEEEEEEecCC----CCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNA----KPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~----~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|+|.+.++    .|.++|+|||||+++.
T Consensus       140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~  176 (227)
T PHA02826        140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL  176 (227)
T ss_pred             eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence            56789999999998654    4689999999999873

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.26  E-value=1.7e-06  Score=47.93  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.+.|.|....+.|++.+.|++|+.++
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~   45 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN   45 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence            478999999999999999999999999998753

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.26  E-value=4.7e-06  Score=43.31  Aligned_cols=32  Identities=16%  Similarity=0.519  Sum_probs=27.7

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+..|+.++|.|.+. +.|.+.+.|||++..+
T Consensus         4 ~~~~~G~~~~l~C~~~-~~p~~~v~W~k~~~~~   35 (85)
T cd05729           4 HAVPAGSTVRLKCPAS-GNPRPTITWLKDGKPF   35 (85)
T ss_pred             eEecCCCcEEEEEEcC-CCCCCeEEEEECCEEC
Confidence            4677899999999996 4689999999998875

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.25  E-value=2.6e-06  Score=47.32  Aligned_cols=31  Identities=29%  Similarity=0.558  Sum_probs=26.1

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..|..++|+|.+.+..|.. .++|+|||+++.
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            3467799999999998875 689999999864

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.25  E-value=2.1e-06  Score=46.10  Aligned_cols=29  Identities=21%  Similarity=0.617  Sum_probs=24.5

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..|..+.|.|.+. ++|++.|+|||+++.+
T Consensus        17 ~~~~~~~l~C~~~-g~p~p~i~W~k~~~~l   45 (91)
T cd04967          17 SDEGKVSLNCRAR-GSPPPTYRWLMNGTEI   45 (91)
T ss_pred             CCCCEEEEEEeee-EcCCCEEEEEECCEEC
Confidence            3456799999995 4799999999999987

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.25  E-value=2e-06  Score=45.00  Aligned_cols=25  Identities=36%  Similarity=0.723  Sum_probs=22.3

Q ss_pred             EEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      ++|.|.+.+.+|+ .+|+|+|||+++
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~   27 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEV   27 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence            6899999999998 699999999863

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.25  E-value=1.3e-06  Score=45.23  Aligned_cols=25  Identities=32%  Similarity=0.651  Sum_probs=21.4

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.|.|.+. |.|+|.++|||||+++.
T Consensus         1 ~~l~c~v~-g~P~p~v~W~k~g~~l~   25 (71)
T cd04976           1 VRLPVKVK-AYPPPEIQWYKNGKLIS   25 (71)
T ss_pred             CEEEeEEE-EeCCCEEEEEECCEECC
Confidence            46899995 57999999999999874

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.24  E-value=2.5e-06  Score=45.83  Aligned_cols=27  Identities=11%  Similarity=0.384  Sum_probs=24.0

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |+.++|.|.+.+ .|++.|+|+|+++.+
T Consensus         1 g~~~~l~C~~~g-~p~~~i~W~k~~~~i   27 (88)
T cd05735           1 GQKKEMSCTAHG-EKPIIVRWEKEDRII   27 (88)
T ss_pred             CCeEEEEEEEEC-CCCCEEEEeeCCEEC
Confidence            788999999975 699999999999876

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.20  E-value=1.7e-06  Score=44.97  Aligned_cols=24  Identities=13%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             EEEEEecCCCCCceEEEEECCEEcc
Q psy7728          40 TLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        40 ~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|.+. |.|.|.++|||||+++.
T Consensus         2 ~~~c~v~-G~P~P~v~W~k~g~~l~   25 (70)
T cd05864           2 KIPVKYY-GYPPPEVKWYKNGQLIV   25 (70)
T ss_pred             EEEeEEE-EeCCCEEEEEECCEECC
Confidence            6889985 58999999999999874

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.19  E-value=2e-06  Score=44.68  Aligned_cols=25  Identities=20%  Similarity=0.611  Sum_probs=21.1

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++|.|.+. |+|.|.|+|||++.++.
T Consensus         1 a~l~C~~~-G~P~p~v~W~k~~~~~~   25 (74)
T cd05738           1 ATMLCAAS-GNPDPEITWFKDFLPVD   25 (74)
T ss_pred             CEEEEEEe-EecCCEEEEEECCEECc
Confidence            37999985 58999999999998764

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.19  E-value=3.1e-06  Score=43.64  Aligned_cols=25  Identities=20%  Similarity=0.608  Sum_probs=21.7

Q ss_pred             cEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          38 EITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        38 ~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.|.|.+. |.|.|.++|||+|+.+
T Consensus         1 ~~~l~c~~~-G~P~p~v~W~k~g~~l   25 (74)
T cd05748           1 SVRLEVPIS-GRPTPTVTWSKDGKPL   25 (74)
T ss_pred             CEEEEeeEe-eeCCCeEEEEECCEEc
Confidence            368999995 5899999999999886

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.19  E-value=4.8e-06  Score=40.19  Aligned_cols=29  Identities=31%  Similarity=0.699  Sum_probs=24.3

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +|+.++|.|.+ .+.|.+.+.||++++.+.
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~   29 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP   29 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECC
Confidence            58899999996 457889999999988653

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.19  E-value=1.6e-06  Score=44.38  Aligned_cols=25  Identities=16%  Similarity=0.654  Sum_probs=21.2

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++|.|.+. |.|.|.|+|+|+|.++.
T Consensus         1 v~L~C~~~-g~P~p~i~W~k~g~~~~   25 (69)
T cd05746           1 VQIPCSAQ-GDPEPTITWNKDGVQVT   25 (69)
T ss_pred             CEeEecce-EeCCCEEEEEECCEECC
Confidence            47999985 57999999999998763

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.18  E-value=3.9e-06  Score=47.74  Aligned_cols=31  Identities=26%  Similarity=0.533  Sum_probs=26.5

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .++..++|+|.+.+..|+. +|+|+|||+++.
T Consensus        16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~   47 (115)
T cd05769          16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVT   47 (115)
T ss_pred             ccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence            3567789999999999984 899999998864

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.17  E-value=2.7e-06  Score=45.60  Aligned_cols=26  Identities=19%  Similarity=0.655  Sum_probs=22.4

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      |+.++|.|.+ .++|.+.|.|||+|..
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~   26 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQ   26 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCc
Confidence            6889999998 5579999999999864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.17  E-value=3.7e-06  Score=46.88  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=28.3

Q ss_pred             EeecCCcEEEEEEecCCCCC--ceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPA--AKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l   63 (65)
                      .+.+|+.+++.|.+.++.|.  ..|.|||+...+
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l   44 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLL   44 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCccee
Confidence            57999999999999999998  789999987654

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.16  E-value=3.6e-06  Score=46.48  Aligned_cols=32  Identities=22%  Similarity=0.510  Sum_probs=27.1

Q ss_pred             eecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      ..+++.++|+|.+.+.+| ...|+|+|||+++.
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            345677899999999998 67899999999873

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.13  E-value=2.2e-06  Score=44.21  Aligned_cols=24  Identities=29%  Similarity=0.714  Sum_probs=20.4

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.|.|.+. |.|.|.|+|+|++..+
T Consensus         1 ~~L~C~~~-G~P~P~v~W~k~~~~~   24 (71)
T cd05876           1 LVLECIAE-GLPTPEVHWDRIDGPL   24 (71)
T ss_pred             CEEEEEee-EecCCeEEEEECCcCC
Confidence            47999995 5899999999998754

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.12  E-value=3.3e-06  Score=44.32  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.|.|.+. |.|+|.++|||||+++.
T Consensus         1 ~~l~c~v~-g~P~P~v~W~kdg~~l~   25 (72)
T cd07702           1 YRLTPKVK-AFPAPEVIWLKDGLPAA   25 (72)
T ss_pred             CeEEeeEE-EcCCCeEEEEECCEECC
Confidence            36899985 57999999999999864

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.11  E-value=6.8e-06  Score=44.43  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=24.6

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l   63 (65)
                      ..+..|+.+.|.|.+.+. |+ .++||+ +++.+
T Consensus        10 ~~v~~G~~~~l~C~~~G~-p~-~i~W~~~~~~~~   41 (92)
T cd04977          10 GEISVGESKFFLCQVIGE-PK-DISWFSPNGEKL   41 (92)
T ss_pred             EEECCCCeEEEEEEeEee-CC-eEEEECCCCCEe
Confidence            367889999999999764 65 999998 56543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.09  E-value=5.3e-06  Score=43.12  Aligned_cols=24  Identities=21%  Similarity=0.613  Sum_probs=20.9

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECC
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      |+.++|.|.+ .+.|.|.|+|||++
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~k~~   24 (81)
T cd05765           1 GETASFHCDV-TGRPPPEITWEKQV   24 (81)
T ss_pred             CCcEEEEeec-cccCCCcEEEEecC
Confidence            6889999998 45899999999973

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.08  E-value=4.8e-06  Score=44.47  Aligned_cols=23  Identities=17%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             EEEEecCCCCCceEEEEECCEEcc
Q psy7728          41 LECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        41 L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +-|.+ .|+|.|.|+|||||++|.
T Consensus         3 i~~~v-~G~P~Pti~W~kng~~l~   25 (79)
T cd05855           3 IPFTV-KGNPKPTLQWFHEGAILN   25 (79)
T ss_pred             EEEEE-eEeCCCceEEEECCEECC
Confidence            56777 458999999999999885

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.07  E-value=6.4e-06  Score=44.25  Aligned_cols=24  Identities=17%  Similarity=0.526  Sum_probs=20.8

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECC
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      |+.++|.|.+. |.|.|.|+|+|++
T Consensus         1 G~~v~l~C~v~-g~P~P~i~W~k~~   24 (90)
T cd04974           1 GSDVEFHCKVY-SDAQPHIQWLKHV   24 (90)
T ss_pred             CCcEEEEEEEe-CCCCCeEEEEEec
Confidence            67899999995 5799999999963

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.06  E-value=9.3e-06  Score=44.78  Aligned_cols=21  Identities=29%  Similarity=0.688  Sum_probs=19.6

Q ss_pred             EEEEEEecCCCCCceEEEEEC
Q psy7728          39 ITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..++|.+.+|+|+++|+||++
T Consensus        18 ~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          18 PVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             EEEEEEcCCCCCCcEEEEEcC
Confidence            568999999999999999998

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.04  E-value=7.8e-06  Score=44.96  Aligned_cols=22  Identities=32%  Similarity=0.595  Sum_probs=19.7

Q ss_pred             cEEEEEEecCCCCCceEEEEEC
Q psy7728          38 EITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        38 ~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ...++|.+.+|+|+|+|+||++
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          17 VTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeC
Confidence            3457999999999999999997

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.04  E-value=6.6e-06  Score=41.76  Aligned_cols=24  Identities=33%  Similarity=0.756  Sum_probs=20.5

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ++|.|.+. |.|.|.++|||++..+
T Consensus         1 v~l~C~~~-g~P~p~v~W~k~~~~~   24 (71)
T cd05731           1 LLLECIAE-GLPTPEISWIKIGGEL   24 (71)
T ss_pred             CEEEEEee-EecCCeEEEEECCeEC
Confidence            47999995 5799999999998765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.02  E-value=7.1e-06  Score=43.68  Aligned_cols=23  Identities=22%  Similarity=0.651  Sum_probs=19.5

Q ss_pred             EEEEecCCCCCceEEEEECCEEcc
Q psy7728          41 LECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        41 L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.|.+. |+|.|.|+|||||+++.
T Consensus         3 i~~~v~-G~P~P~v~W~k~g~~i~   25 (81)
T cd04971           3 IPFTVR-GNPKPTLTWYHNGAVLN   25 (81)
T ss_pred             EEEEeE-eeCCCcEEEEECCEECc
Confidence            578884 58999999999999874

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>KOG4221|consensus

Probab=98.01  E-value=2.1e-05  Score=58.55  Aligned_cols=61  Identities=21%  Similarity=0.468  Sum_probs=44.9

Q ss_pred             cccCCCEEEEEEcCCCccE-EEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           3 SRYGPRTRLYQFAPPSSIE-IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         3 ~~~~~~~~L~V~~pP~~~~-i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +|++..+.|+|.-.|.... +.-...++...+.+|+.+.|.|.+. +-|.|.|.|.|||+.+.
T Consensus       218 ~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs-~~p~p~v~Wlrng~~i~  279 (1381)
T KOG4221|consen  218 QRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVS-GVPKPSVKWLRNGEKIS  279 (1381)
T ss_pred             CCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEec-CCCCCceEEeeCCeeee
Confidence            5788999999994333211 1111233456789999999999994 58999999999998863

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.01  E-value=1.5e-05  Score=40.97  Aligned_cols=27  Identities=26%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             CCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYR-GNTEL   63 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~-~~~~l   63 (65)
                      |+.++|.|.+. +.|.|.++|++ +++.+
T Consensus         1 G~~~~l~C~~~-g~P~p~v~W~~~~~~~~   28 (74)
T cd05764           1 GQRATLRCKAR-GDPEPAIHWISPDGKLI   28 (74)
T ss_pred             CCeEEEEEEcc-CcCCCEEEEEeCCCEEe
Confidence            68899999985 57999999997 55543

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.00  E-value=1.5e-05  Score=42.53  Aligned_cols=26  Identities=19%  Similarity=0.593  Sum_probs=20.9

Q ss_pred             CcEEEEEEecCCCCCc--eEEEEECCEEc
Q psy7728          37 QEITLECLVKNAKPAA--KIVWYRGNTEL   63 (65)
Q Consensus        37 ~~~~L~C~~~~~~P~~--~i~W~~~~~~l   63 (65)
                      ++++|.|.+.+ +|.+  .++|+|||+++
T Consensus         1 ~~~~L~C~a~g-~P~p~~~v~W~~~g~~i   28 (85)
T cd05854           1 ENLTLQCHASH-DPTMDLTFTWSLDDFPI   28 (85)
T ss_pred             CcEEEEEEEec-CCCCCeEEEEEECCeEc
Confidence            46899999965 5655  68999999876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.00  E-value=1.8e-05  Score=42.90  Aligned_cols=27  Identities=22%  Similarity=0.614  Sum_probs=23.7

Q ss_pred             CCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728          36 NQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      |+.++|+|.+.+..|+. .|+|+|+|+.
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~   41 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGED   41 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence            67899999999988876 8999999963

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>KOG3515|consensus

Probab=98.00  E-value=6.1e-06  Score=58.83  Aligned_cols=49  Identities=18%  Similarity=0.429  Sum_probs=40.4

Q ss_pred             EEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        13 V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |+.+|..|.+..... .+ .+++|+.|.|.|.+.+++|++.+.||+.++.+
T Consensus         1 vl~~p~~pv~~~~~l-~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~   49 (741)
T KOG3515|consen    1 VLFPPNVPVCESSSL-TV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGE   49 (741)
T ss_pred             CCcCCCCccccCCCC-Ch-hhccCCcceeeeecCCCCCCcceEEEecCccc
Confidence            567888888765443 23 78999999999999999999999999998754

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.98  E-value=9.8e-06  Score=41.27  Aligned_cols=24  Identities=25%  Similarity=0.760  Sum_probs=20.0

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ++|.|.+. |.|+|.++|+|++..+
T Consensus         1 v~l~C~~~-g~P~p~v~W~k~~~~~   24 (69)
T cd05725           1 VEFQCEVG-GDPVPTVLWRKEDGEL   24 (69)
T ss_pred             CEEEEECc-cCCCCEEEEEECCccC
Confidence            47999985 5799999999998654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.98  E-value=1.7e-05  Score=43.26  Aligned_cols=31  Identities=19%  Similarity=0.554  Sum_probs=25.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l   63 (65)
                      +.+.+|+.++|.|.+.| .|. .++||+ +++.+
T Consensus        10 ~~v~~G~~v~l~C~~~G-~P~-~v~W~k~~g~~~   41 (92)
T cd05866          10 VELSVGESKFFTCTAIG-EPE-SIDWYNPQGEKI   41 (92)
T ss_pred             eEEcCCCeEEEEEEEEE-eCC-eEEEEeCCCeEe
Confidence            36788999999999965 787 999998 46654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=97.97  E-value=1.7e-05  Score=42.51  Aligned_cols=23  Identities=17%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             CCcEEEEEEecCCCCCceEEEEEC
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      |+.++|.|.+. +.|.|.|+|+|+
T Consensus         1 G~~v~L~C~~~-g~P~P~i~W~k~   23 (90)
T cd05858           1 GSTVEFVCKVY-SDAQPHIQWLKH   23 (90)
T ss_pred             CCeEEEEEEEe-cCCCCEEEEEEe
Confidence            67899999995 579999999994

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.96  E-value=9.2e-06  Score=44.30  Aligned_cols=33  Identities=12%  Similarity=0.278  Sum_probs=27.2

Q ss_pred             EeecCCcEEEEEEecCC----CCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNA----KPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~----~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+...|+|...+.    +|.+.|.||||++++.
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~   42 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLE   42 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECC
Confidence            56789999999987543    3788999999999874

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.94  E-value=2.1e-05  Score=43.12  Aligned_cols=31  Identities=19%  Similarity=0.404  Sum_probs=26.7

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      ..+.+|+.+.|.|.+.+ .|.+.|.|+|+++.
T Consensus         7 ~tv~~G~tv~L~C~v~g-~~~~~v~W~k~~~~   37 (95)
T cd05882           7 ETVAVGGTVTLKCGVKE-HDNSSLQWSNTAQQ   37 (95)
T ss_pred             EEEecCCcEEEEEEEeC-CCCCeEEEeccCcc
Confidence            57899999999999965 68899999997753

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.92  E-value=2.3e-05  Score=43.30  Aligned_cols=33  Identities=18%  Similarity=0.478  Sum_probs=28.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +.+.+.+|+.+.|.|....+.|.+.|.|++++.
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~   43 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDL   43 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCC
Confidence            456899999999999977889999999998764

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.92  E-value=1.2e-05  Score=41.55  Aligned_cols=21  Identities=29%  Similarity=0.757  Sum_probs=18.4

Q ss_pred             EEEEEecCCCCCceEEEEECCE
Q psy7728          40 TLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        40 ~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|.|.+. |.|.|.|+|||+|.
T Consensus         2 ~l~C~~~-G~P~P~v~W~k~~~   22 (75)
T cd05763           2 RLECAAT-GHPTPQIAWQKDGG   22 (75)
T ss_pred             EeEeecc-cccCCEEEEEeCCC
Confidence            6899985 58999999999985

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=97.91  E-value=2.7e-05  Score=41.15  Aligned_cols=27  Identities=22%  Similarity=0.573  Sum_probs=21.3

Q ss_pred             CcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728          37 QEITLECLVKNAKPAA--KIVWYRGNTELK   64 (65)
Q Consensus        37 ~~~~L~C~~~~~~P~~--~i~W~~~~~~l~   64 (65)
                      +.++|.|.+.+ .|.+  .++|+|||+++.
T Consensus         1 e~~~L~C~~~g-~P~p~i~~~W~~~g~~i~   29 (85)
T cd04970           1 ESITLQCHASH-DPTLDLTFTWSFNGVPID   29 (85)
T ss_pred             CcEEEEEEEec-CCCCCeEEEEEECCeEee
Confidence            46899999964 5766  679999998763

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.91  E-value=2.1e-05  Score=39.16  Aligned_cols=27  Identities=22%  Similarity=0.639  Sum_probs=23.3

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      |+.++|+|.+....|...+.|+++++.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~   27 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQS   27 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTT
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCcc
Confidence            788999999955678999999999864

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG3513|consensus

Probab=97.89  E-value=4.3e-05  Score=56.20  Aligned_cols=56  Identities=21%  Similarity=0.449  Sum_probs=43.6

Q ss_pred             cccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           3 SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         3 ~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++.....+|+|..+|.=..  ..   ....+..|+++++.|.+. |+|-|.|+|+|||.++.
T Consensus       318 G~~~~~~~v~v~a~P~w~~--~~---~d~~~~~gs~v~~eC~a~-g~P~p~v~WlkNg~pl~  373 (1051)
T KOG3513|consen  318 GSATHSGHVTVYAPPYWLQ--KP---QDTEADTGSNVTLECKAS-GKPNPTVKWLKNGEPLE  373 (1051)
T ss_pred             ccceeeEEEEEecCchhhc--cc---ceeEecCCCCeEEEEEec-CCCCCceEEeeCCeecC
Confidence            3444568899999986432  11   235788999999999995 79999999999998874

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.88  E-value=2e-05  Score=40.76  Aligned_cols=24  Identities=17%  Similarity=0.696  Sum_probs=20.6

Q ss_pred             EEEEEecCCCCCceEEEEECCEEcc
Q psy7728          40 TLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        40 ~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .|.|.+. |.|.+.++|||+++.+.
T Consensus         2 ~L~C~v~-g~P~p~v~W~k~~~~l~   25 (76)
T cd05736           2 SLRCHAE-GIPLPRLTWLKNGMDIT   25 (76)
T ss_pred             EeEeEee-ecCCCEEEEEECCEECC
Confidence            6899996 47999999999998763

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=97.85  E-value=4.4e-05  Score=41.22  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=23.5

Q ss_pred             CcEEEEEEecC-CCCCceEEEEECCEEcc
Q psy7728          37 QEITLECLVKN-AKPAAKIVWYRGNTELK   64 (65)
Q Consensus        37 ~~~~L~C~~~~-~~P~~~i~W~~~~~~l~   64 (65)
                      +++.|.|.+.. ..++..|.|++||+++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~   29 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID   29 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECc
Confidence            36789999975 56789999999999874

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.83  E-value=4.3e-05  Score=41.87  Aligned_cols=29  Identities=21%  Similarity=0.505  Sum_probs=25.0

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      .+..++|.|.+.+..|. ..|+|+|||+.+
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~   42 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA   42 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence            34668999999999887 789999999986

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.82  E-value=6.5e-05  Score=40.44  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      |.+...+.   ..+.+|++++|+|.+.  .|...+.|||+|..
T Consensus         3 P~L~a~p~---~vV~~G~~VtL~C~~~--~~~~~f~l~k~g~~   40 (91)
T cd05751           3 PSLWAEPS---SVVPLGKPVTLRCQGP--YGAVEYRLYREGST   40 (91)
T ss_pred             CEEEecCC---CccCCCCcEEEEEecC--CCCCEEEEEECCCC
Confidence            45655543   2678999999999874  67889999999874

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.81  E-value=3.7e-05  Score=40.67  Aligned_cols=31  Identities=26%  Similarity=0.593  Sum_probs=26.5

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..+..++|.|.+.+..|.. .|+|++||+.+.
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~   37 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVT   37 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEET
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceee
Confidence            3478899999999999976 799999999764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.80  E-value=0.0001  Score=40.47  Aligned_cols=30  Identities=17%  Similarity=0.386  Sum_probs=25.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +.+.+|++++|.|...+ .|.+.|.||++++
T Consensus         2 v~~~~G~~VtL~C~~s~-~~~~~i~W~~~~~   31 (94)
T cd07690           2 VLGKKGDTAELPCTASQ-KKSIQFHWKNSNQ   31 (94)
T ss_pred             eEeeCCCCEEEEEEeCC-CCCcEEEEEECCc
Confidence            35788999999999865 6899999998773

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.78  E-value=6.3e-05  Score=40.99  Aligned_cols=29  Identities=17%  Similarity=0.439  Sum_probs=24.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|.+.+ .|.+.|.||+.
T Consensus         6 ~v~v~eG~~v~L~C~~~~-~p~~~v~W~~~   34 (95)
T cd07701           6 NVTVVEGGTANLTCRVDQ-NDNTSLQWSNP   34 (95)
T ss_pred             eEEEecCCcEEEEEEEec-CCceEEEEeCC
Confidence            367899999999999865 68999999863

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00409 IG Immunoglobulin

Probab=97.77  E-value=0.00015  Score=36.51  Aligned_cols=32  Identities=28%  Similarity=0.793  Sum_probs=27.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC-CEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG-NTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~-~~~l   63 (65)
                      +.+..|+.++|.|.+.+. +.+.+.|+++ ++.+
T Consensus         4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v   36 (86)
T smart00409        4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLL   36 (86)
T ss_pred             EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEc
Confidence            467889999999999765 8899999998 7665

>smart00410 IG_like Immunoglobulin like

Probab=97.77  E-value=0.00015  Score=36.51  Aligned_cols=32  Identities=28%  Similarity=0.793  Sum_probs=27.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC-CEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG-NTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~-~~~l   63 (65)
                      +.+..|+.++|.|.+.+. +.+.+.|+++ ++.+
T Consensus         4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v   36 (86)
T smart00410        4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLL   36 (86)
T ss_pred             EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEc
Confidence            467889999999999765 8899999998 7665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.75  E-value=4.2e-05  Score=40.31  Aligned_cols=28  Identities=14%  Similarity=0.370  Sum_probs=22.9

Q ss_pred             CCcEEEEEEecCC-CCCceEEEEECCEEc
Q psy7728          36 NQEITLECLVKNA-KPAAKIVWYRGNTEL   63 (65)
Q Consensus        36 G~~~~L~C~~~~~-~P~~~i~W~~~~~~l   63 (65)
                      |+.++|.|.+.+. .|.+.|+|+++++.+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~   29 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKR   29 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence            7889999999764 289999999887643

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.74  E-value=5.5e-05  Score=41.50  Aligned_cols=32  Identities=16%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ...|...+|.|.+.+..|+ ..++|+|||+++.
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            3456677999999998875 5799999999864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.73  E-value=9.2e-05  Score=40.62  Aligned_cols=31  Identities=23%  Similarity=0.490  Sum_probs=25.5

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..|+..+|.|.+.+..|. ..++|.|||+++.
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~   44 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVT   44 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence            345667999999999885 5799999999863

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.69  E-value=0.00023  Score=39.40  Aligned_cols=33  Identities=15%  Similarity=0.382  Sum_probs=27.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.+.|.|.+.+..||..|.|.+++..+
T Consensus        11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i   43 (98)
T cd05898          11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKENVL   43 (98)
T ss_pred             EEEeCCCcEEEEEEEccCCCCcEEEEEEccccc
Confidence            578899999999999765555678999987765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.66  E-value=7.9e-05  Score=41.12  Aligned_cols=30  Identities=23%  Similarity=0.451  Sum_probs=24.6

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+...+|.|.+.+..|. ..++|.|||+.+.
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            35668999999998875 5699999999853

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.66  E-value=0.00012  Score=40.21  Aligned_cols=30  Identities=33%  Similarity=0.749  Sum_probs=24.2

Q ss_pred             eecCCcEEEEEEecCC-CCC-ceEEEEECCEE
Q psy7728          33 IRENQEITLECLVKNA-KPA-AKIVWYRGNTE   62 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~-~P~-~~i~W~~~~~~   62 (65)
                      +..|+..+|+|.+.+. .|+ ..++|+|||+.
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence            4557889999999999 654 67999999743

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.63  E-value=4.6e-05  Score=39.73  Aligned_cols=21  Identities=33%  Similarity=0.781  Sum_probs=17.9

Q ss_pred             EEEEEEecCCCCCceEEEEECC
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      ++|.|.+. |+|.|.|+|||++
T Consensus         1 v~l~C~~~-G~P~P~v~W~~~~   21 (79)
T cd05734           1 VTLNCSAE-GYPPPTIVWKHSK   21 (79)
T ss_pred             CEeEeeCe-EeCCCEEEEEECC
Confidence            47999985 5899999999974

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.58  E-value=0.00015  Score=38.50  Aligned_cols=25  Identities=20%  Similarity=0.550  Sum_probs=21.9

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      |++++|+|.+.+ +|.+.+.|++.++
T Consensus         1 Ge~~~l~C~~~~-~~~~~~~W~~~~~   25 (84)
T cd05861           1 GETITVNCIVQG-NEVVDFSWTYPGK   25 (84)
T ss_pred             CCcEEEEEEEEC-CCccEEEEEECCc
Confidence            789999999965 7899999998775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.57  E-value=0.00019  Score=38.88  Aligned_cols=28  Identities=32%  Similarity=0.491  Sum_probs=23.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+...+|+.++|.|.. + .|.+.|+|||+
T Consensus         5 ~~~~~eG~~v~L~C~~-~-~p~p~v~Wykq   32 (91)
T cd05871           5 VVYGVENNSTFLECLP-K-SPQASVKWLFQ   32 (91)
T ss_pred             EEEEecCCcEEEEEEC-C-CCCceEEEEEE
Confidence            3567899999999996 3 68899999984

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG4221|consensus

Probab=97.57  E-value=0.00021  Score=53.43  Aligned_cols=51  Identities=24%  Similarity=0.569  Sum_probs=41.2

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.|+|++||.-+     ..+..+...++..+.+.|.+.+ +|.+.+.|||||..+
T Consensus       319 asaev~V~a~P~~~-----~~p~~l~A~e~~die~ec~~~g-~p~p~v~w~kNgd~~  369 (1381)
T KOG4221|consen  319 ASAEVTVLAPPGFT-----KAPTTLVAHESMDIEFECPVSG-KPIPTVRWYKNGDRI  369 (1381)
T ss_pred             cceEEEEEcCCCCC-----CCCcceeeeeccceeEeCCCCC-CCcceEEEEecCccc
Confidence            46899999998643     2334567888999999999955 699999999999765

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.56  E-value=0.00016  Score=39.15  Aligned_cols=32  Identities=22%  Similarity=0.460  Sum_probs=27.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+..|+.+.|.|..++  +.|.+.|++||..+.
T Consensus         6 ~tv~~g~~v~L~C~~~s--~~A~v~W~~ng~~l~   37 (85)
T cd05872           6 RTVAPGADVVLPCQLRS--NLASPVWLFNGTPLN   37 (85)
T ss_pred             EEEecCCCEEEECCCCC--CCccEEEEECCcccC
Confidence            57899999999999854  477999999998763

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.51  E-value=0.00029  Score=38.84  Aligned_cols=29  Identities=24%  Similarity=0.517  Sum_probs=24.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+  +...+.|||..
T Consensus         7 ~~~v~~G~~v~l~C~~~~--~~~~v~Wykq~   35 (110)
T cd05899           7 YLIKGRGQSVTLRCSQTS--GHDNMYWYRQD   35 (110)
T ss_pred             ceEEcCCCcEEEEEEECC--CCCEEEEEEEC
Confidence            357899999999999865  67889999963

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.47  E-value=0.0005  Score=37.31  Aligned_cols=38  Identities=18%  Similarity=0.377  Sum_probs=27.7

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      |.|...+.   ..+.+|++++|.|++..  +.-.+.|||+|..
T Consensus         2 P~l~a~p~---~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~   39 (94)
T cd05711           2 PFLSAHPS---PVVPSGENVTLQCHSDI--RFDRFILYKEGRS   39 (94)
T ss_pred             CEEEecCC---CccCCCCeEEEEEecCC--CCCEEEEEECCCC
Confidence            34544443   26789999999998743  5678999998853

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>KOG4194|consensus

Probab=97.45  E-value=0.00021  Score=50.85  Aligned_cols=56  Identities=16%  Similarity=0.386  Sum_probs=42.5

Q ss_pred             cccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           3 SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         3 ~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |+.+..+.|+|+.-|+. .+.-    +...+..|+++.|.|.+.+.++.|.+.|||+++++
T Consensus       693 G~isanAtL~V~e~p~f-~~PL----~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pi  748 (873)
T KOG4194|consen  693 GQISANATLTVLETPSF-SIPL----EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPI  748 (873)
T ss_pred             cceeeceEEEEecCCcc-cccc----cceEEEecceEEEEEecCCCCCCccccccCCCCce
Confidence            56667799999988764 2221    22478889999999999665444999999999876

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.43  E-value=0.00032  Score=38.45  Aligned_cols=28  Identities=25%  Similarity=0.623  Sum_probs=23.6

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTE   62 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~   62 (65)
                      .++.++|.|.+.+..|. ..|+|+|||++
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            35668999999998886 56999999986

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.36  E-value=0.00063  Score=37.10  Aligned_cols=30  Identities=23%  Similarity=0.607  Sum_probs=25.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|..... +...+.|||..
T Consensus         7 ~v~~~~G~~v~L~C~~~~~-~~~~v~W~k~~   36 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTS-TFYYLFWYRQY   36 (109)
T ss_pred             ceEEcCCCCEEEEEEECCC-CccEEEEEEEC
Confidence            3578999999999998654 78899999853

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4194|consensus

Probab=97.35  E-value=0.00041  Score=49.45  Aligned_cols=54  Identities=24%  Similarity=0.462  Sum_probs=44.2

Q ss_pred             CcccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728           2 LSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus         2 ~~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      =|-|+..++|+|...|+-..     .++.+++..|+...|.|.+. |.|.|+|.|-|+|.
T Consensus       598 GStysqk~KltV~~~PsFtk-----tP~dltl~tg~mArl~CaAt-G~P~PeIawqkdgg  651 (873)
T KOG4194|consen  598 GSTYSQKAKLTVNQAPSFTK-----TPEDLTLRTGQMARLECAAT-GHPRPEIAWQKDGG  651 (873)
T ss_pred             CcchhheeEEEeeccCcccc-----Ccccceeecccceeeeeecc-CCCCcceeehhcCC
Confidence            36688899999999986532     23457899999999999995 58999999999874

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.35  E-value=0.00065  Score=37.21  Aligned_cols=30  Identities=13%  Similarity=0.520  Sum_probs=23.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+......+.|||.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            357899999999999864333678999985

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.34  E-value=0.00068  Score=36.39  Aligned_cols=28  Identities=29%  Similarity=0.584  Sum_probs=23.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      .+.+.+|++++|.|.+.+ .|.+.+.||+
T Consensus         6 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~~   33 (95)
T cd05717           6 DVTVVEGGTATLKCRVKN-NDNSSLQWSN   33 (95)
T ss_pred             cEEEcCCCCEEEEEEECC-CCCceEEEeC
Confidence            357899999999999855 5788999986

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.23  E-value=0.0008  Score=45.85  Aligned_cols=53  Identities=34%  Similarity=0.661  Sum_probs=41.5

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l   63 (65)
                      +++..+.++.+-+|+. .+.  ..    ++.+|+....+|.+.+-.|+  ..++||+||.++
T Consensus       209 ~~~~~VtV~~yr~Psv-sv~--~~----PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V  263 (466)
T PHA03270        209 RYGTWTRVRMFRRPSL-SIR--PH----AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEV  263 (466)
T ss_pred             eeeeEEEEEEecCCcc-ccc--CC----ccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence            4556677777888863 332  33    68999999999999998887  469999999876

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.19  E-value=0.0014  Score=36.31  Aligned_cols=30  Identities=30%  Similarity=0.592  Sum_probs=24.9

Q ss_pred             eEEeecCCcEEEEEEecCC-CCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNA-KPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+. .+...+.|||.
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            4578899999999998652 57889999995

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.15  E-value=0.001  Score=36.67  Aligned_cols=29  Identities=24%  Similarity=0.527  Sum_probs=22.8

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+|++++|+|...+......+.|||..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~   30 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWR   30 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence            57899999999988654445689999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.15  E-value=0.00092  Score=33.31  Aligned_cols=19  Identities=37%  Similarity=0.943  Sum_probs=17.4

Q ss_pred             EEEEEEecCCCCCceEEEE
Q psy7728          39 ITLECLVKNAKPAAKIVWY   57 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~   57 (65)
                      ++|+|.+.++.|.+.++|+
T Consensus        18 ~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE
Confidence            9999999887669999999

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.05  E-value=0.00052  Score=37.81  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=25.6

Q ss_pred             EeecCCcEEEEEEecC----CCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKN----AKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~----~~P~~~i~W~~~~~~l~   64 (65)
                      .+..|....|+|.-..    .++.+.|+||||++++.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~   42 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD   42 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECc
Confidence            4677889999996321    35788999999999874

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.01  E-value=0.0024  Score=35.46  Aligned_cols=30  Identities=23%  Similarity=0.595  Sum_probs=24.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|..........+.|||.
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            457899999999999765445678999994

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.99  E-value=0.0016  Score=35.02  Aligned_cols=29  Identities=28%  Similarity=0.621  Sum_probs=23.4

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+|+.++|.|......+...+.|||..
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~   30 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK   30 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence            46789999999998654367789999954

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=96.97  E-value=0.0022  Score=35.86  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCce-EEEEECCEEc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAK-IVWYRGNTEL   63 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~l   63 (65)
                      ..+.+.+|+.+.|.|.. .+.|++. +.|.+++..+
T Consensus        11 ~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l   45 (101)
T cd05860          11 TTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTL   45 (101)
T ss_pred             ceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCccc
Confidence            34689999999999998 5689987 9999998754

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.92  E-value=0.0023  Score=44.39  Aligned_cols=51  Identities=12%  Similarity=0.291  Sum_probs=38.8

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK   64 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~   64 (65)
                      ..+.+.++-+|+ ..+.  ..    ++.+|+....+|.+.+-.|+  ..++||+||.++.
T Consensus       320 ~~VtV~~yr~Ps-VsV~--p~----PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~  372 (566)
T PHA03269        320 HHITVMSYKRPN-ITVI--GD----PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG  372 (566)
T ss_pred             eEEEEEEecCCC-cccc--CC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence            456677777883 3333  33    68999999999999988887  4699999988763

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.91  E-value=0.0016  Score=35.16  Aligned_cols=29  Identities=14%  Similarity=0.483  Sum_probs=22.3

Q ss_pred             EeecCCcEEEEEEecCC-CCCceEEEEECC
Q psy7728          32 EIRENQEITLECLVKNA-KPAAKIVWYRGN   60 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~   60 (65)
                      .+.+|++++|.|..... .....|.|||..
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~   31 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQK   31 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence            47889999999987543 145679999953

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.89  E-value=0.0031  Score=43.08  Aligned_cols=50  Identities=12%  Similarity=0.375  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK   64 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~   64 (65)
                      +.+.|.+.|....+.  +.    ++.+|+....+|.+.+-.|+  ..++||+||.++.
T Consensus       239 ~~~~v~~RPPsVsV~--a~----PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~  290 (490)
T PHA03271        239 IYIRVCQRPASVDVL--AP----PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIAT  290 (490)
T ss_pred             EEEEEEecCCCcccc--CC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence            455566655443443  33    68999999999999998887  4699999998763

>KOG3513|consensus

Probab=96.89  E-value=0.003  Score=46.95  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=37.9

Q ss_pred             cccCCCEEEEEE-------cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728           3 SRYGPRTRLYQF-------APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus         3 ~~~~~~~~L~V~-------~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +.++..+.|.|.       .+|.   |.... +.......|+.+.|.|.+. |+|.|+|.|.|.|.
T Consensus       220 ~v~~~~~~L~~~~~~~~~~~~P~---i~~~~-p~~~~a~~G~~v~LECfA~-G~P~P~i~W~k~~g  280 (1051)
T KOG3513|consen  220 IVQGPPFPLIVRSNNVMREYAPK---ILVPF-PETETALKGQSVKLECFAL-GNPTPQIKWRKVDG  280 (1051)
T ss_pred             cccCCceeEEEcccccccccCCc---cccCC-CCcccccCCCeEEEEEEec-CCCCCcEEEEeCCC
Confidence            346677777772       3443   22111 1245788999999999994 58999999999875

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.86  E-value=0.0032  Score=43.31  Aligned_cols=49  Identities=16%  Similarity=0.421  Sum_probs=36.8

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK   64 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~   64 (65)
                      +.+..+-+|+. .+  .+.    ++.+|+....+|.+.+-.|+  ..++||+||.++.
T Consensus       230 VtV~~yr~Psv-sv--~~~----PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~  280 (486)
T PHA03273        230 VTVSTYNAPLV-DL--SVH----PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD  280 (486)
T ss_pred             EEEEEecCCcc-cc--cCC----ccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence            33444667752 33  333    68999999999999988887  5699999999864

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.83  E-value=0.0023  Score=35.55  Aligned_cols=29  Identities=17%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             ecCCcEEEEEEecCCC-CC-ceEEEEECCEE
Q psy7728          34 RENQEITLECLVKNAK-PA-AKIVWYRGNTE   62 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~-P~-~~i~W~~~~~~   62 (65)
                      ..+..++|+|.+.+.. |. ..++|+++|+.
T Consensus        17 ~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          17 LLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            3567889999999988 74 67999999874

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.82  E-value=0.00091  Score=34.72  Aligned_cols=28  Identities=14%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      ..|.+|+|+|-...    ..|.|++|++.+.|
T Consensus         5 isGTtVtlTCP~~~----~~i~W~~n~~~~~g   32 (65)
T cd07692           5 ISGTTVTVTCPLSG----DDIKWKKNDQVSQG   32 (65)
T ss_pred             EeccEEEEECCCCC----CCceEEeCCccCCC
Confidence            35889999996532    23999999877654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.75  E-value=0.0028  Score=34.67  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=23.9

Q ss_pred             EeecCCcEEEEEEecC-CCCCceEEEEECCE
Q psy7728          32 EIRENQEITLECLVKN-AKPAAKIVWYRGNT   61 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~-~~P~~~i~W~~~~~   61 (65)
                      .+..|+.++|+|.+.. +.|.+.|+|+--+.
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n   40 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGN   40 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCC
Confidence            5788999999999954 46677999997543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.61  E-value=0.0049  Score=33.12  Aligned_cols=30  Identities=10%  Similarity=0.217  Sum_probs=24.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      +.+.+|++++|.|..........+.|||..
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~   31 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG   31 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence            467899999999987554567789999974

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=96.53  E-value=0.0045  Score=34.81  Aligned_cols=32  Identities=13%  Similarity=0.482  Sum_probs=23.3

Q ss_pred             eEEeecCCcEEEEEEecC----------CCCCceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKN----------AKPAAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~----------~~P~~~i~W~~~~~   61 (65)
                      ...+.+|+.+.|.|-.-.          ..+..+|+|||++.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~   50 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSG   50 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCC
Confidence            357899999999997511          11245899999964

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.52  E-value=0.0084  Score=32.94  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=23.6

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +.+.+|++++|+|.+.+. ....+.||+-++
T Consensus         7 vtv~~G~ta~L~C~v~~~-~~~~v~w~~~~~   36 (95)
T cd05881           7 VTVVEGEVAIISCRVKNN-DDSVIQLLNPNR   36 (95)
T ss_pred             eEEcCCCcEEEEEEEccC-CccEEEEEecCC
Confidence            578999999999999764 456678887653

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>KOG3515|consensus

Probab=96.50  E-value=0.002  Score=46.42  Aligned_cols=47  Identities=28%  Similarity=0.550  Sum_probs=35.1

Q ss_pred             cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        15 ~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+..++.+.+.+.  .-.+.+|+.+.|.|.+.+++|.++++||++.+..
T Consensus       202 ~~~~~~~~~~~~~--~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~  248 (741)
T KOG3515|consen  202 APCKGIGITGAQE--QQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQ  248 (741)
T ss_pred             cccccceecchhh--cCcccccceEEEEehhhcCCcchhhhhccccccc
Confidence            3444444443322  1368899999999999999999999999998764

>cd00096 Ig Immunoglobulin domain

Probab=96.43  E-value=0.0073  Score=28.40  Aligned_cols=24  Identities=33%  Similarity=0.814  Sum_probs=20.1

Q ss_pred             EEEEEEecCCCCCceEEEEECCEEc
Q psy7728          39 ITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        39 ~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ++|.|.+.+ .|...+.|++++...
T Consensus         1 ~~l~C~~~~-~~~~~~~W~~~~~~~   24 (74)
T cd00096           1 VTLTCLASG-PPPPTITWLKNGKPL   24 (74)
T ss_pred             CEEEEEecC-CCCCcEEEEECCEEC
Confidence            378999977 789999999998653

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02785 IL-beta-binding protein; Provisional

Probab=96.37  E-value=0.0035  Score=40.87  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             EeecCCcEEEEEEec----CCCCCceEEEEECCE
Q psy7728          32 EIRENQEITLECLVK----NAKPAAKIVWYRGNT   61 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~----~~~P~~~i~W~~~~~   61 (65)
                      ...+|+.+.|.|...    .+.|.++|+|||+|.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~   70 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGA   70 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCC
Confidence            467899999999862    567899999999975

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.37  E-value=0.0052  Score=34.19  Aligned_cols=19  Identities=26%  Similarity=0.662  Sum_probs=16.9

Q ss_pred             EEEEEecCCCCCceEEEEE
Q psy7728          40 TLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        40 ~L~C~~~~~~P~~~i~W~~   58 (65)
                      ...|.+.+|+|++.|+|.-
T Consensus        24 VA~CiSa~GrPpa~ItW~t   42 (98)
T cd05890          24 VATCVSANGKPPSVVRWDT   42 (98)
T ss_pred             EEEEEcCCCcCCcEeEEEc
Confidence            3599999999999999974

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=96.34  E-value=0.014  Score=32.51  Aligned_cols=30  Identities=13%  Similarity=0.473  Sum_probs=22.1

Q ss_pred             eEEeecCCcEEEEEEecCCCC---CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP---AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|......+   ...|.||+.
T Consensus         7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~   39 (116)
T cd05715           7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ   39 (116)
T ss_pred             eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence            357889999999998754332   246999873

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=96.23  E-value=0.05  Score=29.06  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=25.2

Q ss_pred             EEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          10 RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        10 ~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .|.+..|+....+...+.     ..+..  .|.+.+.++.+  .+.||.||+.+
T Consensus        10 ~l~I~~P~~g~~~~~~~~-----~~~~~--~l~l~a~~~~~--~~~W~vdg~~~   54 (89)
T PF06832_consen   10 PLRITSPPDGAVLALDPG-----IPERQ--PLVLKAAGGRG--PVYWFVDGEPL   54 (89)
T ss_pred             CCEEEecCCCCEEEeCCC-----CCccc--eEEEEEeCCCC--cEEEEECCEEc
Confidence            455666665544432221     01234  44445545533  99999999987

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.21  E-value=0.013  Score=36.10  Aligned_cols=32  Identities=22%  Similarity=0.484  Sum_probs=25.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      .+.+.+|++++|.|.-..+.....++|+|..+
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~   55 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNK   55 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCC
Confidence            35789999999999975455678899999753

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=96.21  E-value=0.0062  Score=32.06  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             CCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      |++++|.|.... .+...|.||++..
T Consensus         1 G~~VtL~c~~~~-~~~~~i~W~~~~~   25 (92)
T cd05741           1 GESVTLPVSNLP-ENLQEITWYKGKD   25 (92)
T ss_pred             CCcEEEEcccCC-CCCEEEEEECCCC
Confidence            789999998765 5677999999864

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=96.19  E-value=0.012  Score=31.33  Aligned_cols=27  Identities=11%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             CCcEEEEEEecCC-CCCceEEEEECCEE
Q psy7728          36 NQEITLECLVKNA-KPAAKIVWYRGNTE   62 (65)
Q Consensus        36 G~~~~L~C~~~~~-~P~~~i~W~~~~~~   62 (65)
                      |++++|+|.+.+. .|...+.|...++.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~   28 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKK   28 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence            7889999999743 56678999987753

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.07  E-value=0.021  Score=32.05  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=22.3

Q ss_pred             EEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      +.+.+|++++|.|...+.. -...+.|||.
T Consensus         7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ   36 (117)
T cd04981           7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQ   36 (117)
T ss_pred             eEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence            5789999999999875432 2456999995

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.00  E-value=0.022  Score=30.41  Aligned_cols=30  Identities=23%  Similarity=0.670  Sum_probs=24.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|..........+.||+.
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~   39 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQ   39 (114)
T ss_dssp             EEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred             eEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence            357899999999999872235678999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.00  E-value=0.015  Score=31.96  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=21.5

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+|+.++|+|..... -...+.|||..
T Consensus         2 ~v~~G~~vtL~C~~~~~-~~~~v~Wyrq~   29 (104)
T cd05720           2 DAELGQKVELKCEVLNS-SPTGCSWLFQP   29 (104)
T ss_pred             cccCCCeEEEEEEecCC-CCCcEEEEEeC
Confidence            36789999999987543 34569999964

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=95.95  E-value=0.028  Score=31.43  Aligned_cols=29  Identities=21%  Similarity=0.554  Sum_probs=21.5

Q ss_pred             eEEeecCCcEEEEEEecCCCC---CceEEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKP---AAKIVWYR   58 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~   58 (65)
                      .+.+.+|+.++|.|.-....+   ...|.||+
T Consensus         7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            467899999999998644322   23699985

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>KOG4222|consensus

Probab=95.92  E-value=0.016  Score=43.64  Aligned_cols=56  Identities=16%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             CCcccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728           1 MLSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus         1 ~~~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +++..+..+.|+|.+||+-..=. ...    .+.-|..++|.|.+.+ +|++.+.|.|.|..
T Consensus       300 ~vG~l~asa~ltV~apP~f~kkp-~dq----~v~lg~~vt~pc~~~g-nP~PavfW~keg~q  355 (1281)
T KOG4222|consen  300 LVGGLEASATLTVQAPPSFGKKP-RDQ----KVALGGTVTFPCETLG-NPPPAVFWLKEGSQ  355 (1281)
T ss_pred             cccccccccceEEecCccccccc-Ccc----ccccCceEEeeeecCC-CCCcceEEeccCcc
Confidence            45667788999999999743211 111    4566889999999964 79999999998754

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=95.89  E-value=0.019  Score=31.18  Aligned_cols=26  Identities=15%  Similarity=0.387  Sum_probs=19.1

Q ss_pred             cCCcEEEEEEecCC-----CCCceEEEEECC
Q psy7728          35 ENQEITLECLVKNA-----KPAAKIVWYRGN   60 (65)
Q Consensus        35 ~G~~~~L~C~~~~~-----~P~~~i~W~~~~   60 (65)
                      .|++++|.|.....     .....|.|||..
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~   31 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE   31 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence            48999999986543     234579999964

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=95.88  E-value=0.022  Score=31.71  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+|+.+.|.|.-.. .+...|+|||+
T Consensus         9 ~~~~G~~V~L~v~~~p-~~~~~~~W~kg   35 (105)
T cd05774           9 QVAEGENVLLLVHNLP-ENLLAYAWYKG   35 (105)
T ss_pred             cccCCCCEEEEecCCC-CCceEEEEEcC
Confidence            5788999999997522 34458999997

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=95.76  E-value=0.02  Score=35.89  Aligned_cols=33  Identities=15%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             eEEeecCCcEEEEEEecCCC----------CCceEEEEECCEE
Q psy7728          30 KIEIRENQEITLECLVKNAK----------PAAKIVWYRGNTE   62 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~----------P~~~i~W~~~~~~   62 (65)
                      .+.+.+|+++.|.|.+.+..          ....+.|+|++..
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~   73 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSL   73 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeE
Confidence            35789999999999985521          2458999999854

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=95.45  E-value=0.014  Score=31.65  Aligned_cols=27  Identities=15%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      .|++|+|.|..........|.||++..
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~   29 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTS   29 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCE
Confidence            589999999775434567899998753

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=95.02  E-value=0.1  Score=29.15  Aligned_cols=32  Identities=16%  Similarity=0.547  Sum_probs=22.6

Q ss_pred             CeEEeecCCcEEEEEEecCCC----C-CceEEEEECC
Q psy7728          29 SKIEIRENQEITLECLVKNAK----P-AAKIVWYRGN   60 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~----P-~~~i~W~~~~   60 (65)
                      ..+.+.+|+.++|.|.-....    + ...+.|||..
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~   43 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH   43 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence            346789999999999643221    1 3569999964

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=94.83  E-value=0.039  Score=29.29  Aligned_cols=24  Identities=21%  Similarity=0.527  Sum_probs=17.7

Q ss_pred             CcEEEEEEecCCC--CCceEEEEECC
Q psy7728          37 QEITLECLVKNAK--PAAKIVWYRGN   60 (65)
Q Consensus        37 ~~~~L~C~~~~~~--P~~~i~W~~~~   60 (65)
                      ++++|.|......  ....|.|||..
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~   26 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKIT   26 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeEC
Confidence            4689999876543  34579999964

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=94.73  E-value=0.059  Score=28.98  Aligned_cols=24  Identities=17%  Similarity=0.455  Sum_probs=17.5

Q ss_pred             CCcEEEEEEecCCCCCceEEEEEC
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      |++++|.|.-......-.|.|+|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~   24 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKI   24 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEc
Confidence            788999998543333347999985

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>KOG4222|consensus

Probab=94.33  E-value=0.047  Score=41.33  Aligned_cols=56  Identities=14%  Similarity=0.285  Sum_probs=43.4

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +++.+.|.|.+-+++-.+....    +.+..|+.+.|.|.-..+.|.+.++|.|+|+++.
T Consensus       119 vSr~a~L~vavlrddfrv~prd----~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~  174 (1281)
T KOG4222|consen  119 VSRGASLIVAVLRDDFRVSPRD----VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD  174 (1281)
T ss_pred             eecCceEEEEEechhcccCccc----ccccccceeEEeccCCCCCCCCcceeecCCCccc
Confidence            3556778887777665443222    4678899999999999999999999999998863

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=94.29  E-value=0.11  Score=28.22  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             CCcEEEEEEecCCC-----CCceEEEEEC
Q psy7728          36 NQEITLECLVKNAK-----PAAKIVWYRG   59 (65)
Q Consensus        36 G~~~~L~C~~~~~~-----P~~~i~W~~~   59 (65)
                      |+.++|.|.-....     -...|.|+|.
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~   30 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKL   30 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence            88999999875432     2568999997

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=94.12  E-value=0.055  Score=28.37  Aligned_cols=19  Identities=32%  Similarity=0.728  Sum_probs=14.6

Q ss_pred             CcEEEEEEecCCCCCceEEEEECC
Q psy7728          37 QEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        37 ~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      +.|.|+|.+     ..+|+||++.
T Consensus         7 ~~V~L~C~~-----~tsi~W~kG~   25 (69)
T cd07691           7 GKVFLKCNG-----ATNITWKKGK   25 (69)
T ss_pred             ceEEEEecC-----CCcEEEecCc
Confidence            568999965     3679999943

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=94.10  E-value=0.11  Score=29.19  Aligned_cols=24  Identities=13%  Similarity=0.409  Sum_probs=18.5

Q ss_pred             CCcEEEEEEecCCCC-----------CceEEEEEC
Q psy7728          36 NQEITLECLVKNAKP-----------AAKIVWYRG   59 (65)
Q Consensus        36 G~~~~L~C~~~~~~P-----------~~~i~W~~~   59 (65)
                      |++++|.|.-....+           ...|.|||.
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~   36 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI   36 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence            889999998765432           358999984

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=94.10  E-value=0.12  Score=28.71  Aligned_cols=24  Identities=17%  Similarity=0.450  Sum_probs=18.4

Q ss_pred             CCcEEEEEEecCCCC---------CceEEEEEC
Q psy7728          36 NQEITLECLVKNAKP---------AAKIVWYRG   59 (65)
Q Consensus        36 G~~~~L~C~~~~~~P---------~~~i~W~~~   59 (65)
                      |+.++|.|.-....+         ...|.|||.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~   34 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL   34 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence            789999998865432         367999995

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=93.85  E-value=0.17  Score=27.03  Aligned_cols=25  Identities=20%  Similarity=0.610  Sum_probs=16.9

Q ss_pred             CCcEEEEEEecCCCCC--ceEEEEECC
Q psy7728          36 NQEITLECLVKNAKPA--AKIVWYRGN   60 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~--~~i~W~~~~   60 (65)
                      |++++|.|........  ..|.|||..
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~   27 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQ   27 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence            6889999987533221  358898864

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=93.60  E-value=0.28  Score=27.67  Aligned_cols=26  Identities=15%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             EEeecCCcEEEEEEecCCC---CCceEEE
Q psy7728          31 IEIRENQEITLECLVKNAK---PAAKIVW   56 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~---P~~~i~W   56 (65)
                      +.+..|+.++|.|.-....   +..+|+|
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W   36 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTW   36 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEE
Confidence            4678899999999986532   3468999

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=93.00  E-value=0.36  Score=27.59  Aligned_cols=29  Identities=14%  Similarity=0.174  Sum_probs=22.1

Q ss_pred             EEeecCCcEEEEEEecCC-CCC-ceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNA-KPA-AKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~-~P~-~~i~W~~~   59 (65)
                      +.+..|..++|+|...+. ... -.++|+|+
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq   38 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKG   38 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence            467788899999998663 333 47999986

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.43  E-value=0.68  Score=25.11  Aligned_cols=33  Identities=21%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             EeecCCcEEEEEEecCCC----CCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAK----PAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~----P~~~i~W~~~~~~l~   64 (65)
                      .+.-|++++.+|....+-    .+..|-|..|+..+.
T Consensus        14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP   50 (89)
T PF06328_consen   14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP   50 (89)
T ss_dssp             EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST
T ss_pred             EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC
Confidence            467899999999988653    567899999887653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03052 Hypothetical protein; Provisional

Probab=91.93  E-value=0.81  Score=23.96  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=26.1

Q ss_pred             EEeecCCcEEEEEEecCCCC--CceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKP--AAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P--~~~i~W~~~~~~l   63 (65)
                      +.+.-|+.+++.|.+.-++|  .+.+.|--|+..+
T Consensus         7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            56778999999999986654  4678898888665

>smart00406 IGv Immunoglobulin V-Type

Probab=91.83  E-value=0.37  Score=24.09  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=16.1

Q ss_pred             cEEEEEEecCCCCC-ceEEEEECC
Q psy7728          38 EITLECLVKNAKPA-AKIVWYRGN   60 (65)
Q Consensus        38 ~~~L~C~~~~~~P~-~~i~W~~~~   60 (65)
                      +++|.|........ ..+.||+..
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~   24 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQP   24 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeC
Confidence            47899988654322 479999964

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=91.19  E-value=0.23  Score=33.17  Aligned_cols=22  Identities=27%  Similarity=0.626  Sum_probs=19.5

Q ss_pred             cEEEEEEecCCCCCc-eEEEEEC
Q psy7728          38 EITLECLVKNAKPAA-KIVWYRG   59 (65)
Q Consensus        38 ~~~L~C~~~~~~P~~-~i~W~~~   59 (65)
                      .++|+|.+.+..|.. .|+|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            579999999999874 6999999

>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1)

Probab=90.58  E-value=0.33  Score=27.26  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             EeecCCcEEEEEEecCCCCC----ceEEEEECCEEccC
Q psy7728          32 EIRENQEITLECLVKNAKPA----AKIVWYRGNTELKL   65 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~----~~i~W~~~~~~l~~   65 (65)
                      .+..|...++.|++.+-.|+    -+++|+.+++++.|
T Consensus        12 ~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg   49 (110)
T PF09085_consen   12 ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG   49 (110)
T ss_dssp             SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred             HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence            46788888999998765553    36999999999876

These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.

>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines

Probab=89.74  E-value=0.19  Score=26.26  Aligned_cols=21  Identities=43%  Similarity=0.828  Sum_probs=14.9

Q ss_pred             EEEEEecCCCCCceEEEEECCEEc
Q psy7728          40 TLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        40 ~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +|+|-+..+-|   |+||-||..+
T Consensus         2 tltC~s~~sLP---iswYcN~TRL   22 (71)
T PF11049_consen    2 TLTCPSNASLP---ISWYCNGTRL   22 (71)
T ss_pred             ceecCCCCCCc---ccEEECCcee
Confidence            68887754444   7899988654

This domain would appear to be the cytoplasmic region of the protein [].

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=88.05  E-value=0.93  Score=24.77  Aligned_cols=23  Identities=17%  Similarity=0.557  Sum_probs=18.0

Q ss_pred             CcEEEEEEecCCCCCceEEEEEC
Q psy7728          37 QEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        37 ~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +.++|.|.........+++|.|-
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~   23 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKH   23 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEc
Confidence            36899999865556788999985

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=86.51  E-value=1.3  Score=24.19  Aligned_cols=23  Identities=17%  Similarity=0.495  Sum_probs=17.7

Q ss_pred             CcEEEEEEecCCCCCceEEEEEC
Q psy7728          37 QEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        37 ~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ++++|.|+-.......+++|.|-
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~   23 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKI   23 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEc
Confidence            46899999865556678999884

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA03112 IL-18 binding protein; Provisional

Probab=85.22  E-value=2  Score=25.50  Aligned_cols=30  Identities=30%  Similarity=0.582  Sum_probs=24.2

Q ss_pred             EEeecCCcEEEEEEecCCCCC-ceEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPA-AKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~   60 (65)
                      ++..+++++.|+|.+.+-.|. .-+-|.+++
T Consensus        33 vp~k~~~~vvL~C~gcs~fp~fS~lYWl~gn   63 (141)
T PHA03112         33 IPTKETEKVVLECRGCSYFPKFSYVYWLIGN   63 (141)
T ss_pred             cccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence            356789999999999855576 779999776

>KOG1480|consensus

Probab=83.84  E-value=0.29  Score=36.05  Aligned_cols=32  Identities=22%  Similarity=0.613  Sum_probs=28.2

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.++..+.|.|+...+.|++.+.||+|+..+
T Consensus       140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~  171 (909)
T KOG1480|consen  140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI  171 (909)
T ss_pred             eecccccccccccCcccchhhhhhccccCCCC
Confidence            57778889999999999999999999998654

>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=83.10  E-value=1.9  Score=22.11  Aligned_cols=20  Identities=25%  Similarity=0.707  Sum_probs=13.8

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEE
Q psy7728          33 IRENQEITLECLVKNAKPAAKIVWY   57 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~~i~W~   57 (65)
                      +..|++++|.     |.|...++||
T Consensus         2 v~~G~N~TL~-----Gp~~~~V~Wy   21 (63)
T PF02440_consen    2 VTVGSNVTLV-----GPPDGPVTWY   21 (63)
T ss_pred             EeEcCcEEEe-----CCCCCceEEE
Confidence            3567888883     3456779998

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=83.01  E-value=3.1  Score=22.39  Aligned_cols=22  Identities=18%  Similarity=0.549  Sum_probs=15.3

Q ss_pred             cEEEEEEecCCCC--CceEEEEEC
Q psy7728          38 EITLECLVKNAKP--AAKIVWYRG   59 (65)
Q Consensus        38 ~~~L~C~~~~~~P--~~~i~W~~~   59 (65)
                      +++|.|.-....+  ...|.|+|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~   25 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRE   25 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEc
Confidence            5799998754321  348999994

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=80.14  E-value=4.4  Score=22.61  Aligned_cols=24  Identities=17%  Similarity=0.455  Sum_probs=16.4

Q ss_pred             CCcEEEEEEecCC------CCCceEEEEEC
Q psy7728          36 NQEITLECLVKNA------KPAAKIVWYRG   59 (65)
Q Consensus        36 G~~~~L~C~~~~~------~P~~~i~W~~~   59 (65)
                      |.+++|.|.-.-.      ...+.|.|+|.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~   31 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL   31 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence            6788999984321      12368999985

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa

Probab=80.03  E-value=0.47  Score=27.81  Aligned_cols=11  Identities=18%  Similarity=0.598  Sum_probs=9.3

Q ss_pred             CCceEEEEECC
Q psy7728          50 PAAKIVWYRGN   60 (65)
Q Consensus        50 P~~~i~W~~~~   60 (65)
                      -+..++||+||
T Consensus        98 GAssYRWFHdg  108 (132)
T PF04668_consen   98 GASSYRWFHDG  108 (132)
T ss_pred             Ccccceeeccc
Confidence            37889999997

Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-11
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	3e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-07
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	8e-05
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	2e-06
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	5e-06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	8e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-05
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-05
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	9e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-04
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-04
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-04
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-04

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 54.0 bits (129), Expect = 7e-11
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 6   GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
               RL  FA P + E+  +     +   ++ +    C  +N  PA KI WYR    L+
Sbjct: 105 EATARLNVFAKPEATEVSPNKGTLSVM-EDSAQEIATCNSRNGNPAPKITWYRNGQRLE 162

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 43.9 bits (103), Expect = 3e-07
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 14  FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
           F  P  +E++  P          +  TL C V  A P A   +   RG  EL 
Sbjct: 86  FQRPDRVELMPLPPW----QPVGENFTLSCRVPGAGPRASLTLTLLRGAQELI 134

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.1 bits (103), Expect = 3e-07
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 8   RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK 64
           +T L  +  P  +E+   PS         + +TL C V+   P A   +V  RG  ELK
Sbjct: 77  KTFLTVYWTPERVELAPLPS----WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK 131

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 42.8 bits (100), Expect = 1e-06
 Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 5/51 (9%)

Query: 14  FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            A P +   V         +         C+    +P A+I W+     + 
Sbjct: 115 LAKPQNTAEVQKVQ-----LTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          F  P     V + S    E+     + L+C V N K    IVWY+   E+ 
Sbjct: 5  FTGP---HFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREIS 49

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 22  IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           + G P    + I+E + + L C V    P  ++ W +    L 
Sbjct: 225 LGGLPDV--VTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALA 264

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.5 bits (95), Expect = 2e-06
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
               + I        +E+ E +  + EC++ +   +   +W  G   + 
Sbjct: 4  GSSGHVGITKRLKT--MEVLEGESCSFECVLSHESASDPAMWTVGGKTVG 51

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 8/56 (14%), Positives = 19/56 (33%)

Query: 8   RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           +  L   A P++            + ++++ +   C   N KP + + W       
Sbjct: 122 QLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGE 177

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 37.4 bits (86), Expect = 8e-05
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 13  QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           Q+ P  +IE             +  ++ L C      PA +  W   N  L
Sbjct: 229 QYEPEVTIE-----GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL 274

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 41.3 bits (96), Expect = 2e-06
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 8   RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
            + +  + PP  + +   P+     +   +  T+EC V   +P     +  +RGN  L 
Sbjct: 79  NSNVSVYQPPRQVILTLQPTL----VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLH 133

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 40.5 bits (94), Expect = 5e-06
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 14  FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
           +  P  +E+   PS         +++TL C V+   P A+  +V  RG  ELK
Sbjct: 83  YWTPERVELAPLPSW----QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK 131

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 40.3 bits (94), Expect = 6e-06
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 30  KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
             E+     + L+C V N K    IVWY+   E+ 
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 159

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 38.5 bits (90), Expect = 8e-06
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          + G   +      E   +   C ++N   + ++ WY G  +L+
Sbjct: 4  VSGQIMH--AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE 44

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 40.2 bits (93), Expect = 8e-06
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 14  FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
           +  P  +E+   PS         + +TL C V+   P A   +V  RG  ELK
Sbjct: 83  YWTPERVELAPLPS----WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK 131

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 39.9 bits (93), Expect = 9e-06
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 2  LSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61
          +              P   +I  +P +    +   Q + L C      P  +  W++ N 
Sbjct: 1  MGSSHHHHHHSSGLVPRGSKITVNPES--KAVLAGQFVKLCCRA-TGHPFVQYQWFKMNK 57

Query: 62 ELK 64
          E+ 
Sbjct: 58 EIP 60

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 4/50 (8%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
             + IE+        +E+   +    E  +  ++P     W      L 
Sbjct: 1  GAMALIEVEKPLYG--VEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLA 46

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
                      +N  +++ E       C      PAA + W +G  EL+
Sbjct: 7  GAN---CFTEELTN--LQVEEKGTAVFTCKT--EHPAATVTWRKGLLELR 49

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 37.8 bits (88), Expect = 2e-05
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 25 HPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           P++ +++       TL C V  A+   ++ WY+   +L 
Sbjct: 15 QPAHREVQAEAGASATLSCEV--AQAQTEVTWYKDGKKLS 52

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 6/59 (10%)

Query: 5   YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           +     L   A   +  I      S  EI  +    + C      P   + W     EL
Sbjct: 96  HLAEVTLSVKADFPTPSI------SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL 148

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 30  KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
             E+     + L+C V N K    IVWY+   E+ 
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 264

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 10/56 (17%), Positives = 18/56 (32%)

Query: 9   TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            RL   +       V   S   +EI E  ++      +     AK+ +     E+ 
Sbjct: 95  KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF 150

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 35.0 bits (80), Expect = 5e-04
 Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 7/49 (14%)

Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           P + E+V       ++      +  EC      P ++  W +     +
Sbjct: 3  DPFTKEVV-----VNVDDDGVISLNFECDK--MTPKSEFSWSKDYVSTE 44

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           +  P+ ++I+   +    +EC      P  +I+W R +   
Sbjct: 41 FLKEPT-NRIDFSNSTGAEIECKAS-GNPMPEIIWIRSDGTA 80

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 13  QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           +F PP    I          +     + L+C+     P  +I W     ++
Sbjct: 426 RFDPP---VIRQAFQE--ETMEPGPSVFLKCVAG-GNPTPEISWELDGKKI 470

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 9/65 (13%), Positives = 14/65 (21%), Gaps = 4/65 (6%)

Query: 3   SRYGPRTRLYQFAPPSSIE---IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG 59
           +R            P S     +V            +  + L C      P     WY+ 
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPA-QGYPVPVFRWYKF 285

Query: 60  NTELK 64
                
Sbjct: 286 IEGTT 290

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            PP     +    +  +E    + ITL+C V    P  +I WY+ +T+L+
Sbjct: 3  MEPPY---FIEPLEH--VEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLR 47

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 15  APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            PP        P +  +++   +  T +C V       KI W + N E++
Sbjct: 196 VPP---FFDLKPVS--VDLALGESGTFKCHV-TGTAPIKITWAKDNREIR 239

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 15  APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            PP        P    +E  +  ++ LEC ++   P  ++ W++   EL+
Sbjct: 383 EPPV---FRKKPHP--VETLKGADVHLECELQ-GTPPFQVSWHKDKRELR 426

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 38.3 bits (89), Expect = 3e-05
 Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 5/58 (8%)

Query: 8  RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
                         V  PS+          + L C  ++ +    I W +    L L
Sbjct: 13 HHHHGGRRSL---HFVSEPSD--AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL 65

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 37.0 bits (86), Expect = 4e-05
 Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
                E++   ++  + ++  ++   +C V  +       WY+   E++
Sbjct: 7  GQL---EVLQDIAD--LTVKAAEQAVFKCEV--SDEKVTGKWYKNGVEVR 49

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 15  APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            PP        P    +E  +  ++ LEC ++   P  ++ W++   EL+
Sbjct: 191 EPPV---FRKKPHP--VETLKGADVHLECELQ-GTPPFQVSWHKDKRELR 234

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           APP        P +  +++   +  T +C V       KI W + N E++
Sbjct: 3  MAPPF---FDLKPVS--VDLALGESGTFKCHV-TGTAPIKITWAKDNREIR 47

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.9 bits (88), Expect = 5e-05
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 21  EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           +   +PS+  + +   +   +EC      P   I W +  + L
Sbjct: 113 DFRQNPSD--VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL 153

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 36.5 bits (85), Expect = 5e-05
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          S I +     +        + + LEC V      A + W++   E+ 
Sbjct: 6  SGIMVTKQLED--TTAYCGERVELECEVSE--DDANVKWFKNGEEII 48

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 36.6 bits (85), Expect = 6e-05
 Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
             ++ +   +     +  A P  ++ WY+   E++
Sbjct: 16 PAYQVDKGGRVRFVVEL--ADPKLEVKWYKNGQEIR 49

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 36.6 bits (85), Expect = 6e-05
 Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          + P  + I+       +    ++ + L C +  ++      WY+   +++
Sbjct: 6  SGP--VHILSPQDKVSLTFTTSERVVLTCEL--SRVDFPATWYKDGQKVE 51

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 37.2 bits (86), Expect = 7e-05
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 8   RTRLYQFAPPSSIEIVGHP---SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           + +    + P  +E+         S   + E Q + L C         K+++Y+    LK
Sbjct: 69  QHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128

Query: 65  L 65
            
Sbjct: 129 Y 129

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 13  QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           + APP     V    +  + +R+  ++ L+  V    P   + +YR   E++
Sbjct: 100 ETAPP---NFVQRLQS--MTVRQGSQVRLQVRVT-GIPTPVVKFYRDGAEIQ 145

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 37.1 bits (86), Expect = 8e-05
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          APP ++  +       I + +   +TL C    +  +  I W+     + 
Sbjct: 1  APPKAVLKL---EPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP 47

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 8   RTRLYQFAPPSSIEIVGHP---SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +T     + P  + ++          +E +E + I L C     KP  K+ +++     K
Sbjct: 69  QTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK 128

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 37.2 bits (86), Expect = 8e-05
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 8   RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           + +L    PPS                      L C  ++  P ++  W++    +
Sbjct: 99  KVKLIVLVPPS---KPTVNIP--SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM 149

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 36.2 bits (84), Expect = 9e-05
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           P     IV    +   ++     + +   V      A+++W +   EL 
Sbjct: 7  GPV---LIVTPLED--QQVFVGDRVEMAVEVSE--EGAQVMWMKNGVELT 49

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 10  RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            L     P   +I   P N  ++I E  +  L C      P   + W +G++ L+
Sbjct: 94  ALQVKMKP---KITRPPIN--VKIIEGLKAVLPCTTM-GNPKPSVSWIKGDSALR 142

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 8/50 (16%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           P               E  E    TL+C +      A + W +G   L+
Sbjct: 7  GPA---RFTQDLKT--KEASEGATATLQCELS---KVAPVEWKKGPETLR 48

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 35.7 bits (83), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          APP          +    +RE Q++ +   V+  +P   + W R    ++
Sbjct: 4  APP---TFKVSLMD--QSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVR 47

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 3/50 (6%)

Query: 15  APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           A P                     + L  +    +P   + W+ G   L+
Sbjct: 99  ATPQFHPGYPLKEK--YYGAVGSTLRLHVMYI-GRPVPAMTWFHGQKLLQ 145

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 34.3 bits (79), Expect = 9e-04
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           P    I     +  +  +  +   L C +   +P   I WYR   EL 
Sbjct: 7  APG---IRKEMKD--VTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELI 49

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 9   TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
            R +   PPS I     P   ++   +   I L C +  AK    I WY+ N EL
Sbjct: 121 VRSHIRKPPSCI-----PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL 170

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 36.6 bits (84), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 3  SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
          S       L   +  +  E       + +E+  +  ITL+ LV +A      +W   ++ 
Sbjct: 36 SPEDLGCALRPQSSGTVYE------AAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSS 88

Query: 63 LKL 65
          L  
Sbjct: 89 LNC 91

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
             S I          +     + + L C +   +P A++ W +   E+ 
Sbjct: 9  DVSSWIVYPSGKVY--VAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVV 54

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          A     +++G P    + + + Q + L C V        I W +    ++
Sbjct: 1  AGL---KLMGAPVK--LTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQ 44

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           P           +  +E+ E    TL C++  +  AA + W  GN  L+
Sbjct: 7  GPV---RFQEALKD--LEVLEGGAATLRCVL--SSVAAPVKWCYGNNVLR 49

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)

Query: 15  APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
            P     I   P      I     + + C      P   I W +  T++ +
Sbjct: 106 TPAGFPVITQGPGT--RVIEVGHTVLMTCKAI-GNPTPNIYWIKNQTKVDM 153

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
             + I+    +  ++++E    T  C + +      + W+   T L 
Sbjct: 11 GRRVHIIEDLED--VDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLH 55

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 29  SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           S     E + + L C     K    +++YR     K
Sbjct: 90  SSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK 125

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 3/44 (6%)

Query: 21  EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           + +       +     + ++++      KP   I W +G   + 
Sbjct: 106 KTLEGMGA--VHALRGEVVSIKIPFS-GKPDPVITWQKGQDLID 146

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 35.4 bits (81), Expect = 4e-04
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 3  SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
          S       L   +  +  E       + +E+  +  ITL+ LV +A      +W   ++ 
Sbjct: 36 SPEDLGCALRPQSSGTVYE------AAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSS 88

Query: 63 LK 64
          L 
Sbjct: 89 LN 90

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 35.1 bits (80), Expect = 6e-04
 Identities = 4/38 (10%), Positives = 15/38 (39%)

Query: 27  SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +  ++ ++  + + + C   +      + W   N  L+
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE 270

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
                P +  +E+        E      +   K+ W RG +++ 
Sbjct: 9  SAFSKKPRS--VEVAAGSPAVFEAET--ERAGVKVRWQRGGSDIS 49

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 34.3 bits (79), Expect = 4e-04
 Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          ++ +  +I L   +  A   A++ W +   E++
Sbjct: 27 QVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQ 57

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 35.1 bits (80), Expect = 4e-04
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 32  EIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
            +   + IT++C V +  P  +  I   +G+  +K
Sbjct: 102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK 136

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 34.8 bits (80), Expect = 5e-04
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)

Query: 21  EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           +    P +    + + +   LEC      P   ++W +    L 
Sbjct: 110 DFRVEPKD--TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 35.1 bits (80), Expect = 5e-04
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 16  PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            P    I G+  N        + I + C      P  +I+W++ N  L 
Sbjct: 666 AP---TITGNLEN--QTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLV 708

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 35.1 bits (80), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 9   TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
           T +     P      G  S   +E    + + +        P  +I WY+    L+
Sbjct: 320 TFVRVHEKPFVAFGSGMESL--VEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLE 372

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 34.6 bits (79), Expect = 6e-04
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 5/54 (9%)

Query: 8   RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61
              +    PP    +    S+    I E +   L C  ++  P     WY+   
Sbjct: 75  TANIQLHGPP---RVKAVKSS--EHINEGETAMLVCKSESVPPVTDWAWYKITD 123

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 33.8 bits (78), Expect = 6e-04
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            PS         +    + E Q+  L+C V    P  +I W      ++
Sbjct: 10 VAPS---FSSVLKD--CAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQ 53

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 34.6 bits (79), Expect = 6e-04
 Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 8   RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
              L    PPS              +       L C   +  P ++  W++    +
Sbjct: 96  SIHLTVLVPPS---KPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM 146

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
           P     +  P+ ++I+   +    +EC      P  +I+W R +   
Sbjct: 3  GPV---FLKEPT-NRIDFSNSTGAEIECKAS-GNPMPEIIWIRSDGTA 45

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 34.4 bits (79), Expect = 7e-04
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 9   TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
             +    PP+ I +     N        +E+T  C      P   I W+R    +
Sbjct: 89  IIVIVNVPPA-ISMPQKSFN--ATAERGEEMTFSCRAS-GSPEPAISWFRNGKLI 139

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 34.6 bits (79), Expect = 7e-04
 Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 9   TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
             L     P  ++    P N      EN + T  C      P  ++   +  T  
Sbjct: 176 RELRVLYGPR-LDERDCPGN--WTWPENSQQTPMCQAW-GNPLPELKCLKDGTFP 226

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 34.6 bits (79), Expect = 7e-04
 Identities = 8/43 (18%), Positives = 11/43 (25%), Gaps = 2/43 (4%)

Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            G      +       + L C      P    VW +  T L 
Sbjct: 11 EPGQQEQ--LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV 51

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 33.9 bits (78), Expect = 8e-04
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
            P     +  P +   ++ E   + LEC + +A P  K+ W R N  ++
Sbjct: 14 RAPM---FIYKPQS--KKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQ 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.29
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.26
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.14
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.13
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.08
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.02
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.0
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.98
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.95
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.93
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.93
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.91
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.86
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.85
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.84
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.82
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.82
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.81
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.8
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.8
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.77
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.77
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.77
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.76
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.76
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.76
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.75
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.75
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.74
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.74
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.74
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.74
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.74
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.73
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.73
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.73
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.73
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.72
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.71
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.71
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.7
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.7
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.7
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.69
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.69
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.68
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.68
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.68
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.67
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.67
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.67
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.67
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.66
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.66
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.66
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.66
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.66
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.66
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.66
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.66
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.66
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.65
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.65
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.64
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.63
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.63
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.63
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.62
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.62
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.62
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.61
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.61
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.61
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.61
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.61
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.6
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.6
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.6
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.6
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.6
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.59
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.59
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.59
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.58
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.58
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.58
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.58
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.58
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.58
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.57
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.57
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.57
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.57
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.56
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.56
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.56
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.55
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.55
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.55
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.55
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.54
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.54
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.54
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.54
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.54
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.54
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.54
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.53
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.53
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.53
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.53
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.53
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.52
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.52
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.52
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.52
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.52
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.51
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.51
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.51
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.51
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.5
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.5
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.5
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.5
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.49
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.49
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.48
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.48
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.47
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.47
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.47
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.47
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.47
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.47
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.46
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.46
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.46
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.46
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.46
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.45
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.45
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.45
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.45
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.45
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.44
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.44
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.44
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.44
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.43
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.43
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.43
2ens_A	96	Advanced glycosylation END product-specific recept	98.43
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.42
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.42
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.42
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.42
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.42
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.41
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.41
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.41
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.41
1he7_A	126	High affinity nerve growth factor receptor; transf	98.4
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.4
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.39
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.39
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.39
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.39
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.39
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.39
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.39
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.38
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.38
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.38
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.38
3p73_B	99	Beta-2-microglobulin; IG-like C1-type (immunoglobu	98.38
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.38
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.37
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.37
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.37
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.37
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.36
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.36
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.35
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.35
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.35
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.35
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.34
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.33
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.33
1k5n_B	100	Beta-2-microglobulin, light chain; MHC(major histo	98.33
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.33
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.32
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.32
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.32
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.32
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.32
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.32
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.32
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.31
1lk2_B	99	Beta-2-microglobulin; class I MHC-peptide complex,	98.31
3gbl_A	97	BETA2-microglobulin; immune response, immunoglobul	98.31
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.31
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.31
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.31
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.3
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.3
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.3
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.29
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.29
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.28
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.28
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.28
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.28
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.28
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.27
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.27
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.27
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.26
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.26
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.26
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.26
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.26
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.25
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.25
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.25
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.25
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.24
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.24
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.24
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.24
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.24
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.24
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.23
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.23
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.23
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.23
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.23
3jts_B	119	Beta-2-microglobulin; alpha helix, beta sheet, bet	98.22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.22
3o81_A	119	Beta-2-microglobulin; IG-like C1-type (immunoglobu	98.22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.22
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.22
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.22
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.22
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.21
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.21
1bii_B	119	Beta-2 microglobulin, MHC class I H-2DD; complex (	98.21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.2
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.2
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.2
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.2
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.2
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.2
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.2
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.19
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.19
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.19
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.19
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.19
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.19
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.18
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.18
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.18
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.17
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.17
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.17
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.17
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.17
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.16
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.16
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.16
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.16
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.16
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.15
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.14
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.14
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.14
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.14
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.13
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.12
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.11
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.1
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.09
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.08
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.08
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.07
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.06
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.03
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.03
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.03
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.02
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.02
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.02
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.01
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.01
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.01
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.0
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.0
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	97.99
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	97.99
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	97.99
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	97.99
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	97.98
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.98
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.98
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	97.98
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.98
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	97.98
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	97.97
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.96
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.95
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.95
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	97.94
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.93
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	97.93
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	97.92
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.92
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	97.91
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.91
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.91
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	97.89
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	97.89
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.88
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.88
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.87
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	97.87
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.87
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	97.87
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	97.85
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	97.84
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	97.82
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.82
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.81
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	97.81
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	97.81
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.8
3c5j_A	181	HLA class II histocompatibility antigen, DR alpha;	97.8
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.78
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	97.78
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	97.77
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.77
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	97.77
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	97.77
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	97.76
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	97.75
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	97.75
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.75
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	97.75
1uvq_A	197	HLA class II histocompatibility antigen; immunolog	97.75
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	97.74
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	97.74
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	97.73
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.73
3s6c_A	392	Beta-2-microglobulin, T-cell surface glycoprotein	97.73
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.72
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	97.72
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	97.72
1iak_A	199	MHC class II I-AK; histocompatibility antigen, pep	97.71
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	97.7
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	97.7
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.7
3ov6_A	397	Beta-2-microglobulin, T-cell surface glycoprotein	97.68
3c5j_B	190	MHC class II antigen; HLA, MHC class II, glycoprot	97.68
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	97.68
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	97.67
1uvq_B	198	HLA class II histocompatibility antigen; immunolog	97.67
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	97.67
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.66
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.65
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	97.65
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.64
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	97.63
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	97.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.62
1cd1_A	315	CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein,	97.62
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	97.61
2bc4_B	211	HLA class II histocompatibility antigen, DM beta c	97.61
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	97.6
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.59
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	97.59
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	97.59
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	97.59
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.58
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	97.58
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.58
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.57
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	97.57
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.57
2bc4_A	211	HLA class II histocompatibility antigen, DM alpha	97.57
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	97.56
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	97.56
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.55
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	97.55
3i84_A	98	Cervical EMMPRIN; CD147, dimerization, cell adhesi	97.55
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	97.54
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	97.54
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.54
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.54
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.54
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	97.53
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.53
3khq_A	133	B-cell antigen receptor complex-associated protei	97.51
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	97.51
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	97.5
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	97.5
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.5
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	97.49
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	97.48
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	97.48
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.48
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.48
3nwm_A	443	Peptide/beta-2microglobulin/MHC class I H-2KD CHI	97.48
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	97.47
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	96.6
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.47
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.46
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.46
1onq_A	283	T-cell surface glycoprotein CD1A; protein-glycolip	97.46
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	97.46
3usa_D	189	HLA class II histocompatibility antigen, DO beta;	97.46
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	97.45
3lqz_A	181	HLA class II histocompatibility antigen, DP alpha;	97.45
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.44
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	97.44
2p24_A	236	H-2 class II histocompatibility antigen, A-U ALPH;	97.44
3usa_C	181	HLA class II histocompatibility antigen, DO alpha;	97.43
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	97.43
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.43
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.43
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	97.42
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	97.42
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.42
2h26_A	286	CD1B antigen, T-cell surface glycoprotein CD1B; li	97.42
1xt5_A	135	Variable region-containing chitin-binding protein	97.41
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.41
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	97.41
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.4
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.4
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	97.39
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.38
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	97.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.37
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.37
1iao_B	222	MHC class II I-AD; MHC II, class II MHC, ovalbumin	97.36
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	97.36
2qrt_A	422	H-2KB, H-2 class I histocompatibility antigen K-B	97.35
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.35
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.34
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.34
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	97.34
2otu_A	115	FV light chain variable domain; antibody FV polygl	97.32
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.31
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.31
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	97.3
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	97.3
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.4
4aen_A	207	HLA class II histocompatibility antigen, DR alpha;	97.29
4f7e_A	283	CD1D antigen, D polypeptide; protein-glycolipid co	97.29
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	97.28
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.28
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	97.27
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.27
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.27
3huj_A	284	R3G1, T-cell surface glycoprotein CD1D; CD1D, alph	97.25
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	97.24
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.24
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	97.24
3p73_A	275	MHC RFP-Y class I alpha chain; IG-like C1-type (im	97.23
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	97.23
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	97.22
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	97.19
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	97.19

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.29  E-value=3.8e-12  Score=76.31  Aligned_cols=56  Identities=32%  Similarity=0.501  Sum_probs=48.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce--EEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~--i~W~~~~~~l~   64 (65)
                      ....++|+|+.+|.++.|...+.    .+.+|+.++|+|++.++.|+++  |+|||+++++.
T Consensus        74 ~~~~~~l~V~~~P~~v~i~~~~~----~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~  131 (185)
T 1iam_A           74 STAKTFLTVYWTPERVELAPLPS----WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK  131 (185)
T ss_dssp             EEEECEEEEEBCCSEEEECCCCS----EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEE
T ss_pred             eEEEEEEEEeCCCCCCEEccCCc----cccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcc
Confidence            44568999999999988876543    6999999999999999999975  89999999874

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.26  E-value=6.5e-12  Score=75.91  Aligned_cols=56  Identities=29%  Similarity=0.446  Sum_probs=48.4

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce--EEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~--i~W~~~~~~l~   64 (65)
                      ....++|+|+.+|+++.|...+.    .+.+|+.++|+|++.+++|+++  |+||||+++|.
T Consensus        77 ~~~~v~l~Vy~~P~~v~i~~~~~----~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~  134 (196)
T 3bn3_B           77 LQARGLIRTFQRPDRVELMPLPP----WQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELI  134 (196)
T ss_dssp             EEEECEEEEEBCCCCCEECCCCS----SEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEE
T ss_pred             eEEEEEEEEecCCCcCEEccCCc----cccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEee
Confidence            34568999999999999876543    4899999999999999999988  79999999875

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.14  E-value=8.4e-11  Score=71.04  Aligned_cols=55  Identities=22%  Similarity=0.512  Sum_probs=48.7

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce--EEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~--i~W~~~~~~l~   64 (65)
                      ...++|+|+.+|+++.|...+.    .+.+|+.++|+|++.++.|.+.  |.|||++++|.
T Consensus        77 ~~~~~itVy~~P~~v~i~~~p~----~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~  133 (192)
T 1zxq_A           77 SMNSNVSVYQPPRQVILTLQPT----LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLH  133 (192)
T ss_dssp             EEEEEEEECBCCCCCEEEEESS----EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEE
T ss_pred             EEEEEEEEEeCCCCceEccCCc----cccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEee
Confidence            3568999999999999986554    7999999999999999999998  79999999874

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.13  E-value=1.8e-11  Score=77.26  Aligned_cols=56  Identities=32%  Similarity=0.488  Sum_probs=47.5

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~~~~l~   64 (65)
                      +...++|+|+.+|+++.|...+.    .+.+|+.++|+|.+.+++|++  .|+||||++++.
T Consensus        74 ~~~~v~l~V~~~P~~v~I~~~~~----~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~  131 (291)
T 1mq8_A           74 STAKTFLTVYWTPERVELAPLPS----WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK  131 (291)
T ss_dssp             EEEECEEEECBCCSCCCBCCCCS----BCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEE
T ss_pred             EEEEEEEEEecCCCCCEEecCCc----cccCCCCEEEEEEecCccCCCCcEEEEEECCEEee
Confidence            44567999999999998876543    589999999999999999988  489999998764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.08  E-value=2.3e-10  Score=67.58  Aligned_cols=56  Identities=20%  Similarity=0.329  Sum_probs=45.4

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~~~~l~   64 (65)
                      ..+..+.|+|..+|..+.+... .    .+.+|+.++|+|.+.++.|++  .|+|||||+++.
T Consensus        79 ~~~~~~~l~V~~~p~~~~~~~~-~----~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           79 KLEKGIQVEIYSFPKDPEIHLS-G----PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             EEEEEEEEEEEBCCSCCEEEES-S----CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             eEeeEEEEEEEeCCCCCEeCCc-e----EEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence            3455789999999988887653 2    589999999999998876764  799999998763

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.02  E-value=5e-10  Score=65.65  Aligned_cols=58  Identities=29%  Similarity=0.566  Sum_probs=46.7

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcE-EEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEI-TLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~-~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|..+.+...+.  .+.+.+|+.+ +|.|.+..++|++.|+|||+|+++.
T Consensus       104 ~~~~~~l~V~~~p~~~~~~~~~~--~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~  162 (231)
T 2pet_A          104 AEATARLNVFAKPEATEVSPNKG--TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLE  162 (231)
T ss_dssp             EEEEEEEEEEBCCCCCEEEECCS--SCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECC
T ss_pred             eEEEEEEEEEecCCCcEEecCCc--ceeecCCCceEEEEEEeECcccCCEEEEEECCccCc
Confidence            34567899999999888865442  2346789988 9999997778999999999999874

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.00  E-value=9.1e-10  Score=66.96  Aligned_cols=54  Identities=15%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc----eEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA----KIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~----~i~W~~~~~~l~   64 (65)
                      +....++|+|+.+|..+.+..  .    .+.+|+.+ |+|.+.+..|++    .|+|||||++|.
T Consensus        84 ~~~~~~~ltV~~~P~~~~i~~--~----~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~  141 (210)
T 1gsm_A           84 TFQHTVQLLVYAFPNQLTVSP--A----ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELE  141 (210)
T ss_dssp             EEEEEEEEEEEBCCSEEEEES--S----SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECT
T ss_pred             ceEEEEEEEEEecCCCcEEcc--c----eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcc
Confidence            445678999999999877763  2    57888889 999998877865    899999999985

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.98  E-value=2e-09  Score=66.44  Aligned_cols=56  Identities=21%  Similarity=0.431  Sum_probs=45.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..+|..|.+....    ..+.+|+.++|.|.+.+..|++ .|+|||||+++.
T Consensus       105 ~~~~~~l~V~~~p~~p~i~~~~----~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~  161 (327)
T 2wng_A          105 SGAGTELSVRAKPSAPVVSGPA----ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS  161 (327)
T ss_dssp             ECCCEEEEEEBCCCCCEEECCS----SCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             ecCcEEEEEEecCCCceeeccc----cccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcc
Confidence            4567899999999988886322    2678999999999998765544 999999999874

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.95  E-value=3.8e-09  Score=61.75  Aligned_cols=52  Identities=19%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCC-cEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQ-EITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~-~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.|+|+.+|..|.+.....    ....|. .++|+|.+.++.|.+.|+|+|+|+.+
T Consensus        99 ~~~L~V~~~~~~p~i~~~~~----~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l  151 (193)
T 2if7_A           99 SYTLRILRQLRNIQVTNHSQ----LFQNMTCELHLTCSVEDADDNVSFRWEALGNTL  151 (193)
T ss_dssp             EEEEEEECCCEEEEEEECCC-------CSSEEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             EEEEEEEccCCCCeEecCce----eecCCCceEEEEEEEecCCCceEEEEEeCCEEc
Confidence            57899999888887765432    234565 89999999887778999999999865

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.93  E-value=6e-09  Score=60.06  Aligned_cols=53  Identities=19%  Similarity=0.377  Sum_probs=43.5

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE-Ec
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT-EL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~-~l   63 (65)
                      ...+.|+|.++|..+.+...     ..+.+|+.++|.|.+..++|.+.|+|||+++ .+
T Consensus        94 ~~~~~l~V~~~p~~~~~~~~-----~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l  147 (212)
T 1f97_A           94 EVSIHLTVLVPPSKPTISVP-----SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML  147 (212)
T ss_dssp             EEEEEEEEEBCCCCCEEECC-----SEEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred             EEEEEEEEEcCCCCcccCCc-----cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccc
Confidence            34678999999988776432     2688999999999965789999999999998 55

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.93  E-value=2.5e-09  Score=61.96  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=40.5

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.|.|..++..|.+...      ....|+.++|.|.+.+++|.|.|+|||||+.+.
T Consensus        98 ~~~~l~V~~~~~~p~~~~~------~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~  149 (201)
T 1dr9_A           98 AEVTLSVKADFPTPSISDF------EIPTSNIRRIICSTSGGFPEPHLSWLENGEELN  149 (201)
T ss_dssp             EEEEEEEECCCCCCEEEEE------ECSSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             cEEEEEEcCCCCCCceEec------cCCCCCeEEEEEecCCccCCCEEEEEECCEECc
Confidence            3577888887666666432      235688999999997788999999999998764

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.86  E-value=1e-08  Score=59.63  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=41.1

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCC---CCCceEEEEECCEE
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNA---KPAAKIVWYRGNTE   62 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~---~P~~~i~W~~~~~~   62 (65)
                      ..+.|+|..+|..|.|... .    .+.+|+.++|.|.+.++   .|++.|+|+|++..
T Consensus       114 ~~~~l~V~~~~~~p~i~~~-~----~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~  167 (214)
T 2zg1_A          114 NKLNLEVTALIEKPDIHFL-E----PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS  167 (214)
T ss_dssp             SCEEEEEECCCCCCEEC---C----CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTS
T ss_pred             CceEEEEecCCCCCceecC-c----cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCc
Confidence            5789999998888887542 2    36899999999999765   58999999999754

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.85  E-value=5e-09  Score=56.24  Aligned_cols=35  Identities=26%  Similarity=0.646  Sum_probs=30.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+. |.|.|.|+|||||+++.
T Consensus        13 ~~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~g~~i~   47 (100)
T 3knb_A           13 SDISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIH   47 (100)
T ss_dssp             SEEEEETTSEEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             CcEEEeCCCeEEEEEEEE-EecCCEEEEEECceEee
Confidence            457889999999999996 58999999999999874

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.8e-09  Score=58.73  Aligned_cols=53  Identities=13%  Similarity=0.308  Sum_probs=40.4

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..++|+|..+|.  .+...+  ..+.+.+|+.++|.|.+. +.|.+.|+|||||+.+.
T Consensus         3 s~a~l~V~~~p~--~~~~~~--~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~l~   55 (115)
T 2cr6_A            3 SGSSGLVQGRRV--HIIEDL--EDVDVQEGSSATFRCRIS-PANYEPVHWFLDKTPLH   55 (115)
T ss_dssp             CCCCCCCCSSCC--EEEECC--CEEEEETTSCEECCCEEE-STTCCSCEEEESSCEEC
T ss_pred             ccEEEEEcCCCC--eEeccC--ccEEEeCCCcEEEEEEEc-CCCCCccEEEECCEECC
Confidence            456788887763  343222  356899999999999996 57889999999998763

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.82  E-value=2.1e-08  Score=58.16  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=40.1

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|..++..|.+...+.   ..+.+|+.++|.|.+.+.  ++.++|||+|..+
T Consensus        86 ~~s~~~~l~V~~~~~~p~i~~~~~---~~v~~G~~v~L~C~~~~~--~~~v~W~k~g~~~  140 (198)
T 1ugn_A           86 ESSDPLELVVTGAYIKPTLSAQPS---PVVNSGGNVTLQCDSQVA--FDGFILCKEGEDE  140 (198)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEESC---SEEETTCCEEEEEECSSC--CSEEEEEEC----
T ss_pred             cCCccEEEEEcccccCCccccCCc---cccCCCCcEEEEEecCCC--CcEEEEEECCCcc
Confidence            345678999998666677765442   368899999999999764  6799999999865

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.82  E-value=1.4e-08  Score=58.89  Aligned_cols=54  Identities=11%  Similarity=0.100  Sum_probs=32.4

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+..+.|.|..++..|.+...+.   ..+.+|+.++|.|.+.+ .| +.++|||+|+.+
T Consensus        86 ~s~~~~l~V~~~~~~p~i~~~~~---~~v~~G~~v~L~C~~~~-~p-~~~~W~k~g~~~  139 (196)
T 2d3v_A           86 PSDPLELVVTGFYNKPTLSALPS---PVVTSGENVTLQCGSRL-RF-DRFILTEEGDHK  139 (196)
T ss_dssp             CCCCEEEEEECSSCCCEEEC--------------CEEEEEESS-CC-SEEEEEEC---C
T ss_pred             cCccEEEEecCCCCCCeEEccCC---ccccCCCcEEEEEEcCC-CC-CEEEEEccCCcc
Confidence            35678999998766777765432   36889999999999965 56 899999999875

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.81  E-value=2.3e-09  Score=61.69  Aligned_cols=54  Identities=17%  Similarity=0.423  Sum_probs=42.9

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|.++|..+.+.. +    ..+.+|+.++|.|.+..++|++.++|||+|+.+.
T Consensus        97 ~~~~~l~V~~~p~~~~~~~-~----~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~  150 (209)
T 1nbq_A           97 EVKVKLIVLVPPSKPTVNI-P----SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP  150 (209)
T ss_dssp             CCEEECCEEBCCCCCCCCC-B----SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCC
T ss_pred             eEEEEEEEecCCcCCCccc-c----cceecCCEEEEEEeCCCCCCCceeEEEECCeeCC
Confidence            4567899999997765432 1    2588999999999986789999999999998653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.80  E-value=5.6e-08  Score=55.48  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+..++|+|..+|  +.+.. +.   ..+.+|+.++|.|.+.++.|++.++|||+|+.+
T Consensus        78 ~s~~~~l~V~~~~--~~~~~-~~---~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~  130 (175)
T 1fnl_A           78 LSDPVQLEVHIGW--LLLQA-PR---WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR  130 (175)
T ss_dssp             CCCCEEEEEECSS--EEEEC-SC---SEEETTCCEEEEEEECTTCCCEEEEEEETTEEE
T ss_pred             ccccEEEEEeCCC--ceeeC-CC---ceecCCCCEEEEEEcCCCCCceEEEEEECCeEc
Confidence            3567889998544  23332 22   368899999999999776666799999999876

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.80  E-value=2.5e-08  Score=58.15  Aligned_cols=55  Identities=9%  Similarity=0.095  Sum_probs=42.8

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|..++..|.+...+.   ..+.+|+.++|.|.+.+  |++.+.|||+|+.+
T Consensus        93 ~~s~~~~l~V~~~~~~p~i~~~p~---~~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~  147 (201)
T 1nkr_A           93 APSDPLDIVIIGLYEKPSLSAQPG---PTVLAGENVTLSCSSRS--SYDMYHLSREGEAH  147 (201)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEESC---SEECTTCEEEEEEEESS--CCSEEEEEETTCSS
T ss_pred             CCCCCEEEEeeccCCCCceecCCC---CccCCCCeEEEEEeCCC--CCceEEEEECCccc
Confidence            345678999998766777765443   26899999999999864  57899999998754

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.79  E-value=3.5e-08  Score=58.17  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=42.0

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|+|..+|.   +...+.   ..+.+|+.++|.|.+.++.|.+.|+|||||+.+
T Consensus        77 ~~s~~~~l~V~~~p~---~~~~~~---~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~  130 (204)
T 3sgj_C           77 TLSDPVQLEVHIGWL---LLQAPR---WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR  130 (204)
T ss_dssp             BCCCCEEEEEECSSE---EEECSC---SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEE
T ss_pred             cccccEEEEEecCce---EecCCc---eeEeCCCcEEEEEEecCCCCCceEEEEECCcEe
Confidence            345678999998763   332232   367899999999999777788999999999875

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.77  E-value=1.9e-08  Score=57.89  Aligned_cols=50  Identities=14%  Similarity=0.207  Sum_probs=40.7

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      ...+.|+|..+|..+.+....     .+.+|+.++|.|.+..+.|.+.|+|||++
T Consensus       111 ~~~~~l~V~~~p~~~~~~~~~-----~~~~g~~v~l~C~~~~g~p~~~v~W~~~~  160 (214)
T 3jz7_A          111 NKKFLLTVLVKPSGTRCFVDG-----SEEIGNDFKLKCEPKEGSLPLQFEWQKLS  160 (214)
T ss_dssp             EEEEEEEEECCCBSCEEEEES-----CCBTTCCEEEEEECSBCCSSCEEEEEECS
T ss_pred             ccEEEEEEEcCCCCceeeeec-----ceecCCcEEEEecCCCCCCCCEEEEEECC
Confidence            456889999999887664332     37899999999999777899999999953

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.77  E-value=1.2e-08  Score=55.51  Aligned_cols=34  Identities=26%  Similarity=0.668  Sum_probs=30.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. |+|.+.|+|||||++|.
T Consensus        22 ~~~v~~G~~~~l~C~~~-G~P~p~v~W~k~g~~l~   55 (107)
T 3knb_B           22 PVRVVSGAEAELKCVVL-GEPPPVVVWEKGGQQLA   55 (107)
T ss_dssp             CEEEETTSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             cEEEeCCCcEEEEEEEE-EecCCEEEEEECccccc
Confidence            36789999999999995 58999999999999874

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.77  E-value=5.2e-08  Score=55.55  Aligned_cols=54  Identities=19%  Similarity=0.186  Sum_probs=40.4

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+..+.|+|..++.  .+....    ..+.+|+.++|.|.+.++.|.+.++|||||+.+.
T Consensus        75 ~s~~~~l~V~~~~~--~~~~~~----~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (176)
T 1f2q_A           75 ESEPVYLEVFSDWL--LLQASA----EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK  128 (176)
T ss_dssp             CCCCEEEEEECSSE--EEEESC----SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC
T ss_pred             ccccEEEEEeCcce--eecCCc----ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEe
Confidence            35678888984432  222222    2678999999999997778889999999998863

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.76  E-value=4.8e-08  Score=55.01  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=40.8

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+..+.|+|..+|   .+...+.   ..+.+|+.++|.|.+.++.|.+.++|||+|+.+
T Consensus        75 ~s~~~~l~v~~~~---~~~~~~~---~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~  127 (170)
T 3ry4_A           75 LSDPVHLTVLFEW---LVLQTPH---LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ  127 (170)
T ss_dssp             CCCCEEEEEECCS---EEEECSC---SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEE
T ss_pred             ceEeEEEEEECCc---eEecCCC---ceeecCCeEEEEEECCCCCCCceEEEEECCeEc
Confidence            4567889998866   2222222   367899999999999777788999999999875

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.76  E-value=1.1e-08  Score=59.62  Aligned_cols=59  Identities=20%  Similarity=0.442  Sum_probs=41.7

Q ss_pred             ccCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .++..+.|.|...| ..|.+...+..  ..+.+|+.++|.|.+.+..|+ +.|+|||||+++.
T Consensus        98 ~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (213)
T 3mj8_L           98 VFGSGTKVTVLGQPNAAPSVTLFPPS--SEELKTNQATLVCMINGFYPADVAVTWEADGTPIT  158 (213)
T ss_dssp             EEBCCEEEEEECSCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EEcCceEEEEeCCCCCCCeEEccCCC--cccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence            45677899999544 34455433321  134489999999999876666 5999999999863

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.76  E-value=2e-08  Score=52.29  Aligned_cols=33  Identities=15%  Similarity=0.529  Sum_probs=28.6

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+. ++|.+.+.|||+|+.+.
T Consensus        13 ~~v~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~   45 (91)
T 3bfo_A           13 QKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLT   45 (91)
T ss_dssp             EEECTTSCEEEECEEE-CSSCCEEEEEETTEECT
T ss_pred             cEecCCCcEEEEEEec-cCCCCEEEEEcCCeeCC
Confidence            3678999999999985 57899999999998864

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.75  E-value=6.1e-09  Score=54.71  Aligned_cols=33  Identities=15%  Similarity=0.499  Sum_probs=28.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. + |.+.|+|||||++|.
T Consensus         5 ~v~~~~G~~v~l~C~vs-~-p~p~v~W~k~g~~l~   37 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLS-G-PGGPVRWYKDGERLA   37 (84)
T ss_dssp             CEEECTTSCEEEECCCS-C-CSTTCEEEETTEECC
T ss_pred             EEEEecCCCEEEEEEEC-C-CCcEEEEEECCEEcc
Confidence            46789999999999983 3 888999999999874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.75  E-value=3.2e-08  Score=65.80  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=44.3

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +..+.|+|.++|..+.+....    ..+.+|+.++|.|.+ .++|++.|+|||||+.+
T Consensus       192 s~~~~l~V~~~p~~~~~~~~~----~~~~~G~~~~l~C~~-~g~p~~~i~W~~~g~~i  244 (642)
T 1e07_A          192 SDSVILNVLYGPDAPTISPLN----TSYRSGENLNLSCHA-ASNPPAQYSWFVNGTFQ  244 (642)
T ss_pred             cceEEEEEEeCCCCcEEecCC----cccccCCEEEEEEEc-CCCCCcEEEEEECCeEc
Confidence            456899999988887775332    368899999999999 67899999999999876

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.74  E-value=7.8e-09  Score=60.81  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=43.7

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      ++..+.|+|...+..|.+......  ....+|+.++|+|.+.++.| .+.|+|||||+.+.
T Consensus       121 ~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~  179 (237)
T 3sob_L          121 FGQGTKVEIKRTVAAPSVFIFPPS--DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  179 (237)
T ss_dssp             ECCCEEEEEECCCBCCEEEEECCC--HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             EcCcEEEEEecCCCCCceEEeCCC--hhhccCCceEEEEEEcccCCCceEEEEEECCCCCC
Confidence            466789999887777777543321  12446888999999988777 79999999998764

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.74  E-value=3.2e-08  Score=57.67  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEEC-CEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG-NTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~-~~~l   63 (65)
                      ..++|.|..+|..+.+...     ..+.+|+.++|.|.+.+ +|.+.|+|+++ ++.+
T Consensus       107 ~~~~l~V~~~~~~~~~~~~-----~~~~~g~~v~L~C~~~g-~P~p~i~W~~~~g~~~  158 (222)
T 3sbw_C          107 KRITVKVNAPYNKINQRIL-----VVDPVTSEHELTCQAEG-YPKAEVIWTSSDHQVL  158 (222)
T ss_dssp             EEEEEEEEBCCCCCEEEEE-----EEETTTTEEEEEEEEEE-BSCCEEEEEETTCCEE
T ss_pred             eEEEEEEECCCCCCCceee-----eeecCCCcEEEEEEecC-CCCCeEEEEECCCcee
Confidence            3578999998887765431     15678999999999966 89999999998 5543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.74  E-value=1.1e-08  Score=59.55  Aligned_cols=59  Identities=24%  Similarity=0.474  Sum_probs=41.9

Q ss_pred             ccCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .++..+.|+|...| ..|.+.....  ......|+.++|.|.+.++.|++ .|+|||||+++.
T Consensus       105 ~~~~~~~l~V~~~~~~~P~~~~~~~--~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  165 (218)
T 3s96_B          105 VFGGGTKVTVLGQPKSTPTLTVFPP--SSEELKENKATLVCLISNFSPSGVTVAWKANGTPIT  165 (218)
T ss_dssp             EECCCEEEEEESCCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-
T ss_pred             EEcCcEEEEEecCCCCCceEEeeCC--CcccccCCcEEEEEEECcccCCCeEEEEEECCEECc
Confidence            35667899999655 4445543221  11345678999999998777877 999999999873

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.74  E-value=3.8e-08  Score=51.60  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=29.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.+..|.+.|+|||+++.+.
T Consensus        11 ~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~   44 (97)
T 2bk8_A           11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE   44 (97)
T ss_dssp             EEECTTCCEEEEEEEESCCTTCEEEEEETTEECC
T ss_pred             EEEcCCCcEEEEEEEeccCCCCEEEEEECCEECc
Confidence            5789999999999997645899999999998764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.74  E-value=2e-08  Score=64.10  Aligned_cols=55  Identities=31%  Similarity=0.485  Sum_probs=40.9

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~~~~l~   64 (65)
                      +..+.|+|+.+|....+...+    ..+.+|+.++|.|.+.+..|++  .|+|||||+++.
T Consensus        75 ~~~~~l~V~~~P~~~~~~~~~----~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~  131 (450)
T 1z7z_I           75 TAKTFLTVYWTPERVELAPLP----SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK  131 (450)
T ss_dssp             EEECEEEEEBCCSEEEECCCC----SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEE
T ss_pred             eeEEEEEEEeCCCcceecCCC----ceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEee
Confidence            445789999988754332221    3688999999999997754444  899999998763

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.73  E-value=1.8e-09  Score=59.13  Aligned_cols=54  Identities=17%  Similarity=0.350  Sum_probs=40.9

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce-EEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK-IVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~l~   64 (65)
                      .....++|+|.+||....  . .   .+.+.+|+.++|.|.+. +.|.|. |+|+++++.+.
T Consensus         2 s~~~~~~l~V~~~P~i~~--~-~---~~~~~~G~~v~l~C~~~-g~P~p~~i~W~~~~~~l~   56 (122)
T 2cry_A            2 SSGSSGTLTVNGPPIISS--T-Q---TQHALHGEKGQIKCFIR-STPPPDRIAWSWKENVLE   56 (122)
T ss_dssp             CSSCCCCCCCCSSCCEEE--E-C---CCCCCTTSCCCCCEEEC-CSSCCSEEEEESSSCEEC
T ss_pred             ccceEEEEEEecCCCccC--C-C---eEEEecCCCEEEEEEEe-ecCCCcEeEEEECCEEcc
Confidence            345678899999985422  1 1   24689999999999996 567776 99999987753

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.73  E-value=4.7e-08  Score=56.44  Aligned_cols=53  Identities=21%  Similarity=0.350  Sum_probs=42.8

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..+|..|.+.....    .+.+|+.++|.|.+.+ .| +.|+||++|+.+.
T Consensus        99 ~~~~~l~V~~~~~~p~i~~~~~----~~~~g~~v~l~C~~~~-~p-p~i~W~~~g~~l~  151 (208)
T 3r4d_A           99 QATVRFHVHQPVTQPFLQVTNT----TVKELDSVTLTCLSND-IG-ANIQWLFNSQSLQ  151 (208)
T ss_dssp             EEEEEEEEECCCCCCEEEESCS----SCCTTCCEEEEEECSC-TT-CEEEEEETTEECC
T ss_pred             EEEEEEEeccCCCCCEEecCCc----eEeeCCCEEEEEECCC-CC-CceEEEECCEeCC
Confidence            3457899999988888876544    2889999999999965 45 7999999998864

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.73  E-value=1.6e-07  Score=53.26  Aligned_cols=54  Identities=24%  Similarity=0.459  Sum_probs=42.0

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .+..+.|.|..+|.   +...+  ....+.+|+.++|.|.+. +.|.+ .++||++|..+.
T Consensus        87 ~~~~~~l~V~~~p~---~~~~~--~~~~~~~g~~~~l~C~~~-g~p~p~~v~W~~~~~~~~  141 (182)
T 1rhf_A           87 ISQPVWLTVEGVPF---FTVEP--KDLAVPPNAPFQLSCEAV-GPPEPVTIVWWRGTTKIG  141 (182)
T ss_dssp             ECCCEEEEEECSCE---EEECC--CCEEECTTCCEEEEEEEE-CSSSCCEEEEEETTEECS
T ss_pred             EEEEEEEEEecCCe---EEecC--cceEecCCCEEEEEeEec-CCCCCCEEEEEcCCeECC
Confidence            45678999998874   33322  236789999999999996 47888 999999998863

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.73  E-value=5e-08  Score=64.32  Aligned_cols=55  Identities=22%  Similarity=0.346  Sum_probs=43.6

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcE-EEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEI-TLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~-~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...++|+|..+|..|.|.....    .+.+|... .|+|.+.+++|.+.|+|||||+++.
T Consensus       460 ~~~~~l~V~~~~~~p~i~~~~~----~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~  515 (581)
T 3o3u_N          460 KSNYRVRVYQIPGKPEIVDSAS----ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLV  515 (581)
T ss_dssp             EEEEEEEEEBCCCCCEEESCCS----EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECC
T ss_pred             EEEEEEEEEcCCCCCEEEcCCc----ccccCCceeEEEEECCCCCCCCeEEEEECCEECC
Confidence            3468999999999998876543    35555554 6799998888999999999999874

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.72  E-value=7.2e-08  Score=56.31  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=41.7

Q ss_pred             CCCEEEEEEcC----CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAP----PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~p----P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..+    |..|.+...+.  ...+.+|+.++|.|.+. ++|.+.|+|||+|+.+.
T Consensus        91 ~~~~~l~V~~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~-g~p~p~v~W~~~g~~l~  150 (212)
T 2yd6_A           91 SVSTRLTVLREDQIPRGFPTIDMGPQ--LKVVERTRTATMLCAAS-GNPDPEITWFKDFLPVD  150 (212)
T ss_dssp             EEEEEEEEECGGGCCTTCCEEEECCC--CEEEETTSCEEEEEEEE-CSSCCEEEEEETTEEC-
T ss_pred             EEEEEEEEeccCccCCCcceeecCCc--ceeEecCCCEEEEEEec-CCCCCeEEEEECCcccc
Confidence            44578888864    44456654332  35688999999999996 57999999999998764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.71  E-value=1.6e-08  Score=58.95  Aligned_cols=58  Identities=21%  Similarity=0.335  Sum_probs=40.8

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|.|..++..|.+...+..  ....+|+.++|+|.+.++.|++ .|+|||||+++.
T Consensus        97 ~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~  155 (210)
T 1lk3_L           97 FGAGTKLELKRADAAPTVSIFPPS--TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERR  155 (210)
T ss_dssp             ECCCEEEEECCCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             eCCCEEEEEcCCCcCCeEEEECCc--hhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCC
Confidence            345678999875545565543221  1234799999999998766764 999999999864

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.71  E-value=2e-08  Score=59.57  Aligned_cols=57  Identities=16%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEE-CCEEc
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYR-GNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~-~~~~l   63 (65)
                      ++..+.|+|.. ++..|.|.......  .+.+|+.++|.|.+.+..|.+ .|+|++ ||+.+
T Consensus       111 ~~~~~~L~V~~~~~~~P~i~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l  170 (223)
T 1dee_B          111 WGQGTLVTVSSGSASAPTLFPLVSCE--NSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDI  170 (223)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEEECTT--CCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBC
T ss_pred             ecCcEEEEEccCCCCCCEEEEecCCc--ccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCcc
Confidence            45678999984 55566665321100  357899999999998877877 999999 88765

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.70  E-value=1.4e-08  Score=59.47  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=41.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..++..|.+......  ....+|+.++|.|.+.++.|++ .|+|||||+++.
T Consensus       100 ~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  158 (216)
T 2xzc_L          100 FGGGTKLEIKRTVAAPSVFIFPPS--DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  158 (216)
T ss_dssp             EBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             ECCCEEEEEcCCCCCCceEEeCCC--hhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence            456778999766555666542221  0124688999999998877765 999999999863

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.70  E-value=1.3e-08  Score=54.03  Aligned_cols=50  Identities=18%  Similarity=0.489  Sum_probs=28.5

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.|.|..+|..   ...  ...+.+.+|+.++|.|.+. +.|.+.|.|||+|..+
T Consensus         2 ~~~v~~~~~P~~---~~~--~~~~~v~~G~~v~l~C~~~-g~p~p~i~W~~~~~~~   51 (108)
T 3kvq_A            2 QLTVLERVAPTI---TGN--LENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETL   51 (108)
T ss_dssp             ---------CCC---BSC--CCCEEEETTCCEEEECBCC-----CCEEEEESSSBC
T ss_pred             ceeECccCCCce---ecC--CCCeEEeCCCeEEEEEECc-CcCCCeEEEEECCeEc
Confidence            355666667643   222  2346889999999999985 5799999999998765

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.70  E-value=8.8e-08  Score=54.98  Aligned_cols=53  Identities=15%  Similarity=0.349  Sum_probs=40.7

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +..+.|.|..+|.   +...+  ....+.+|+.++|.|.+.+ +|.+ .|+|||+|..+.
T Consensus        96 ~~~~~l~V~~~p~---~~~~~--~~~~~~~g~~~~l~C~~~g-~p~p~~v~W~~~~~~~~  149 (195)
T 2c5d_C           96 SQPGYVGLEGLPY---FLEEP--EDRTVAANTPFNLSCQAQG-PPEPVDLLWLQDAVPLA  149 (195)
T ss_dssp             CCCEEEEECCSCE---EEECC--CCEEECTTCCEEEEEEEEC-SSCCCEEEEEESSCBSS
T ss_pred             cccEEEEEecCCe---EEcCC--CcEEEcCCCEEEEEeECCC-CCCCCEEEEEECCEecc
Confidence            4558999988873   33322  2367899999999999955 6888 999999998764

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.69  E-value=1.4e-07  Score=55.51  Aligned_cols=56  Identities=18%  Similarity=0.443  Sum_probs=42.9

Q ss_pred             CCCEEEEEEcCCCc------------cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSS------------IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~------------~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +..+.|+|..+|..            +.+...+.  ...+.+|+.++|.|.+ .++|.+.++||++|..+.
T Consensus        93 s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~  160 (218)
T 3k0w_A           93 SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT--SQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLT  160 (218)
T ss_dssp             CCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCC--CEEECTTCCEEEECEE-EBSSCCEEEEEETTEECT
T ss_pred             eeEEEEEEEccCcccccccccccCCCceEEECCC--ceeecCCCcEEEEEEe-cccCCCeEEEEECCEECC
Confidence            56689999876532            45544332  3578999999999999 457999999999998864

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.69  E-value=1.7e-08  Score=58.68  Aligned_cols=58  Identities=17%  Similarity=0.299  Sum_probs=41.2

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|.|...+..|.+......  ....+|+.++|.|.+.++.|++ .|+|||||+++.
T Consensus        98 ~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  156 (213)
T 3d9a_L           98 FGGGTKLEIKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  156 (213)
T ss_dssp             ECCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             eCCCEEEEEecCCCCceeEeECCC--hhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence            455678999875545565442221  1234789999999998767776 899999998764

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.68  E-value=1.3e-08  Score=59.67  Aligned_cols=57  Identities=23%  Similarity=0.380  Sum_probs=41.9

Q ss_pred             cCCCEEEEEEcC-CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAP-PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~p-P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      ++..+.|+|... +..|.+......  ..+.+|+.++|.|.+.+++|.+ .|+|+|+|+.+
T Consensus       109 ~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  167 (219)
T 1c1e_H          109 WGQGTSLTVSSAKTTPPSVYPLAPG--SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  167 (219)
T ss_dssp             ECCCEEEEECCCCCBCCEEEEECCC--SSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             ecCceEEEEecCCCCCCeEEEecCc--cccccCCeEEEEEEcccccCCCeEEEEEeCCccc
Confidence            556789999873 455666432211  1357899999999998768988 99999998753

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.68  E-value=6.3e-08  Score=56.01  Aligned_cols=55  Identities=11%  Similarity=0.145  Sum_probs=40.9

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|..++..|.+...+.   ..+.+|+.++|.|.+.+  +++.+.|||+|+.+
T Consensus        84 ~~s~~~~l~V~~~~~~p~i~~~p~---~~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~  138 (188)
T 1oll_A           84 EPSNLLDLVVTEMYDTPTLSVHPG---PEVISGEKVTFYCRLDT--ATSMFLLLKEGRSS  138 (188)
T ss_dssp             CCCCCEEEEEESCSCCCEEEEESC---SEEETTCEEEEEEECSS--SCSEEEEEEESSSC
T ss_pred             CCCCceEEEecccCCCCeEEECCC---CccccCCEEEEEEEcCC--CCCEEEEEECCccc
Confidence            346778999987655667764443   25789999999999854  55799999998643

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.68  E-value=1.6e-08  Score=59.53  Aligned_cols=57  Identities=25%  Similarity=0.381  Sum_probs=41.7

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      ++..+.|+|.. ++..|.+.......  .+.+|+.++|.|.+.+..|.+ .|+|+++|+.+
T Consensus       112 ~~~~~~l~V~~~~~~~P~i~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  170 (222)
T 1q9r_B          112 WGQGTLVTVSAAKTTPPSVYPLAPGS--AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  170 (222)
T ss_dssp             BCCCEEEEECSSCCBCCEEEEECCCS--CCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             eCCceEEEeccCCCCCCeEEEccccc--cccCCCcEEEEEEEccEECCCCEEEEecCCeEc
Confidence            55678999986 34556665432211  356899999999998777888 99999998654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.67  E-value=1e-07  Score=63.40  Aligned_cols=54  Identities=13%  Similarity=0.223  Sum_probs=43.1

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +..+.|+|..+|..+.+..    ....+.+|+.++|.|.+. +.|++.|+|||||..+.
T Consensus       548 s~~~~l~V~~~p~~~~~~~----~~~~v~~g~~~~l~C~~~-g~p~p~v~W~~~g~~i~  601 (642)
T 1e07_A          548 SDPVTLDVLYGPDTPIISP----PDSSYLSGANLNLSCHSA-SNPSPQYSWRINGIPQQ  601 (642)
T ss_pred             CCCEEEEEEeCCCcceecC----CceeEEcCCcEEEEEEec-cCCCCeEEEEECCEECc
Confidence            3468999998887665532    225789999999999995 57999999999999874

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.67  E-value=1.3e-08  Score=54.19  Aligned_cols=32  Identities=22%  Similarity=0.579  Sum_probs=26.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.  .|.+.++|||||+++.
T Consensus        16 v~~~~g~~v~l~C~v~--~p~~~v~W~k~g~~i~   47 (91)
T 2lvc_A           16 VHAITSECVMLACEVD--REDAPVRWYKDGQEVE   47 (91)
T ss_dssp             EECCTTCCEEEEEECS--CTTSCCEEEETTSCCC
T ss_pred             EEEECCCcEEEEEEEC--CCCcEEEEEECCEEee
Confidence            4567899999999983  3888999999998764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.67  E-value=6.1e-08  Score=57.95  Aligned_cols=57  Identities=16%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecC-CcEEEEEEecCCCCCc-eEEEEE-CCEEc
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIREN-QEITLECLVKNAKPAA-KIVWYR-GNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G-~~~~L~C~~~~~~P~~-~i~W~~-~~~~l   63 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+| +.++|.|.+.++.|.+ .|+|++ ||+.+
T Consensus       110 ~~~~~~L~V~~~~~~~P~v~~~~p~--~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l  170 (232)
T 1dn0_B          110 WGQGTLVTVSSGSASAPTLFPLVSC--ENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDI  170 (232)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEEECC--------CCSEEEEEEEEEEBSSCCEEEEEETTSCEE
T ss_pred             cccceEEEEccCCCCCCceEEeccc--cccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCce
Confidence            56678999987 5555666432210  134578 9999999999877876 999999 88765

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.67  E-value=1.8e-08  Score=59.56  Aligned_cols=54  Identities=20%  Similarity=0.380  Sum_probs=40.2

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.|.|..+|..+.+.. .....+.+.+|+.++|.|.+.+ .|.|.|+|||+++.+
T Consensus       124 ~~~l~V~~~~~~~~~~~-~~~~~~~v~~g~~v~L~C~~~g-~p~p~v~W~k~~~~~  177 (250)
T 2fbo_J          124 SVVLKVTGHTPSNNVHV-STAEVVQVDEGNDITMTCPCTD-CANANVTWYTGPTFF  177 (250)
T ss_dssp             EEEEEETTTSCCSCCEE-CCCSEEECCTTCCEEECCCEES-CTTCEEEEEEEEECS
T ss_pred             eEEEEEeccCCCCeEEE-ecCceEEecCCCcEEEEEEecC-CCCCeeEEEeCCCcc
Confidence            68899988744444333 2234567888999999999965 577799999998765

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.66  E-value=1.9e-08  Score=58.04  Aligned_cols=55  Identities=15%  Similarity=0.279  Sum_probs=41.2

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +..+.|+|.+.|.....    ......+.+|+.++|.|.+..++|.+.++||++|+.+.
T Consensus       100 ~~~~~l~V~~~~~~~~~----~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~  154 (212)
T 2v9r_A          100 SHDASLEVAILRDDFRQ----NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD  154 (212)
T ss_dssp             CCCEEEEECEECSSCSB----CCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEEC
T ss_pred             ecceEEEEEecccccee----CCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCC
Confidence            45678888875433211    12235789999999999986678999999999998864

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.66  E-value=1e-07  Score=56.83  Aligned_cols=56  Identities=13%  Similarity=0.137  Sum_probs=42.8

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|...+..|.+...+.   ..+.+|+.++|.|.+. +.|++.+.|||+|..+
T Consensus        91 ~~s~~~~l~V~~~~~~P~i~~~p~---~~v~~G~~v~L~C~~~-~~~~~~~~W~k~g~~~  146 (218)
T 1uct_A           91 RYSDTLELVVTGLYGKPFLSADRG---LVLMPGENISLTCSSA-HIPFDRFSLAKEGELS  146 (218)
T ss_dssp             EECCCEEEEEECSSCCCEEEESSC---SEECTTCCCEEEEECS-SSCCSEEEEEETTCSS
T ss_pred             eecCCEEEEEcCcccCCEEEeCCC---CccCCCCCEEEEEeCC-CCCCCEEEEEECCCcc
Confidence            446778999987666677765443   2678999999999653 4678899999998754

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.66  E-value=1.9e-07  Score=56.08  Aligned_cols=58  Identities=22%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             cCCCEEEEEEcC-CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAP-PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~p-P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+..+.|+|... +..|.+...+.  ...+.+|+.++|.|.+.+++|.+.|+|+++|+.+.
T Consensus       171 ~~~~~~l~V~~~~~~~p~i~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~  229 (289)
T 3ejj_X          171 TSTGIWLKVNRVHPEPPQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLE  229 (289)
T ss_dssp             ECCCEEEEEESSCCCCCEEEEESS--SEECCSSSCEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             ccccEEEEEEECCCCCCeEEecCC--ceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEee
Confidence            456788999842 23445544332  24567999999999998768999999999998763

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.66  E-value=2.3e-08  Score=58.14  Aligned_cols=58  Identities=24%  Similarity=0.381  Sum_probs=41.7

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      ++..+.|.|..++..|.+...+..  .....|+.++|.|.+.++.| .+.|+|||||+.+.
T Consensus        98 ~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  156 (213)
T 3r06_A           98 FGPGTKLEIKRADAKPTVSIFPPS--SEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKR  156 (213)
T ss_dssp             ECCCEEEEECCCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             EcCCceEEEeccCCCceeeeeCCC--ceecCCCCcEEEEEEeeecCCceEEEEEECCcccC
Confidence            466789999666666666543321  13456888999999987665 46899999998764

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.66  E-value=8.3e-08  Score=50.90  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.+  |++.|+|||||+++.
T Consensus        15 ~~v~~G~~v~l~C~v~~--~~~~v~W~k~g~~i~   46 (93)
T 1waa_A           15 VEVFVGETAHFEIELSE--PDVHGQWKLKGQPLA   46 (93)
T ss_dssp             EEEETTSCEEEEEEESS--SSCCCEEEETTEECC
T ss_pred             eEEeCCCCEEEEEEECC--CCCeEEEEECCEECc
Confidence            57899999999999953  557899999999874

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.66  E-value=6.5e-08  Score=50.78  Aligned_cols=32  Identities=28%  Similarity=0.577  Sum_probs=28.0

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      ..+.+.+|+.++|.|.+.++.|.+.|+|||++
T Consensus        18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~   49 (98)
T 1gl4_B           18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLH   49 (98)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGG
T ss_pred             CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCC
Confidence            45678999999999999866899999999974

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.66  E-value=1.1e-07  Score=55.44  Aligned_cols=57  Identities=16%  Similarity=0.340  Sum_probs=42.6

Q ss_pred             cCCCEEEEEEcCCCc----cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSS----IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~----~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..++..    |.+...+  ....+.+|+.++|.|.+. ++|++.|+||+++..+.
T Consensus        92 ~~~~~~l~V~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~  152 (212)
T 2yd1_A           92 VSADATLTIYEGDKTPAGFPVITQGP--GTRVIEVGHTVLMTCKAI-GNPTPNIYWIKNQTKVD  152 (212)
T ss_dssp             EEEEEEEEEECTTCSCTTCCEEEECC--CCEEEETTCCEEECCEEE-CSSCCEEEEEETTEECC
T ss_pred             EEeeEEEEEecccCCCCCCCeeEeCC--CceEeecCCeEEEEEEec-cCCCCeEEEEECCeEcc
Confidence            345678899876432    4555433  235788999999999995 57999999999998864

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.66  E-value=7.4e-08  Score=57.93  Aligned_cols=45  Identities=16%  Similarity=0.313  Sum_probs=36.9

Q ss_pred             cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728          15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK   64 (65)
Q Consensus        15 ~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~~~~l~   64 (65)
                      .||..|.+... .    .+.+|+.++|.|.+.+++|++  .|+|||||+.+.
T Consensus         2 ~P~~~p~~~~~-~----~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~   48 (265)
T 2oz4_A            2 LPATPPQLVSP-R----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN   48 (265)
T ss_dssp             CCSSCCEEECC-S----EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECC
T ss_pred             CCCCCCccccC-c----eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECC
Confidence            46777777642 2    689999999999998778877  999999999874

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.66  E-value=5.8e-08  Score=56.51  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.|+|+.++..|.+..          +++.++|+|.+..+ |.+.|+||+|++.+
T Consensus        96 ~~~~L~V~~~~~~P~i~~----------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l  141 (180)
T 2dru_A           96 WKITMEVYEMVSKPMIYW----------ECSNATLTCEVLEG-TDVELKLYQGKEHL  141 (180)
T ss_dssp             EEEEEEEECCCCCCEEEE----------EGGGTEEEEECSSC-TTCEEEEEETTEEE
T ss_pred             EEEEEEEECCCCCCEEEe----------cCCCEEEEEEeCCC-CCCEEEEEECCeEC
Confidence            457899998887777642          34569999999666 99999999999875

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.65  E-value=9.3e-08  Score=54.51  Aligned_cols=52  Identities=15%  Similarity=0.344  Sum_probs=39.6

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ...+.|.|..+|.   +...+  ....+.+|+.++|.|.+. ++|++.++||+++..+
T Consensus        90 ~~~~~l~v~~~p~---~~~~~--~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~  141 (191)
T 1epf_A           90 EATVNVKIFQKLM---FKNAP--TPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDV  141 (191)
T ss_dssp             EEEEEEEEECCSE---EEECC--SSEECCTTSCEEECCEEE-CSSCCEEEEEETTEEG
T ss_pred             EEEEEEEeecCce---EecCC--CcEeecCCCeEEEEEEEC-CCCCCEEEEEECCEEe
Confidence            3456788877763   33222  235789999999999997 6799999999999876

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.65  E-value=6.2e-08  Score=55.27  Aligned_cols=55  Identities=18%  Similarity=0.365  Sum_probs=41.5

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.|.|...+..|.+....  ....+.+|+.++|.|.+. ++|.+.++|||+|+.+.
T Consensus        91 ~~~~l~v~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~  145 (194)
T 2a38_A           91 STAELLVKAETAPPNFVQRL--QSMTVRQGSQVRLQVRVT-GIPTPVVKFYRDGAEIQ  145 (194)
T ss_dssp             EEEEEEEECCCEEEEEEECC--CCEEECTTEEEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             EEEEEEEccCCCCCEEEeCC--ccEEEcCCCEEEEEEEEE-EecCCeEEEEECCEECC
Confidence            34678888655555555433  235789999999999995 57999999999998764

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.64  E-value=6.6e-08  Score=50.57  Aligned_cols=34  Identities=15%  Similarity=0.454  Sum_probs=29.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.+|+.++|.|.+. +.|.+.|+|||||+.+.
T Consensus        14 ~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~~~   47 (99)
T 1g1c_A           14 SQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIE   47 (99)
T ss_dssp             CEEEETTSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             ceEEcCCCcEEEEEEEE-EeCCCEEEEEECCEECC
Confidence            35789999999999996 57999999999998864

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.63  E-value=5.7e-08  Score=56.54  Aligned_cols=58  Identities=24%  Similarity=0.407  Sum_probs=39.1

Q ss_pred             cCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|.|...+ ..|.+......  ....+|+.++|.|.+.+..|++ .|+|||||+++.
T Consensus       100 ~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  159 (212)
T 1q0x_L          100 FGGGTKLTVLGQPKSSPTVTLFPPS--SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT  159 (212)
T ss_dssp             ECCCEEEEECCSCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCCeEEEEecCCCCCCeeEEeCCC--HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC
Confidence            4566788886433 34455432221  1235789999999998766664 999999998763

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.63  E-value=1.7e-08  Score=58.82  Aligned_cols=58  Identities=28%  Similarity=0.489  Sum_probs=41.1

Q ss_pred             cCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ++..+.|.|...+ ..|.+......  ..+.+|+.++|.|.+.+..|+ +.|+|||||+++.
T Consensus        98 ~~~~~~l~V~~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  157 (212)
T 1nfd_E           98 FGSGTQLTVLRGPKSSPKVTVFPPS--PEELRTNKATLVCLVNDFYPGSATVTWKANGATIN  157 (212)
T ss_dssp             ECCCEEEEEECCCCBCCEEECCCCC--HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCceEEEEccCCCCCCEEEeeCCc--hHhccCCceEEEEEEEeeECCccEEEEEECCeEcC
Confidence            4566888887544 34555543321  124679999999999877676 8999999998863

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.63  E-value=8.5e-09  Score=59.17  Aligned_cols=58  Identities=12%  Similarity=0.173  Sum_probs=39.8

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..+|....-........+.+.+|+.++|.|.+. ++|++.|+|||+++.+.
T Consensus        89 ~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~  146 (197)
T 2j8h_A           89 SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKPDPVITWQKGQDLID  146 (197)
T ss_dssp             EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEE-EESCCEEEEEESSCEEC
T ss_pred             eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEE-ecCCCcEEEEECCEEee
Confidence            44578888876532110001112345788999999999996 57999999999998763

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.62  E-value=1.9e-08  Score=58.76  Aligned_cols=55  Identities=22%  Similarity=0.375  Sum_probs=40.1

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l   63 (65)
                      ...+.|.|..++..|.+...+.   ..+.+|+.++|.|.+..+.|.+.|+|++ ++..+
T Consensus        98 ~~~~~l~V~~~~~~p~i~~~~~---~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~  153 (222)
T 4i0k_A           98 SAAVSLQVAAPYSKPSMTLEPN---KDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL  153 (222)
T ss_dssp             CCCCCCCCCBCCCCCEEECCC--------CCSEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             eEEEEEEEEcCCCCCcEEeCCC---ceecCCceEEEEEecccccCCCeEEEEcCCCccC
Confidence            4456788888888888765443   2578899999999997788999999999 45443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.62  E-value=5.6e-08  Score=50.94  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||||+.+.
T Consensus        14 ~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~g~~~~   47 (100)
T 2kdg_A           14 NMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQ   47 (100)
T ss_dssp             CEEEETTCCEEEEEECE-EESCCEEEEEETTEEEC
T ss_pred             CEEecCCCEEEEEEEEE-eeCCCEEEEEECCEECc
Confidence            46789999999999986 57999999999998764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.62  E-value=2.9e-07  Score=54.52  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+..+.|+|..+|.  .+....    ..+.+|+.++|.|.+..+.|.+.++|||+|+.+
T Consensus        72 ~s~~~~l~v~~~~~--~~~~~~----~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~  124 (262)
T 3rjd_A           72 RSDPIQLEIHRGWL--LLQVSS----RVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF  124 (262)
T ss_dssp             CCCCEEEEEECSSE--EEEESC----SEEETTSCEEEEEEEGGGCCCEEEEEEETTEEE
T ss_pred             ccccEEEEEeccce--EecCCC----eEEecCCeEEEEEEccCCCCCceEEEEECCccc
Confidence            34568899987652  232222    267899999999999777899999999999876

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.61  E-value=3.2e-08  Score=58.68  Aligned_cols=56  Identities=21%  Similarity=0.382  Sum_probs=40.9

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..+.|+|.. ++..|.+.......  .+.+|+.++|.|.+.+..|.+ .|+|+|+++.
T Consensus       113 ~~~~~~L~V~~~~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  170 (225)
T 1op3_H          113 WGPGTVVTVSPASTKGPSVFPLAPSS--KSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  170 (225)
T ss_dssp             ECCCEEEEEESCSCBCCEEEEECCCT--TCCCCCEEEEEEEEEEEBSSCCEEECCTTSCC
T ss_pred             ecCCEEEecccCCCcCCeEEEecccc--cccCCCcEEEEEEEEeEECCCeEEEEecCCCc
Confidence            45678999997 44556664322111  246899999999998777876 9999999864

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.61  E-value=2.4e-08  Score=53.79  Aligned_cols=53  Identities=21%  Similarity=0.322  Sum_probs=37.4

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|.  .+...+  ....+.+|+.++|.|.+.+ .  +.++||||++.+.
T Consensus         7 ~~~~~~l~V~~~pp--~~~~~~--~~~~v~~G~~v~l~C~~~~-~--p~v~W~k~~~~l~   59 (113)
T 2edh_A            7 GRTSAMLTVRALPI--KFTEGL--RNEEATEGATAVLRCELSK-M--APVEWWKGHETLR   59 (113)
T ss_dssp             CCCCCCCCCCCSCC--CEEECC--CCCEECTTSCEEEEEEESS-C--CCCEEEESSSBCC
T ss_pred             CcEEEEEEEEcCCC--cccccC--CceEEeCCCeEEEEEEECC-C--CcEEEEECCEECC
Confidence            34567888886652  333222  2347899999999999954 2  6899999998763

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.61  E-value=7.5e-08  Score=50.75  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=29.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||||+.+.
T Consensus        17 ~~~v~~G~~v~l~C~~~-g~p~p~i~W~k~~~~~~   50 (103)
T 3qp3_A           17 SHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQ   50 (103)
T ss_dssp             CEEEETTCCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             ceEEeCCCeEEEEEEEE-ecCCCEEEEEECCEECC
Confidence            35789999999999996 47999999999998864

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=7.7e-08  Score=50.56  Aligned_cols=43  Identities=16%  Similarity=0.348  Sum_probs=32.9

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .|.+...+  ..+.+.+|+.++|.|.+. ++|.+.|+|||+++.+.
T Consensus         8 ~P~i~~~p--~~~~v~~G~~~~l~C~~~-g~p~p~v~W~~~~~~~~   50 (100)
T 2edj_A            8 PPIILQGP--ANQTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFP   50 (100)
T ss_dssp             SCEEEECC--CCEEEESSSEEEECCEEE-CSSCCEEEEEESSSEES
T ss_pred             CCEEEeCc--CCEEEcCCCcEEEEEEEE-EcCCCEEEEEECCEECC
Confidence            34554333  235788999999999996 57999999999997764

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.61  E-value=4.4e-08  Score=53.15  Aligned_cols=47  Identities=19%  Similarity=0.447  Sum_probs=32.0

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ++|+|.+||.....   ..     ........|.|.+.+ +|.+.|+|||||+.+.
T Consensus         1 v~L~V~~pP~i~~~---~~-----~~~~~~~~l~C~~~g-~P~p~i~W~k~g~~l~   47 (118)
T 1wwc_A            1 VALTVYYPPRVVSL---EE-----PELRLEHCIEFVVRG-NPPPTLHWLHNGQPLR   47 (118)
T ss_dssp             ---CCCCCCCCCCC---CC-----CCCCCEEEEEEEEEC-SSCCEEEEEETTEECC
T ss_pred             CEEEEecCCceecc---CC-----CeeccceEEEEEeee-eCCCeEEEEECCEECC
Confidence            47889999974332   21     112255789999965 8999999999999874

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.60  E-value=4.7e-09  Score=66.18  Aligned_cols=56  Identities=18%  Similarity=0.342  Sum_probs=7.9

Q ss_pred             ccCCCEEEEEEcCCCc-cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPPSS-IEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~-~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~~~~l~   64 (65)
                      ..+.+..|+|+++|.. +.+.. +.    .+.+|+.++|+|.+.+.+|++  .|.|++||+.+.
T Consensus       175 ~~s~~~~L~V~~~P~~~~~~~~-p~----~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~  233 (291)
T 1mq8_A          175 NTSAPYQLQTFVLPATPPQLVS-PR----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN  233 (291)
T ss_dssp             ECCCCEECBC------------------------------------------------------
T ss_pred             ccccceEEEEEecCCCCceecC-Cc----CccCCCeEEEEEEcCCCCCCcccEEEEEECCEecC
Confidence            3567889999998654 44433 22    688999999999997766763  699999998763

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.60  E-value=6.7e-08  Score=62.69  Aligned_cols=53  Identities=17%  Similarity=0.207  Sum_probs=40.1

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.|+|..+|.   +...+....+.+.+|+.++|.|.+. +.|++.|+|||||++|
T Consensus       315 ~~~~L~V~~~p~---i~~~~~~~~~~v~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l  367 (423)
T 3qs7_E          315 QSALVTIVEKGF---INATNSSEDYEIDQYEEFCFSVRFK-AYPQIRCTWTFSRKSF  367 (423)
T ss_dssp             EEEEEEEESSCE---EEEC---CEECCCTTCCCCEEEEEE-EESCCEEEEEETTEEE
T ss_pred             ceEEEEEEeCCc---ceEcCCCccEEecCCCeEEEEEEEE-EcCCCeEEEEECCEEC
Confidence            457899998763   3333322346788999999999995 5799999999999987

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.60  E-value=1.2e-07  Score=54.88  Aligned_cols=55  Identities=15%  Similarity=0.205  Sum_probs=42.3

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|..++..|.+...+..   .+.+|+.++|.|.+.+  +++.+.|||+|..+
T Consensus        85 ~~s~~~~l~V~~~~~~p~~~~~~~~---~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~  139 (196)
T 3p2t_A           85 QPSDPLELVMTGAYSKPTLSALPSP---LVTSGKSVTLLCQSRS--PMDTFLLCKERAAH  139 (196)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEESCS---EECTTCCEEEEEEEEE--EEEEEEEEETTCCC
T ss_pred             CCCccEEEEecCCCCCCEEEeCCcc---eecCCCeEEEEEecCC--CCCEEEEEeCCCcc
Confidence            4567789999887767777654432   5789999999999865  45689999998754

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.60  E-value=8.8e-08  Score=50.07  Aligned_cols=33  Identities=21%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+. +.|.+.|.|||+++.+.
T Consensus        15 ~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~~   47 (99)
T 1u2h_A           15 QSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVR   47 (99)
T ss_dssp             EEEETTCCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             eEecCCCEEEEEEEEE-EcCCCEEEEEECCEECC
Confidence            4789999999999995 47889999999998864

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.60  E-value=1.9e-07  Score=56.10  Aligned_cols=53  Identities=23%  Similarity=0.458  Sum_probs=40.4

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..+|..   ..  .+....+.+|+.++|.|.+. +.|++.++||++|+.+.
T Consensus       182 ~~~~~l~V~~~p~~---~~--~~~~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~~~~~~  234 (284)
T 2rik_A          182 SSSTSLKVKEPPVF---RK--KPHPVETLKGADVHLECELQ-GTPPFQVSWHKDKRELR  234 (284)
T ss_dssp             EEEEEEEEECCCBC---CS--CCCCEEECTTCCEEEEEECB-SSSCCEEEEEETTEEEC
T ss_pred             eEEEEEEEecCCcc---ee--CCCcceecCCCeEEEEEEEE-ecCCCEEEEEECCEECc
Confidence            44678899888743   21  12235788999999999995 57999999999998763

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.59  E-value=1.5e-07  Score=54.27  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.|+|..++..|.+..          .+..++|+|.+.+ .|++.|+|||||+.+.
T Consensus        91 ~~~~l~V~~~~~~p~i~~----------~~~~v~L~C~~~g-~p~p~i~W~~~g~~l~  137 (176)
T 1hng_A           91 KALDLRILEMVSKPMIYW----------ECSNATLTCEVLE-GTDVELKLYQGKEHLR  137 (176)
T ss_dssp             EEEEEEEECCCCCCEEEE----------ETTTTEEEEECSS-CSSCEEEEEETTEEEE
T ss_pred             EEEEEEEeCCCCCCEEEe----------cCCcEEEEEEecC-CCCcEEEEEECCEECC
Confidence            347888998877776642          2445899999865 5779999999998763

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.59  E-value=1.7e-07  Score=57.14  Aligned_cols=58  Identities=14%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             ccCCCEEEEEEcCCC----ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPPS----SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~----~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .....+.|+|..++.    .|.+...+  ....+.+|+.++|.|.+. ++|.+.|+|||+|..+.
T Consensus        89 ~~~~~~~l~V~~~~~~p~~~p~i~~~~--~~~~v~~g~~v~l~C~~~-g~p~~~v~W~k~~~~~~  150 (304)
T 2yd9_A           89 EITVHAKLTVLREDQLPSGFPNIDMGP--QLKVVERTRTATMLCAAS-GNPDPEITWFKDFLPVD  150 (304)
T ss_dssp             EECCEEEEEEECGGGCCTTCCEEEECC--CCEEEETTSCEEECCEEE-CSSCCEEEEEETTEECC
T ss_pred             eEEEEEEEEEeccccCCCCCCeeecCC--ccEEEeCCCeEEEEEECc-cCCCCeEEEEECCEECc
Confidence            345678899987533    25565433  235788999999999995 57999999999998763

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.59  E-value=3.8e-08  Score=57.44  Aligned_cols=56  Identities=23%  Similarity=0.377  Sum_probs=41.2

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..+.|.|.. ++..|.+...+..  ..+.+|+.++|.|.+.+..|.+ .|+|++++..
T Consensus       103 ~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H          103 WGQGTLVTVSAAKTTPPSVYPLAPG--SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             BCCCEEEEECCCCCBCCEEEEECCT--TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cccceEEEeccCCCCCCEEEEecCC--cccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence            45678999984 4555666533311  1357899999999998777888 9999999874

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.58  E-value=5.5e-08  Score=56.57  Aligned_cols=59  Identities=24%  Similarity=0.465  Sum_probs=40.8

Q ss_pred             ccCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      .++..+.|.|...+ ..|.+...+..  ..+.+|+.++|.|.+.+..| .+.++|||||+++.
T Consensus        95 ~~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  155 (211)
T 3tv3_L           95 IFGGGTKLTVLGQPKAAPSVTLFPPS--SEELQANKATLVCLISDFYPGAVTVAWKADSSPVK  155 (211)
T ss_dssp             EECCCEEEEECCSCCBCCEEEEECCC--HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             eECCCceEEEeCCCCcCCeeEecCCc--hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecC
Confidence            35677899998432 34455433321  12347999999999987654 68999999999863

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.58  E-value=3e-08  Score=57.69  Aligned_cols=55  Identities=13%  Similarity=0.308  Sum_probs=40.2

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +..+.|.|.+.|....+  .  .....+.+|+.++|.|.+..++|.+.++|||+|+.+.
T Consensus        97 ~~~~~l~v~~~~~~~~~--~--~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A           97 SRHASLQIAVLRDDFRV--E--PKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             CCCEEEEECEECCSCSB--C--CCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             cccceEEEEEeCCCcEE--C--CCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence            34677888763322211  1  1235789999999999986778999999999998764

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.58  E-value=5.3e-08  Score=58.37  Aligned_cols=58  Identities=17%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..++..|.+......  ..+.+|+.++|.|.+.+..|++ .|+|||||+++.
T Consensus       136 ~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  194 (252)
T 3bkj_L          136 FGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  194 (252)
T ss_dssp             ECCCEEEEECCCCBCCEEEEECCC--HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             ECCCEEEEEeCCCcCcEEEEeCCC--hhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecC
Confidence            455678999765445555442221  1234789999999998877764 899999998763

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.58  E-value=1.7e-07  Score=57.16  Aligned_cols=55  Identities=18%  Similarity=0.373  Sum_probs=41.6

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.|.|.+.+..|.+...+.  ...+.+|+.++|.|.+. ++|++.|+|||||+.+.
T Consensus       193 ~~~~l~v~~~~~~P~~~~~~~--~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~~~~l~  247 (304)
T 2yd9_A          193 SPANLYVRVQNVAPRFSILPM--SHEIMPGGNVNITCVAV-GSPMPYVKWMQGAEDLT  247 (304)
T ss_dssp             CCEEEEEECCCEEEEEEECCC--CBCCCTTCCEEEEEEEE-EESCCEEEEEETTEECS
T ss_pred             ccEEEEEEeeccCCcEEecCC--ceEEcCCCeEEEEEEEe-eeCCCEEEEEECCEECC
Confidence            347888876555556654432  24688999999999996 57999999999999874

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=8.6e-09  Score=54.23  Aligned_cols=34  Identities=24%  Similarity=0.624  Sum_probs=29.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||+|+.+.
T Consensus        20 ~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~g~~~~   53 (99)
T 2yr3_A           20 DCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQ   53 (99)
T ss_dssp             CEEECTTCCEEEECEEE-EESCCCCEEEESSSBCS
T ss_pred             CCEEeCCCeEEEEEEEe-eeCCCeEEEEECCEECc
Confidence            35789999999999995 57999999999987653

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.57  E-value=4.9e-08  Score=58.29  Aligned_cols=59  Identities=29%  Similarity=0.517  Sum_probs=41.0

Q ss_pred             cCCCEEEEEEcC---CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAP---PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~p---P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..+   +..|.+..... ....+.+|+.++|.|.+.+..|+ +.|+|+|||+++.
T Consensus       103 ~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~  165 (238)
T 1bec_A          103 FGPGTRLTVLEDLRQVTPPKVSLFEP-SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH  165 (238)
T ss_dssp             ECCCEEEEEESCGGGCBCCEEEEECC-CSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEEC
T ss_pred             cCCCEEEEEeccCCCCCCCceEEECC-ChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECC
Confidence            456788999874   23455543221 11135689999999999877775 4999999998763

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.57  E-value=3.4e-08  Score=58.48  Aligned_cols=56  Identities=14%  Similarity=0.300  Sum_probs=41.3

Q ss_pred             cCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l   63 (65)
                      ++..+.|+|..++ ..|.|...+.   ..+.+|+.++|.|.+.+..|.  +.|+|+++++.+
T Consensus       108 ~~~~~~L~V~~~~~~~P~v~~~~~---~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H          108 WGQGTLVTVSAESARNPTIYPLTL---PPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECC---CSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             ecCCEEEEecCCCCCCCEEEEeec---ccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence            5677899998643 4456543332   135789999999999887787  899999998643

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.57  E-value=3.5e-07  Score=52.33  Aligned_cols=52  Identities=19%  Similarity=0.314  Sum_probs=39.5

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE--CCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR--GNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~--~~~~l   63 (65)
                      ...+.|.|..+|.   +...+  ....+.+|+.++|.|.+. ++|.+.++||+  +|..+
T Consensus        82 ~~~~~l~V~~~p~---~~~~~--~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~g~~~  135 (190)
T 2wv3_A           82 KANATIEVKAAPD---ITGHK--RSENKNEGQDAMMYCKSV-GYPHPEWMWRKKENGVFE  135 (190)
T ss_dssp             EEEEEEEEECCCE---EEEEC--SEEEEETTSCEEEEEEEE-CSSCCEEEEEEEETTEEE
T ss_pred             cccEEEEEecCCc---ccccC--CcceeeCCCcEEEEEEeC-ccCCCceEEEEcCCCcee
Confidence            3457899998874   33222  235789999999999995 57999999999  77764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.57  E-value=1e-07  Score=54.06  Aligned_cols=53  Identities=19%  Similarity=0.413  Sum_probs=37.8

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|.|..+|.   +..........+.+|+.++|.|.+.+ +|.+.++||++|+.+.
T Consensus        88 ~~~l~v~~~p~---~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~v~W~~~g~~~~  140 (189)
T 2v5t_A           88 DIIVIVNVPPA---ISMPQKSFNATAERGEEMTFSCRASG-SPEPAISWFRNGKLIE  140 (189)
T ss_dssp             EEEEEEEEEEE---EECSCCEEEEETTSCCCEEEECEEEE-ESCCEEEEEETTEECC
T ss_pred             EEEEEecCCCC---cccccccccccccCCCcEEEEEEEcc-CCCCeEEEEECCEECc
Confidence            35666766653   33222222356789999999999964 6999999999998864

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.56  E-value=8.1e-08  Score=51.72  Aligned_cols=34  Identities=12%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.+ +|.+.|+|||+|+.+.
T Consensus        16 ~~~v~~G~~v~l~C~~~g-~p~p~i~W~k~~~~~~   49 (114)
T 2cqv_A           16 DQKVRAGESVELFGKVTG-TQPITCTWMKFRKQIQ   49 (114)
T ss_dssp             SEEEETTCCEEEEEEEES-SSSCEEEEEESSSBCC
T ss_pred             CeEEeCCCeEEEEEEEEc-CCCCEEEEEECCEECc
Confidence            467899999999999964 8999999999997663

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.56  E-value=1.3e-07  Score=56.84  Aligned_cols=53  Identities=17%  Similarity=0.354  Sum_probs=39.1

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|.|..+|.   +..........+.+|+.++|.|.+. ++|.+.++||++|+.+.
T Consensus       186 ~~~l~v~~~p~---~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~g~~~~  238 (291)
T 1qz1_A          186 DIQVIVNVPPT---VQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIE  238 (291)
T ss_dssp             EEEEEEEEEEE---EEESCSEEEEETTSCCCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             EEEEEEecCCc---ccccccccccccccCceEEEEEEEE-EeCCCcEEEEECCEECc
Confidence            45677777763   3333322345788999999999996 47999999999998864

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.56  E-value=4.6e-08  Score=58.11  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=39.3

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+|+.++|.|.+.+..|.+ .|+|+++++.
T Consensus       115 ~~~~~~L~V~~~~~~~P~i~~~~~~--~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~  172 (228)
T 3bae_H          115 WGQGTTLTVSSAKTTAPSVYPLAPV--CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  172 (228)
T ss_dssp             ECCCEEEEECSCCCBCCEEEEECC-------CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             eCCcEEEEecCCCCCCCEEEEeccc--ccccCCCCEEEEEEEccEeCCCEEEEEeeCCcc
Confidence            45678999985 4555666543311  1357899999999998877887 9999999864

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.55  E-value=4.4e-08  Score=58.26  Aligned_cols=59  Identities=29%  Similarity=0.491  Sum_probs=39.9

Q ss_pred             cCCCEEEEEEc---CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFA---PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~---pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..   .+..|.+..... ....+.+|+.++|.|.+.+..|++ .|+|+|||+.+.
T Consensus       107 ~~~~~~l~V~~~~~~~~~P~i~~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  169 (246)
T 4dzb_B          107 FGPGTRLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  169 (246)
T ss_dssp             ECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             EcCCEEEEEecCCCcccCCceEeecC-CchhccCCCcEEEEEEEccCcCCceEEEEEECCEECC
Confidence            45678899986   333444433221 112355699999999998766554 899999998864

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.55  E-value=5.1e-08  Score=55.34  Aligned_cols=34  Identities=21%  Similarity=0.694  Sum_probs=29.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||+|+.+.
T Consensus        50 ~~~v~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~   83 (154)
T 1fhg_A           50 DMEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVK   83 (154)
T ss_dssp             CEEEETTSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             cEEEeCCCeEEEEEEEE-EecCCEEEEEECCEECC
Confidence            36889999999999995 57999999999998864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.55  E-value=6.4e-08  Score=50.43  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECC--EEc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGN--TEL   63 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~--~~l   63 (65)
                      ..+.+.+|+.++|.|.+. |.|.|.|+|||+|  ..+
T Consensus        10 ~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~~~~~~~   45 (93)
T 1wit_A           10 RKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAAL   45 (93)
T ss_dssp             CEEEECTTBCCEEEEEEE-CCSSCEEEEECSTTTCBC
T ss_pred             CceEEeCCCEEEEEEEEE-EcCCCEEEEEECCCCccc
Confidence            356789999999999996 5799999999999  665

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.55  E-value=8.4e-08  Score=56.30  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=40.8

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~   61 (65)
                      ++..+.|+|.. ++..|.+...+..  ..+.+|+.++|.|.+.+..|.+ .|+|++++.
T Consensus       110 ~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B          110 WGQGTSVTVSSATTTAPSVYPLVPG--CSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECCC--SCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             ECCCEEEEEccCCCCCCeEEEcccc--cccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            45778999985 4455666543311  1357899999999998777988 999999886

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.54  E-value=1.5e-07  Score=58.81  Aligned_cols=54  Identities=17%  Similarity=0.284  Sum_probs=40.9

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|..   ...+  ....+.+|+.++|.|.+. ++|.+.|+|||||+.+.
T Consensus       296 ~~~~~~l~V~~~p~~---~~~~--~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~i~  349 (388)
T 2v5m_A          296 ESVETVLTVTAPLSA---KIDP--PTQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGKAIG  349 (388)
T ss_dssp             EEEEEEEEEEEEEEE---EEES--SEEEECTTSCEEEEEEEE-EECCCEEEEEETTEECS
T ss_pred             eeEEEEEEEeCCCcc---ccCC--CcEEecCCCCEEEEEEec-cccCCeEEEEECCEECc
Confidence            345678899887642   2222  245789999999999995 57999999999999874

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.54  E-value=2.2e-07  Score=53.49  Aligned_cols=55  Identities=11%  Similarity=0.195  Sum_probs=40.7

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|...+..|.+...+.   ..+.+|+.++|.|.+.+  +++.+.|||+|+.+
T Consensus        79 ~~s~~~~l~V~~~~~~p~i~~~p~---~~v~~G~~v~l~C~~~~--~~~~~~w~k~g~~~  133 (184)
T 2gi7_A           79 LPSDQLELVATGVFAKPSLSAQPG---PAVSSGGDVTLQCQTRY--GFDQFALYKEGDPA  133 (184)
T ss_dssp             CCCCCEEEEEESSSCCCEEEEECC---CSSCCTTCEEEEEECSS--CCCEEEEEECCCCT
T ss_pred             CCCCCEEEEecCcCCCCEEEeCCC---ceecCCCcEEEEEEcCC--CCcEEEEEECCCcC
Confidence            345678899977665667655442   25789999999999753  34699999999765

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.54  E-value=2.4e-08  Score=58.87  Aligned_cols=58  Identities=17%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..++..|.+...+..  ....+|+.++|.|.+.+..|++ .|+|||||+++.
T Consensus       120 ~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  178 (233)
T 3bqu_C          120 FGGGTNLEIKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  178 (233)
T ss_dssp             BCCCCBC---CCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----
T ss_pred             ecCCEEEEEeCCCCCCEEEEeCCC--HHhhcCCceEEEEEEccccCCceEEEEEECCeeCC
Confidence            345567888875545555442221  1234699999999998766664 899999998753

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.54  E-value=5.9e-08  Score=57.76  Aligned_cols=57  Identities=21%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+|+.++|.|.+.+..|.+ .|+|+|+|+.+
T Consensus       106 ~~~~~~L~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H          106 WGQGTLVTVSAAKTTAPSVYPLAPV--CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECCC--C------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             EcCcEEEEEcCCCCCCCEEEEecCC--ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            45678999986 4455565432211  1356899999999998777877 99999998753

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=1.2e-07  Score=50.62  Aligned_cols=34  Identities=26%  Similarity=0.650  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||+++.+.
T Consensus        17 ~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~~~   50 (110)
T 2dm2_A           17 HYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQIS   50 (110)
T ss_dssp             CEEEETTCCEEEEEEBC-CSSCCEEEEECSSCBCC
T ss_pred             CeEEeCCCeEEEEEEEE-ecCCCEEEEEECCEECC
Confidence            45789999999999995 57999999999998764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=1.3e-07  Score=51.27  Aligned_cols=35  Identities=20%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+. ++|.+.|+|||+|+.+.
T Consensus        32 ~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~   66 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLD   66 (118)
T ss_dssp             SCEEEESSSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             CCEEEECCCEEEEEEEEc-cCCCCEEEEEECCEECC
Confidence            457889999999999985 57999999999998874

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.54  E-value=1.2e-07  Score=57.03  Aligned_cols=55  Identities=20%  Similarity=0.478  Sum_probs=41.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|..   .... .....+.+|+.++|.|.+. +.|.+.++|||+++.+.
T Consensus        87 ~~~~~~l~V~~~p~~---~~~~-~~~~~v~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~  141 (284)
T 2rik_A           87 DSCSAQLGVQEPPRF---IKKL-EPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQ  141 (284)
T ss_dssp             EEEEEEEEEECCCEE---EECC-CSEEEEETTCCEEEEEEEE-SSSCCEEEEEETTEECC
T ss_pred             EEEEEEEEccCCCcc---cccC-CCceEecCCceEEEEEEEe-eeCCCEEEEEECCEECc
Confidence            345678999988743   2111 2234688999999999996 46999999999998764

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.53  E-value=8.7e-08  Score=50.26  Aligned_cols=35  Identities=14%  Similarity=0.453  Sum_probs=30.0

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+. +.|.+.|+|||+|..+.
T Consensus        16 ~~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~~~~~~   50 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFK   50 (100)
T ss_dssp             CEEEECTTCCEEEECCEE-EESCCEEEEEETTEECC
T ss_pred             cEEEecCCCEEEEEEEcc-ccCCCEEEEEECCEEcc
Confidence            346789999999999995 57999999999998764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.53  E-value=2e-07  Score=55.22  Aligned_cols=34  Identities=32%  Similarity=0.676  Sum_probs=29.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+.+..|.+.|+|||||+++.
T Consensus       126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~  159 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREIS  159 (207)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC
T ss_pred             cEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECC
Confidence            4688999999999997655999999999999873

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.53  E-value=3.5e-07  Score=55.56  Aligned_cols=55  Identities=11%  Similarity=0.145  Sum_probs=41.4

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+..+.|.|...+..|.+...+.   ..+.+|+.++|.|.+.+  +++.+.|||+|+.+
T Consensus        87 ~~S~~~~L~V~~~~~~P~i~~~p~---~~v~~G~~vtL~C~~~~--~~~~~~w~k~g~~~  141 (242)
T 1p6f_A           87 EPSNLLDLVVTEMYDTPTLSVHPG---PEVISGEKVTFYCRLDT--ATSMFLLLKEGRSS  141 (242)
T ss_dssp             CCCCCEEEEEECCSCCCEEEEESC---SEEETTCEEEEEEECTT--SCSEEEEEECSSSC
T ss_pred             cCCcceEEEeecccCCCceEccCC---CccCCCCcEEEEEecCC--CCCEEEEEECCCcc
Confidence            456778999987655667765443   25789999999999864  35699999998643

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.53  E-value=7.5e-08  Score=51.99  Aligned_cols=34  Identities=24%  Similarity=0.711  Sum_probs=29.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. |.|.+.|+|||+++.+.
T Consensus        18 ~~~v~~G~~v~L~C~~~-g~P~p~v~W~k~~~~~~   51 (117)
T 2v9t_A           18 DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVE   51 (117)
T ss_dssp             CEEECTTCCEEECCEEE-EESCCEEEEEETTEECC
T ss_pred             CEEEcCCCcEEEEEECC-ccCCCeEEEEECCEecc
Confidence            35789999999999995 57999999999998764

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.53  E-value=7.9e-08  Score=56.60  Aligned_cols=56  Identities=21%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..+.|+|.. +|..|.|.......  .+.+|+.++|.|.+.+..|.+ .|+|+++|+.
T Consensus       107 ~~~~~~L~V~~~~~~~P~i~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  164 (215)
T 1c5d_H          107 WGPGTMVTVSSAQTTAPSVYPLAPGC--GDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS  164 (215)
T ss_dssp             BCCCEEEEECSSCCBCCCEEEECCCS--SCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred             EcCCEEEEecCCCCCCCeEEeccCCh--hhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence            45678999984 45555554322111  257899999999998877887 9999999864

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.52  E-value=2.2e-07  Score=57.06  Aligned_cols=55  Identities=9%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|...+.+|.+...+..   .+.+|++++|.|.+.+  +++.+.|||||+.+
T Consensus        92 ~~S~~~~L~V~~~~~~P~l~~~p~~---~V~~G~~vtL~C~~~~--~~~~~~w~k~g~~~  146 (257)
T 1b6u_A           92 APSDPLDIVITGLYEKPSLSAQPGP---TVLAGESVTLSCSSRS--SYDMYHLSREGEAH  146 (257)
T ss_dssp             CCCCCEEEEEECSSCCCEEECSSCT---TCBTTCEEEEEEECSS--CCSEEEEEETTSSC
T ss_pred             ccCCCEEEecccCCCCcceEccCCC---ccCCCCEEEEEEeCCC--CCcEEEEEECCccc
Confidence            4567789999987777888755432   5789999999999864  34699999998653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.52  E-value=5.7e-07  Score=47.17  Aligned_cols=43  Identities=14%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCC-CCCceEEEEECCEEcc
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNA-KPAAKIVWYRGNTELK   64 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~~~l~   64 (65)
                      |.|...+  ....+.+|+.++|.|.+.+. .|.+.++|||+++.+.
T Consensus        11 P~i~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~   54 (112)
T 3so5_A           11 PQITVQP--ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQ   54 (112)
T ss_dssp             CEEEECC--CCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECT
T ss_pred             CeEEeCC--CCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccc
Confidence            3454433  23578999999999999754 5678999999998764

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.52  E-value=9.4e-08  Score=55.24  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=39.8

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      ...+.|.|..+|..|.+..      ....+|+.++|.|.+. ++|.+.|+|++++..
T Consensus        94 ~~~~~l~V~~~~~~p~~~~------~~~~~g~~v~l~C~~~-g~P~p~v~W~~~~~~  143 (202)
T 3bp6_B           94 YKYLTVKVKASYMRIDTRI------LEVPGTGEVQLTCQAR-GYPLAEVSWQNVSVP  143 (202)
T ss_dssp             EEEEEEEEEBCCCCEEEEE------EECTTTCCEEEEEEEE-EBSCCEEEETTCCSC
T ss_pred             eEEEEEEecCCCCcccEEE------EecCCCCeEEEEEEcc-ccCCceEEEEeCCCC
Confidence            3467889998887776643      2457899999999995 489999999998754

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.52  E-value=1.7e-07  Score=48.83  Aligned_cols=34  Identities=6%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||+|+.+.
T Consensus        15 ~~~v~~G~~~~l~C~~~-g~p~p~v~W~~~g~~~~   48 (99)
T 3puc_A           15 DTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAIT   48 (99)
T ss_dssp             CEEEESSSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             cEEEeCCCcEEEEEEEE-ecCCCEEEEEECCEECc
Confidence            35789999999999995 47899999999998763

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.52  E-value=2.2e-07  Score=50.58  Aligned_cols=34  Identities=29%  Similarity=0.646  Sum_probs=29.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||+++.+.
T Consensus        24 ~~~v~~G~~v~L~C~~~-g~p~p~v~W~k~~~~~~   57 (116)
T 2kkq_A           24 SKKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQ   57 (116)
T ss_dssp             CEEEETTEEEEEEEEBC-CBSCCEEEEEETTEECC
T ss_pred             cEEEeCCCcEEEEEEEe-ccCCCEEEEEECCEECc
Confidence            46889999999999985 57999999999998864

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.51  E-value=1.3e-07  Score=53.75  Aligned_cols=56  Identities=20%  Similarity=0.363  Sum_probs=39.9

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|.|..+|...  ..........+.+|+.++|.|.+. ++|.+.++||+++..+.
T Consensus        90 ~~~~~l~v~~~p~~~--~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~v~W~~~~~~~~  145 (197)
T 3lcy_A           90 ETSSKLLLQATPQFH--PGYPLKEKYYGAVGSTLRLHVMYI-GRPVPAMTWFHGQKLLQ  145 (197)
T ss_dssp             EEEEEEEEEEEEEEC--TTSCCCSEEEEETTSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             eEEEEEEEEcCCCCC--CCccCCcceeecCCCeEEEEEEEe-eeeCCeeEEeECCEECC
Confidence            345677887765321  111223456788999999999986 58999999999998864

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.51  E-value=1.4e-07  Score=50.03  Aligned_cols=33  Identities=21%  Similarity=0.516  Sum_probs=28.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.+  |.+.|+|||||+.+.
T Consensus        16 ~~~v~~G~~v~l~C~~~~--~~~~v~W~k~g~~l~   48 (103)
T 1x44_A           16 DTTAYCGERVELECEVSE--DDANVKWFKNGEEII   48 (103)
T ss_dssp             CEEEETTEEEEEEEECSS--SSCCCEEEETTEECC
T ss_pred             CEEEECCCCEEEEEEecC--CCCeEEEEECCEECC
Confidence            357889999999999954  779999999999874

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=3.6e-07  Score=48.88  Aligned_cols=33  Identities=18%  Similarity=0.434  Sum_probs=28.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.  .|.+.+.|||||+.+.
T Consensus        22 ~~~~~~G~~v~L~C~~~--~p~~~v~W~k~g~~~~   54 (113)
T 2cpc_A           22 YVAAVRLERVVLTCELC--RPWAEVRWTKDGEEVV   54 (113)
T ss_dssp             EEEEETTCCEEEEEEES--CTTCCCEEEETTEECC
T ss_pred             eEEEEcCCeEEEEEEec--CCCCeEEEEECCEECc
Confidence            35788999999999983  7899999999998864

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=1.4e-07  Score=50.47  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+   .|.+.|+|||||+++.
T Consensus        16 ~~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~   47 (100)
T 2yuz_A           16 DQTVNLGKEICLKCEI---SENIPGKWTKNGLPVQ   47 (100)
T ss_dssp             CEEEETTSCCCEEEEC---SSCCCEEEEETTEECC
T ss_pred             ceEEcCCCCEEEEEEe---CCCCeEEEEECCEECC
Confidence            3578999999999998   6889999999999874

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.50  E-value=3.8e-08  Score=58.53  Aligned_cols=52  Identities=17%  Similarity=0.295  Sum_probs=35.5

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      ....+.|+|..||..   ...+  ....+.+|+.++|.|.+. |.|.|.|+|++++..
T Consensus        95 ~~~~~~l~V~~p~~~---~~~~--~~~~v~~g~~~~l~C~~~-G~P~P~v~W~~~~~~  146 (203)
T 4fa8_A           95 VTKQEHLSVVKPLTL---SVHS--ERSQFPDFSVLTVTCTVN-AFPHPHVQWLMPEGV  146 (203)
T ss_dssp             EEEEEEEEEEEEEEE---EEEE--EECCSSCSCCEEEEEEEE-EESCCEEEECCC---
T ss_pred             EEEEEEEEecCCcee---eecc--eeEEEcCCCEEEEEEEcC-CCCCCEEEEEECCee
Confidence            344578888877632   2111  123578999999999996 489999999987643

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.49  E-value=7.8e-08  Score=57.07  Aligned_cols=60  Identities=28%  Similarity=0.492  Sum_probs=41.3

Q ss_pred             ccCCCEEEEEEc---CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFA---PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~---pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .++..+.|+|..   .+..|.+..... ....+.+|+.++|.|.+.+..|++ .++|+|||+++.
T Consensus       103 ~~~~~~~l~V~~~~~~~~~p~~~~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~  166 (240)
T 3q5y_A          103 YFGPGTRLTVLEDLRNVTPPKVSLFEP-SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH  166 (240)
T ss_dssp             EECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             EEcCCEEEEEeccccCCCCCeeEEeCC-chhhcccCCceEEEEEEeeEECCCeEEEEEECCEECc
Confidence            356678899984   334445543221 112355689999999998877766 899999999863

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.49  E-value=1.2e-07  Score=50.84  Aligned_cols=30  Identities=17%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..|..+.|.|.+. |+|.|.|+|||||+++.
T Consensus        14 ~~~~~~~~~c~v~-G~P~P~i~W~k~g~~l~   43 (103)
T 1wwb_X           14 TSDHHWCIPFTVK-GNPKPALQWFYNGAILN   43 (103)
T ss_dssp             CCCCEEEEEEEEE-CSSCCEEEEEETTEEEC
T ss_pred             eECcEEEEEEEEE-EeCCCEEEEEECCEECC
Confidence            4577889999995 58999999999999874

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.48  E-value=8.8e-08  Score=56.91  Aligned_cols=60  Identities=28%  Similarity=0.465  Sum_probs=40.3

Q ss_pred             ccCCCEEEEEEc---CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFA---PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~---pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .++..+.|+|..   .+..|.+..... ....+.+|+.++|.|.+.+..|++ .|+|+|||+.+.
T Consensus       105 ~~~~~~~l~V~~~~~~~~~p~~~~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~  168 (245)
T 4ei6_B          105 FFGPGTRLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  168 (245)
T ss_dssp             EECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             EEcCCcEEEEecccCCCCCceEEEeCC-CcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECC
Confidence            456778899985   122334432211 112355699999999998877765 899999998864

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.48  E-value=2.1e-07  Score=58.11  Aligned_cols=54  Identities=15%  Similarity=0.313  Sum_probs=41.0

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|   .+...+  ....+.+|+.++|.|.+. ++|.+.|+|||||+.+.
T Consensus       301 ~~~~~~l~V~~~p---~~~~~~--~~~~v~~g~~~~l~C~~~-g~p~p~v~W~~~g~~~~  354 (404)
T 3p3y_A          301 IRHTISVRVKAAP---YWLDEP--KNLILAPGEDGRLVCRAN-GNPKPTVQWMVNGEPLQ  354 (404)
T ss_dssp             EEEEEEEEEEEEE---EEEECC--CCEEECTTCCEEEECEEE-EESCCEEEEEETTEEGG
T ss_pred             EEEEEEEEEeCCC---eeeccC--CcceeecCCcEEEEEEcc-ccCCCceEEEECCEecC
Confidence            3446788888876   333322  235788999999999995 47999999999999874

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.47  E-value=8.4e-08  Score=57.27  Aligned_cols=58  Identities=17%  Similarity=0.309  Sum_probs=39.6

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ++..+.|.|..++..|.+......  ....+|+.++|.|.+.+..|+ +.|+|||||+++.
T Consensus       140 ~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  198 (254)
T 2c1o_A          140 FGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  198 (254)
T ss_dssp             EBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEEC
T ss_pred             ecCCEEEEECCCCCCCeeEeecCC--hhhccCCcEEEEEEEecccCCCcEEEEEECCCccc
Confidence            455678888765445555442221  123467899999999876666 5799999998763

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.47  E-value=6e-08  Score=58.52  Aligned_cols=60  Identities=28%  Similarity=0.473  Sum_probs=40.3

Q ss_pred             ccCCCEEEEEEc---CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           4 RYGPRTRLYQFA---PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         4 ~~~~~~~L~V~~---pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .++..+.|+|..   .+..|.+..... ....+.+|+.++|.|.+.+..|++ .|+|+|||+++.
T Consensus       127 ~~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~  190 (268)
T 3pl6_D          127 YFGPGTRLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  190 (268)
T ss_dssp             EECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEEC
T ss_pred             eeCCcEEEEEecCcccccCCceEEeCC-CcccccCCCceEEEEEECcccCCCeEEEEEECCEECC
Confidence            356678899986   222344432221 112355699999999998766655 899999998763

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.47  E-value=8.3e-08  Score=56.44  Aligned_cols=56  Identities=20%  Similarity=0.385  Sum_probs=40.2

Q ss_pred             cCCCEEEEEE-cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEc
Q psy7728           5 YGPRTRLYQF-APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~-~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l   63 (65)
                      ++..+.|+|. .++..|.+.......  . .+|+.++|.|.+.+..|.  +.|+|+++|+.+
T Consensus       109 ~~~~~~l~V~~~~~~~p~v~~~~~~~--~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~  167 (221)
T 3m8o_H          109 WGQGTLVTVSSASPTSPKVFPLSLCS--T-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGV  167 (221)
T ss_dssp             BBCCEEEEECSCCCBCCEEEEEECCS--C-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTC
T ss_pred             ECCCEEEEEecCCCCCCeEEEecCcc--c-ccCCCEEEEEEEEeeECCCCEEEEEEECCEEC
Confidence            5677899998 455556664211111  1 689999999999887776  599999998654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.47  E-value=4.9e-07  Score=50.80  Aligned_cols=44  Identities=16%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +|.+...+.  ...+.+|+.++|.|.+.+..+.+.++|||+|+.+.
T Consensus         4 ~p~i~~~p~--~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~   47 (170)
T 3ry4_A            4 KAVLKLEPP--WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP   47 (170)
T ss_dssp             BCEEEEESC--CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECT
T ss_pred             CCEEEeCCC--CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcc
Confidence            345544332  23588999999999997654478999999999874

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.47  E-value=7.6e-08  Score=58.22  Aligned_cols=59  Identities=29%  Similarity=0.501  Sum_probs=39.9

Q ss_pred             cCCCEEEEEEc---CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFA---PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~---pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..   .+..|.+..... ....+.+|+.++|.|.+.+..|.+ .|+|+|||+++.
T Consensus       131 ~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~  193 (270)
T 3qib_D          131 FGPGTRLLVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  193 (270)
T ss_dssp             ECCCEEEEEESCSTTCBCCEEEEEEC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             ECCcEEEEEccccccccCCceEEECC-CccccccCCceEEEEEecceeCCCeEEEEEECCEECC
Confidence            45678899987   222344332111 011245699999999998877876 899999999873

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=2e-07  Score=51.61  Aligned_cols=31  Identities=13%  Similarity=0.387  Sum_probs=27.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+.+   .+.++|||||++|.
T Consensus        18 ~~v~eG~~a~f~C~vs~---~p~v~W~knG~~l~   48 (112)
T 2e6q_A           18 VQVYDGEDAVFSLDLST---IIQGTWFLNGEELK   48 (112)
T ss_dssp             EEEETTCEEEEEEEESS---CCCCEEEESSCBCC
T ss_pred             eEEcCCCcEEEEEEECC---CCeEEEEECCEECc
Confidence            67999999999999964   67899999999875

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.46  E-value=8.6e-08  Score=57.44  Aligned_cols=54  Identities=28%  Similarity=0.386  Sum_probs=38.1

Q ss_pred             cCCCEEEEEEcCCC------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCE
Q psy7728           5 YGPRTRLYQFAPPS------SIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~pP~------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~   61 (65)
                      ++..+.|+|...|.      .+.+.. +.  ...+.+|+.++|.|.+.+..|. +.|+|++++.
T Consensus       113 ~~~~~~L~V~~~~~~~~~~p~~~v~~-p~--~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  173 (242)
T 1hxm_B          113 FGPGTKLIITDKQLDADVSPKPTIFL-PS--IAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKS  173 (242)
T ss_dssp             ECCCEEEEEESSCCCSCCSCBCCCCC-CC--GGGGGSSSCEEEEEEEEEESSCCEEEEEEESSS
T ss_pred             EcCcEEEEEcccccCCCcCCCceEEC-CC--hhhcccCCCceEEEEEeeEECCCeEEEEEcCCC
Confidence            46678999997532      223322 11  1135679999999999877785 7999999986

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.46  E-value=2.8e-07  Score=57.53  Aligned_cols=52  Identities=25%  Similarity=0.533  Sum_probs=40.8

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|+|..+|.   +...+. ....+.+|+.++|.|.+. ++|.+.|+|||||+++.
T Consensus       300 ~~~l~V~~~P~---~~~~~~-~~~~~~~g~~~~l~C~~~-g~p~p~v~W~~~g~~~~  351 (395)
T 1bih_A          300 SLKLTVVSAPK---YEQKPE-KVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLS  351 (395)
T ss_dssp             EEEEEEEEEEE---EEECCC-SEEEECTTSCEEEECEEE-EESCCCCEEEETTEECC
T ss_pred             EEEEEEEcCCc---cccCCC-cceEecCCCeEEEEEEEC-cccCCeeEEEECCEECC
Confidence            67899988773   433332 236789999999999996 57999999999999874

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=1.5e-07  Score=50.96  Aligned_cols=34  Identities=15%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. ++|.+.|+|||||+.+.
T Consensus        17 ~~~v~~G~~v~l~C~~~-g~p~p~i~W~k~g~~~~   50 (118)
T 2eo9_A           17 NQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVS   50 (118)
T ss_dssp             CEEEETTCEEEEECBCC-CSSCCEEEEEESSSBCC
T ss_pred             CEEEcCCCeEEEEEEEE-ecCCCEEEEEECCEECc
Confidence            46789999999999994 58999999999997663

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.46  E-value=2.4e-07  Score=58.51  Aligned_cols=53  Identities=19%  Similarity=0.379  Sum_probs=40.2

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...++|+|..+|..   ....  ....+.+|+.++|.|.+. |.|.+.|+|||||+++.
T Consensus       285 ~~~~~l~v~~~P~~---~~~~--~~~~v~~g~~v~l~C~~~-g~P~p~i~W~k~g~~l~  337 (384)
T 3kld_A          285 VAKGQLTFYAQPNW---VQII--NDIHVAMEESVFWECKAN-GRPKPTYRWLKNGDPLL  337 (384)
T ss_dssp             EEEEEEEEEEEEEE---EECC--CCEEECTTCCEEEECEEE-EESCCEEEEEETTEECC
T ss_pred             EEEEEEEEecCCcc---ccCC--CceEecCCCCEEEEeECC-ccCCCeEEEEECCEECC
Confidence            34578889887742   2222  235789999999999995 57999999999999863

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.45  E-value=9.2e-07  Score=50.51  Aligned_cols=34  Identities=29%  Similarity=0.652  Sum_probs=29.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||+|+++.
T Consensus        13 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~   46 (197)
T 2j8h_A           13 NLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEII   46 (197)
T ss_dssp             CEEEETTSCEEEEEEEE-CSSCCEEEEEETTEECC
T ss_pred             ccEEcCCCEEEEEEEEe-ecCCCEEEEEECCEECc
Confidence            46789999999999996 57999999999998763

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.45  E-value=4.9e-07  Score=58.85  Aligned_cols=57  Identities=19%  Similarity=0.452  Sum_probs=39.4

Q ss_pred             cCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      ++..+.|+|...+ ..|.+...+.  ...+.+|+.++|.|.+.+..|+ +.|+|||||+++
T Consensus        99 ~~~~~~l~V~~~~~~~P~~~~~~~--~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  157 (523)
T 2rcj_C           99 FGTGTKVTVLGQPKANPTVTLFPP--SSEELQANKATLVCLISDFYPGAVTVAWKADGSPV  157 (523)
T ss_pred             ccCceEEEeccCCCcCCeEEecCC--cccccCCCceEEEEEeccccCCceEEEEecCCCCC
Confidence            4567899996433 2344443332  1245689999999999876554 499999999876

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.45  E-value=1.1e-07  Score=57.25  Aligned_cols=59  Identities=29%  Similarity=0.473  Sum_probs=40.4

Q ss_pred             cCCCEEEEEEcC---CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAP---PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~p---P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ++..+.|+|...   +..|.+..... ....+.+|+.++|.|.+.+..|+ +.|+|+|||+++.
T Consensus       105 ~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E          105 FGPGTRLTVTEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             ECCCEEEEEESCGGGCBCCEEEEECC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             ECCCEEEEEecccCCCCCCeEEEECC-ChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            456788999852   23445543221 11124478999999999887776 5999999998763

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.45  E-value=1e-07  Score=59.46  Aligned_cols=57  Identities=19%  Similarity=0.306  Sum_probs=41.4

Q ss_pred             ccCCCEEEEEE-cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728           4 RYGPRTRLYQF-APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTE   62 (65)
Q Consensus         4 ~~~~~~~L~V~-~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~   62 (65)
                      .++..+.|+|. .++..|.+......  ..+.+|+.++|.|.+.++.|. +.|+|+|+|+.
T Consensus       104 ~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B          104 YWGQGTLVTVSSASTKGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             EECCCEEEEECSSCCBCCEEEEECCS--CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             eecCcEEEEEecCCCCCCeEEEcccc--ccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            35667899998 45555666533211  135799999999999877675 79999999865

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.45  E-value=9.2e-08  Score=56.92  Aligned_cols=50  Identities=20%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCE
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNT   61 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~   61 (65)
                      ...+.|+|..+|.. .+.  +.   .....|..++|.|.+.++.|.+ .|+|||||+
T Consensus       109 ~~~~~L~V~~~P~v-~~~--~~---~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A          109 QGTVQLEVVASPAS-RLL--LD---QVGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             EEEEEEEEEBCCEE-EEE--CC-----------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             eeEEEEEEecCCce-EEe--cC---CccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence            34678999987753 222  22   1345678888999998878998 999999985

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.44  E-value=2.6e-07  Score=49.73  Aligned_cols=33  Identities=18%  Similarity=0.469  Sum_probs=28.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+  +.|.+.|+|||||+++.
T Consensus        25 ~~~v~~G~~v~L~C~~--~~p~~~v~W~k~g~~l~   57 (104)
T 1pd6_A           25 AYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQ   57 (104)
T ss_dssp             EEEEETTSCEEEEEEC--SSSSSCCEEEESSSEEC
T ss_pred             cEEEecCCCEEEEEEE--cCCCCEEEEEECCEECC
Confidence            3578999999999998  47889999999998764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.44  E-value=6.9e-08  Score=58.87  Aligned_cols=55  Identities=24%  Similarity=0.346  Sum_probs=41.3

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ...+.+.|.++|..+.+.....   +...+|+.++|.|.+.+++|++.|+||++++++
T Consensus       102 ~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~  156 (308)
T 4fom_A          102 QSSTTVTVLVEPTVSLIKGPDS---LIDGGNETVAAICIAATGKPVAHIDWEGDLGEM  156 (308)
T ss_dssp             EEEEEEEEEBCCEEEEEECSSC---CCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBC
T ss_pred             eeeeEEEeeeccccccccccce---eEEcCCceEEEEEEecCCcCCceEEEEECCccc
Confidence            3456788888876655543222   345678999999998888999999999998765

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.44  E-value=1.7e-07  Score=49.12  Aligned_cols=33  Identities=18%  Similarity=0.517  Sum_probs=28.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+  +.|.+.+.|||||+.+.
T Consensus        17 ~~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~   49 (95)
T 2k1m_A           17 SVEVAAGSPAVFEAET--ERAGVKVRWQRGGSDIS   49 (95)
T ss_dssp             CEEEETTSCEEEEEEC--SSSSCCCEEECSSSEEC
T ss_pred             cEEEeCCCcEEEEEEe--CCCCCeEEEEECCEECC
Confidence            4678999999999998  57899999999998763

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.44  E-value=3.4e-07  Score=54.23  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=31.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|..+.|.|.+..+.|.+.|+|||||+++.
T Consensus        12 ~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~   45 (207)
T 3rbs_A           12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF   45 (207)
T ss_dssp             EEECGGGCEEEEEECSCCCSCCEEEEEETTEEEC
T ss_pred             eEEEeCCeEEEEEEEecCCCCCEEEEEECCEECc
Confidence            5789999999999998778999999999999873

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.43  E-value=2.8e-07  Score=61.38  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.|+|+.+|   .+...+....+.+.+|+.+.|.|.+. ++|+|.|+|||||+++.
T Consensus       315 ~~~~L~V~~~p---~i~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~k~g~~l~  368 (527)
T 3qs9_E          315 QSALVTIVEKG---FINATNSSEDYEIDQYEEFCFSVRFK-AYPQIRCTWTFSRKSFP  368 (527)
T ss_dssp             EEEEEEEC--C---EEECCCSCCEECCCTTCCCCEEEEEE-EESCCEEEEEETTEEEE
T ss_pred             ceEEEEEEccC---ccccccCcccEEEcCCCeEEEEEEEE-ecCCCEEEEEECCEECc
Confidence            35778888776   34333333346788999999999995 57999999999999873

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=1.5e-07  Score=49.65  Aligned_cols=33  Identities=21%  Similarity=0.614  Sum_probs=29.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.  .|.+.|+|||||+.+.
T Consensus        20 ~~~v~~G~~v~L~C~~~--~p~~~v~W~k~g~~~~   52 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA--QAQTEVTWYKDGKKLS   52 (102)
T ss_dssp             EEEEETTCCEEECCBCS--CSSSCCEEEETTEECC
T ss_pred             cEEEeCCCcEEEEEEec--CCCCceEEEECCEECC
Confidence            45789999999999985  7899999999998874

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.43  E-value=2e-07  Score=59.09  Aligned_cols=58  Identities=17%  Similarity=0.311  Sum_probs=41.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..+...|.+......  ....+|+.++|.|.+.+++|++ .|+|||||+++.
T Consensus       102 ~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  160 (438)
T 1qgc_4          102 FGAGTKLDLKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  160 (438)
T ss_dssp             BCCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             ccCceeEEecCCCCCCEEEecCCC--hhhccCCceEEEEEEccccCCCcEEEEEECCEEcC
Confidence            356789999765445555432211  1234688999999998878887 999999998764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=2.7e-08  Score=52.27  Aligned_cols=32  Identities=28%  Similarity=0.613  Sum_probs=27.8

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|.|.+. +.|.+.|.|||+++.+.
T Consensus        21 ~v~~G~~v~l~C~~~-g~p~~~v~W~k~~~~~~   52 (96)
T 2ens_A           21 AVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLP   52 (96)
T ss_dssp             EECTTCEEEEECCCS-SCSSCCCCCEESSSBCS
T ss_pred             EEcCCCeEEEEEEEc-cCCCCEEEEEECCEECc
Confidence            689999999999985 57889999999997753

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.42  E-value=2.3e-07  Score=55.81  Aligned_cols=53  Identities=17%  Similarity=0.372  Sum_probs=37.8

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|.|..+|...   .........+.+|+.++|.|.+. ++|.+.|+||+||+.+.
T Consensus       184 ~~~~~v~~~p~~~---~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~v~W~~~g~~~~  236 (291)
T 2wim_A          184 DIIVIVNVPPAIS---MPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIE  236 (291)
T ss_dssp             EEEEEEEBCCCCB---CSCSEEECCSSSCCEEEEECBCC-CBSCCEEEEEETTEECC
T ss_pred             eEEEEeccCCccc---cCcccccceecCCCeEEEEEEee-cCCCCeEEEEECCEECc
Confidence            3567777777532   11111123578899999999995 57999999999999864

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.42  E-value=8e-08  Score=58.63  Aligned_cols=59  Identities=29%  Similarity=0.470  Sum_probs=40.3

Q ss_pred             cCCCEEEEEEcCC---CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPP---SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP---~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ++..+.|+|..++   ..|.+..... ....+.+|+.++|.|.+.+..|+ +.|+|||||+++.
T Consensus       132 ~~~~~~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~  194 (279)
T 2wbj_D          132 FGPGTRLTVTEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  194 (279)
T ss_dssp             ECCCEEEEEESCGGGCBCCEEEEEEC-CHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECC
T ss_pred             eCCCEEEEEecCCCCCCCCEEEEECC-CcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            4567899998732   3344433211 01124478999999999877675 7999999998863

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.42  E-value=2.5e-07  Score=57.78  Aligned_cols=49  Identities=20%  Similarity=0.403  Sum_probs=35.7

Q ss_pred             EEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          11 LYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        11 L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |.|..||   .+...  +..+.+.+|+.++|.|.+.+++|.+.++|||||+.+.
T Consensus         1 l~v~~~P---~~~~~--p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~   49 (395)
T 1bih_A            1 LPVDKYP---VLKDQ--PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYN   49 (395)
T ss_dssp             ----CCC---EECCC--CSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCC
T ss_pred             CCcCCCC---EeecC--CCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcc
Confidence            4566665   44332  3457889999999999998778999999999998763

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.42  E-value=1.8e-07  Score=57.21  Aligned_cols=57  Identities=21%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+|+.++|.|.+.+..|.+ .|+|+|+++.+
T Consensus       114 ~~~~~~L~V~~~~~~~P~v~~~~p~--~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G          114 WGQGTTLTVSSAKTTAPSVYPLAPV--CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECCC--CC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             ECCCEEEEEccCCCCCCeEEEeCCC--ccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence            45678999986 3344555432211  1356899999999998777876 99999998753

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.42  E-value=5.5e-07  Score=52.91  Aligned_cols=56  Identities=9%  Similarity=0.185  Sum_probs=38.7

Q ss_pred             CCCEEEEEEcCCC-ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE----CCEEc
Q psy7728           6 GPRTRLYQFAPPS-SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR----GNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~-~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~----~~~~l   63 (65)
                      ...+.|.|...+. .+.+... ......+.+|+.++|.|.+.+ +|.+.++||+    +|..+
T Consensus        99 ~~~~~l~V~~~~~~~~~~~~~-~~~~~~~~~g~~v~L~C~~~~-~p~p~v~W~~~~~~~g~~~  159 (241)
T 3grw_A           99 RQTYTLDVLERSPHRPILQAG-LPANQTAVLGSDVEFHCKVYS-DAQPHIQWLKHVEVNGSKV  159 (241)
T ss_dssp             EEEEEEEEECCCCCCCEEEEC-TTCSEECCTTCCEEEEEEEEC-SSCCEEEEEEECCSSSCSS
T ss_pred             EEEEEEEEeccCCCCceeecC-CCccceecCCCEEEEEEEEec-CCCCEEEEEEcccCCCccc
Confidence            3457788887433 3333322 223457889999999999954 7889999999    66544

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.41  E-value=5.4e-07  Score=51.23  Aligned_cols=51  Identities=24%  Similarity=0.483  Sum_probs=38.7

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|.|.++|.   +...+  ....+.+|+.++|.|.+. +.|.+.++||+++..+.
T Consensus        92 ~~~l~v~~~p~---~~~~~--~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~  142 (192)
T 2iep_A           92 CGALQVKMKPK---ITRPP--INVKIIEGLKAVLPCTTM-GNPKPSVSWIKGDSALR  142 (192)
T ss_dssp             EEEEEEEEEEE---EEECC--CCEEEETTSCEEECCEEE-EESCCEEEEEETTEECC
T ss_pred             EEEEEEEeCCc---cccCC--cceEEeCCCcEEEEEEEe-ccCCceEEEEeCCEEcc
Confidence            46788887764   33222  235788999999999985 47889999999998764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.41  E-value=5.5e-07  Score=59.68  Aligned_cols=54  Identities=24%  Similarity=0.514  Sum_probs=41.0

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|.   +...+  ..+.+.+|+.++|.|.+. |.|++.|+|||||+++.
T Consensus       373 ~~~~~~l~V~~~P~---~~~~~--~~~~~~~G~~v~l~C~~~-g~P~p~v~W~k~g~~l~  426 (570)
T 3b43_A          373 ASSSTSLKVKEPPV---FRKKP--HPVETLKGADVHLECELQ-GTPPFQVSWHKDKRELR  426 (570)
T ss_dssp             CEEEEEECEECCCE---ECSCC--CCEEECTTCCEEEEEEEE-SSSSCCCEEEETTEECC
T ss_pred             EEEEEEEEecCCCe---eecCC--CceeecCCCEEEEEEEEe-cCCCCEEEEEECCEECc
Confidence            34457899998873   33222  235778999999999996 57999999999998863

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.41  E-value=1.3e-06  Score=50.84  Aligned_cols=42  Identities=21%  Similarity=0.524  Sum_probs=32.7

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |.+...+.  .+.+.+|+.++|.|.+. +.|.+.|+|||+|+.+.
T Consensus         7 P~~~~~p~--~~~v~~G~~v~l~C~~~-g~p~~~v~W~~~~~~~~   48 (212)
T 2yd1_A            7 PEIIRKPQ--NQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVS   48 (212)
T ss_dssp             CEEEECCC--CEEEETTSCEEEEEEEE-CSSCCEEEEEETTEECC
T ss_pred             CEEEcCCC--ceEEecCCEEEEEEEEc-cCCCCeEEEEECCEECC
Confidence            34443332  35789999999999996 47889999999998874

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.41  E-value=1.4e-06  Score=50.15  Aligned_cols=46  Identities=26%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..++|+|+.++..|.+.....          ..+|+|.+.+ .|.+.|+|||||+.+
T Consensus        86 ~~~~L~V~~~~~~p~i~~~~~----------~~~L~C~~~~-~p~p~i~W~~~~~~l  131 (171)
T 1ccz_A           86 MKFFLYVLEMVSKPMIYWECS----------NATLTCEVLE-GTDVELKLYQGKEHL  131 (171)
T ss_dssp             EEEEEEEECCCCCCEEEEETT----------TTEEEEECSS-CSSCEEEEEETTEEE
T ss_pred             EEEEEEEECcCCCCEEEEecC----------CcEEEEEeCC-CCCcEEEEEECCEEC
Confidence            457899999888887754222          1289999976 488999999999876

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.40  E-value=6.1e-07  Score=50.78  Aligned_cols=29  Identities=21%  Similarity=0.405  Sum_probs=25.3

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+..+.|.|.+ .|+|.|.|+|||||++|.
T Consensus        14 ~~~~~~l~c~v-~G~P~P~I~W~knG~~l~   42 (126)
T 1he7_A           14 EMHHWCIPFSV-DGQPAPSLRWLFNGSVLN   42 (126)
T ss_dssp             CCCEEEEEEEE-CCSSCCEEEEEETTEECC
T ss_pred             cCccEEEEEEE-eeeCCCeEEEEECCEECC
Confidence            56678999998 568999999999999885

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=1.6e-07  Score=49.99  Aligned_cols=33  Identities=15%  Similarity=0.496  Sum_probs=28.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||+|+.+
T Consensus        18 ~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~g~~~   50 (110)
T 2dm3_A           18 DLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPV   50 (110)
T ss_dssp             EEEEESSSCBCCEEEEE-CSSCCEEECBBSSSBC
T ss_pred             cEEEeCCCEEEEEEEEE-EcCCCEEEEEECCEEC
Confidence            46789999999999996 5799999999998765

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.39  E-value=1.2e-07  Score=58.63  Aligned_cols=59  Identities=12%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             CCCEEEEEEcCCC---ccEEEeCCCCCeEEeecCCcEEEEEEecC---CCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPS---SIEIVGHPSNSKIEIRENQEITLECLVKN---AKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~---~~~i~~~~~~~~~~~~~G~~~~L~C~~~~---~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..++.   .|.+........+.+.+|+.++|.|.+.+   +.|.+.|+||+||+.+.
T Consensus       208 ~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~  272 (349)
T 4dep_C          208 TRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPD  272 (349)
T ss_dssp             EEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC---
T ss_pred             EEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEcc
Confidence            3455677776432   34554332212226789999999999975   47999999999998753

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.39  E-value=4.9e-07  Score=56.39  Aligned_cols=54  Identities=19%  Similarity=0.361  Sum_probs=40.5

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|.   +....  ....+.+|+.++|.|.+. +.|.+.|+|||||+.+.
T Consensus       283 ~~~~~~l~V~~~p~---~~~~~--~~~~~~~g~~~~l~C~~~-g~p~p~v~W~~~g~~~~  336 (382)
T 1cs6_A          283 DTYQGRIIIHAQPD---WLDVI--TDTEADIGSDLRWSCVAS-GKPRPAVRWLRDGQPLA  336 (382)
T ss_dssp             EEEEEEEEEEEEEE---EEECC--CCEEEETTCCEEEECEEE-EESCCEEEEEETTEECC
T ss_pred             EEEEEEEEEecCCC---cccCC--CccEEcCCCeEEEEEEee-eecCCEEEEEECCEECC
Confidence            34457888888764   32222  235789999999999995 57999999999999864

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.39  E-value=1.5e-07  Score=56.64  Aligned_cols=59  Identities=24%  Similarity=0.429  Sum_probs=39.3

Q ss_pred             cCCCEEEEEEcC---CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAP---PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~p---P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ++..+.|+|...   +..|.+..... ....+.+|+.++|.|.+.+..|++ .|+|+|||+++.
T Consensus       106 ~~~~t~l~V~~~~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~  168 (253)
T 3to4_D          106 FGEGSKLTVLEDLKNVFPPEVAVFEP-SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  168 (253)
T ss_dssp             ECCCEEEEEESCSTTCBCCEEEEEEC-CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             ECCCEEEEEecCCCCCCCCeEEEeCC-ChhhcccCCceEEEEEEceEECCcEEEEEEECCEECC
Confidence            456678999852   23344432111 011233578999999998878877 899999999864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.39  E-value=1.9e-07  Score=48.89  Aligned_cols=32  Identities=19%  Similarity=0.527  Sum_probs=27.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+.+ .| +.|+|||+|+.+
T Consensus        18 ~~~v~~G~~v~l~C~~~g-~p-p~i~W~k~g~~~   49 (95)
T 2ckn_A           18 SLLVHPGDLLQLRCRLRD-DV-QSINWLRDGVQL   49 (95)
T ss_dssp             CEEECTTSCEEEECCEES-SC-CEEEEEBTTBCC
T ss_pred             eEEEcCCCeEEEEEECCC-CC-CceEEEECCEec
Confidence            467899999999999976 46 699999999876

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.39  E-value=3.4e-08  Score=58.14  Aligned_cols=58  Identities=22%  Similarity=0.461  Sum_probs=36.6

Q ss_pred             cCCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ++..+.|+|...| ..|.+......  ....+|+.++|.|.+.++.|+ +.|+|||||+++.
T Consensus       120 ~~~~~~l~V~~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  179 (234)
T 2j6e_L          120 FGGGTKLTVLGQPKAAPSVTLFPPS--SEELQANKATLVCLISDFFPGAVTVAWKADGAPVK  179 (234)
T ss_dssp             ECCCBCCCBCCCCCCCCCCCEECCC--HHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred             ecCCEEEEEecCCCCCCcccccCCC--hhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence            3456777775432 22222221110  123468899999999877666 5999999999863

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.39  E-value=7.9e-08  Score=58.92  Aligned_cols=50  Identities=24%  Similarity=0.354  Sum_probs=35.2

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      +.|+|.++|.. .+.....   ..+.+|+.++|.|.+.+ +|.| .|+|||+|+++
T Consensus       209 ~~l~V~~~P~v-~~~~~~~---~~~~~g~~v~l~C~~~g-~P~p~~v~W~~~~~~l  259 (313)
T 4fqp_A          209 VNLTVYYPPEV-SISGYDN---NWYLGQNEATLTCDARS-NPEPTGYNWSTTMGPL  259 (313)
T ss_dssp             EECCBCEEEEE-EEECCCS---CEETTCCCEEEEEEEEE-ESCCCEEEEEETTBSC
T ss_pred             eecccccCCcc-ccccccc---eeecCCCeEEEEEEecC-CCCCcEEEEEECCEEC
Confidence            55667677642 2332222   35678999999999964 7877 79999999765

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.39  E-value=5.4e-07  Score=56.25  Aligned_cols=54  Identities=24%  Similarity=0.321  Sum_probs=41.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.|+|..+|.   +..  ......+.+|+.++|.|.+. ++|.+.|+|+|+|+.+.
T Consensus        89 ~~~~~~l~V~~~P~---~~~--~~~~~~~~~g~~~~l~C~~~-g~p~~~i~W~~~g~~l~  142 (389)
T 2jll_A           89 HQKSMYLDIEYAPK---FIS--NQTIYYSWEGNPINISCDVK-SNPPASIHWRRDKLVLP  142 (389)
T ss_dssp             EEEEEEEEEEEEEE---ECC--SCCEEEECTTCCEEEEECEE-EESCCEEEEEETTEESS
T ss_pred             cceEEEEEEEeCCE---Eec--CcceEEeccCCEEEEEEEEE-ecCCCeEEEEECCccCC
Confidence            34568899998773   332  22234678999999999986 57999999999998864

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=9.6e-08  Score=51.31  Aligned_cols=34  Identities=18%  Similarity=0.549  Sum_probs=27.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+.+..+++.+.|||||+++
T Consensus        17 ~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i   50 (104)
T 2eny_A           17 TMEVLEGESCSFECVLSHESASDPAMWTVGGKTV   50 (104)
T ss_dssp             CEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBC
T ss_pred             CcEEcCCCcEEEEEEEcCCCCCceeEEEECCEEC
Confidence            4688999999999999664335689999999876

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.38  E-value=2.1e-06  Score=52.65  Aligned_cols=55  Identities=7%  Similarity=0.135  Sum_probs=42.4

Q ss_pred             ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+..+.|.|...+..|.+...+..   .+.+|+.++|.|.+.  .|++.+.|||+|..+
T Consensus       104 ~~s~~~~l~V~~~~~~p~~~~~~~~---~v~~G~~v~L~C~~~--~~~~~~~w~k~g~~~  158 (316)
T 3vh8_G          104 APSNPVVIMVTGNHRKPSLLAHPGP---LVKSGERVILQCWSD--IMFEHFFLHKEGISK  158 (316)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEESCS---EEETTCCEEEEEEES--SCCSEEEEEETTCCS
T ss_pred             cCCCcEEEEEecCCCCCeEEecCCC---ccCCCCeEEEEEcCC--CCCcEEEEEECCCcc
Confidence            3456789999887777777654432   378999999999983  467799999998754

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.38  E-value=3.8e-07  Score=52.29  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=30.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+..+.|.+.|+|||||+.+.
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~   45 (195)
T 2c5d_C           11 NITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILE   45 (195)
T ss_dssp             CEEECTTCCEEEEEEEEEESSCCCCEEEETTEECC
T ss_pred             heEEecCCcEEEecccccCCCCcEEEEEECCEEcc
Confidence            35789999999999997468999999999998864

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.38  E-value=8.1e-07  Score=54.54  Aligned_cols=54  Identities=11%  Similarity=0.170  Sum_probs=41.9

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+..+.|.|...+..|.+...+..   .+.+|+.++|.|.+.  .|.+.+.|||+|..+
T Consensus       205 ~s~~~~l~V~~~~~~p~i~~~~~~---~v~~G~~v~L~C~~~--~~~~~~~W~k~g~~~  258 (316)
T 3vh8_G          205 PSDPLDIVVTGPYEKPSLSAQPGP---KVQAGESVTLSCSSR--SSYDMYHLSREGGAH  258 (316)
T ss_dssp             CCCCEEEEEECSSCCCEEEEESCS---CCCTTSCCEEEEEES--SCCSEEEEEETTSSC
T ss_pred             CCCCEEEEecCCCCCCeEEeCCCC---eecCCCcEEEEEECC--CCCcEEEEEECCCcC
Confidence            366788999877667777654432   578999999999995  478999999998653

>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} SCOP: b.1.1.0 PDB: 3p77_B* 4g43_B 4g42_B 4e0r_B 3bev_B 3bew_B 3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*

Probab=98.38  E-value=6.7e-07  Score=48.30  Aligned_cols=31  Identities=13%  Similarity=0.350  Sum_probs=26.7

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..|..++|+|.+.+..|+ ..|+|+|||+++.
T Consensus        16 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~   47 (99)
T 3p73_B           16 SAGTKNVLNCFAAGFHPPKISITLMKDGVPME   47 (99)
T ss_dssp             CTTSCEEEEEEEEEESSSCCEEEEEETTEECT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCeeCC
Confidence            457789999999998887 5899999999874

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.38  E-value=3.2e-07  Score=48.36  Aligned_cols=32  Identities=13%  Similarity=0.523  Sum_probs=27.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.  .|.+.|+|||||+.+.
T Consensus        18 ~~v~~G~~v~l~C~~~--~p~~~v~W~k~g~~i~   49 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA--DPKLEVKWYKNGQEIR   49 (100)
T ss_dssp             EEECTTEEEEEEEEES--CTTSCEEEEESSCBCC
T ss_pred             cEEcCCCcEEEEEEec--CCCceEEEEECCEECC
Confidence            4678999999999996  5999999999998763

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.37  E-value=1.8e-06  Score=52.52  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=34.3

Q ss_pred             CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        18 ~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..|.+.. +....+.+.+|+.++|.|.+. ++|.+.|+||+||+.+.
T Consensus       207 ~~P~~~~-~~~~~~~~~~g~~v~l~C~~~-g~P~p~i~W~~~g~~i~  251 (315)
T 1itb_B          207 TRPVIVS-PANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVID  251 (315)
T ss_dssp             CCCEECS-CCSEEEECCSSSCEEEEEEEE-ECTTSEEEEEETTEECC
T ss_pred             CCCEEec-CCCCcEEEeCCCcEEEEEEEe-cCCCCeeEEEECCEECC
Confidence            4455543 222345789999999999996 48999999999998764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.37  E-value=6.4e-07  Score=52.02  Aligned_cols=57  Identities=11%  Similarity=0.180  Sum_probs=39.9

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE----CCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR----GNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~----~~~~l   63 (65)
                      ...+.|.|..++..+............+.+|+.++|.|.+.+ +|.+.++||+    +|..+
T Consensus       103 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~g~~~  163 (231)
T 3ojm_B          103 NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGSKY  163 (231)
T ss_dssp             EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEEC-SSCCEEEEEEECCBTTBSB
T ss_pred             cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEec-CCCCEEEEEECCCCCCccc
Confidence            345778888765533233222234567899999999999865 7889999999    66543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.37  E-value=1.5e-06  Score=52.39  Aligned_cols=51  Identities=16%  Similarity=0.346  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcC-CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728           6 GPRTRLYQFAP-PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus         6 ~~~~~L~V~~p-P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +..+.|.|..+ |-.+.+....    ..+.+|+.++|.|.+.+ +|.+.|+||++++
T Consensus       169 s~~~~l~v~~~~~p~i~~~~~~----~~v~~G~~v~L~C~~~g-~p~p~v~W~~~~~  220 (289)
T 3mjg_X          169 SDAYYVYRLQVSSINVSVNAVQ----TVVRQGENITLMCIVIG-NEVVNFEWTYPRK  220 (289)
T ss_dssp             CCCEEEEECCCCCCCCEEEESC----SEEETTSCEEEEEEEES-CSSBEEEEECTTS
T ss_pred             eeeEEEEecCCCCCCcEEeCCc----ceeEcCCCEEEEEEECC-CCCcceEEEcCCc
Confidence            44567777762 2223333222    26899999999999966 8999999998765

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.37  E-value=7.2e-07  Score=54.59  Aligned_cols=52  Identities=15%  Similarity=0.288  Sum_probs=38.5

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecC---CcEEEEEEecCCCCCceEEEEEC
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIREN---QEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G---~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ....+.|+|..+|.......   ...+.+.+|   +.++|.|.+..++|.+.|+|||+
T Consensus       119 ~~~~~~l~V~~~p~~~~~~~---~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A          119 RESQLNLTVMAKPTNWIEGT---QAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             EEEEEEEEEEBCCEEEEEEC---SSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             cEEEEEEEEecCCcceeecC---CCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            44568899999886432222   234678888   77999998567789999999995

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.36  E-value=8e-08  Score=58.90  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+|+.++|.|.+.+..|.+ .|+|+|+++.
T Consensus       118 ~~~~t~L~V~~~~~~~P~v~~~~p~--~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~  175 (257)
T 3bn9_D          118 WGQGTMVTVSSASTKGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  175 (257)
T ss_dssp             ECCCEEEEECSSCCBCCEECCCCC-------------CCCEEEEEBSSCCEEEETTTTCC
T ss_pred             eCCcEEEEecCCCCcCCcEEEecCc--ccccCCCcEEEEEEEeeEECCCcEEEEeeCCCc
Confidence            45678999987 4455666433221  1357899999999998877877 9999999875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.36  E-value=1.1e-06  Score=50.56  Aligned_cols=35  Identities=23%  Similarity=0.599  Sum_probs=30.4

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ....+.+|+.++|.|.+. ++|.+.+.|||+|+++.
T Consensus       125 ~~~~v~~g~~~~l~C~~~-g~p~p~v~W~~~~~~~~  159 (212)
T 2r15_A          125 DVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALA  159 (212)
T ss_dssp             SEEEEETTCCEEEEEEEE-CSSCCEEEEEETTEEEC
T ss_pred             CcEEEccCCeEEEEEEEc-CCCCceEEEEECCeECc
Confidence            356789999999999996 58999999999998864

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=5.3e-07  Score=47.65  Aligned_cols=32  Identities=13%  Similarity=0.506  Sum_probs=27.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.+ .|.+ |.|||+|+.+.
T Consensus        20 ~~v~~G~~v~l~C~~~~-~p~~-v~W~k~g~~~~   51 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSR-VDFP-ATWYKDGQKVE   51 (104)
T ss_dssp             EEEESSSCEECCEECSS-TTCC-CEEEETTEECC
T ss_pred             EEEeCCCcEEEEEEecC-CCCc-cEEeeCCEECC
Confidence            57899999999999854 5777 99999998864

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.35  E-value=2.2e-06  Score=48.61  Aligned_cols=47  Identities=21%  Similarity=0.403  Sum_probs=36.1

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEE
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYR   58 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~   58 (65)
                      ...+.|+|.++|...   ..+  ....+.+|+.++|.|.+. ++| ++.|+|||
T Consensus        73 ~~~~~l~V~~~P~~~---~~~--~~~~~~~g~~~~l~C~~~-g~p~~~~i~W~~  120 (184)
T 3b5h_A           73 MGTANIQLHGPPRVK---AVK--SSEHINEGETAMLVCKSE-SVPPVTDWAWYK  120 (184)
T ss_dssp             SCEEEEEECCSCCCE---ESC--SEEEECTTSCEEEEEECC-CSSCCCEEEEEE
T ss_pred             CcEEEEEEecCCcee---ecC--CCcEEcCCCcEEEEEEEC-CCCCCCeEEEEE
Confidence            356789999888642   222  235789999999999996 467 89999999

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.35  E-value=1e-06  Score=53.36  Aligned_cols=34  Identities=32%  Similarity=0.676  Sum_probs=30.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.+..|.+.|+|||+|+.+.
T Consensus        16 ~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~   49 (317)
T 2y25_A           16 WEVTGECNVLLKCKVANIKKETHIVWYKDEREIS   49 (317)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC
T ss_pred             EEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcC
Confidence            5789999999999998777899999999998764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.35  E-value=1.5e-06  Score=51.57  Aligned_cols=54  Identities=13%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             cCCCEEEEEEcCCC------------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE--CCE
Q psy7728           5 YGPRTRLYQFAPPS------------SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR--GNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~pP~------------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~--~~~   61 (65)
                      ++..+.|+|..+|.            .+.+...  +..+.+.+|+.++|.|.+.+ .|++.|+|||  +|+
T Consensus       109 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~g~  176 (247)
T 2ghw_B          109 WGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQS--PATLSLSPGERATLSCRASQ-SVRSNLAWYQQKPGQ  176 (247)
T ss_dssp             ECCCEEEEECSCC------------CCCCEEEE--CSEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTS
T ss_pred             cCCceEEEEecccccccccccCCCCcceEEEcc--CCEEEecCCCcEEEEEEeCC-CccceEEEEEECCCC
Confidence            45677899987642            2223221  23457899999999999965 5777999999  554

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.34  E-value=4.7e-07  Score=47.77  Aligned_cols=32  Identities=31%  Similarity=0.632  Sum_probs=27.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+.+ .|.+ |+|||+++.+
T Consensus        17 ~~~v~~G~~v~l~C~~~~-~p~~-v~W~k~~~~l   48 (103)
T 2e7b_A           17 DLEVLEGGAATLRCVLSS-VAAP-VKWCYGNNVL   48 (103)
T ss_dssp             CEEEESSSCEEEEEECSS-CCCS-CEEEESSSBC
T ss_pred             cEEEECCCcEEEEEEEeC-CCCC-eEEEECCEEC
Confidence            367899999999999854 6777 9999998765

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.33  E-value=1e-06  Score=47.15  Aligned_cols=30  Identities=20%  Similarity=0.433  Sum_probs=25.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCC---ceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPA---AKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~---~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.+. +.|.   +.|+|||++
T Consensus        13 ~~~v~~G~~v~L~C~~~-g~p~~~~p~v~W~k~~   45 (108)
T 3cx2_A           13 DGEVTVGGSITFSARVA-GASLLKPPVVKWFKGK   45 (108)
T ss_dssp             CEEEETTCCEEEEEEEE-CC-CCSCCEEEEEETT
T ss_pred             cEEEeCCCCEEEEEEEC-CCccCCCcEEEEccCC
Confidence            46789999999999996 4677   999999986

>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...

Probab=98.33  E-value=6.5e-07  Score=48.39  Aligned_cols=32  Identities=13%  Similarity=0.346  Sum_probs=27.3

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ...|+.++|.|.+.+.+|+. .|+|+|||+++.
T Consensus        16 ~~~~~~~~L~C~~~gFyP~~i~v~W~k~g~~~~   48 (100)
T 1k5n_B           16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE   48 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT
T ss_pred             ccCCCcEEEEEEEEeeECCceEEEEEECCEECC
Confidence            34567899999999988875 899999999874

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.33  E-value=1.4e-06  Score=57.70  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=40.5

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|......|.+...+.  .+.+.+|+.++|.|.+.+ .|++.|+|+|||+++.
T Consensus       184 ~~~~~l~v~~~~~pp~~~~~p~--~~~v~~G~~~~l~C~~~g-~p~p~i~W~k~g~~i~  239 (570)
T 3b43_A          184 SSSAKLTLSEHEVPPFFDLKPV--SVDLALGESGTFKCHVTG-TAPIKITWAKDNREIR  239 (570)
T ss_dssp             EEEEEEEEECCCCCCEEEECCC--CBCCBSBSCEEEEEEEES-SSCCEEEEEETTEECC
T ss_pred             EEEEEEEEcCCCCCCccccCCc--eeEecCCCeEEEEEEEEE-CCCCEEEEEECCEECc
Confidence            3456778876444445543332  245789999999999965 6889999999998763

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.32  E-value=4.5e-07  Score=54.69  Aligned_cols=55  Identities=24%  Similarity=0.373  Sum_probs=38.1

Q ss_pred             cCCCEEEEEE-cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCE
Q psy7728           5 YGPRTRLYQF-APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNT   61 (65)
Q Consensus         5 ~~~~~~L~V~-~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~   61 (65)
                      ++..+.|+|. ..+..|.+.....  ...+.+|+.++|.|.+.+..|.+ .++|+++|+
T Consensus       109 ~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H          109 WGQGTLVTVSAAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECC--------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ECCCEEEEEeccCCCCCeEEEecC--CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            4667899998 5556666653222  12456799999999998877876 899999986

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.32  E-value=1.6e-06  Score=50.98  Aligned_cols=43  Identities=16%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +|.|...+.  ...+.+|+.++|.|.+.+ .|.+ .|+|||||+.+.
T Consensus         7 ~p~i~~~p~--~~~v~~G~~v~L~C~~~~-~p~~~~v~W~k~g~~l~   50 (204)
T 3sgj_C            7 KAVVFLEPQ--WYRVLEKDSVTLKCQGAY-SPEDQSTQWFHNESLIS   50 (204)
T ss_dssp             BCEEEEESC--CSEEETTCCEEEEEECCS-SSSCCCEEEEETTEEES
T ss_pred             CCeEEEcCC--CeEEECCCCEEEEEcCCC-CCCCcEEEEEECCEEcc
Confidence            345544332  136899999999999966 4554 599999998864

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.32  E-value=1.7e-06  Score=50.19  Aligned_cols=42  Identities=29%  Similarity=0.720  Sum_probs=32.9

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |.+...+  ..+.+.+|+.++|.|.+.+ +|.+.|+|||+|+.+.
T Consensus        10 P~i~~~p--~~~~v~~G~~v~L~C~~~g-~p~~~v~W~~~g~~~~   51 (217)
T 2vr9_A           10 PRIIEHP--TDLVVKKNEPATLNCKVEG-KPEPTIEWFKDGEPVS   51 (217)
T ss_dssp             CEEEECC--CCEEECTTSCEEECCEEEC-SSCCEEEEEETTEECC
T ss_pred             CEEecCC--CceEEeCCCcEEEEEEcCC-CCCCeEEEEECCcCcc
Confidence            3454433  2467899999999999964 7899999999998864

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.32  E-value=7.6e-07  Score=57.72  Aligned_cols=49  Identities=10%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.|+|..+|..+       .....+.+|+.++|.|.+.+.+|.+.|+|+|+|+.+
T Consensus       221 ~~~l~V~~~p~~~-------~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l  269 (423)
T 3qs7_E          221 LFTIDLNQTPQTT-------LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL  269 (423)
T ss_dssp             CEEEESSSCCCSS-------TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBC
T ss_pred             eEEEEEecCCccC-------CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEc
Confidence            4667777666532       124578999999999999876888999999998764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.32  E-value=2.7e-06  Score=51.49  Aligned_cols=34  Identities=29%  Similarity=0.652  Sum_probs=29.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. ++|.+.|+|||+|+.+.
T Consensus        13 ~~~v~~G~~v~l~C~~~-g~p~~~v~W~~~~~~~~   46 (305)
T 2nzi_A           13 NLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEII   46 (305)
T ss_dssp             CEEECTTCCEEEEEEEE-CSSCCEEEEEETTEECC
T ss_pred             ceEEeCCCcEEEEEEEe-CCCCCeEEEEECCEEcc
Confidence            46789999999999995 57999999999998763

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=2.4e-07  Score=48.96  Aligned_cols=31  Identities=10%  Similarity=0.442  Sum_probs=27.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+.+|+.++|.|.+.+  |.+.|.|||||+.+
T Consensus        18 ~~v~~G~~v~l~C~~~~--~~~~v~W~k~g~~~   48 (103)
T 2edf_A           18 QWVAPGEDVELRCELSR--AGTPVHWLKDRKAI   48 (103)
T ss_dssp             EEECTTSCEEECCEESS--SSCCCCEEESSCBC
T ss_pred             cEEcCCCCEEEEEEEeC--CCCcEEEEECCEEc
Confidence            57899999999999964  78899999999876

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.31  E-value=1.6e-06  Score=56.91  Aligned_cols=54  Identities=4%  Similarity=0.103  Sum_probs=39.9

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecC---CCCCceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKN---AKPAAKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~---~~P~~~i~W~~~~~~l   63 (65)
                      ....+.|+|..+|....  .   +....+.+|+.++|+|.+.+   +.|.+.|+|||||+.+
T Consensus       431 ~~~~~~l~V~~~~p~~~--~---~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~  487 (585)
T 2ocw_A          431 WRTTVEIKIIEGEPNLK--V---PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQA  487 (585)
T ss_pred             cceeEEEEEecCccccc--c---CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCcee
Confidence            34567888887543322  1   23457899999999999963   5789999999999765

>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...

Probab=98.31  E-value=7.4e-07  Score=48.09  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=27.1

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ...|+.++|.|.+.+..|+. .|+|+|||+++.
T Consensus        15 ~~~~~~~~L~C~~~gfyP~~i~v~W~k~g~~~~   47 (99)
T 1lk2_B           15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP   47 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT
T ss_pred             ccCCCCEEEEEEEEEEECCCcEEEEEECCEECC
Confidence            34577899999999988864 899999999875

>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0

Probab=98.31  E-value=1.4e-06  Score=46.89  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=27.0

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..|..++|.|.+.+..|+. .|+|+|||+++.
T Consensus        16 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~   47 (97)
T 3gbl_A           16 EYGKENTLICYVSGFHPPDISIELLKNGEVIA   47 (97)
T ss_dssp             CTTCCEEEEEEEECCBSSCEEEEEEETTEECT
T ss_pred             cCCCcEEEEEEEcceeCCccEEEEEECCccCc
Confidence            3578899999999998876 899999999874

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.31  E-value=2.1e-06  Score=53.66  Aligned_cols=59  Identities=20%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             cCCCEEEEEEcCCCccEE-EeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEI-VGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i-~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+..+.|.|..+|..+.. ..........+.+|+.++|.|.+. ++|++.++|||++..+.
T Consensus       204 ~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~  263 (403)
T 3laf_A          204 TGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVS-GYPPPSFTWLRGEEVIQ  263 (403)
T ss_dssp             BCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEE-EESCCEEEEEETTEECC
T ss_pred             eccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcC-CCCCCeEEEEECCeecc
Confidence            445789999988765321 111122345788999999999996 47889999999998763

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.31  E-value=1.5e-06  Score=52.11  Aligned_cols=54  Identities=22%  Similarity=0.409  Sum_probs=38.5

Q ss_pred             ccCCCEEEEEEcCCCc--------------cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728           4 RYGPRTRLYQFAPPSS--------------IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~~--------------~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .++..+.|.|..++..              +.+..  .+..+.+.+|+.++|.|.+.+..|.+.+.|||+
T Consensus       107 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~--~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  174 (259)
T 3omz_A          107 LFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQ--AQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKR  174 (259)
T ss_dssp             EECCCEEEEEEC------------------CEEEC--CCCCEEEETTCCEEECCEEECCCSSCEEEEEEE
T ss_pred             EECCCCEEEEecCCCCccccccccccccCCeeeEE--eCCEEEEcCCCCEEEEEECCCccCCceEEEeee
Confidence            4667789999975422              23332  233468899999999999877668999999995

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.30  E-value=1.2e-07  Score=58.12  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=39.1

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce-EEEEECCEEc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK-IVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~l   63 (65)
                      ....+.|+|.++|.. .+....   ...+.+|+.++|.|.+. ++|.+. |+||+++..+
T Consensus       220 ~~~~~~l~V~~~P~~-~~~~~~---~~~~~~g~~~~l~C~~~-g~p~p~~i~W~~~~~~~  274 (331)
T 3u83_A          220 FKESLTLNVQYEPEV-TIEGFD---GNWYLQRMDVKLTCKAD-ANPPATEYHWTTLNGSL  274 (331)
T ss_dssp             EEEEEECCEEEEEEE-EEECCC---SCCBTTCCCEEEEEEEE-EESCCCEEEEEETTBSC
T ss_pred             ceeeEEEEEecCCeE-EEecCC---CceEeCCCeEEEEEeCc-CCCCCCEEEEEECCCcc
Confidence            445678888888742 232222   12578999999999995 468887 9999998765

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.30  E-value=6.6e-07  Score=56.70  Aligned_cols=57  Identities=21%  Similarity=0.324  Sum_probs=40.7

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      ++..+.|.|.. ++..|.+......  ..+.+|+.++|.|.+.+..|.+ .|+|||||+.+
T Consensus       328 ~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~  386 (438)
T 1qgc_4          328 WGQGTVVTVSAAKTTPPSVYPLAPG--SAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSS  386 (438)
T ss_dssp             BCCCEEEEECSSCCBCCEEEEECCC--GGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCS
T ss_pred             eCCCEEEEEecCCCCCCeEEEcCcc--cccccCCcEEEEEEeccccCCCcEEEEecCCCCC
Confidence            45678999985 3344555432211  1357899999999998766888 99999998764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.30  E-value=2.9e-06  Score=52.45  Aligned_cols=53  Identities=11%  Similarity=0.111  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCC--CCc-eEEEEECCEEc
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAK--PAA-KIVWYRGNTEL   63 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~--P~~-~i~W~~~~~~l   63 (65)
                      +.|.|..+|....-...  +....+.+|+.++|.|.+.+..  |++ .|.|+++|+.+
T Consensus       218 ~~l~V~~~~~~~~~~~~--~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          218 KILTVIPSQDHRFKLIL--DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEEEEECCCCCCEEEEC--CSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB
T ss_pred             EEEEEECCCCCCCceec--CCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeee
Confidence            67888887754221112  2346889999999999997653  377 89999998763

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.29  E-value=3.4e-07  Score=57.17  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=39.9

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      ..+.|+|..+|..+....    ....+.+|+.++|.|.+..+.|.+.++||+++.
T Consensus       106 ~~~~l~V~~~p~~~~~~~----~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~  156 (404)
T 3p3y_A          106 NRIRLQVSKSPLWPKENL----DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM  156 (404)
T ss_dssp             EEEEEEECCCCCCCCCCC----CCEEEETTSCEEECCCCCCCSSCCEEEEECTTS
T ss_pred             eeEEEEEeccCccccCCC----CCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCc
Confidence            457888888876543321    225789999999999987788999999999874

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.29  E-value=6e-07  Score=47.51  Aligned_cols=30  Identities=17%  Similarity=0.410  Sum_probs=25.0

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+..|++++|+|.+.+ .|+  |+|+|||+++.
T Consensus        10 v~~~G~~v~L~C~~~g-~P~--i~W~kdg~~l~   39 (82)
T 3r08_E           10 VSISGTSVELTCPLDS-DEN--LKWEKNGQELP   39 (82)
T ss_dssp             EEEETTEEEEECSSCC-CSS--CEEEETTEECT
T ss_pred             EEEcCCeEEEEEECCC-CCc--EEEEECCEECc
Confidence            5678999999999864 563  99999999874

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.28  E-value=9.7e-07  Score=50.21  Aligned_cols=34  Identities=18%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.++|||+|+.+.
T Consensus        14 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~   47 (194)
T 2a38_A           14 SVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVIS   47 (194)
T ss_dssp             CEEEETTSCEEEEEEEE-EESCCEEEEEESSSBCC
T ss_pred             ceEEECCCEEEEEEEEE-ecCCCEEEEEECCEEcc
Confidence            35789999999999985 47889999999997653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.28  E-value=2e-06  Score=48.59  Aligned_cols=34  Identities=21%  Similarity=0.543  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.++|||++..+.
T Consensus        11 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~k~~~~~~   44 (182)
T 1rhf_A           11 KLTVSQGQPVKLNCSVEG-MEEPDIQWVKDGAVVQ   44 (182)
T ss_dssp             EEEEETTCCEEEEEEEES-CSSCCEEEEETTEECC
T ss_pred             ceEEeCCCcEEEEEEEeC-CCCCeEEEEECCeecC
Confidence            357899999999999975 7999999999998764

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=8.4e-07  Score=46.77  Aligned_cols=33  Identities=27%  Similarity=0.672  Sum_probs=28.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+  +.|.+.|+|||+++.+.
T Consensus        17 ~~~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~   49 (103)
T 2dku_A           17 NLQVEEKGTAVFTCKT--EHPAATVTWRKGLLELR   49 (103)
T ss_dssp             CEEEETTSEEEEEEEC--SSCCSCCEEEESSCBCC
T ss_pred             cEEEeCCCcEEEEEEe--CCCCCeEEEEeCCEECC
Confidence            4678999999999994  57889999999998763

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.28  E-value=1.2e-06  Score=52.59  Aligned_cols=51  Identities=16%  Similarity=0.354  Sum_probs=37.9

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.|+|..+|.   +...+  ....+.+|+.++|.|.+.+ +|++.|+||++|..+
T Consensus        91 ~~~~l~v~~~~~---~~~~~--~~~~~~~g~~v~l~C~~~~-~p~~~v~W~~~~~~~  141 (291)
T 1qz1_A           91 ATVNVKIFQKLM---FKNAP--TPQEFKEGEDAVIVCDVVS-SLPPTIIWKHKGRDV  141 (291)
T ss_dssp             EEEEEEEECCSE---EEECC--SSEEEETTSCEEECCEEEC-SSCCEEEEEETTSCS
T ss_pred             EEEEEEeecccc---ccCCC--CcccccCCCeEEEEEEecc-CCCCEEEEEECCEEc
Confidence            456777776663   33222  2357899999999999965 688999999998765

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.28  E-value=8.9e-08  Score=51.45  Aligned_cols=33  Identities=18%  Similarity=0.527  Sum_probs=28.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||+|+.+
T Consensus        23 ~~~v~~G~~v~L~C~~~-g~p~p~v~W~k~g~~l   55 (106)
T 1nct_A           23 SMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVL   55 (106)
T ss_dssp             CEEESSSSCEECCEEEE-CSSCCBCCBCSSSSCC
T ss_pred             CEEEeCCCcEEEEEEEE-EcCCCEEEEEECCEEC
Confidence            35789999999999995 5799999999998765

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.28  E-value=1.5e-06  Score=50.74  Aligned_cols=34  Identities=29%  Similarity=0.578  Sum_probs=30.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||+|+.+.
T Consensus        27 ~~~~~~G~~v~l~C~~~-g~p~p~i~W~~~g~~l~   60 (215)
T 3mtr_A           27 AVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLP   60 (215)
T ss_dssp             EEEECTTCCEEEEEEEE-EESCCEEEEEETTEESS
T ss_pred             eEEEECCCCEEEEEEEe-ecCCCEEEEEECCeECC
Confidence            47889999999999986 47899999999999874

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.27  E-value=2.1e-06  Score=50.28  Aligned_cols=45  Identities=22%  Similarity=0.161  Sum_probs=34.4

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .++|.|+.+...|.+..          .+..++|+|.+.+ .|.+.|+||+||+.+
T Consensus        97 ~~~L~V~~~~~~P~i~~----------~~~~v~L~C~~~~-~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A           97 IFDLKIQERVSKPKISW----------TCINTTLTCEVMN-GTDPELNLYQDGKHL  141 (182)
T ss_dssp             EEEEEEECCCCCCEEEE----------ETTTTEEEEECSS-CSSCEEEEEESSCEE
T ss_pred             EEEEEEcCcCCCCEEEE----------ccCcEEEEeEccC-CCCCEEEEEECCEEC
Confidence            46789988776666642          2346899999965 478999999999865

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.27  E-value=1.2e-06  Score=50.94  Aligned_cols=41  Identities=12%  Similarity=0.238  Sum_probs=31.2

Q ss_pred             CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        18 ~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..|.|...+.   ..+.+|+.++|.|.+.  .|.+.+.|||+|+.+
T Consensus         7 ~~P~i~~~p~---~~v~~G~~v~L~C~~~--~~~~~~~w~k~g~~~   47 (201)
T 1nkr_A            7 RKPSLLAHPG---PLVKSEETVILQCWSD--VMFEHFLLHREGMFN   47 (201)
T ss_dssp             CCCEEEEESC---SEEETTCCEEEEEEES--SCCSEEEEEEESSSC
T ss_pred             CCCeEEEEcC---CccCCCCcEEEEEecc--CCCCEEEEEECCCcC
Confidence            3456665443   3678999999999985  478899999998643

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.26  E-value=1.7e-06  Score=50.34  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+. +.|.+.|+|||+|+.+.
T Consensus        16 ~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~~~~~   48 (212)
T 2yd6_A           16 QTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVS   48 (212)
T ss_dssp             EEEETTSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             eEEecCCeEEEEEEEe-eCCCCEEEEEECCcCCC
Confidence            5788999999999996 57999999999998764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.26  E-value=2.7e-06  Score=48.54  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=27.0

Q ss_pred             EEeec-CCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728          31 IEIRE-NQEITLECLVKNAKPA--AKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~-G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~   64 (65)
                      +.+.+ |+.++|.|.+.+. |.  +.++|||+|..+.
T Consensus        12 ~~v~~~G~~v~l~C~~~~~-~~~~~~v~W~~~~~~~~   47 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNLTSS-SHTLMYSYWTKNGVELT   47 (190)
T ss_dssp             EECCCSSSCEEEEEEEEEC-SSCEEEEEEEETTEECT
T ss_pred             EEEccCCceEEEEEEeccC-CCCceEEEEEECCEECc
Confidence            45666 9999999998654 54  8999999999874

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.26  E-value=9e-07  Score=58.97  Aligned_cols=49  Identities=10%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.|+|..+|..+       +....+.+|+.++|.|.+.+++|.+.|+|||+|+.+
T Consensus       221 ~~~l~V~~~p~~~-------p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l  269 (527)
T 3qs9_E          221 LFTIDLNQTPQTT-------LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL  269 (527)
T ss_dssp             CEEEESSSCCCCS-------CCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCC
T ss_pred             EEEEEEeccCccC-------CCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEEC
Confidence            4677777766531       124578999999999999757899999999998754

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.26  E-value=4.1e-07  Score=50.37  Aligned_cols=33  Identities=15%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||+++.+
T Consensus        30 ~~~v~~G~~v~L~C~~~-g~P~p~i~W~k~~~~~   62 (137)
T 3qr2_A           30 SQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGP   62 (137)
T ss_dssp             CEEEETTSCEEEEEEEE-CSSCCEEEEEEEESST
T ss_pred             CEEEeCCCCEEEEEEEe-eecCCeEEEEECCCCc
Confidence            46789999999999985 4799999999987543

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.26  E-value=2.7e-07  Score=55.02  Aligned_cols=55  Identities=22%  Similarity=0.384  Sum_probs=38.4

Q ss_pred             cCCCEEEEEEc---------CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEE-CCEEc
Q psy7728           5 YGPRTRLYQFA---------PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYR-GNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~---------pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~-~~~~l   63 (65)
                      ++..+.|+|..         +| .+.|.. +.  ...+.+|+.++|.|.+.+..|. +.|+|+| ||+.+
T Consensus       109 ~~~~~~L~V~~~~~~l~~~~~p-~~~v~~-p~--~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l  174 (230)
T 1ypz_F          109 FAEGTKLIVIPSDKRLDADISP-KPTIFL-PS--VAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTI  174 (230)
T ss_dssp             ECSCEEEEEECCCTTCCSCCSC-CCCEEC-CC--HHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCB
T ss_pred             cCCCEEEEEecccccCcccCCC-CceEEC-CC--chhhccCCcceEEEEEeeecCCCeEEEEEccCCeEc
Confidence            56778999982         33 334432 11  1134578999999999887786 6999999 87654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=3.5e-07  Score=48.32  Aligned_cols=32  Identities=16%  Similarity=0.421  Sum_probs=27.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.+ .| +.++|||||+++.
T Consensus        18 ~~v~~G~~v~l~C~~~~-~~-~~v~W~k~g~~i~   49 (101)
T 2edk_A           18 QQVFVGDRVEMAVEVSE-EG-AQVMWMKNGVELT   49 (101)
T ss_dssp             EEEESSCCCBCCEEESC-SS-CCCEEEESSCBCC
T ss_pred             eEEcCCCCEEEEEEEeC-CC-CEEEEEECCEECC
Confidence            57899999999999965 56 8999999998763

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.26  E-value=1.5e-06  Score=52.31  Aligned_cols=56  Identities=20%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             cCCCEEEEEEcCCCc----------cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE--CCE
Q psy7728           5 YGPRTRLYQFAPPSS----------IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR--GNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~----------~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~--~~~   61 (65)
                      ++..+.|+|..+|..          ........+..+.+.+|+.++|.|.+.+ .|++.|.|||  +|+
T Consensus       113 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~g~  180 (257)
T 1f3r_B          113 WGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ-NINNYLAWYQQKLGE  180 (257)
T ss_dssp             ECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS-CCBTCEEEEEECTTS
T ss_pred             cCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC-cCCCcEEEEEECCCC
Confidence            456788999876521          1111111223456899999999999865 5667999999  554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.25  E-value=8.9e-07  Score=50.30  Aligned_cols=35  Identities=23%  Similarity=0.477  Sum_probs=29.7

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+.+ .|.+.|+|||+|..+.
T Consensus        15 ~~~~~~~G~~v~l~C~~~~-~p~~~i~W~~~~~~~~   49 (192)
T 2iep_A           15 ETVDALVEEVATFMCAVES-YPQPEISWTRNKILIK   49 (192)
T ss_dssp             CEEEEETTSCEEEECCEEE-ESCCEEEEEETTEECC
T ss_pred             cceeeeCCCcEEEEeeCCC-CCCCeEEEEECCEEcc
Confidence            3467899999999999864 7889999999998763

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.25  E-value=1.5e-06  Score=54.40  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.++.|.+.|+|||||..+.
T Consensus        30 ~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~   64 (403)
T 3laf_A           30 DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA   64 (403)
T ss_dssp             CEEECTTCCEEECCEEECTTCCCEEEEEETTEECC
T ss_pred             ceEEecCCcEEEEEEcCCCCCCceEEEEECCEECc
Confidence            46789999999999998888999999999998863

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.25  E-value=1.8e-06  Score=49.10  Aligned_cols=33  Identities=18%  Similarity=0.510  Sum_probs=26.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCce-EEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAK-IVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+.+ .|.+. ++|||+|+.+.
T Consensus        17 ~~v~~G~~v~L~C~~~~-~p~~~~~~W~~~~~~~~   50 (175)
T 1fnl_A           17 YSVLEKDSVTLKCQGAY-SPEDNSTQWFHNESLIS   50 (175)
T ss_dssp             SEEETTCCEEEEEECCC-BTTBCCCEEEETTEEEE
T ss_pred             eeeeCCCcEEEEeeCCC-CCCCcceEEEECCEEcc
Confidence            36889999999999865 45554 89999998764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.25  E-value=2.6e-06  Score=51.53  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.+|+.++|.|.+.+++|.+.++|||+|+++.
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~  150 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF  150 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEEC
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECe
Confidence            35789999999999998688999999999998864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.24  E-value=3e-06  Score=51.22  Aligned_cols=35  Identities=11%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|+|....++|.+.|+|||||+++.
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~   44 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTE   44 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECT
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECC
Confidence            46789999999999998789999999999999874

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.24  E-value=4.6e-07  Score=55.46  Aligned_cols=53  Identities=17%  Similarity=0.335  Sum_probs=38.8

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ...+.|+|..+|..+... ..    ..+.+|+...+.|.+.+++|++.|+||+++..+
T Consensus       107 ~~~~~l~v~~~P~~~~~~-~~----~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~  159 (313)
T 4fqp_A          107 SVDIWLRVLAKPQNTAEV-QK----VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM  159 (313)
T ss_dssp             EEEEEECCBBCCEEEEEE-CC----BCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             eeeeeeeeccCCcceecc-cc----eEeecCceEEEEEEccCccCCcEEEeecCCccc
Confidence            344677777787653322 11    246778888999999889999999999998654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.24  E-value=6.8e-07  Score=47.54  Aligned_cols=32  Identities=16%  Similarity=0.595  Sum_probs=27.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.+ .|.+ ++|||||+.+.
T Consensus        18 ~~v~~G~~v~l~C~~~~-~~~~-v~W~k~g~~~~   49 (106)
T 2dlt_A           18 LTVKAAEQAVFKCEVSD-EKVT-GKWYKNGVEVR   49 (106)
T ss_dssp             EEEESSCCEECCCEESC-SSCE-EEEEESSCBCC
T ss_pred             eEEeCCCeEEEEEEEcC-CCcc-eEEEcCCEECc
Confidence            57899999999999964 5666 99999998763

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.24  E-value=1.6e-06  Score=45.12  Aligned_cols=32  Identities=25%  Similarity=0.585  Sum_probs=26.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+.+   .+.|+|||+|..+.
T Consensus        10 ~~~v~~G~~~~l~C~~~~---~p~v~W~k~g~~~~   41 (95)
T 4hwu_A           10 AYVVAPGESLELQCMLKD---AAVISWTKDGVHLG   41 (95)
T ss_dssp             EEEECTTSCEEEECCCCT---TCEEEEEETTEEEC
T ss_pred             cEEECCCCEEEEEEEeCC---CCEEEEEECCEECC
Confidence            357899999999999854   57999999998763

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.24  E-value=2e-06  Score=48.57  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=25.9

Q ss_pred             EEeecCCcEEEEEEecCC--CCCceEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNA--KPAAKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~--~P~~~i~W~~~~   60 (65)
                      +.+.+|+.++|.|.+.+.  .|.|.|+||||.
T Consensus        17 v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk   48 (126)
T 2dav_A           17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGK   48 (126)
T ss_dssp             CEEETTCCEEEEEEEECCCSSSCCEEEEEESS
T ss_pred             eEEeCCCCEEEEEEEeccCCCCCCcEEEeeCc
Confidence            478999999999998653  599999999974

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.24  E-value=3.7e-06  Score=49.18  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=36.5

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCC-CCCceEEEEECCEE
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNA-KPAAKIVWYRGNTE   62 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~~~   62 (65)
                      ..+.|.|.. +..+.+...+. ..+.+.+|+.++|.|.+.+. .|++.|+|+++|+.
T Consensus        93 ~~~~l~v~~-~~~p~~~~~~~-~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~  147 (213)
T 2x1w_L           93 IMYIVVVVG-YRIYDVVLSPS-HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK  147 (213)
T ss_dssp             CCEEEEECB-CCEEEEEEESC-SCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS
T ss_pred             EEEEEEEeC-CcccceEEcCC-CCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc
Confidence            346777754 33344433232 23578999999999999754 34568999999865

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.23  E-value=5.3e-06  Score=52.88  Aligned_cols=54  Identities=19%  Similarity=0.309  Sum_probs=40.6

Q ss_pred             CCCEEEEEEcC-CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC--CceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAP-PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP--AAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~p-P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P--~~~i~W~~~~~~l~   64 (65)
                      +.++.|+|... +..|.+.. +    ..+.+|+.++|.|.+.+..|  .+.++|+++|+.+.
T Consensus       177 s~~~~l~v~~~~~~~p~~~~-~----~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~  233 (450)
T 1z7z_I          177 SAPYQLQTFVLPATPPQLVS-P----RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN  233 (450)
T ss_dssp             CCCEECEECCCCSSCCEEEC-C----SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECC
T ss_pred             cCccceeeeccCCCCCEecC-c----eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCC
Confidence            35677888765 34445433 2    27899999999999987657  79999999998764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.23  E-value=4e-06  Score=49.52  Aligned_cols=56  Identities=14%  Similarity=0.121  Sum_probs=40.4

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-c----eEEEEECCEEcc
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-A----KIVWYRGNTELK   64 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~----~i~W~~~~~~l~   64 (65)
                      .+..+.|.|..++..+.+...+.   ..+.+|+.++|+|.+.+ .|. +    .+.||++++.+.
T Consensus       157 ~~~~~~l~V~~~~~~p~~~~~~~---~~~~~g~~~~l~C~~~~-~p~~p~~~~~~~w~~~~~~~~  217 (262)
T 3rjd_A          157 TSAGISVTVKELFPAPVLNASVT---SPLLEGNLVTLSCETKL-LLQRPGLQLYFSFYMGSKTLR  217 (262)
T ss_dssp             EEECEEEEEECSSCCCEEEESSC---SSEETTCCEEEEEECCC-CCC-----EEEEEEETTEEEE
T ss_pred             cccceEEEeccCCCCCeEeecCc---eeecCCCeEEEEeEccc-CCCCCCccEEEEEEeCCcEec
Confidence            44567899987655666665443   25789999999999965 453 4    379999998764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.23  E-value=8.5e-07  Score=55.99  Aligned_cols=30  Identities=30%  Similarity=0.659  Sum_probs=26.6

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+|+.+.|.|.+. |+|.|.|+|||||+++.
T Consensus        21 ~eg~~v~L~C~~~-g~P~p~i~W~k~g~~l~   50 (384)
T 3kld_A           21 SEEKKVKLSCEVK-GNPKPHIRWKLNGTDVD   50 (384)
T ss_dssp             CSCSEEEECCEEE-EESCCEEEEEETTEECC
T ss_pred             CCCCeEEEEeEec-CCCCCEEEEEECCEECc
Confidence            5899999999995 58999999999999873

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.23  E-value=4.5e-06  Score=49.56  Aligned_cols=52  Identities=12%  Similarity=0.249  Sum_probs=34.4

Q ss_pred             cCCCEEEEEEcCCC-----------ccEEEeCCCCCeEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728           5 YGPRTRLYQFAPPS-----------SIEIVGHPSNSKIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~pP~-----------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      ++..+.|+|..+|.           .+.+...+.   ..+.+|+.++|.|.+.+.. |.+.+.|||+
T Consensus       103 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A          103 FGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGP---ELKKPGETVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             ECCCEEEEEC---------------CCEEEECCC---EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ECCCEEEEEECCccccccccccccCceEEeCCCc---eeecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence            56678999988653           223332222   3589999999999997653 3579999996

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.23  E-value=1.8e-06  Score=49.07  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=26.1

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+.+..++..++|||++..+.
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~   47 (176)
T 1f2q_A           14 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE   47 (176)
T ss_dssp             SEEETTCCEEEECCTTCC----CCEEEETTEECS
T ss_pred             cceecCCcEEEEEeCCCCCCcceEEEEECCeECC
Confidence            4689999999999997654445799999998864

>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}

Probab=98.22  E-value=2.4e-06  Score=47.76  Aligned_cols=32  Identities=13%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ...|+.++|+|.+.+..|+ .+|+|+|||+++.
T Consensus        35 ~~~g~~~~L~C~~~gFyP~~I~v~W~knG~~~~   67 (119)
T 3jts_B           35 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE   67 (119)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             ccCCCcEEEEEEEeCccCCCEEEEEEECCEECC
Confidence            3567789999999998887 4899999999874

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.22  E-value=1.3e-06  Score=56.79  Aligned_cols=56  Identities=14%  Similarity=0.095  Sum_probs=41.3

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce-EEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK-IVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~l~   64 (65)
                      ...+.|+|..+|.... .. .......+.+|+.++|.|.+ .++|.+. |+|||+|+++.
T Consensus       300 ~~~~~l~V~~~p~~~~-~~-~~~~~~~v~~G~~v~l~C~~-~g~P~p~~v~W~k~g~~~~  356 (524)
T 2ec8_A          300 NVTTTLEVVDKGFINI-FP-MINTTVFVNDGENVDLIVEY-EAFPKPEHQQWIYMNRTFT  356 (524)
T ss_dssp             EEEEEEEEESSCEEEE-EE-SSCSEEEECTTCCEEEEEEE-EEESCCCEEEEESSSCBCS
T ss_pred             EEEEEEEEeccCceEe-ec-CCCceEEEcCCCcEEEEEEE-eecCCCcEEEEEECCeecc
Confidence            3467899998874322 11 11235689999999999998 4578888 99999998764

>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}

Probab=98.22  E-value=2.4e-06  Score=47.75  Aligned_cols=31  Identities=13%  Similarity=0.350  Sum_probs=26.8

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..|+.++|+|.+.+..|+ ..|+|+|||+++.
T Consensus        36 ~~g~~~~L~C~v~gFyP~~I~v~W~knG~~~~   67 (119)
T 3o81_A           36 SAGTKNVLNCFAAGFHPPKISITLMKDGVPME   67 (119)
T ss_dssp             CTTSCEEEEEEEEEESSSCCEEEEEETTEECT
T ss_pred             cCCCcEEEEEEEecccCCCcEEEEEECCEECC
Confidence            457789999999998887 5899999999874

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.22  E-value=4.3e-06  Score=47.52  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=29.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.+|+.++|.|.+. ++|.+.|+||+++..+.
T Consensus       122 ~~~~~~g~~~~l~C~~~-g~p~p~v~W~~~~~~~~  155 (201)
T 3s97_C          122 DVYALMGQNVTLECFAL-GNPVPDIRWRKVLEPMP  155 (201)
T ss_dssp             CEEEETTCCEEEEEEEE-EESCCEEEEEETTBCCC
T ss_pred             ceEEecCCcEEEEEEcc-CCCCCceEEEeCCCcCC
Confidence            35789999999999985 57999999999987653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.22  E-value=5.7e-07  Score=56.16  Aligned_cols=48  Identities=8%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCC----CCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNA----KPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~----~P~~~i~W~~~~~~l   63 (65)
                      .+.|.|..+|..+        ..+.+.+|+.++|.|.+.++    +|.+.|+|+++|..+
T Consensus       171 ~~~l~v~~~p~~~--------~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~  222 (363)
T 1wio_A          171 KIDIVVLAFQKAS--------SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASS  222 (363)
T ss_dssp             CCEECEECCSCSE--------EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCC
T ss_pred             EEEEEEecCCCCC--------CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCc
Confidence            4577787777643        22468899999999988654    788999999998764

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.22  E-value=1e-06  Score=52.21  Aligned_cols=56  Identities=20%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             cCCCEEEEEE-cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEECCEE
Q psy7728           5 YGPRTRLYQF-APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~-~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~   62 (65)
                      ++..+.|+|. .++..|.+.....  ...+.+|+.++|.|.+.+..| +..++|+++|+.
T Consensus       117 ~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~  174 (232)
T 3qhz_H          117 WGRGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  174 (232)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECC---------CEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             eCCCeEEEEecCCCCCCEEEEecc--cccccCCCcEEEEEEEeeEeCCCeEEEEEECCEe
Confidence            5677899998 4556667653221  124567999999999988776 456889999863

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.22  E-value=3.1e-06  Score=52.21  Aligned_cols=30  Identities=27%  Similarity=0.635  Sum_probs=25.6

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +|+.++|.|.+.+..|++ .|+|||||+++.
T Consensus       233 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~  263 (323)
T 2wqr_A          233 SRDKRTLACLIQNFMPEDISVQWLHNEVQLP  263 (323)
T ss_dssp             CTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCcEEEEEEeeeeeCCCcEEEEEECCEECC
Confidence            499999999998766654 899999999874

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.21  E-value=1.9e-06  Score=55.38  Aligned_cols=56  Identities=18%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~   62 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+|+.++|.|.+.+..|. +.|+|||+++.
T Consensus       117 ~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~  174 (457)
T 1hzh_H          117 WGKGTTVIVSSASTKGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  174 (457)
T ss_dssp             CCCCEEEEECSCCCBCCEEEEECCC--SCCCTTCCEEEEEEEESBBSCCCEEEETTTTBC
T ss_pred             ECCcEEEEecCCCCCCCeEEecCcc--ccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEe
Confidence            45678999986 3334455432211  136799999999999877685 89999999854

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.21  E-value=4.6e-06  Score=49.11  Aligned_cols=53  Identities=17%  Similarity=0.360  Sum_probs=37.5

Q ss_pred             cCCCEEEEEEcCCCc---------cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728           5 YGPRTRLYQFAPPSS---------IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~---------~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      ++..+.|.|..++..         +.+...  +..+.+.+|+.++|.|.+.+ .|.+.|.|||++
T Consensus       104 ~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~-~p~~~i~W~k~~  165 (238)
T 2p1y_A          104 FGHGTKLSVLGSADDAKKDAAKKDGQVRQS--PQSLTVWEGETAILNCSYEN-SAFDYFPWYQQF  165 (238)
T ss_dssp             ECCCEEEEEECCCHHHHHHHHHHHTCCEEE--CSEEEEETTSCEEEEEECCC-TTCCEEEEEEEC
T ss_pred             eCCCeEEEEeccCCCCcCCcccceeeEEcc--CceEEEeCCCeEEEEEEEec-CCCCcEEEEEEC
Confidence            446788999876541         122211  23457899999999999855 678999999963

>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2

Probab=98.21  E-value=1.6e-06  Score=48.37  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ...|+.++|.|.+.+.+|+. +|+|+|||+++.
T Consensus        35 ~~~~~~~tL~C~a~gFyP~~I~v~W~knG~~i~   67 (119)
T 1bii_B           35 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP   67 (119)
T ss_dssp             CCSSSCEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             ccCCCCEEEEEEEEeecCCCeEEEEEECCEECC
Confidence            35677899999999988864 899999999874

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.20  E-value=7e-07  Score=54.79  Aligned_cols=51  Identities=10%  Similarity=0.165  Sum_probs=36.2

Q ss_pred             CCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728           6 GPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus         6 ~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      ...+.|+|...+ ..|.+.. ..+....+.+|+.++|.|.+. ++|.+.|+|||
T Consensus       207 ~~~~~l~V~~~~~~~p~~~~-~~~~~~~~~~G~~v~l~C~~~-g~p~p~v~W~~  258 (334)
T 1ry7_B          207 RQTYTLDVLERSPHRPILQA-GLPANQTAVLGSDVEFHCKVY-SDAQPHIQWLK  258 (334)
T ss_dssp             EEEEEEEEECCCCSSCBCCT-TCSCCEEEESSCCEEECCCCB-CSSCEEEEEEE
T ss_pred             EEEEEEEEecCCCCCCceEe-cCCCceEEeCCCCEEEEEEEe-cCCCCeEEEEE
Confidence            345788888743 3333322 122345789999999999995 58999999999

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.20  E-value=2.6e-06  Score=48.35  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=28.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEE-CCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYR-GNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l~   64 (65)
                      ..+.+|+.++|.|.+.+..|.+.|+||| ||+.+.
T Consensus        12 ~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~   46 (191)
T 1epf_A           12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS   46 (191)
T ss_dssp             EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC
T ss_pred             cEEcCCCCEEEEEECCCCCCCceEEEEeCCCcccc
Confidence            4678999999999997755589999999 887653

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.20  E-value=3.5e-06  Score=51.46  Aligned_cols=53  Identities=11%  Similarity=0.279  Sum_probs=36.2

Q ss_pred             cCCCEEEEEEcCCC------------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE--CCE
Q psy7728           5 YGPRTRLYQFAPPS------------SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR--GNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~pP~------------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~--~~~   61 (65)
                      ++..+.|+|..+|.            .+.+...  +..+.+.+|+.++|.|.+.+ .| +.|.|||  +|+
T Consensus       136 ~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~g~  202 (282)
T 1qok_A          136 WGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQS--PAIMSASPGEKVTITCSASS-SV-SYMHWFQQKPGT  202 (282)
T ss_dssp             ECCCEEEEEEC---------------CCCEEEE--CSEEEECTTCCEEEEEEESS-CC-SCCEEEEECTTS
T ss_pred             eCCCEEEEEecCCcccCCccCCCCccceEEecC--CCEEEEcCCCcEEEEEEecC-CC-ceEEEEEECCCC
Confidence            45678999998763            2223221  23457899999999999965 46 8999999  554

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.20  E-value=8.6e-07  Score=50.53  Aligned_cols=30  Identities=10%  Similarity=0.076  Sum_probs=26.4

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .+.+|+.++|.|.+.+ .|.+.++||+++..
T Consensus       108 ~v~~g~~~~l~C~~~~-~p~~~v~W~~~~~~  137 (184)
T 2ny1_B          108 HLLQGQSLTLTLESPP-GSSPSVQCRSPRGK  137 (184)
T ss_dssp             EEETTCCEEEEEECCT-TCCCEEEEECTTSC
T ss_pred             eeecCCCEEEEEEcCC-CCCCEEEEEeCCCc
Confidence            6789999999999966 69999999999754

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.20  E-value=1.8e-07  Score=56.73  Aligned_cols=57  Identities=12%  Similarity=0.173  Sum_probs=38.2

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ...+.|+|.++|....-........+.+.+|+.++|.|.+. ++|.+.|+|+++++.+
T Consensus        89 ~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~  145 (305)
T 2nzi_A           89 SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKPDPVITWQKGQDLI  145 (305)
T ss_dssp             EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEE-EESCCEEEEEESSSBC
T ss_pred             cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEEC-CCCCCEEEEEECCEEC
Confidence            44577888776532100000011235788999999999995 5799999999998765

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.20  E-value=4.1e-06  Score=54.98  Aligned_cols=51  Identities=12%  Similarity=0.171  Sum_probs=39.5

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      ...+.|+|..+|..   .  .....+.+.+|+.++|.|.+.++.|++.+.|||++.
T Consensus       102 ~~~~~l~V~~~p~~---~--~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~  152 (585)
T 2ocw_A          102 SFDVSLEVSQGPGL---L--NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIG  152 (585)
T ss_pred             eEEEEEEEecCccc---c--CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCC
Confidence            34578889888753   2  122346789999999999998777888999999875

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.20  E-value=2.6e-06  Score=48.55  Aligned_cols=32  Identities=16%  Similarity=0.390  Sum_probs=27.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.+.+.|.+. +.|+|.|+|||+++.+
T Consensus       128 ~~~~~~~~~~~~c~~~-g~p~p~i~W~~~~~~~  159 (218)
T 4frw_A          128 LEEGQGLTLAASCTAE-GSPAPSVTWDTEVKGT  159 (218)
T ss_dssp             EETTCCSEEEEEEEEE-EBSCCEEEEEESSCCE
T ss_pred             eeeeeccccceeeecc-CCcCceEEEEECCccc
Confidence            4678899999999985 5799999999998654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.19  E-value=1.5e-06  Score=50.85  Aligned_cols=31  Identities=13%  Similarity=0.469  Sum_probs=26.5

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+|+.++|.|.+.+..|+ +.|+|+|||+++.
T Consensus       122 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  153 (207)
T 2vol_A          122 MAKDKVSLTCMITDFFPEDITVEWESNGQPAE  153 (207)
T ss_dssp             GSSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             hcCCceEEEEEEeeEECCCCEEEEEECCEecc
Confidence            369999999999887776 5999999999864

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=4.3e-07  Score=47.94  Aligned_cols=31  Identities=19%  Similarity=0.523  Sum_probs=26.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+.+|+.++|.|.+.+ .| +.|+|||++..+
T Consensus        13 ~~v~~G~~v~L~C~~~g-~p-p~i~W~k~g~~~   43 (99)
T 2cr3_A           13 FLVHPGDLLQLRCRLRD-DV-QSINWLRDGVQL   43 (99)
T ss_dssp             CCBCTTSCEEEECCCCS-SC-CEEEEEESSSBC
T ss_pred             eEEeCCCcEEEEEEecC-CC-CeEEEEECCEEC
Confidence            36789999999999865 56 699999999765

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.19  E-value=2.8e-06  Score=51.29  Aligned_cols=52  Identities=10%  Similarity=0.236  Sum_probs=36.3

Q ss_pred             cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC----ceEEEEE--CCE
Q psy7728           5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA----AKIVWYR--GNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~----~~i~W~~--~~~   61 (65)
                      ++..+.|+|..+|.   +...  +..+.+.+|+.++|.|.+.+..++    +.|.|||  +|+
T Consensus       110 ~~~~~~L~V~~~~~---v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~  167 (256)
T 1nqb_A          110 WGQGTTVTVSSDIE---LTQT--PLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQ  167 (256)
T ss_dssp             ECCCEEEEECCCCC---EEEE--CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS
T ss_pred             EcCceeeeeccccc---EEec--CcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCC
Confidence            45567888886653   2211  234578999999999999765443    4999999  554

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.19  E-value=1.4e-06  Score=51.39  Aligned_cols=31  Identities=19%  Similarity=0.507  Sum_probs=26.5

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .+|+.++|.|.+.+.+|++ .|+|+|||+++.
T Consensus       130 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  161 (218)
T 2rgs_A          130 LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE  161 (218)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             hcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence            3599999999998877775 999999998764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.19  E-value=2.6e-06  Score=48.33  Aligned_cols=33  Identities=27%  Similarity=0.625  Sum_probs=29.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.++|||++..+
T Consensus        16 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~   48 (197)
T 3lcy_A           16 DVTTKLGEAAQLSCQIVG-RPLPDIKWYRFGKEL   48 (197)
T ss_dssp             CEEEETTSEEEEEEEEEE-ESCCEEEEEETTEEE
T ss_pred             ceEEeCCCcEEEEEEEec-CCCCEEEEEECCEEC
Confidence            467899999999999954 789999999999876

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.19  E-value=4.7e-06  Score=50.62  Aligned_cols=52  Identities=15%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             cCCCEEEEEEcCCC------------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728           5 YGPRTRLYQFAPPS------------SIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~pP~------------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      ++..+.|+|..+|.            ...+...   ..+.+.+|+.++|.|.+.+..| .+.|.|||+
T Consensus       109 ~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p---~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  173 (276)
T 3auv_A          109 FGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVES---GGGLVQPGGSLRLSCAASGFTISDYWIHWVRQ  173 (276)
T ss_dssp             CCCCEEEEC-----------------CCEEEEE---CCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ccCCEEEEEecCCCccccccccccCcceEEECC---CceEecCCCeEEEEEEecCccCCCCEEEEEEc
Confidence            45668899987653            1223221   2357899999999999976543 589999996

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.18  E-value=3.9e-06  Score=49.16  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||++..+.
T Consensus        27 ~~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~   60 (218)
T 3k0w_A           27 SKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEIP   60 (218)
T ss_dssp             CEEEETTSBEEEECEET-TTTSSEEEEEETTEECT
T ss_pred             CeEEeCCCcEEEEeeec-CCCCCEEEEEECCEECC
Confidence            35789999999999995 57999999999998864

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.18  E-value=3.6e-06  Score=51.99  Aligned_cols=56  Identities=14%  Similarity=0.107  Sum_probs=38.8

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEec----CCCCCceEEEEECCEEcc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVK----NAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~----~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|+|..+|...... ...+....+.+|+.++|.|.+.    .+.|.+.|+|||||+++.
T Consensus       108 ~~~l~V~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~  167 (349)
T 4dep_C          108 AFPLEVVQKDSCFNSP-MKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ  167 (349)
T ss_dssp             EEEEEEECCCTTSCCS-CCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC
T ss_pred             EEEEEEecCCcccCcc-cccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC
Confidence            4678888866432111 0112234678999999999852    447999999999999874

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.18  E-value=1e-05  Score=49.12  Aligned_cols=52  Identities=13%  Similarity=0.234  Sum_probs=36.0

Q ss_pred             cCCCEEEEEEcCCC-----------------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728           5 YGPRTRLYQFAPPS-----------------SIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~pP~-----------------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      ++..+.|+|..+|.                 .+.+...+.   ..+.+|+.++|.|.+.+..+ .+.|.|||+
T Consensus       108 ~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          108 FGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP---EVVKTGASVKISCKASGYSFTGYFINWVKK  177 (264)
T ss_dssp             ECCCEEEEEECC-------------------CCEEEECCC---EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCC---EEEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence            56678999998752                 223332221   36899999999999976533 379999996

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.18  E-value=3.4e-06  Score=48.60  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=30.8

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +|.|...+..   .+.+|+.++|.|.+.+  |++.+.|||+|..+
T Consensus         5 ~P~i~~~p~~---~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~   44 (196)
T 3p2t_A            5 KPTLWAEPGS---VISWGNSVTIWCQGTL--EAREYRLDKEESPA   44 (196)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEECCT--TCCEEEEEETTSCS
T ss_pred             CCEEEccCCC---cCCCCCcEEEEeeCCC--CCCEEEEEECCCCC
Confidence            4456544432   6889999999999865  77899999998764

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.17  E-value=3.7e-06  Score=49.36  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=26.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      ..+.+|+.+.|.|.+.++.|+|.|+|||++
T Consensus       128 ~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~  157 (226)
T 4f80_A          128 VKGYKDGGIHLECRSTGWYPQPQIQWSNNK  157 (226)
T ss_dssp             EEEEETTEEEEEEEEEEEBSCCEEEEECTT
T ss_pred             eeeccCCceeeEEEeccCCCCCEEEEEECC
Confidence            367889999999999888899999999965

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.17  E-value=3.9e-06  Score=54.32  Aligned_cols=54  Identities=17%  Similarity=0.379  Sum_probs=39.7

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-c-eEEEEECCE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-A-KIVWYRGNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~-~i~W~~~~~   61 (65)
                      ++..++|+|.. ++..|.+......   ...+|+.++|.|.+.+..|. + .|+|++++.
T Consensus       112 ~~~~~~l~V~~~~~~~P~i~~~~~~---~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~  168 (475)
T 1iga_A          112 WGQGTLVTVSSASPTSPKVFPLSLC---STQPDGNVVIACLVQGFFPQEPLSVTWSESGQ  168 (475)
T ss_pred             ecCceEEEeccCCCcCCeEEecCcc---ccCCCCeEEEEEEEeeecCCCceEEEEcCCCc
Confidence            56678999984 4555666543321   23789999999999887676 4 999999985

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.17  E-value=2.1e-06  Score=58.45  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.|.|.++|.......    ....+.+|+.++|.|.+.++.|++.|+||+||+.+
T Consensus       610 ~~~v~v~~~p~~~~~~~----~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l  661 (816)
T 3dmk_A          610 SLEVQVMVLPRIIPFAF----EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI  661 (816)
T ss_dssp             EEEEEEECCCCCBCCCC----CSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCC
T ss_pred             eEEEEEecCCccccccc----cccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEc
Confidence            46777788876432211    12357899999999999877777799999999876

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.17  E-value=6.9e-06  Score=49.16  Aligned_cols=53  Identities=11%  Similarity=0.303  Sum_probs=36.7

Q ss_pred             ccCCCEEEEEEcCCC-------------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728           4 RYGPRTRLYQFAPPS-------------SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~-------------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .++..+.|+|...+.             .+.+...  +..+.+.+|+.++|.|.+.+ .|.+.|.|||+
T Consensus       110 ~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~  175 (256)
T 3umt_A          110 YWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQS--PSSLSASLGERVSITCRASQ-DIGSNLNWLQQ  175 (256)
T ss_dssp             EECCCEEEEECC---------------CCCCEEEE--CSEEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             EECCCEEEEEcCCCccccCcccCCCCccccEEEcC--CCeEEEECCCCEEEEEEEec-CCCcEEEEEEE
Confidence            356778999985311             2233322  23467899999999999966 57779999994

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.17  E-value=4e-06  Score=50.02  Aligned_cols=29  Identities=31%  Similarity=0.694  Sum_probs=24.6

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      |..++|.|.+.+..|+ +.|+|||||+++.
T Consensus       133 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  162 (231)
T 2w59_A          133 LSRVTLSCLVRGFRPRDIEIRWLRDHRAVP  162 (231)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCceEEEEEEEeccCCCcEEEEEECCEECC
Confidence            5579999999887774 8999999999874

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.17  E-value=1.8e-06  Score=56.14  Aligned_cols=32  Identities=16%  Similarity=0.446  Sum_probs=26.9

Q ss_pred             eecCCcEEEEEEecCCCCC---ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA---AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~---~~i~W~~~~~~l~   64 (65)
                      +.+|+.++|.|.+.+..|+   +.|+|||||+++.
T Consensus       331 v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~  365 (523)
T 2rcj_C          331 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVH  365 (523)
T ss_pred             cccCCceEEEEEEecccCCCCceEEEEEECCeEcc
Confidence            6889999999999875444   6999999998863

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.17  E-value=4.1e-06  Score=50.19  Aligned_cols=48  Identities=19%  Similarity=0.361  Sum_probs=36.9

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ...+.|+|+..|. +.+.....    .+.+|+.++|.|.+.   |.+.|+|  ||+.+
T Consensus        88 ~~~~~l~V~~~p~-p~~~~~~~----~v~~G~~v~l~C~~~---p~~~i~W--~g~~~  135 (265)
T 2oz4_A           88 ETLQTVTIYSFPA-PNVILTKP----EVSEGTEVTVKCEAH---PRAKVTL--NGVPA  135 (265)
T ss_dssp             EEEEEEEEECCCC-CEEEESCS----EEETTCEEEEEEECC---TTSEEEE--SSCSS
T ss_pred             EEEEEEEEeCCCC-ceeecCCc----eecCCCcEEEEEEcc---CCCEEEE--CCEEc
Confidence            3468899988665 56654333    688899999999985   8999999  77654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.16  E-value=9.7e-06  Score=48.50  Aligned_cols=52  Identities=13%  Similarity=0.378  Sum_probs=36.6

Q ss_pred             cCCCEEEEEEcCCCc------------cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728           5 YGPRTRLYQFAPPSS------------IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus         5 ~~~~~~L~V~~pP~~------------~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      ++..+.|.|..++..            +.+...  +..+.+.+|+.++|.|.+.+..+.+.|.|||
T Consensus       123 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          123 WGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQA--PGTLSLSPGERATFSCRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             ECCCEEEEECSCC----------CCCCCCEEEE--CSEEEECTTSCEEEEEEESSCCTTCCEEEEE
T ss_pred             ECCceEEeecCCcccccccccCCCcceeEEEec--CCeEEEeCCCCEEEEEEECCCcCCeeEEEEE
Confidence            567789999886541            222222  2356889999999999997643348999999

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.16  E-value=7.2e-06  Score=48.89  Aligned_cols=53  Identities=15%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEEcCCC------------------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728           4 RYGPRTRLYQFAPPS------------------SIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus         4 ~~~~~~~L~V~~pP~------------------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .++..+.|+|..+|.                  .+.+...+.   ..+.+|+.++|.|.+.+..+ .+.+.|||+
T Consensus       102 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B          102 VFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGG---GLVQPGGSLRLSCAASGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             EECCCEEEEEC----------------------CCEEEEECC---EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCC---eEEcCCCeEEEEEEEeCCcccccEEEEEEE
Confidence            456778999988763                  223332222   35899999999999976432 789999996

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.16  E-value=1.6e-06  Score=51.09  Aligned_cols=32  Identities=31%  Similarity=0.673  Sum_probs=27.4

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +.+|+.++|.|.+.+.+|+ +.|+|+|||+.+.
T Consensus       119 ~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  151 (214)
T 1ow0_A          119 LALNELVTLTCLARGFSPKDVLVRWLQGSQELP  151 (214)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             hccCCceEEEEEEeeeECCCcEEEEEECCEECC
Confidence            5679999999999887775 5999999998863

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.16  E-value=1.4e-06  Score=52.84  Aligned_cols=57  Identities=19%  Similarity=0.316  Sum_probs=38.5

Q ss_pred             ccCCCEEEEEE-cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEECCEE
Q psy7728           4 RYGPRTRLYQF-APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTE   62 (65)
Q Consensus         4 ~~~~~~~L~V~-~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~   62 (65)
                      .++..+.|+|. .++..|.+......  ..+..|+.++|.|.+.+..| +..++|+++|+.
T Consensus       125 ~~~~~t~l~V~~~~~~~P~v~~~~~~--~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~  183 (248)
T 3u2s_H          125 VWGKGTTVTVSSASTKGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  183 (248)
T ss_dssp             EECCCEEEEECSCCCBCCEEEEECCC--------CEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             eeCCCEEEEEcccCCCCCEEEEeCCC--ccccCCCcEEEEEEEeeEECCCeEEEEeECCcc
Confidence            36678899998 56666776533221  13567999999999988777 578999999863

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.16  E-value=2.8e-06  Score=49.84  Aligned_cols=35  Identities=14%  Similarity=0.535  Sum_probs=30.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+.+ .|.+.|+|||+|+.+.
T Consensus        23 ~~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~   57 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAG-NPTPSISWLKNGREFR   57 (241)
T ss_dssp             CEEEEETTSEEEEECCEEC-SSCCEEEEEETTEECC
T ss_pred             cceEEcCCCeEEEEEEecC-CCCceeEEEECCcccC
Confidence            3468899999999999965 6899999999998863

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.15  E-value=4.4e-06  Score=44.84  Aligned_cols=40  Identities=23%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +|.|...+..   .+.+|++++|+|.+.+  ++..+.|||+|+.+
T Consensus         5 kP~i~~~p~~---~v~~G~~VtL~C~~~~--~~~~~~w~k~g~~~   44 (105)
T 2vsd_A            5 QPSLSLHPSQ---GVSLGDTVTLRCHLPR--MAAWVQLWLNGTLR   44 (105)
T ss_dssp             CCEEEEESCS---SCCTTCEEEEEEECCS--SCEEEEEEETTEEE
T ss_pred             CCEEEeCCCC---CcCcCCCEEEEEEcCC--CCcEEEEEECCccc
Confidence            3566554432   5889999999999864  35789999999754

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.15  E-value=6.8e-06  Score=49.56  Aligned_cols=54  Identities=11%  Similarity=0.172  Sum_probs=38.9

Q ss_pred             CCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce-EEEEECCEE
Q psy7728           6 GPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK-IVWYRGNTE   62 (65)
Q Consensus         6 ~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~   62 (65)
                      +..+.|+|.. +...|.+...+.  ...+.+|+.++|.|.+. +.|.+. |+|||+|..
T Consensus       174 s~~~~l~V~~~~~~~P~i~~~~~--~~~v~~G~~v~l~C~~~-g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          174 SDKFTLKVREAIKAIPVVSVPET--SHLLKKGDTFTVVCTIK-DVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             CCCEEEEEECCCCSCCEEECSCS--BCCCCTTCCEEEEEEEE-ESSTTCEEEEEEESSS
T ss_pred             eEEEEEEEEeCCCCCCccccCCC--cceEecCCcEEEEEEEe-cCCcceeEEEecCCCC
Confidence            4568899984 223445544332  23789999999999997 568875 999999865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.15  E-value=3.9e-07  Score=57.04  Aligned_cols=49  Identities=16%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..+|.   +.. .     ...+|+.++|.|.+.+ .|.|.|+|||+|+.+.
T Consensus       240 ~~~~~l~V~~~P~---i~~-~-----~~~~g~~v~l~C~~~g-~P~p~i~W~~~g~~l~  288 (347)
T 2ifg_A          240 EVSVQVNVSFPAS---VQL-H-----TAVEMHHWCIPFSVDG-QPAPSLRWLFNGSVLN  288 (347)
T ss_dssp             CEEECCCCBEEEE---EEE-C-----CCEESSSEEEEEEEEE-ESCCEEEEEETTEECC
T ss_pred             EEEEEEEEcCCCe---eee-c-----cCccCceEEEEEEeee-cCCCcEEEEeCCEECC
Confidence            3345666766664   211 1     3467999999999965 6999999999998874

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.14  E-value=1.1e-06  Score=56.15  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=39.0

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+|+.++|.|.+.+..|.+ .|+|+|++..
T Consensus       104 ~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~  161 (434)
T 1igy_B          104 WGQGTTVTVSSAKTTPPSVYPLAPG--SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  161 (434)
T ss_dssp             CCCCEECEECCSCCBCCCEEEECCC--CCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBC
T ss_pred             cCCceEEEEccCCCCCCeEEEcCCc--cccCCCCcEEEEEEEeeecCCCeEEEEeeCCcC
Confidence            45678999984 3333444322211  1357899999999998776876 9999999864

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=1.4e-06  Score=48.73  Aligned_cols=31  Identities=13%  Similarity=0.469  Sum_probs=26.5

Q ss_pred             eEEeecCCcEEEEEEecCC--CCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNA--KPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~--~P~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.+.+.  .|.|.|+||||.
T Consensus        21 ~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk   53 (118)
T 2edn_A           21 SVSVETGKDAVVVAKVNGKELPDKPTIKWFKGK   53 (118)
T ss_dssp             CCEEETTSCEECCEEEETTTSSSCCCCEEEETT
T ss_pred             CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCC
Confidence            4578999999999999754  489999999984

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.14  E-value=1.9e-06  Score=49.52  Aligned_cols=34  Identities=24%  Similarity=0.711  Sum_probs=29.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. ++|.+.++|||+|+.+.
T Consensus        18 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~   51 (212)
T 2v9r_A           18 DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVE   51 (212)
T ss_dssp             CEEECTTCCEEECCEEE-EESCCEEEEEETTEECC
T ss_pred             ceEEeCCCcEEEEEEcC-CCCCCEEEEEECCEEee
Confidence            46789999999999985 47899999999998763

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.14  E-value=4.7e-06  Score=49.69  Aligned_cols=52  Identities=17%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             cCCCEEEEEEcCCC-----------ccEEEeCCCCCeEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728           5 YGPRTRLYQFAPPS-----------SIEIVGHPSNSKIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~pP~-----------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      ++..+.|+|..+|.           .+.+...+.   ..+.+|+.++|.|.+.+.. |.+.|.|||+
T Consensus        98 ~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           98 FGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGP---SLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             ECCCEEEEEC---------------CCEEEEECC---SEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ECCCEEEEEcCCCCCCcccccccccceeeecCCc---ceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            45678999988764           122322111   2589999999999997643 3578999995

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.14  E-value=4.7e-06  Score=44.99  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=26.9

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-----eEEEEECCEEc
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-----KIVWYRGNTEL   63 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-----~i~W~~~~~~l   63 (65)
                      +|.|...+..   .+.+|+.++|+|.+.. .|..     .+.|||||+.+
T Consensus         8 kP~l~~~p~~---~v~~G~~VtL~C~~~~-~~~~~~~~~~~~w~k~g~~l   53 (108)
T 4hwn_A            8 APILRAVPSA---EPQAGSPMTLSCQTKL-PLQRSAARLLFSFYKDGRIV   53 (108)
T ss_dssp             CCEEEEESCS---SCBTTCCEEEEEEC----------CCEEEEEETTEEE
T ss_pred             CCEEEecCCC---cCCCCCcEEEEEcccC-CCCCcCcceEEEEEECCcCc
Confidence            4566554431   4789999999999853 3443     49999999875

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.14  E-value=8.7e-06  Score=50.73  Aligned_cols=32  Identities=28%  Similarity=0.530  Sum_probs=27.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC--CEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG--NTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~--~~~l   63 (65)
                      ..+.+|+.++|.|.+. ++|.+.|+|||+  |..+
T Consensus        10 ~~~~~G~~v~l~C~~~-g~p~p~v~W~~~~~g~~~   43 (389)
T 2jll_A           10 ETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTF   43 (389)
T ss_dssp             EEEETTSEEEEEEEEE-CSSCCEEEEEETTTTEEE
T ss_pred             eEEeCCCeEEEEEEee-cccCCeEEEEeCCCCcee
Confidence            4678899999999996 589999999999  8765

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.13  E-value=9.3e-06  Score=48.52  Aligned_cols=52  Identities=19%  Similarity=0.393  Sum_probs=35.8

Q ss_pred             cCCCEEEEEEcCC-----------CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEEC
Q psy7728           5 YGPRTRLYQFAPP-----------SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~pP-----------~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~   59 (65)
                      ++..+.|+|..++           ..+.+..  .+..+.+.+|+.++|.|.+.+ .|.+ .+.|||+
T Consensus       116 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~--~p~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~  179 (257)
T 3gkz_A          116 WGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQ--SPAIMSASPGEKVTLTCSASS-SVSSSHLYWYQQ  179 (257)
T ss_dssp             ECCCEEEEEC---------CTTCCCCCCEEC--SCSEEEECTTCCEEEEEEESS-CCCGGGEEEEEE
T ss_pred             EcCCEEEeecCchhhcccccCCCccceEEEc--CCceEEEeCCCcEEEEEEEcc-CccceEEEEEEE
Confidence            5677889998762           1233432  233568899999999999976 4665 9999993

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.12  E-value=2e-06  Score=55.00  Aligned_cols=56  Identities=20%  Similarity=0.340  Sum_probs=39.5

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..++|+|.. .+..|.+.......  .+.+|+.++|.|.+.+..|.+ .|+|+|++..
T Consensus       108 ~~~~~~l~V~~~~~~~P~i~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  165 (444)
T 1igt_B          108 WGQGTTVTVSSAKTTAPSVYPLAPVC--GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  165 (444)
T ss_dssp             EBCCEEEEECSCCCBCCEEEEECCCS--SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             ccCcEEEEecCCCCCCCceeEecccc--cCCCCCcEEEEEEEcceeCCCcEEEEecCCCC
Confidence            55678899985 33344554322111  247899999999998877876 9999999865

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.12  E-value=2.2e-06  Score=49.67  Aligned_cols=34  Identities=15%  Similarity=0.468  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.+|+.++|.|.+.+ .|.+.|+|||+|+.+.
T Consensus        28 ~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~   61 (231)
T 3ojm_B           28 LHAVPAANTVKFRCPAGG-NPMPTMRWLKNGKEFK   61 (231)
T ss_dssp             CEEEETTSCEEEECCEEE-ESCCEEEEEETTEECC
T ss_pred             eEEEccCCCEEEEEeccc-CCCCeEEEEECCcccc
Confidence            457899999999999865 6899999999998863

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.11  E-value=1.6e-05  Score=46.81  Aligned_cols=52  Identities=13%  Similarity=0.261  Sum_probs=36.6

Q ss_pred             cCCCEEEEEEcCCC----ccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728           5 YGPRTRLYQFAPPS----SIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~pP~----~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      ++..+.|+|..++.    ...+...   ....+.+|+.++|.|.+.+..+ .+.|.|||+
T Consensus       102 ~~~~~~l~V~~~~~~~~~~~~~~~~---~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A          102 FGGGTKLEIKGGGSGGGGEVQLQQS---GAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             BCCCEEEEECCCSCCCCCCCEEEEC---CCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ecCCEEEEEecCCCCCCceEEEeCC---CceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            56678999988653    2223221   2357899999999999976532 479999995

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.11  E-value=1.7e-06  Score=51.84  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=38.9

Q ss_pred             cCCCEEEEEE-cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728           5 YGPRTRLYQF-APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~-~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~   62 (65)
                      ++..+.|+|. .++..|.+......  ..+.+|+.++|.|.+.+..|.+ .++|+++|+.
T Consensus       125 ~~~~t~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~  182 (239)
T 3tv3_H          125 WGRGTLVTVSSASTKGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  182 (239)
T ss_dssp             ECCCEEEEECCCCCBCCEEEEECCC--CCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             eCCCcEEeeccCCCcCCEEEEECCC--hhhccCCcEEEEEEEeeEeCCCeEEEEEECCcc
Confidence            5677899997 45666776532211  1356799999999998877755 5899999864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.10  E-value=5.1e-06  Score=49.85  Aligned_cols=51  Identities=22%  Similarity=0.359  Sum_probs=34.8

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.|+|..+|....     ......+.+|+.++|.|.+. ++|.+.++||+++..+
T Consensus        89 ~~~~l~v~~~~~~~~-----~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~  139 (291)
T 2wim_A           89 ATVVLEIYQKLTFRE-----VVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEV  139 (291)
T ss_dssp             EEEEEEEECCCBCCS-----CCCSEEEETTSCEEECCCCB-CSSCCEEEEECC----
T ss_pred             EEEEEEecCCcceEe-----CCCChhhcCCCCEEEEEEEc-cCCCCEEEEEECCccc
Confidence            346777777764321     12235789999999999985 5799999999998765

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.09  E-value=7.7e-06  Score=48.08  Aligned_cols=28  Identities=18%  Similarity=0.548  Sum_probs=24.5

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+|+.++|.|.   +.|.+.|+|+|||+.+.
T Consensus       126 ~~G~~v~L~C~---g~p~p~i~W~k~~~~l~  153 (204)
T 1sy6_A          126 ISGTTVILTCP---QYPGSEILWQHNDKNIG  153 (204)
T ss_dssp             EETTEEEEECS---CCCSSCEEEEETTEEES
T ss_pred             ecCCcEEEEcC---CCCCCceEEEECCEECC
Confidence            38999999997   57999999999998763

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.09  E-value=2.3e-06  Score=51.31  Aligned_cols=54  Identities=22%  Similarity=0.432  Sum_probs=38.0

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l   63 (65)
                      ...+.|.|..+|.....  .+  ....+.+|+.++|.|.+.+..++..++||+ +++.+
T Consensus        78 ~~~~~l~V~~~~~~~~~--~~--~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~  132 (289)
T 3ejj_X           78 STTIHLYVKDPAHSWNL--LA--QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV  132 (289)
T ss_dssp             CEEEEEEECCSSCSEEE--SC--SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEEC
T ss_pred             eeEEEEEEeCCCcceec--cc--ceEEEecCCceEeEEEccCCCcceEEEEEecCCeec
Confidence            45578888887765222  12  356889999999999997644444599987 56654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.09  E-value=2.1e-06  Score=52.81  Aligned_cols=32  Identities=16%  Similarity=0.568  Sum_probs=27.4

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +.+|+.++|.|.+.+.+|++ .|+|||||+++.
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  264 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSR  264 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEE
T ss_pred             cCCCCcEEEEEEEccccCCCcEEEEEECCeEcc
Confidence            67999999999998766665 899999999763

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.08  E-value=5.4e-06  Score=46.98  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=26.8

Q ss_pred             EeecCCcEEEEEEecCC-CCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNA-KPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|.|.+.+. .|...++|||+|+.+.
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~   42 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLK   42 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEE
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEee
Confidence            67899999999998664 2333999999998864

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.08  E-value=1.1e-05  Score=46.26  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=28.8

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      |.|...+.   ..+.+|+.++|.|.+.+  |.+.+.|||+|.
T Consensus         9 P~i~~~p~---~~v~~G~~v~L~C~~~~--~~~~~~W~k~g~   45 (184)
T 2gi7_A            9 PSLQALPS---SLVPLEKPVTLRCQGPP--GVDLYRLEKLSS   45 (184)
T ss_dssp             CEEEEESC---SEEETTCCEEEEEECST--TCSEEEEEETTT
T ss_pred             CeEEeCCC---ccccCCCcEEEEEeCCC--CCCEEEEEECCc
Confidence            45554443   16899999999999854  788999999985

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.08  E-value=7.5e-06  Score=47.24  Aligned_cols=39  Identities=10%  Similarity=0.181  Sum_probs=29.3

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |.+...+.   ..+.+|+.++|.|.+.+ .|. .+.|||+|..+
T Consensus         6 P~i~~~p~---~~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~~   44 (196)
T 2d3v_A            6 ATLWAEPG---SVISRGNSVTIRCQGTL-EAQ-EYRLVKEGSPE   44 (196)
T ss_dssp             CEEEEESC---SEEETTCCEEEEEECCT-TCC-EEEEEETTCSS
T ss_pred             CEEEeCCC---CcccCCCeEEEEEeCCC-CCc-EEEEEECCCCC
Confidence            45554443   26889999999999864 454 99999998754

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.07  E-value=1.4e-06  Score=53.38  Aligned_cols=33  Identities=15%  Similarity=0.588  Sum_probs=28.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+. ++|.+.|+|||+|+.+.
T Consensus       133 ~~v~~g~~v~l~C~~~-g~p~~~v~W~~~~~~~~  165 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAA-GNPTPSISWLKNGREFR  165 (334)
T ss_dssp             EEEETTCCEEEECCCC-CSSCCEEECCBTTBCCC
T ss_pred             EEecCCCcEEEEEEcc-CCCCCeEEEEECCEECc
Confidence            5788999999999985 57999999999998653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.07  E-value=3.7e-06  Score=50.94  Aligned_cols=35  Identities=23%  Similarity=0.599  Sum_probs=30.1

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+. ++|.+.|+|||+|+.+.
T Consensus       230 ~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~  264 (317)
T 2y25_A          230 DVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALA  264 (317)
T ss_dssp             SEEEEETTSBBCEEEEEE-CSSCCEEEEEESSSEEC
T ss_pred             ccEEEEcCCEEEEEEEEe-cCCCCEEEEEECCEeCC
Confidence            346789999999999996 57999999999998763

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.05  E-value=5.4e-06  Score=50.95  Aligned_cols=52  Identities=15%  Similarity=0.380  Sum_probs=35.0

Q ss_pred             cCCCEEEEEEcC-----------CC--ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc------eEEEEEC
Q psy7728           5 YGPRTRLYQFAP-----------PS--SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA------KIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~p-----------P~--~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~------~i~W~~~   59 (65)
                      ++..++|+|..+           |.  .+.+.  ..+..+.+.+|+.++|.|.+.+. |.+      .|.|||+
T Consensus       132 ~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~--~~p~~~~v~~G~~v~L~C~~~~~-~~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          132 WGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMS--QSPSSLAVSAGEKVTMSCKSSQS-LFNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             ECCCEEEEECC----------------CCCEE--CSCSEEEEETTSCEEEEEEESSC-CEETTTTEECEEEEEE
T ss_pred             eCCCcEEEEecCCccccccccCCCCCccceEE--cCCCEEEEcCCCcEEEEEEcCCc-cccccccceeEEEEEE
Confidence            456678888872           11  22232  22345678999999999999664 544      8999996

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.05  E-value=7.1e-06  Score=47.15  Aligned_cols=31  Identities=16%  Similarity=0.310  Sum_probs=26.7

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      -+++.+.|.|.+.+.+|.+.|+|||+|+++.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~   45 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIR   45 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECC
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEcc
Confidence            3678889999998878899999999998864

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.05  E-value=6.1e-06  Score=49.53  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             CCCEEEEEEcCC-CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPP-SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP-~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +..+.|.|...+ ..|.+...+.  ...+.+|+.++|+|.+.+..|+..+.|++++..+
T Consensus       172 s~~~~l~V~~~~~~~p~i~~~~~--~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~  228 (292)
T 4dkd_C          172 SISIRLKVQKVIPGPPALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKL  228 (292)
T ss_dssp             CCCEEEEEECCCCSSCEEEEESS--CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCC
T ss_pred             EEEEEEEEeCCCCCCCeEEccCC--ceeEecCCCEEEEEEecCCCCceEEEEeCCCccc
Confidence            457899998622 2445554333  2345799999999999876666889999998754

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.05  E-value=2.4e-06  Score=49.42  Aligned_cols=28  Identities=18%  Similarity=0.465  Sum_probs=24.8

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+|+.++|.|.+    |.+.|+|||||+++.
T Consensus       119 ~~~G~~v~l~C~~----p~p~i~W~k~g~~i~  146 (186)
T 1jbj_A          119 SRGDGSVLLTCGL----TDKTIKWLKDGSIIS  146 (186)
T ss_dssp             CSSSCEEEEECSS----SCSCEEEEETTEECC
T ss_pred             cCCCCeEEEEeeC----CCCeEEEEECCEECc
Confidence            4499999999987    889999999999874

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.05  E-value=1.5e-06  Score=51.70  Aligned_cols=39  Identities=13%  Similarity=0.012  Sum_probs=29.9

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .|.|...+.   ..+.+|+.++|.|.+.+  |++.+.|||||+.
T Consensus         9 ~P~i~~~p~---~~v~~G~~vtL~C~~~~--~~~~~~W~k~g~~   47 (218)
T 1uct_A            9 MPFISAKSS---PVIPLDGSVKIQCQAIR--EAYLTQLMIIKNS   47 (218)
T ss_dssp             CCCEEESSC---SEEETTCCEEEEECCCT--TCSEEEEEEEETT
T ss_pred             CCEEEecCC---CccCCCCCEEEEEEcCC--CCCEEEEEECCCc
Confidence            445655543   26899999999999854  6889999999754

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.05  E-value=1.2e-05  Score=47.06  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCc---eEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPAA---KIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~---~i~W~~~~   60 (65)
                      +.+.+|++++|.|.+.+. |.+   .|+|||++
T Consensus        14 V~v~~G~~v~L~C~v~~~-~~~~~~~V~W~k~~   45 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPT-MSAETMELKWVSSS   45 (226)
T ss_dssp             EEEETTSCEEEEEEEESC-CCCTTSEEEEEETT
T ss_pred             EEEEcCCcEEEEEEEECC-CCCCceEEEEEECC
Confidence            357889999999998643 333   69999976

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.04  E-value=1.8e-05  Score=45.48  Aligned_cols=39  Identities=13%  Similarity=0.097  Sum_probs=29.7

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |.|...+..   .+.+|+.++|.|.+.+  ++..+.|||+|+.+
T Consensus         5 P~i~~~p~~---~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~   43 (188)
T 1oll_A            5 PFIWAEPHF---MVPKEKQVTICCQGNY--GAVEYQLHFEGSLF   43 (188)
T ss_dssp             CEEEEESCS---EEETTCCEEEEEECCT--TCCEEEEEETTEEE
T ss_pred             CEEEeecCC---cCCCCCCEEEEEecCC--CCCEEEEEECCCcc
Confidence            455554432   6889999999999853  46789999999865

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.03  E-value=6.1e-06  Score=51.40  Aligned_cols=33  Identities=24%  Similarity=0.668  Sum_probs=28.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l   63 (65)
                      .+.+.+|+.++|.|.+. |+|.+.|+||| ||+.+
T Consensus        13 ~~~~~~G~~v~l~C~~~-g~p~p~v~W~k~~g~~~   46 (388)
T 2v5m_A           13 RIDFSNSTGAEIECKAS-GNPMPEIIWIRSDGTAV   46 (388)
T ss_dssp             EEEEETTTCEEEECEEE-EESCCEEEEEETTSCBC
T ss_pred             eEEEEcCccEEEEEECC-CCCCCEEEEEcCCCCcc
Confidence            45688999999999995 57999999999 77765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.03  E-value=2.3e-06  Score=53.38  Aligned_cols=53  Identities=13%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +..+.|.|.++|....    .......+.+|+.++|.|.+..+.|.+.|+|||++.+
T Consensus        90 s~~~~l~v~~~~~~~~----~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~  142 (382)
T 1cs6_A           90 SREASLRFGFLQEFSA----EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFP  142 (382)
T ss_dssp             CCCEEEEEEEECCCCS----SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTT
T ss_pred             ecceEEEeeccccccc----cCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCc
Confidence            4468888887664321    1123457899999999999777789999999999864

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.03  E-value=4e-06  Score=49.32  Aligned_cols=28  Identities=21%  Similarity=0.569  Sum_probs=24.6

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+|+.++|.|.+    |.+.|+|||||+.+.
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~   42 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIG   42 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEE
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECC
Confidence            4689999999987    789999999998863

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.02  E-value=1.2e-05  Score=52.97  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=27.2

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +.+|+.++|+|.+.+++|+ ..|+|+|||+.+.
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~  341 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPT  341 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEecc
Confidence            5679999999999887674 5999999998764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.02  E-value=1.5e-05  Score=54.38  Aligned_cols=54  Identities=13%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.|.|......|.+.....  ...+.+|+.++|.|.+.+ +|.+.|+|+++|+.+.
T Consensus       418 ~~~l~v~~~~~~p~i~~~~~--~~~v~~G~~v~L~C~~~g-~p~p~v~W~~~g~~l~  471 (816)
T 3dmk_A          418 SAELKLGGRFDPPVIRQAFQ--EETMEPGPSVFLKCVAGG-NPTPEISWELDGKKIA  471 (816)
T ss_dssp             CCEEECCCSSCCCEEEEECC--CEEECSSSCEEEEEEEEC-SSCCEEEEEETTEECC
T ss_pred             EEEEEEccccCCCceEecCc--ceEEcCCCCEEEEEEEec-CCCCEEEEEECCEECC
Confidence            45666654333445543222  247889999999999855 8999999999998763

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.02  E-value=3.9e-06  Score=49.00  Aligned_cols=31  Identities=19%  Similarity=0.451  Sum_probs=25.6

Q ss_pred             ecCCcEEEEEEecCCCC---CceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKP---AAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P---~~~i~W~~~~~~l~   64 (65)
                      .+|+.++|.|.+.+..|   ...|+|||+++++.
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~   49 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH   49 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEEC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCcccc
Confidence            68999999999986543   45999999998753

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.01  E-value=5.2e-06  Score=48.44  Aligned_cols=30  Identities=23%  Similarity=0.534  Sum_probs=24.8

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +|..++|.|.+.+..|+ +.|+|+|||+++.
T Consensus       123 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  153 (207)
T 1l6x_A          123 TKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  153 (207)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCcEEEEEEEeCeECCCeEEEEEECCeecc
Confidence            45669999999887776 5999999998764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.01  E-value=5.9e-07  Score=55.32  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=39.1

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEe----cCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLV----KNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~----~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..+|....... .  ....+.+|+.++|.|.+    ..++|.+.|+|||||+.+.
T Consensus       108 ~~~~~l~V~~~~~~~~~~~-~--~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~  167 (339)
T 3o4o_C          108 KMSIELRVFENTDAFLPFI-S--YPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD  167 (339)
T ss_dssp             EEEEEEEEECSCGGGHHHH-C--EEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCC
T ss_pred             EEEEEEEEEcCCCcccccc-c--cceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCC
Confidence            3457888888765321000 0  11367899999999994    3568999999999998763

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.01  E-value=1.4e-07  Score=57.47  Aligned_cols=50  Identities=18%  Similarity=0.206  Sum_probs=33.4

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      +.|+|..+|.   +..... ....+.+|+.++|.|.+.+ +|++ .++|||++..+
T Consensus       204 ~~l~V~~~P~---~~~~~~-~~~~~~~g~~v~l~C~~~g-~P~p~~v~W~k~~~~~  254 (308)
T 4fom_A          204 FILDIQYAPE---VSVTGY-DGNWFVGRKGVNLKCNADA-NPPPFKSVWSRLDGQW  254 (308)
T ss_dssp             EECCCCEEEE---ECCBCC-CSCEETTCCSCEEECCEEE-ESCEEEEECCBSSSCC
T ss_pred             EEEEEecCCe---eEEccc-ceeeeeccccEEEEEEEec-CCCCcEEEEEECCeEC
Confidence            4566666653   221111 1236778999999999965 6766 79999998664

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.00  E-value=5.4e-06  Score=50.02  Aligned_cols=31  Identities=16%  Similarity=0.408  Sum_probs=26.3

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+|+.++|.|.+.+..|+ ..|+|+|||+++.
T Consensus       136 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  167 (239)
T 1i1c_A          136 MTQSQVSITCMVKGFYPPDIYTEWKMNGQPQE  167 (239)
T ss_dssp             GGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             hcCCcEEEEEEEeeeECCCeEEEEEECCEECC
Confidence            357889999999887776 5899999999874

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.00  E-value=8.4e-06  Score=44.12  Aligned_cols=31  Identities=26%  Similarity=0.671  Sum_probs=26.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+..|...|.|||++
T Consensus        16 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~   46 (120)
T 2yz1_A           16 SVSVAAGDSTVLNCTLTSLLPVGPIKWYRGV   46 (120)
T ss_dssp             EEEECTTCCEEECCEESCCCSCCCEEEEESS
T ss_pred             eEEEeCCCCEEEEeEECCCCCCcEEEEEcCC
Confidence            3578999999999999765577899999985

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=97.99  E-value=6.3e-06  Score=45.38  Aligned_cols=31  Identities=26%  Similarity=0.725  Sum_probs=26.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+..|.+.|.|||++
T Consensus        12 ~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~   42 (127)
T 2jju_A           12 SVSVAAGESATLRCAMTSLIPVGPIMWFRGA   42 (127)
T ss_dssp             EEEEETTSCEEECCEESCCCSCCCEEEEECS
T ss_pred             eEEEeCCCCEEEEEEEeCCCCCCEEEEEecC
Confidence            4578999999999999765577899999975

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=97.99  E-value=4e-06  Score=49.48  Aligned_cols=31  Identities=19%  Similarity=0.488  Sum_probs=26.1

Q ss_pred             eecCCcEEEEEEecCCC--CC-ceEEEEECCEEc
Q psy7728          33 IRENQEITLECLVKNAK--PA-AKIVWYRGNTEL   63 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~--P~-~~i~W~~~~~~l   63 (65)
                      +.+|+.++|.|.+.+..  |+ +.|+|||++..+
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~   56 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEV   56 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEE
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccc
Confidence            67899999999998653  44 899999999775

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=97.99  E-value=1.2e-05  Score=46.38  Aligned_cols=39  Identities=18%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      |.|...+.   ..+.+|+.++|.|.+.+ .|. .++|||+|..+
T Consensus         6 P~i~~~p~---~~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~~   44 (198)
T 1ugn_A            6 PTLWAEPG---SVITQGSPVTLRCQGGQ-ETQ-EYRLYREKKTA   44 (198)
T ss_dssp             CEEEEESC---SEEETTCCEEEEEECCT-TCC-CEEEEESSSCC
T ss_pred             CeEeccCC---CcccCCCcEEEEEEecC-CCc-EEEEEECCccc
Confidence            45554443   26889999999999865 454 79999998765

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=97.99  E-value=1.3e-05  Score=42.62  Aligned_cols=30  Identities=17%  Similarity=0.495  Sum_probs=25.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||++
T Consensus        10 ~~~~~~G~~v~L~C~~~~-~~~~~v~W~r~~   39 (108)
T 1jhl_L           10 YLVASPGETITINCRASK-SISKSLAWYQEK   39 (108)
T ss_dssp             EEEECTTSCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             eeEEcCCCCEEEEeEECC-CCCceEEEEEEC
Confidence            357899999999999965 578899999964

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=97.98  E-value=1.3e-05  Score=41.94  Aligned_cols=31  Identities=16%  Similarity=0.396  Sum_probs=26.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||++.
T Consensus        15 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~   45 (108)
T 3m45_A           15 NVTVVEGGTAILTCRVDQ-NDNTSLQWSNPAQ   45 (108)
T ss_dssp             CEEEETTSCEEEEEEESS-CSSCCEEEECTTC
T ss_pred             eeEEEeCCcEEEEeEEcC-CCccEEEEEcCCC
Confidence            368899999999999965 5889999999874

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.98  E-value=3.2e-05  Score=46.35  Aligned_cols=51  Identities=20%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             cCCCEEEEEEc-----------------CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728           5 YGPRTRLYQFA-----------------PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~-----------------pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ++..+.|.|..                 .+..+.+...  +..+.+.+|+.++|.|.+.+.  .+.|.|||+
T Consensus       106 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~--~~~v~W~k~  173 (256)
T 3tf7_C          106 FGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQS--PRNKVTVTGENVTLSCRQTNS--HNYMYWYRQ  173 (256)
T ss_dssp             ECCCEEEEEEC---------------------CCEEES--CSEEEEETTCCEEECEEECSC--CSEEEEEEE
T ss_pred             ECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEec--CCEEEEeCCCcEEEEEEcCCC--ceEEEEEEE
Confidence            55678898886                 2233344432  235678899999999999765  568999993

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=97.98  E-value=3.1e-06  Score=44.86  Aligned_cols=31  Identities=29%  Similarity=0.524  Sum_probs=25.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+.+ .  +.|+|||+++.+
T Consensus        17 ~~~v~~G~~v~l~C~~~~-~--p~v~W~k~~~~~   47 (108)
T 2dm7_A           17 TKEASEGATATLQCELSK-V--APVEWKKGPETL   47 (108)
T ss_dssp             CCEEETTSCEEEEEEBSS-S--CCCEEESSSSBC
T ss_pred             cEEEeCCCcEEEEEEeCC-C--CeeEEEECCEEC
Confidence            357899999999999854 3  689999998765

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=97.98  E-value=1.3e-05  Score=43.16  Aligned_cols=31  Identities=16%  Similarity=0.445  Sum_probs=25.5

Q ss_pred             EEeecCCcEEEEEEecCC-CCCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNA-KPAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~~   61 (65)
                      +.+.+|+.++|.|.+.+. .|.+.|+||+++.
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~   49 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSS   49 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCT
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCc
Confidence            367889999999999752 4668999999876

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.98  E-value=1.6e-06  Score=52.15  Aligned_cols=50  Identities=20%  Similarity=0.352  Sum_probs=36.1

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ...+.|+|..+|......    ...+.+.+|+.++|.|.+.+..+.+.|+||++
T Consensus        78 ~~~~~l~V~~~~~~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~  127 (292)
T 4dkd_C           78 SAAIHLYVKDPARPWNVL----AQEVVVFEDQDALLPCLLTDPVLEAGVSLVRV  127 (292)
T ss_dssp             CEEECCEECCSSCCEEES----CSEEEEETTSCEECCEEESSGGGGSSEEEEEG
T ss_pred             ceEEEEEEcCcccccccc----CCeEEEcCCCcEEEeeeCCCCCcceeEEEEec
Confidence            456778888877543221    22467899999999999976333388999997

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.98  E-value=4.4e-06  Score=53.25  Aligned_cols=32  Identities=13%  Similarity=0.427  Sum_probs=26.8

Q ss_pred             eecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      ..+|+.++|.|.+.+.+| .+.|+|+|||+++.
T Consensus       286 ~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~  318 (376)
T 2aty_A          286 QMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  318 (376)
T ss_pred             HhcCCceEEEEEEEEeECCCcEEEEEECCEECC
Confidence            345899999999988776 57899999998764

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=97.97  E-value=1.8e-05  Score=51.17  Aligned_cols=32  Identities=31%  Similarity=0.673  Sum_probs=27.4

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +.+|+.++|.|.+.+.+|+ +.|+|+|||+++.
T Consensus       362 v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  394 (475)
T 1iga_A          362 LALNELVTLTCLARGFSPKDVLVRWLQGSQELP  394 (475)
T ss_pred             hccCCceEEEEEEeeeECCCCEEEEEECCEECC
Confidence            5789999999999887664 6999999999874

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.96  E-value=5.6e-06  Score=46.71  Aligned_cols=32  Identities=25%  Similarity=0.592  Sum_probs=24.1

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.++|.|.+.+ .|.+.+.||+++..+
T Consensus        12 ~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~   43 (189)
T 2v5t_A           12 QEFKQGEDAEVVCRVSS-SPAPAVSWLYHNEEV   43 (189)
T ss_dssp             EEEETTSCEEECCEEEC-SSCCEEEEEC-----
T ss_pred             EEEeCCCcEEEEEEEcC-CCCCEEEEEECCccc
Confidence            46889999999999964 689999999998765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.95  E-value=2e-06  Score=57.87  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=9.9

Q ss_pred             CCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728           6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus         6 ~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+.|+|..+|.......  ......+.+|+.++|.|.+. ++|++.|+|||||+.+.
T Consensus       317 ~~~~~l~V~~~p~~~~~~~--~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~g~~l~  372 (772)
T 3v2a_R          317 KNSTFVRVHEKPFVAFGSG--MESLVEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLE  372 (772)
T ss_dssp             EEEEEEEEECCCC----------------------------------------------
T ss_pred             eEEEEEEEeCCCeeEeccC--CCCcEEEcCCCcEEEEEEEe-eeCCCeEEEEECCEeCC
Confidence            4467899998885432211  11234688999999999986 48999999999998764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.95  E-value=3.6e-05  Score=50.03  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=39.0

Q ss_pred             CCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce-EEEEECCEE
Q psy7728           6 GPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK-IVWYRGNTE   62 (65)
Q Consensus         6 ~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~   62 (65)
                      +..+.|+|.. +...|.+...+  ....+.+|+.++|.|.+.+ .|.+. |+|||++..
T Consensus       197 s~~~~l~V~~~~~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g-~p~p~~i~W~~~~~~  252 (524)
T 2ec8_A          197 SEKFILKVRPAFKAVPVVSVSK--ASYLLREGEEFTVTCTIKD-VSSSVYSTWKRENSQ  252 (524)
T ss_dssp             CCCEECCEECCCCSCCEEECSC--SEEEEETTSCEEEEEEEEE-SSTTCEEEEEETTCS
T ss_pred             EEEEEEEEEeCCCCCCcEEecC--CcceEEcCCcEEEEEEEec-CCCcEEEEEEeCCCC
Confidence            4478899983 22334555433  3457899999999999974 56665 999999876

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=97.94  E-value=1.2e-05  Score=51.33  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             EeecCCcEEEEEEecCCCC---CceEEEEECCEEccC
Q psy7728          32 EIRENQEITLECLVKNAKP---AAKIVWYRGNTELKL   65 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P---~~~i~W~~~~~~l~~   65 (65)
                      .+..|+.++|+|.+.+++|   +-.++|||||.++.|
T Consensus        13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG   49 (304)
T 3shs_A           13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN   49 (304)
T ss_dssp             SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC
T ss_pred             cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC
Confidence            4788999999999999999   568999999988764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.93  E-value=1.8e-05  Score=46.87  Aligned_cols=29  Identities=7%  Similarity=0.289  Sum_probs=24.2

Q ss_pred             EEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      +.+.+|+.++|.|.+.+.. +.+.|.|||+
T Consensus       141 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F          141 ELVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             EEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             eEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            5789999999999996532 3789999997

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=97.93  E-value=1e-05  Score=49.21  Aligned_cols=32  Identities=19%  Similarity=0.470  Sum_probs=26.2

Q ss_pred             eecCCcEEEEEEecCCC--C-CceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAK--P-AAKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~--P-~~~i~W~~~~~~l~   64 (65)
                      +..|+.++|+|.+.+..  | +..|+|||||+++.
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~   70 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH   70 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEEC
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcccC
Confidence            44699999999999887  5 45899999999863

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.92  E-value=2.5e-05  Score=51.51  Aligned_cols=56  Identities=21%  Similarity=0.525  Sum_probs=38.2

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~   61 (65)
                      ++..++|+|.. ++..|.|......... ..+|+.++|.|.+.++.|.+ .|+|++++.
T Consensus       119 ~~~~~~L~V~~~~~~~P~i~~~~~~~~~-~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~  176 (512)
T 1zvo_C          119 WGQGTTVHVSSAPTKAPDVFPIISGCRH-PKDNSPVVLACLITGYHPTSVTVTWYMGTQ  176 (512)
T ss_pred             ccCceEEEecccCCcCCeEEeccCCccc-ccCCCeEEEEEEEEeeecCceEEEEEcCcc
Confidence            46778999985 4456666522211010 23468999999999887875 999999764

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.92  E-value=2.6e-05  Score=47.09  Aligned_cols=29  Identities=14%  Similarity=0.248  Sum_probs=24.1

Q ss_pred             EEeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      ..+.+|+.++|+|.+.+..| .+.+.|||+
T Consensus       161 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          161 GLVQPGGAMKLSCVTSGFTFGHYWMNWVRQ  190 (268)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGCEEEEEEE
T ss_pred             eEecCCCcEEEEEEecCccccccEEEEEEe
Confidence            47899999999999976543 388999995

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=97.91  E-value=2.6e-05  Score=41.93  Aligned_cols=30  Identities=23%  Similarity=0.634  Sum_probs=25.1

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+.. |.+.+.|||+
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (111)
T 2ywz_A            9 TITKETGESLTIKCVLKDHSCGLSSTTWYRT   39 (111)
T ss_dssp             EEEECTTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             cEEEccCCCEEEEeEECCCCCCCCEEEEEEe
Confidence            35789999999999987643 6789999995

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.91  E-value=6.9e-06  Score=49.52  Aligned_cols=50  Identities=10%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEE-ECCEEc
Q psy7728           7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWY-RGNTEL   63 (65)
Q Consensus         7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~-~~~~~l   63 (65)
                      ..+.|.|..+|... +    ....+.+.+|+.++|.|.+.+  |. +.++|| +||+.+
T Consensus        82 ~~~~l~V~~~~~~~-~----~~~~~~~~~g~~v~l~C~~~~--p~~~~v~W~~~~g~~l  133 (290)
T 2o26_X           82 SSIYVFVRDPAKLF-L----VGLPLFGKEDSDALVRCPLTD--PQVSQYSLIECDGKSL  133 (290)
T ss_dssp             EEEEEEEECSSCCB-C----CCCCEEEETTSCEEECCCBSC--CSCEEEEEEETTSCCC
T ss_pred             EEEEEEEeCCCccc-c----cccceEEecCCeEEEeCcCCC--CCCceEEEEeCCCcCC
Confidence            45788888877643 2    122367889999999999973  77 999995 577665

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.91  E-value=2.2e-05  Score=46.90  Aligned_cols=52  Identities=17%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             cCCCEEEEEEcC------------CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc----eEEEEEC
Q psy7728           5 YGPRTRLYQFAP------------PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA----KIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~p------------P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~----~i~W~~~   59 (65)
                      ++..+.|.|..+            ...+.+...  +..+.+.+|+.++|.|.+.+ .|.+    .|.|||+
T Consensus       107 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A          107 WGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQT--PASLAVSLGQRATISCRASE-NVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             ECCCEEEEECSSSCCCCC---------CCEEEE--CSEEEECTTSCEEEEEEESS-CCEETTEECEEEEEE
T ss_pred             ECCCcEEEEecCCccccccccCCCcccceEECc--CCeEEEeCCCCEEEEEEecC-ccccCCCcEEEEEEE
Confidence            356788888853            112233322  23467899999999999966 5665    9999994

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.89  E-value=3.6e-06  Score=53.84  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=24.7

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..| .++|.|.+.+.+|++ .|+|+|||+++.
T Consensus       360 ~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~  390 (444)
T 1igt_B          360 TKK-QVTLTCMVTDFMPEDIYVEWTNNGKTEL  390 (444)
T ss_dssp             TSS-EEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cCC-eEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence            445 499999998767776 999999998864

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=97.89  E-value=3.2e-06  Score=52.04  Aligned_cols=56  Identities=16%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             CCCEEEEEEcCCC--ccEEEeCCCCCeEEeecCCcEEEEEEec--CCCC-CceEEEEECCEEc
Q psy7728           6 GPRTRLYQFAPPS--SIEIVGHPSNSKIEIRENQEITLECLVK--NAKP-AAKIVWYRGNTEL   63 (65)
Q Consensus         6 ~~~~~L~V~~pP~--~~~i~~~~~~~~~~~~~G~~~~L~C~~~--~~~P-~~~i~W~~~~~~l   63 (65)
                      ...+.|+|..++.  .|.+...  ...+.+.+|+.++|.|.+.  .++| ++.+.|++||+.+
T Consensus       211 ~~~~~l~V~~~~~~~~P~i~~~--~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~  271 (339)
T 3o4o_C          211 TRSIELRIKKKKEETIPVIISP--LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHI  271 (339)
T ss_dssp             EEEEEEEEECCCCCCCCEECCC--SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCS
T ss_pred             EEEEEEEEEcCCCCCCCEEecC--CceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeec
Confidence            3457888886542  3455432  2345688999999999993  4567 8999999998754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.88  E-value=1.8e-05  Score=48.90  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=27.3

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|.|.+.+ .| .+.|+|||+++.+.
T Consensus       139 ~~~~G~~v~L~C~~~g-~p~~~~i~W~k~~~~l~  171 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILY-AKHYNNITWYKNNQELI  171 (329)
T ss_dssp             TSSTTTCEEEECCCCS-CCCCCEEEEEETTEECC
T ss_pred             EEeCCCcEEEEeccCC-CCCCceEEEEECCccCC
Confidence            3678999999998855 68 89999999998873

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.88  E-value=2.2e-05  Score=45.07  Aligned_cols=28  Identities=11%  Similarity=0.255  Sum_probs=22.7

Q ss_pred             EEeecCCcEEEEEEecCCCCC-----ceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKPA-----AKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~-----~~i~W~~~   59 (65)
                      +.+.+|+.++|.|.+.+ .|.     +.|+|||+
T Consensus        12 v~v~~G~~v~L~C~~~~-~p~~~~~~~~v~W~k~   44 (202)
T 3bp6_B           12 YTVDVGSSVSLECDFDR-RECTELEGIRASLQKV   44 (202)
T ss_dssp             EEEETTSCEEEEEEECT-TC---CTTEEEEEEEC
T ss_pred             EEEeCCCcEEEEEEecC-CCCCCccceEEEEEcC
Confidence            46789999999999954 565     89999993

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.87  E-value=5.8e-05  Score=45.66  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +|.|...+..   .+.+|+.++|.|.+.+  ++..+.|||+|+.+
T Consensus         7 kP~i~~~P~~---~v~~G~~VtL~C~~~~--~~~~~~w~k~g~~~   46 (242)
T 1p6f_A            7 KPFIWAEPHF---MVPKEKQVTICCQGNY--GAVEYQLHFEGSLF   46 (242)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEECCT--TCCEEEEEETTEEE
T ss_pred             CCEEEeeCCC---ccCCCCcEEEEEeeCC--CCcEEEEEECCCcc
Confidence            4566654442   6899999999999853  56789999999864

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=97.87  E-value=3.6e-06  Score=47.84  Aligned_cols=35  Identities=14%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      ..+.+.+|+.++|.|....+.|. +.|+|||++..+
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~   51 (201)
T 3s97_C           16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPV   51 (201)
T ss_dssp             CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTC
T ss_pred             ceEEEECCCCEEEeccccccCCCceEEEEEECCcee
Confidence            34688999999999993356788 999999998654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.87  E-value=1.2e-05  Score=48.94  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=29.1

Q ss_pred             EEeecCCcEEEEEEec-----CCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVK-----NAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~-----~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.++|.|.+.     .++|.+.|+|||+|+++
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l  150 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL  150 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEEC
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEEC
Confidence            3678999999999983     67899999999999987

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=97.87  E-value=1.3e-05  Score=49.18  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             EeecCCcEEEEEEecC------CCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKN------AKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~------~~P~~~i~W~~~~~~l~   64 (65)
                      .+..|++++|.|.+.+      +.|.+.|.|+|||+.+.
T Consensus        15 ~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~   53 (303)
T 1i1r_A           15 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP   53 (303)
T ss_dssp             EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECC
T ss_pred             eEeCCCCEEEEEEECCccccccCCChhheEEEECCEECC
Confidence            5789999999999974      46889999999999873

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=97.85  E-value=1.8e-05  Score=45.86  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=28.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|...++.|.+.|.|+|+|..+
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i   40 (193)
T 2if7_A            7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSL   40 (193)
T ss_dssp             EEEEETTSCEEECCCCCCCSCCCEEEEEETTEEE
T ss_pred             EEEEEecCeEEEeccCCCcccccEEEEEECCEEE
Confidence            4578899999999998765677899999998654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=97.84  E-value=3e-05  Score=42.23  Aligned_cols=31  Identities=23%  Similarity=0.574  Sum_probs=26.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      .+.+.+|++++|.|.+. +.|.+.|.||+++.
T Consensus        10 ~~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~   40 (124)
T 3rbg_A           10 TITVEEGQTLTLKCVTS-LRKNSSLQWLTPSG   40 (124)
T ss_dssp             EEEEETTSCEEEEEECC-CCTTCEEEEECTTS
T ss_pred             cEEEcCCCCEEEEeEEe-ccCCCEEEEECCCC
Confidence            45789999999999996 56889999998654

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=97.82  E-value=4.1e-05  Score=40.87  Aligned_cols=30  Identities=13%  Similarity=0.462  Sum_probs=25.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+ .|.+.|.|||+.
T Consensus        12 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~   41 (109)
T 2q20_A           12 SLSASVGDRVTITCQASQ-DISNYLNWYQQK   41 (109)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             EEEecCCCcEEEEEeecc-CCCCcEEEEEEC
Confidence            357899999999999865 467899999964

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.82  E-value=1.6e-05  Score=48.94  Aligned_cols=28  Identities=29%  Similarity=0.615  Sum_probs=24.1

Q ss_pred             CcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728          37 QEITLECLVKNAKP-AAKIVWYRGNTELK   64 (65)
Q Consensus        37 ~~~~L~C~~~~~~P-~~~i~W~~~~~~l~   64 (65)
                      +.++|+|.+.+..| .+.|+|||||+.+.
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~   53 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMD   53 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcc
Confidence            69999999988766 47999999999864

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.81  E-value=3.5e-05  Score=44.47  Aligned_cols=29  Identities=14%  Similarity=0.548  Sum_probs=24.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|+|||+
T Consensus        10 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~   38 (213)
T 3d9a_L           10 TLSVTPGNSVSLSCRASQ-SIGNNLHWYQQ   38 (213)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             cEEEeCCCcEEEEEECCC-CCCCCEEEEEe
Confidence            357899999999999855 67889999985

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=97.81  E-value=4.1e-06  Score=49.97  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=26.8

Q ss_pred             EeecCCcEEEEEEecCCCCC--ceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPA--AKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l   63 (65)
                      .+.+|+.++|.|.+.+..|.  ..|+|||+|+.+
T Consensus        24 ~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~   57 (231)
T 2w59_A           24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGN   57 (231)
T ss_dssp             HHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSC
T ss_pred             hcccCCceEEEEEEeCccCCCCeEEEEEcCCeec
Confidence            45789999999999877784  499999998765

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.81  E-value=1.2e-05  Score=51.29  Aligned_cols=31  Identities=13%  Similarity=0.470  Sum_probs=25.3

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+|..++|.|.+.+.+|+ +.|+|+|||+++.
T Consensus       349 ~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  380 (434)
T 1igy_B          349 MAKDKVSLTCMITDFFPEDITVEWQSDGQAPE  380 (434)
T ss_dssp             SSSSEEEEEEEEEEEBCSCEEEEEEETTSCCS
T ss_pred             hcCCcEEEEEEEEeeECCCeEEEEEECCEecC
Confidence            457789999999876665 5899999998764

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=2.3e-05  Score=43.32  Aligned_cols=31  Identities=26%  Similarity=0.725  Sum_probs=26.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+..|...|.|||++
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~   47 (136)
T 2d9c_A           17 SVSVAAGESATLRCAMTSLIPVGPIMWFRGA   47 (136)
T ss_dssp             EEEEETTSCEEECCEESCCCSCCCCEEEETT
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCceEEEEeec
Confidence            3578999999999999765567789999985

>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...

Probab=97.80  E-value=2.5e-05  Score=45.98  Aligned_cols=31  Identities=16%  Similarity=0.500  Sum_probs=26.3

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..|..++|.|.+.+..|+ ..|+|+|||+++.
T Consensus        98 ~~~~~~~L~C~a~gFyP~~i~v~W~k~g~~~~  129 (181)
T 3c5j_A           98 ELREPNVLICFIDKFTPPVVNVTWLRNGKPVT  129 (181)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             hcCCCCeEEEEEeEEECCCCEEEEEECCEECC
Confidence            457789999999998887 4899999999873

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.78  E-value=1.9e-05  Score=45.08  Aligned_cols=32  Identities=19%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|+|||++..
T Consensus        10 ~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~   41 (212)
T 1f97_A           10 DVQVPENESIKLTCTYSG-FSSPRVEWKFVQGS   41 (212)
T ss_dssp             EEEEETTCCEEEECEEES-CSSEEEEEEEEETT
T ss_pred             CeEEEcCCCEEEEeEeCC-CCCcEEEEEECCCc
Confidence            357889999999999974 69999999998743

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=97.78  E-value=4.6e-05  Score=40.57  Aligned_cols=29  Identities=14%  Similarity=0.611  Sum_probs=24.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+ .|.+.+.|||+
T Consensus        10 ~~~~~~G~~v~L~C~~~~-~~~~~v~W~r~   38 (107)
T 1i8k_A           10 SLSVATGEKVTIRCMTST-DIDDDMNWYQQ   38 (107)
T ss_dssp             EEECCTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             eEEecCCCCEEEEEEECC-CCCCcEEEEEE
Confidence            357899999999999865 46788999995

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.77  E-value=3.1e-05  Score=45.55  Aligned_cols=48  Identities=23%  Similarity=0.408  Sum_probs=33.0

Q ss_pred             cCCCEEEEEEcC---CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728           5 YGPRTRLYQFAP---PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~p---P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      ++..++|+|...   +..|.+.         +..+ .++|.|.+.+..|. +.|+|+++ +.+
T Consensus       108 ~~~~t~L~V~~~~~~~~~P~v~---------~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l  159 (207)
T 1ypz_E          108 FGQGTQVTVEPKSQPPAKPSVF---------IMKN-GTNVACLVKDFYPKEVTISLRSS-KKI  159 (207)
T ss_dssp             ECCCEEEEEECCCCCCCCCEEE---------EEEE-TTEEEEEEEEESSSCCEEEEECS-SEE
T ss_pred             ecCccEEEEccCCCCCCCCeEE---------EeCC-CCeEEEEEeeEeCCCeEEEEecC-Ccc
Confidence            466789999863   2334432         1122 26999999888776 79999998 554

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.77  E-value=1.7e-05  Score=46.35  Aligned_cols=31  Identities=13%  Similarity=0.434  Sum_probs=25.4

Q ss_pred             eecCCcEEEEEEecCCC--C-CceEEEEECCEEc
Q psy7728          33 IRENQEITLECLVKNAK--P-AAKIVWYRGNTEL   63 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~--P-~~~i~W~~~~~~l   63 (65)
                      +.+|+.++|.|.+.+..  | ...|+|||++..+
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~   48 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEV   48 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEE
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccc
Confidence            67899999999998653  3 3599999999765

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.77  E-value=5.9e-05  Score=46.16  Aligned_cols=39  Identities=13%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +|.|...+.   ..+.+|++++|.|.+.  .+.+.+.|||+|+.
T Consensus         7 kP~i~~~P~---~~V~~G~~VtL~C~~~--~~~~~~~W~k~g~~   45 (257)
T 1b6u_A            7 KPSLLAHPG---PLVKSEETVILQCWSD--VRFQHFLLHREGKF   45 (257)
T ss_dssp             CCEECCBSC---SEEESSCCEEEEEEES--SCCSEEEEEEESTT
T ss_pred             CCEEEEcCC---CEecCCCCEEEEEecC--CCCcEEEEEECCCC
Confidence            456655443   3678999999999985  35789999999863

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=97.76  E-value=2.4e-05  Score=47.51  Aligned_cols=31  Identities=23%  Similarity=0.499  Sum_probs=26.6

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .+|+.++|.|.+.+.+|++ .|+|+|||+++.
T Consensus       143 ~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~  174 (240)
T 4acp_A          143 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  174 (240)
T ss_dssp             GGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             hcCCceEEEEEEeEEeCCCcEEEEEECCEECC
Confidence            3488999999999878875 899999999864

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=97.75  E-value=4.7e-05  Score=40.59  Aligned_cols=29  Identities=17%  Similarity=0.542  Sum_probs=24.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      +.+.+|++++|.|...+ .|.+.+.|||+.
T Consensus        11 ~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~   39 (108)
T 1qfw_M           11 MSMSVGERVTLSCKASE-TVDSFVSWYQQK   39 (108)
T ss_dssp             EECCTTCCEEEEEEESS-CCCSCEEEEEEC
T ss_pred             EEEcCCCCEEEEeeeCC-CCCcEEEEEEEC
Confidence            57899999999999865 467789999953

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=97.75  E-value=2.1e-05  Score=50.54  Aligned_cols=31  Identities=19%  Similarity=0.470  Sum_probs=25.8

Q ss_pred             eecCCcEEEEEEecCCCCCc---eEEEEECCEEc
Q psy7728          33 IRENQEITLECLVKNAKPAA---KIVWYRGNTEL   63 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~---~i~W~~~~~~l   63 (65)
                      +.+|+.++|.|.+.+..|++   .|+|||||+++
T Consensus       261 ~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~  294 (457)
T 1hzh_H          261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV  294 (457)
T ss_dssp             HCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEE
T ss_pred             cccCCceEEEEEEEcccCCCCceEEEEEeCCccc
Confidence            56799999999998654543   99999999876

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.75  E-value=3.5e-05  Score=41.17  Aligned_cols=30  Identities=17%  Similarity=0.539  Sum_probs=24.5

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+.. |.+.+.|||+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (108)
T 2coq_A            9 IATKETGESLTINCVLRDTACALDSTNWYRT   39 (108)
T ss_dssp             EEEECTTCCEEEEEEECCSSEEEEEEEEEEE
T ss_pred             eEEEcCCCCEEEEeEeCCCcCCCCEEEEEEc
Confidence            35789999999999986543 4678999996

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=97.75  E-value=2.3e-05  Score=44.50  Aligned_cols=31  Identities=16%  Similarity=0.392  Sum_probs=27.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||++.
T Consensus         4 ~v~~~~G~~v~L~C~~~-~~~~~~i~W~~~~~   34 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTAS-QKKSIQFHWKNSNQ   34 (184)
T ss_dssp             EEEEETTSCEEECCBCS-SSSCCCEEEEETTC
T ss_pred             cEEEeCCCCEEEEEEEc-CCCceEEEEEeCCc
Confidence            35789999999999986 67899999999985

>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*

Probab=97.75  E-value=3.7e-05  Score=45.98  Aligned_cols=31  Identities=32%  Similarity=0.532  Sum_probs=26.3

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..|..++|.|.+.+..|+. .|+|+|||+++.
T Consensus       101 ~~~~~~tL~C~a~gFyP~~i~v~W~kng~~~~  132 (197)
T 1uvq_A          101 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVT  132 (197)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEEC
T ss_pred             ccCCccEEEEEEEeEcCCCCEEEEEECCEEcc
Confidence            3467899999999988874 899999999873

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=97.74  E-value=1.4e-05  Score=48.25  Aligned_cols=31  Identities=13%  Similarity=0.456  Sum_probs=25.8

Q ss_pred             eecCCcEEEEEEecCCC--CCc-eEEEEECCEEc
Q psy7728          33 IRENQEITLECLVKNAK--PAA-KIVWYRGNTEL   63 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~--P~~-~i~W~~~~~~l   63 (65)
                      +.+|+.++|.|.+.+..  |.+ .|+|||++..+
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~   62 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEV   62 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEE
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccc
Confidence            56899999999998654  765 99999998654

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=97.74  E-value=6.5e-05  Score=41.04  Aligned_cols=29  Identities=21%  Similarity=0.526  Sum_probs=24.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+ .|.+.+.|||+
T Consensus        12 ~v~v~~G~~vtL~C~~~~-~~~~~v~W~r~   40 (119)
T 2e27_L           12 SLSASLGGKVTITCKANQ-DIKKKIAWYQH   40 (119)
T ss_dssp             EEEEETTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeCC-CCCceEEEEEE
Confidence            357899999999999865 46789999995

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=97.73  E-value=5.7e-05  Score=43.57  Aligned_cols=29  Identities=14%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+. |.+.|.|||+
T Consensus        10 ~~~v~~G~~v~L~C~~~~~-~~~~v~W~k~   38 (213)
T 3r06_A           10 SLPASLGDRVTINCQASQD-ISNYLNWYQQ   38 (213)
T ss_dssp             EEEECTTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             EEEecCCCcEEEEEEeCCC-cCceEEEEEE
Confidence            3578999999999999764 8999999993

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.73  E-value=1.5e-05  Score=46.00  Aligned_cols=30  Identities=17%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...+|+.++|.|.+.+  |+ .|+|||||+.+.
T Consensus        10 v~~~G~~v~L~C~~~~--~~-~i~W~k~g~~l~   39 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS--DE-NLKWEKNGQELP   39 (186)
T ss_dssp             EEEETTEEEEECSSCC--CT-TCEEEETTEEEC
T ss_pred             EEeCCcEEEEEEeCCC--CC-ceEEEECCEECC
Confidence            3478999999999864  33 499999999874

>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein membrane-associated; MHC, immunoglobulin domain, immune system, antigen presentat glycosylation; HET: NAG FUC; 2.90A {Homo sapiens}

Probab=97.73  E-value=6e-05  Score=49.20  Aligned_cols=33  Identities=12%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEccC
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELKL   65 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~~   65 (65)
                      ...|...+|+|.+.+..|+ ..|+|+|||+++.|
T Consensus        15 ~~~~~~~tL~C~v~~FyP~~i~v~W~~ng~~~~~   48 (392)
T 3s6c_A           15 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK   48 (392)
T ss_dssp             CCSSSCEEEEEEEEEEBSSCCEEEEEETTEECSS
T ss_pred             cccCCcEEEEEEEeeEECCCcEEEEEECCeECCC
Confidence            4557788999999999887 68999999998753

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.73  E-value=2.7e-05  Score=46.09  Aligned_cols=31  Identities=13%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             EEeecCCcEEEEEEec--CCCCCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVK--NAKPAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~--~~~P~~~i~W~~~~~   61 (65)
                      +.+..|+.++|+|...  .+.|.+.|+|||+|.
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~   35 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGP   35 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEET
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCC
Confidence            4688999999999632  457999999999863

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.73  E-value=5.7e-05  Score=43.65  Aligned_cols=29  Identities=14%  Similarity=0.604  Sum_probs=24.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||+
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~   37 (210)
T 1lk3_L            9 ALTVSPGEKLTISCKASE-SVTSRMHWYQQ   37 (210)
T ss_dssp             EEEECTTSCEEEEEEESS-CCTTCEEEEEE
T ss_pred             cEEEcCCCCEEEEeeCCC-ccCCCEEEEEE
Confidence            457899999999999865 57788999994

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.72  E-value=3.8e-05  Score=45.05  Aligned_cols=31  Identities=19%  Similarity=0.530  Sum_probs=26.0

Q ss_pred             EEeecCCcEEEEEEecC--CCCCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKN--AKPAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~--~~P~~~i~W~~~~~   61 (65)
                      +.+.+|+.++|.|.+.+  ..|.+.|+|||++.
T Consensus        12 v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~   44 (250)
T 2fbo_J           12 VEVHAGGTVELPCSYQLANDTQPPVISWLKGAS   44 (250)
T ss_dssp             EEECTTSCEEECCEEEECSCCSCCEEEEEEEEE
T ss_pred             eEEecCCeEEEEEEeEcCCCCCceEEEEEeCCC
Confidence            46889999999999864  26889999999874

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=97.72  E-value=7e-05  Score=40.91  Aligned_cols=29  Identities=14%  Similarity=0.476  Sum_probs=24.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|...+ .|.+.|.|||+
T Consensus        10 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~   38 (120)
T 1mqk_L           10 SLSASVGETVTITCRASE-NIYSYLAWYQQ   38 (120)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             eEEEcCCCcEEEEEEeCC-CCCceEEEEEE
Confidence            357899999999999865 46789999995

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=97.72  E-value=2e-05  Score=47.96  Aligned_cols=54  Identities=20%  Similarity=0.345  Sum_probs=38.2

Q ss_pred             cCCCEEEEEE-cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEECCEE
Q psy7728           5 YGPRTRLYQF-APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTE   62 (65)
Q Consensus         5 ~~~~~~L~V~-~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~   62 (65)
                      ++..+.|+|. .++..|.+.......  ...+|+.++|.|.+.+..| ++.++|  |++.
T Consensus       153 ~g~~t~l~V~~~~~~~P~v~~~~~~~--~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~  208 (267)
T 3u1s_H          153 WGHGTAVTVSSASTKGPSVFPLAPSS--KSTSGGTAALGCLVKDYFPEPVTVSW--NSGA  208 (267)
T ss_dssp             ECCCEEEEECCCCCBCCEEEEECCCG--GGEETTEEEEEEEEEEEBSSCCEEEE--GGGT
T ss_pred             ecCCeEEEecCCCCCCCEEEEecCCc--ccCCCCcEEEEEEEeEEECCCeEEEE--CCcc
Confidence            5667899998 566667775322211  2357999999999988777 678999  5543

>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex, histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A 2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C 3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A* 1f3j_A*

Probab=97.71  E-value=4.8e-05  Score=45.48  Aligned_cols=31  Identities=32%  Similarity=0.548  Sum_probs=26.3

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..|..++|.|.+.+..|+. .|+|+|||+++.
T Consensus       102 ~~~~~~tL~C~a~gFyP~~i~v~W~kng~~~~  133 (199)
T 1iak_A          102 LLGQPNTLICFVDNIFPPVINITWLRNSKSVT  133 (199)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEECC
T ss_pred             ccCCCcEEEEEEeeEeCCCcEEEEEECCEEcc
Confidence            3467899999999988874 899999999873

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=97.70  E-value=6e-05  Score=42.48  Aligned_cols=32  Identities=25%  Similarity=0.441  Sum_probs=28.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      +...+..|+.++|.|.+.+..|.|+|+|.|-+
T Consensus        22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~   53 (122)
T 1xau_A           22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHN   53 (122)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEEC
T ss_pred             ccEEEecCCeEEEEeEecCCCCCCcEEEEecC
Confidence            44589999999999999998999999999954

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=97.70  E-value=3.4e-05  Score=45.68  Aligned_cols=53  Identities=17%  Similarity=0.314  Sum_probs=36.5

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEECCE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNT   61 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~   61 (65)
                      ++..+.|+|.. ++..|.+......  ..+.+|+.++|.|.+.+..| +..++|  ++.
T Consensus       113 ~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~  167 (230)
T 3n9g_H          113 WGQGTLVTVSSASTKGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPEPVTVSW--NSG  167 (230)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECCC--CCCCTTCEEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred             cCCCEEEEEEecCCCCCEEEecCCC--ccccCCCCEEEEEEEEeEECCCEEEEE--CCc
Confidence            56778999974 4455566532211  13568999999999988777 567999  554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.70  E-value=4.8e-05  Score=43.20  Aligned_cols=32  Identities=16%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCc---eEEEEECCE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAA---KIVWYRGNT   61 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~---~i~W~~~~~   61 (65)
                      ..+.+..|+.++|.|.+.+ .|.+   .|+|||++.
T Consensus         7 ~~vtv~~G~~v~L~C~v~~-~~~~~~~~V~W~k~~~   41 (218)
T 4frw_A            7 DVVTVVLGQDAKLPCFYRG-DSGEQVGQVAWARVDA   41 (218)
T ss_dssp             SEEEEETTSCEEECCEECC-CTTCEEEEEEEEEECS
T ss_pred             CeEEEEcCCCEEEEEEEEc-CCCCCccEEEEEECCC
Confidence            3467899999999999865 4543   599999874

>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface glycoprotein CD1B; MHC, immunoglobulin domain, immune system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo sapiens}

Probab=97.68  E-value=5.6e-05  Score=49.47  Aligned_cols=33  Identities=12%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEccC
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELKL   65 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~~   65 (65)
                      ...|...+|+|.+.+..|+ ..|+|+|||+++.|
T Consensus        18 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~~~~   51 (397)
T 3ov6_A           18 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK   51 (397)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSS
T ss_pred             cccCCcEEEEEEEeeEECCCCEEEEEECCeeccc
Confidence            4567788999999999987 68999999998753

>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B 1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B* 2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B 1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...

Probab=97.68  E-value=3.1e-05  Score=45.53  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=24.6

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .|..++|.|.+.+..|+. .|+|+|||+++.
T Consensus       109 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~  139 (190)
T 3c5j_B          109 LQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK  139 (190)
T ss_dssp             --CCCEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cCCceEEEEEEeeEECCceEEEEEECCeEcC
Confidence            467789999999988875 899999999873

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=97.68  E-value=4.1e-05  Score=51.19  Aligned_cols=32  Identities=13%  Similarity=0.430  Sum_probs=27.6

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ...|+.++|.|.+.+.+|+ ..|+|+|||+++.
T Consensus       461 ~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~  493 (551)
T 1ntl_A          461 QMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  493 (551)
T ss_pred             hccCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            4568899999999998887 6899999999864

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=97.67  E-value=7.2e-05  Score=39.47  Aligned_cols=30  Identities=17%  Similarity=0.380  Sum_probs=24.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCc----eEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPAA----KIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~----~i~W~~~~   60 (65)
                      +.+.+|++++|.|....+.+.+    .+.|||++
T Consensus        10 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   43 (118)
T 3udw_C           10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG   43 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTCCCEEEEEEEEETT
T ss_pred             EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcC
Confidence            4688999999999996555544    49999985

>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B* 1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D 2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...

Probab=97.67  E-value=3.6e-05  Score=45.60  Aligned_cols=29  Identities=31%  Similarity=0.586  Sum_probs=22.7

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      .|..++|.|.+.+..|+. .|+|+|||+++
T Consensus       107 ~~~~~~L~C~v~gFyP~~i~v~W~~~g~~~  136 (198)
T 1uvq_B          107 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEE  136 (198)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCCCcEEEEEEeeEeCCceEEEEEECCEec
Confidence            467789999999988875 89999999986

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=97.67  E-value=0.00011  Score=39.32  Aligned_cols=29  Identities=21%  Similarity=0.589  Sum_probs=23.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|...+. + +.+.|||+.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~-~-~~v~W~r~~   38 (113)
T 1h5b_A           10 ALSLHEGTDSALRCNFTTT-M-RSVQWFRQN   38 (113)
T ss_dssp             EEEEETTCCEEEEEEESSC-C-SEEEEEEEC
T ss_pred             EEEEecCCcEEEEEEECCC-C-ceEEEEEEC
Confidence            3578999999999998653 3 689999853

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.66  E-value=3.9e-05  Score=43.79  Aligned_cols=30  Identities=17%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCc---eEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNAKPAA---KIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~---~i~W~~~~~   61 (65)
                      +.+..|++++|.|.+.+. |.+   .|+|||++.
T Consensus        11 V~~~~G~~v~L~C~~~~~-~~~~~~~V~W~k~~~   43 (225)
T 4fmk_A           11 VRGRLGGTVELPCHLLPP-TTERVSQVTWQRLDG   43 (225)
T ss_dssp             EEEETTSCEEECCEECSS-CCCEEEEEEEECTTS
T ss_pred             EEEecCCCEEEEEEEECC-CCCceeEEEEEECCC
Confidence            357889999999998654 443   489999864

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.65  E-value=0.00011  Score=43.69  Aligned_cols=30  Identities=17%  Similarity=0.519  Sum_probs=25.5

Q ss_pred             eEEeecCCcEEEEEEec--CCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVK--NAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~--~~~P~~~i~W~~~   59 (65)
                      ...+.+|+.++|.|.+.  .+.|.+.|+||++
T Consensus       127 ~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A          127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             EEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             ccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            35788999999999983  5679999999994

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=97.65  E-value=9.5e-05  Score=39.60  Aligned_cols=30  Identities=10%  Similarity=0.467  Sum_probs=24.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+ .+.+.+.|||..
T Consensus        13 ~~~~~~G~~v~L~C~~~~-~~~~~v~W~r~~   42 (111)
T 1i3g_L           13 FMSTSVGDRVSITCKASQ-DVGTAVAWYQQK   42 (111)
T ss_dssp             EEECCTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             EEEEcCCCCEEEEEEeCC-CCCCCEEEEEEC
Confidence            357899999999999865 467889999964

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.64  E-value=0.00011  Score=39.63  Aligned_cols=30  Identities=20%  Similarity=0.665  Sum_probs=24.1

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+.. +...+.|||+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (113)
T 1sq2_N            9 SVTKETGESLTINCVLRDASYALGSTCWYRK   39 (113)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEE
T ss_pred             cEEEecCCCEEEEEEECCCcCCCCEEEEEEe
Confidence            35789999999999986542 3578999996

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=97.63  E-value=5.7e-05  Score=40.32  Aligned_cols=31  Identities=13%  Similarity=0.443  Sum_probs=23.8

Q ss_pred             eEEeecCCcEEEEEE-ecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECL-VKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~-~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|. ..+..+...+.|||.+
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~   40 (109)
T 1pew_A            9 SVSESPGKTVTISCTRSSGNIASNYVQWYQQR   40 (109)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEC-
T ss_pred             CEEEcCCCCEEEEEEeCCCCCCCccEEEEEEC
Confidence            457899999999999 6543224789999976

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=97.62  E-value=3.7e-05  Score=44.12  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=26.2

Q ss_pred             eEEeecCCcEEEEEEec-CCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVK-NAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~-~~~P~~~i~W~~~~~~l   63 (65)
                      .+...+|+.++|.|... ...|.+.|+|||++..+
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i   39 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLV   39 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCcee
Confidence            35678999999999432 23577899999999754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.62  E-value=1.3e-05  Score=51.85  Aligned_cols=34  Identities=18%  Similarity=0.527  Sum_probs=29.3

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+.+|+.++|.|.+. |.|.|.|+|||+|..+
T Consensus       393 ~~~~v~~G~~v~l~C~~~-g~P~p~i~W~~~~~~~  426 (477)
T 2id5_A          393 QQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHL  426 (477)
T ss_dssp             EEEEEETTCCEEECCCEE-EESCCEEEEECTTSCB
T ss_pred             ccEEEeCCCeEEEEEecc-ccCCCEEEEEECCccc
Confidence            456899999999999986 4799999999998654

>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=97.62  E-value=6.9e-05  Score=47.48  Aligned_cols=30  Identities=27%  Similarity=0.546  Sum_probs=26.3

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .+..++|.|.+.+..|+. .++|+|||+++.
T Consensus       197 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~  227 (315)
T 1cd1_A          197 AHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQ  227 (315)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEETTEECT
T ss_pred             CCCceEEEEEEeeeeCCCcEEEEEEccccCC
Confidence            456799999999999987 899999999864

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=97.61  E-value=2.1e-05  Score=48.90  Aligned_cols=31  Identities=23%  Similarity=0.493  Sum_probs=24.9

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+|..++|.|.+.+.+|+ +.|+|+|||+.+.
T Consensus       255 ~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  286 (344)
T 1za6_B          255 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  286 (344)
T ss_dssp             GGSSSEEEEEEEEEEBSSCCEEEEESSSSCCC
T ss_pred             ccCCcEEEEEEEeeEECCCeEEEEEECCeECC
Confidence            356679999999876664 7999999998763

>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_B 1k8i_B*

Probab=97.61  E-value=6.2e-05  Score=44.96  Aligned_cols=30  Identities=23%  Similarity=0.499  Sum_probs=26.2

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      ..|..++|.|.+.+..|+ ..|+|+|||+++
T Consensus       108 ~~~~~~~L~C~v~gFyP~~i~v~W~~~g~~~  138 (211)
T 2bc4_B          108 NTREPVMLACYVWGFYPAEVTITWRKNGKLV  138 (211)
T ss_dssp             SCSSSEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             cCCCceEEEEEEeeeECCCcEEEEEECCEEC
Confidence            357789999999998887 589999999987

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=97.60  E-value=0.0002  Score=39.41  Aligned_cols=31  Identities=26%  Similarity=0.508  Sum_probs=22.8

Q ss_pred             EEeecCCcEEEEEEecCCC--CCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNAK--PAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~--P~~~i~W~~~~~   61 (65)
                      +.+..|++++|.|......  ....|.|||++.
T Consensus        16 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~   48 (139)
T 1pko_A           16 IRALVGDEAELPCRISPGKNATGMEVGWYRSPF   48 (139)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--
T ss_pred             EEEEeCCCEEEeeEccCCCCCCceEEEEEECCC
Confidence            4678899999999986432  236899999874

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.59  E-value=2.5e-05  Score=44.53  Aligned_cols=31  Identities=19%  Similarity=0.485  Sum_probs=26.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +.+.+|+.++|.|.+.+ .|.+.++|||++..
T Consensus        14 ~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~   44 (209)
T 1nbq_A           14 VRIPENNPVKLSCAYSG-FSSPRVEWKFDQGD   44 (209)
T ss_dssp             CCEETTCCCEEECEEES-CSSEEEEEEEEETT
T ss_pred             eEEEcCCCEEEEEEEeC-CCCcEEEEEEcCCc
Confidence            46789999999999975 59999999998643

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=97.59  E-value=0.00012  Score=40.33  Aligned_cols=31  Identities=23%  Similarity=0.633  Sum_probs=24.7

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+.. +...+.|||..
T Consensus         9 ~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~   40 (121)
T 2i24_N            9 RITKETGESLTINCVVRDSRCVLSTGYWYRKP   40 (121)
T ss_dssp             EEEEETTCCEEEEEEECSCCCCEEEEEEEEEC
T ss_pred             EEEEecCCcEEEEeEccCCCCCCCEEEEEEeC
Confidence            46789999999999986543 45789999953

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=97.59  E-value=0.00011  Score=42.95  Aligned_cols=27  Identities=11%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+|+.++|.|.+.+ .|.+.|+|+++
T Consensus        12 ~~~~G~~v~L~C~~~g-~P~p~i~W~~~   38 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTG-CESPFFSWRTQ   38 (202)
T ss_dssp             EEETTSCEEEEEEEES-CSSCEEEEEET
T ss_pred             EEcCCCcEEEEEeecC-CCCCeEEEECC
Confidence            4568999999999964 78999999994

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=97.59  E-value=0.00017  Score=38.65  Aligned_cols=31  Identities=23%  Similarity=0.512  Sum_probs=25.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+..+...+.|||..
T Consensus         7 ~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~   37 (115)
T 2atp_B            7 SLLVQTNHTAKMSCEVKSISKLTSIYWLRER   37 (115)
T ss_dssp             EEEECTTSCEEEEEECCSSCCSSEEEEEEEE
T ss_pred             CEEEcCCCcEEEEEEecCCCCcccEEEEEeC
Confidence            4578999999999998654467789999964

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.58  E-value=0.00012  Score=43.28  Aligned_cols=29  Identities=14%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||+
T Consensus        13 ~~~v~~G~~v~L~C~~~~-~~~~~i~W~k~   41 (250)
T 3esu_F           13 SLSASLGDRVTISCRASQ-DIRNYLNWYQQ   41 (250)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             EEEeeCCCcEEEEEEecc-cCCceEEEEEE
Confidence            357889999999999965 67889999995

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=97.58  E-value=0.00014  Score=38.83  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|..........+.|||+.
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~   40 (113)
T 1zox_A           10 EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGV   40 (113)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTSCEEEEESS
T ss_pred             EEEEeCCCcEEEEeECCCCcccceEEEEeCC
Confidence            4578999999999998654444569999974

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.58  E-value=0.00012  Score=43.43  Aligned_cols=29  Identities=10%  Similarity=0.360  Sum_probs=24.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||+
T Consensus        10 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~   38 (242)
T 2znx_A           10 TLSVTPGNSVSLSCRASQ-SIGNNLHXYQQ   38 (242)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             eEEEcCCCcEEEEEEeCC-CCCceEEEEEe
Confidence            357899999999999854 67899999995

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.57  E-value=0.00012  Score=43.45  Aligned_cols=30  Identities=10%  Similarity=0.282  Sum_probs=24.7

Q ss_pred             eEEeecCCcEEEEEEecCCCC----CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP----AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P----~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+..|    .+.|.|||+
T Consensus        47 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   80 (254)
T 2c1o_A           47 TLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ   80 (254)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred             eEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence            468999999999999976533    389999984

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=97.57  E-value=6.1e-05  Score=45.28  Aligned_cols=50  Identities=18%  Similarity=0.331  Sum_probs=32.9

Q ss_pred             cCCCEEEEEEc-CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEE
Q psy7728           5 YGPRTRLYQFA-PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVW   56 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W   56 (65)
                      ++..+.|+|.. ++..|.|......  ..+.+|+.++|+|.+.+..| +..++|
T Consensus       139 ~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~~~~p~~~~v~W  190 (256)
T 3sob_H          139 WGQGTLVTVSSASTKGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPEPVTVSW  190 (256)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECCC-------TTEEEEEEEEEEEBSSCCEEEE
T ss_pred             ECCCEEEEEecCCCCCCEEEEECCC--cccccCCcEEEEEEEEEEECCCeEEEE
Confidence            66778999984 4445566532221  14578999999999988777 568999

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.57  E-value=6.4e-05  Score=43.40  Aligned_cols=30  Identities=13%  Similarity=0.326  Sum_probs=24.0

Q ss_pred             eEEeecCCcEEEEEEecCCCC--CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP--AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P--~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+..+  .+.|.|||+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~   40 (212)
T 1q0x_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (212)
T ss_dssp             EEEECTTCCEEEEEEESSSCCCGGGCCEEEEE
T ss_pred             eEeecCCCCEEEEEEecccccCCCCeEEEEEe
Confidence            357899999999999965432  478999996

>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_A 1k8i_A*

Probab=97.57  E-value=6.8e-05  Score=45.04  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=26.8

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ...|...+|.|.+.+..|+ ..|+|+|||+++.
T Consensus       111 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~  143 (211)
T 2bc4_A          111 LEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVE  143 (211)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cccCCcceEEEEEeeEeCCCCEEEEEECCEEcC
Confidence            3446789999999999987 6799999999863

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=97.56  E-value=6.8e-05  Score=39.92  Aligned_cols=31  Identities=10%  Similarity=0.281  Sum_probs=24.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|......+...+.|||+.
T Consensus         5 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~   35 (110)
T 2q87_A            5 TVAGPVGGSLSVQCPYEKEHRTLNKYWCRPP   35 (110)
T ss_dssp             EEEECTTSCEEEEEECCGGGTTSEEEEESCC
T ss_pred             EEEEeCCCcEEEEeEecCCcCCceEEEEecC
Confidence            3578999999999998654445789999964

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=97.56  E-value=7.8e-05  Score=40.10  Aligned_cols=30  Identities=20%  Similarity=0.488  Sum_probs=24.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|......+...+.|||.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~   38 (116)
T 1tvd_A            9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRI   38 (116)
T ss_dssp             CEEEETTCCEEECCEEECCSSSCCEEEEEE
T ss_pred             cEEEecCCeEEEEeEeEcCCCCcEEEEEEe
Confidence            357899999999999875446678999995

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.55  E-value=0.00015  Score=42.19  Aligned_cols=29  Identities=14%  Similarity=0.531  Sum_probs=25.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||+
T Consensus        33 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~   61 (237)
T 3sob_L           33 SLSASVGDRVTITCRASQ-DVSTAVAWYQQ   61 (237)
T ss_dssp             EEEEETTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             eEEEeCCCcEEEEEecCC-CCCceEEEEEE
Confidence            468899999999999965 48999999994

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=97.55  E-value=0.00011  Score=39.33  Aligned_cols=30  Identities=17%  Similarity=0.489  Sum_probs=24.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|.|...+. +...+.|||.
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~-~~~~v~W~rq   37 (112)
T 2z35_A            8 GQVALSEEDFLTIHCNYSAS-GYPALFWYVQ   37 (112)
T ss_dssp             SEEEEETTCCEEECCEEECS-SCCEEEEEEE
T ss_pred             CcEEEcCCCCEEEEEEECCC-CCCeEEEEEE
Confidence            34678999999999998654 6788999995

>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand swapping; 2.00A {Homo sapiens} PDB: 3i85_A

Probab=97.55  E-value=0.00014  Score=39.59  Aligned_cols=33  Identities=21%  Similarity=0.404  Sum_probs=27.6

Q ss_pred             EeecCCcEEEEEEecCC-CCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNA-KPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~~~l~   64 (65)
                      .+..|+.++|+|....+ -|.....|+|||+.|.
T Consensus        18 ~~~~gs~v~LtC~l~~s~~~~~~~~W~kng~~L~   51 (98)
T 3i84_A           18 VEDLGSKILLTCSLDDSATEVTGHRWLKGGVVLK   51 (98)
T ss_dssp             EEEETTEEEEEEEECCC-CCEEEEEEEETTEEEE
T ss_pred             cEeCCCeEEEEEcCCCCCCCccCCEEeECCEECc
Confidence            45779999999999877 5667789999999874

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=97.54  E-value=0.00011  Score=39.21  Aligned_cols=30  Identities=17%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             eEEeecCCcEEEEEEecCCC---CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK---PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~---P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|...+..   ..+.+.|||+
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~   42 (111)
T 1j05_L           10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             EEECCTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             EEEEeCCCCEEEEeecCCCcccCCCceEEEEEe
Confidence            35789999999999986542   1578999996

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=97.54  E-value=9.3e-05  Score=39.74  Aligned_cols=30  Identities=13%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             eEEeecCCcEEEEEEecCCCC-----CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP-----AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P-----~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|...+...     .+.+.|||.
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~   44 (114)
T 1eeq_A           10 SLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQ   44 (114)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             eEEEcCCCeEEEEEEcCCCccccccCCccEEEEEE
Confidence            357899999999999865432     368999995

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.54  E-value=0.00014  Score=49.20  Aligned_cols=33  Identities=30%  Similarity=0.547  Sum_probs=29.6

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+++.+.|... |.|.|.|+|||++++|.
T Consensus       492 ~~v~~G~~~~~~~~v~-g~P~P~v~W~k~~~el~  524 (573)
T 3uto_A          492 TEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELK  524 (573)
T ss_dssp             EEECTTSCEEEEEEEE-CSSCCEEEEEETTEECC
T ss_pred             cEEeCCCcEEEEEEEE-ccCCCeEEEEECCEEcc
Confidence            5789999999999996 47999999999999874

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.54  E-value=4.9e-05  Score=47.31  Aligned_cols=31  Identities=16%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|+|||++.
T Consensus         3 ~v~~~~G~~v~L~C~~~-~~p~~~v~W~k~~~   33 (363)
T 1wio_A            3 VVLGKKGDTVELTCTAS-QKKSIQFHWKNSNQ   33 (363)
T ss_dssp             EEEEETTSCEEECCCCT-TCSSCCEEEEETTC
T ss_pred             eEEEeCCCeEEEEEEec-CCCceEEEEEeCCc
Confidence            35789999999999985 68999999999985

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.54  E-value=0.00013  Score=41.96  Aligned_cols=32  Identities=16%  Similarity=0.520  Sum_probs=26.2

Q ss_pred             eEEeecCCcEEEEEEecCC------CCCceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNA------KPAAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~------~P~~~i~W~~~~~   61 (65)
                      .+.+.+|+.++|.|.....      .|.+.|.|||++.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~   46 (214)
T 2zg1_A            9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGE   46 (214)
T ss_dssp             EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTC
T ss_pred             EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCC
Confidence            4578999999999998753      2678999999864

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=97.53  E-value=0.00033  Score=37.49  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|.|...+..   .+..|++|+|.|++..  ....+.|||+|.
T Consensus         9 kPsL~a~P~~---vv~~G~~VtL~C~~~~--~~~~f~l~k~g~   46 (106)
T 3kgr_A            9 RPSISAEPGT---VIPLGSHVTFVCRGPV--GVQTFRLERESR   46 (106)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEEECT--TCCEEEEEEGGG
T ss_pred             CCEEEEeCCC---ccCCCCeEEEEEEccC--CCcEEEEEECCC
Confidence            4667655542   6789999999999854  356899999975

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.53  E-value=0.00013  Score=44.14  Aligned_cols=30  Identities=13%  Similarity=0.522  Sum_probs=25.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||++
T Consensus        21 ~~~v~~G~~v~L~C~~~~-~p~~~i~W~r~~   50 (276)
T 3auv_A           21 SLSASVGDRVTITCRASQ-DVSTAVAWYQQK   50 (276)
T ss_dssp             EEECCTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             eEEEcCCCCEEEEeEcCC-CCCCcEEEEEEC
Confidence            457899999999999964 588999999964

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=97.51  E-value=0.00016  Score=40.26  Aligned_cols=28  Identities=11%  Similarity=0.498  Sum_probs=24.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|.|.+.+.   +.+.|||+
T Consensus        25 ~~~~v~~G~~v~L~C~~~~~---~~v~W~r~   52 (133)
T 3khq_A           25 RFAAKKRSSMVKFHCYTNHS---GALTWFRK   52 (133)
T ss_dssp             SEEEECTTCCEEEEEEESSS---SCEEEEEE
T ss_pred             ceEEEeCCCeEEEEEEeCCC---CEEEEEEe
Confidence            34678999999999999764   78999997

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=97.51  E-value=0.0003  Score=39.12  Aligned_cols=30  Identities=20%  Similarity=0.571  Sum_probs=24.9

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+.. +...+.|||.
T Consensus         9 ~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq   39 (126)
T 3moq_A            9 TATKETGESLTINCVLRDASFELKDTGWYRT   39 (126)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeecCccCCceEEEEEe
Confidence            46789999999999987643 6678999994

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=97.50  E-value=5.8e-05  Score=45.30  Aligned_cols=52  Identities=29%  Similarity=0.418  Sum_probs=35.0

Q ss_pred             CCEEEEEEcC-CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728           7 PRTRLYQFAP-PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus         7 ~~~~L~V~~p-P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      ..+.+.|++. |..+.+........+.+.+|+.++|.|.+.  .|.+.++|++++
T Consensus        80 ~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~~v~w~~~~  132 (289)
T 3mjg_X           80 ERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT--DPQLVVTLHEKK  132 (289)
T ss_dssp             CCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS--CTTSCEEEEESS
T ss_pred             cEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC--CCCceEEEEeCC
Confidence            4567777775 544433211111125789999999999996  578899999974

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=97.50  E-value=9.7e-05  Score=39.30  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=24.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|......+...+.|||+.
T Consensus         6 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~   36 (116)
T 2or8_A            6 EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQ   36 (116)
T ss_dssp             EEEEETTSCEEECCBCCCTTCCCCEEEEESC
T ss_pred             eEEEEeCCcEEEEEEeeCCCCCcEEEEEEEC
Confidence            3578999999999997654456679999975

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=97.50  E-value=0.00021  Score=38.27  Aligned_cols=30  Identities=10%  Similarity=0.369  Sum_probs=23.9

Q ss_pred             eEEeecCCcEEEEEEecCCCC----CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP----AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P----~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|...+...    ...+.|||.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq   43 (113)
T 1dlf_L           10 SLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQ   43 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             EEEEcCCCCEEEEEEccccccccCCCceEEEEEE
Confidence            457899999999999865431    478999985

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=97.49  E-value=9.8e-05  Score=42.79  Aligned_cols=31  Identities=16%  Similarity=0.428  Sum_probs=24.3

Q ss_pred             eEEeecCCcEEEEEEecCCCC-CceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKP-AAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.+.++.| .+.|.|||++
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~   40 (216)
T 2xzc_L            9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQL   40 (216)
T ss_dssp             EEEECTTCCEEEEEECCTTTGGGSCCEEEEEC
T ss_pred             cEEecCCCeEEEEEEeecCCCCCCeEEEEEeC
Confidence            357899999999999545443 6899999953

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=97.48  E-value=0.00012  Score=48.26  Aligned_cols=49  Identities=24%  Similarity=0.540  Sum_probs=34.0

Q ss_pred             CEEEEEEcCCCccEEEeCCCCCeEEeecCC-cEEEEEEecCCCCC--ceEEE-EECC
Q psy7728           8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQ-EITLECLVKNAKPA--AKIVW-YRGN   60 (65)
Q Consensus         8 ~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~-~~~L~C~~~~~~P~--~~i~W-~~~~   60 (65)
                      .++|+|..+|.. .+.  +.. ...+..|+ .++|+|.+.+..|.  +.|+| +||+
T Consensus       283 ~v~L~V~~pP~V-~v~--p~~-~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~~rdg  335 (401)
T 3f8u_B          283 TLELAVYKPPKV-SLM--PAT-LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG  335 (401)
T ss_dssp             EEEEEEEBCCEE-EEE--SSS-CCCCCTTCCCCCEEEEEEEEBSSTTCEEEEEEESS
T ss_pred             EEEEeeccCCeE-eec--cCc-ceeecCCCccEEEEEEecCCcCCCCcEEEEEecCC
Confidence            478889887743 232  221 01135676 79999999998888  89999 5876

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=97.48  E-value=0.0001  Score=39.18  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=24.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|....+.+.+.+.|||+
T Consensus        12 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~   41 (110)
T 2ptt_A           12 DINAYTGSNVTLKIHKDPLGPYRRITWLHT   41 (110)
T ss_dssp             SEEEETTSCEEECSCSSCCCSCSEEEEEES
T ss_pred             CEEEecCCcEEEeCCccCCCCcCEEEEEec
Confidence            357899999999999744567789999994

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.48  E-value=0.00015  Score=42.09  Aligned_cols=29  Identities=7%  Similarity=0.241  Sum_probs=24.1

Q ss_pred             EEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      +.+.+|+.++|.|.+.+.. +.+.|.|||+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~   39 (219)
T 1c1e_H           10 ELKKPGETVKISCKASGYMFTNYGMNWVKQ   39 (219)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             eEecCCCcEEEEEEEeCcccccceEEEEEe
Confidence            4688999999999997542 4789999997

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.48  E-value=0.00038  Score=39.73  Aligned_cols=29  Identities=24%  Similarity=0.502  Sum_probs=24.7

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      .+.+|+.++|.|.. .+.|.+.|+|||++.
T Consensus        10 ~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~   38 (208)
T 3r4d_A           10 QVAEDNNVLLLVHN-LPLALGAFAWYKGNT   38 (208)
T ss_dssp             EEETTCCEEEEEEC-CCSSCSEEEEEESSC
T ss_pred             eeecCCcEEEEEeC-CCCCceEEEeccCCC
Confidence            68899999999996 457889999999853

>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}

Probab=97.48  E-value=0.00013  Score=48.49  Aligned_cols=32  Identities=16%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEccC
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELKL   65 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~~   65 (65)
                      ..+...+|+|.+.+..|+. .|+|+|||+++.+
T Consensus        42 ~~~~~~tL~C~v~gFyP~~I~v~W~~ng~~~~~   74 (443)
T 3nwm_A           42 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPK   74 (443)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSC
T ss_pred             cCCCCEEEEEEEcCeECCceEEEEEECCEECCC
Confidence            4467789999999999986 8999999998753

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.60  E-value=1.7e-05  Score=47.01  Aligned_cols=52  Identities=10%  Similarity=0.061  Sum_probs=36.7

Q ss_pred             ccCCCEEEEEEcC--CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728           4 RYGPRTRLYQFAP--PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus         4 ~~~~~~~L~V~~p--P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .++..++|+|...  |..|.|.....       ..+.++|.|.+.+..|.++|.|+++...
T Consensus        97 ~fg~gT~L~V~~~~~~~~P~V~~~~~-------~~~~vtL~C~~~gf~P~p~v~~~~~~~~  150 (185)
T 3c6l_A           97 FFGDGTQLVVKPNIQNPEPAVYQLKD-------PRSQDSTLCLFTDFDSQINVPKTMESGT  150 (185)
Confidence            3567788999854  33455543222       1227899999999999999999877654

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.47  E-value=0.00017  Score=38.83  Aligned_cols=31  Identities=19%  Similarity=0.639  Sum_probs=24.8

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|.|...+..+...+.|||.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq   38 (116)
T 1fo0_A            8 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQ   38 (116)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEE
T ss_pred             CcEEEecCCcEEEEeEecCCCCCeEEEEEEe
Confidence            3467899999999999865435568999995

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.46  E-value=0.00048  Score=46.31  Aligned_cols=33  Identities=15%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             EEeecCCcEEEEEEecCC-CCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNA-KPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~~~l   63 (65)
                      +.+.+|+.++|.|.+.+. +|.+.++||+++..+
T Consensus       234 ~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~  267 (772)
T 3v2a_R          234 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH  267 (772)
T ss_dssp             EEEETTCCEEEEEEEEECTTCCCEEEEECC----
T ss_pred             eEEecCCcEEEEEEEecCCCCceeEEEecCCccC
Confidence            578999999999999754 577899999998763

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.46  E-value=0.00015  Score=42.54  Aligned_cols=29  Identities=17%  Similarity=0.453  Sum_probs=24.4

Q ss_pred             eEEeecCCcEEEEEEecCCCC----CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP----AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P----~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|    .+.|.|||+
T Consensus        10 ~~~v~~G~~v~L~C~~~~-~~~~~~~~~i~W~k~   42 (240)
T 1moe_A           10 SLAVSLGQRATMSCRAGE-SVDIFGVGFLHWYQQ   42 (240)
T ss_dssp             EEEECTTSCEEEEEEESS-CCEETTEECEEEEEE
T ss_pred             eEEecCCCCEEEEEeCCC-ccccCCCceEEEEEE
Confidence            357899999999999965 45    789999995

>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*

Probab=97.46  E-value=0.00011  Score=45.96  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=26.1

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEccC
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELKL   65 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~~   65 (65)
                      .+..++|.|.+.+..|+ ..|+|+|||+++.|
T Consensus       198 ~~~~~~L~C~a~gFyP~~I~v~W~~~g~~~~~  229 (283)
T 1onq_A          198 GPGHLQLVCHVSGFYPKPVWVMWMRGEQEQQG  229 (283)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             CCCceeEEEEEEeEECCceEEEEEECCeecCC
Confidence            35678999999998886 58999999998753

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.46  E-value=6.3e-05  Score=43.42  Aligned_cols=29  Identities=10%  Similarity=0.414  Sum_probs=24.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+ .+.|.+.|.|||+
T Consensus         8 ~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~   36 (212)
T 1nfd_E            8 SASVTVGETVKITCSG-DQLPKNFAYWFQQ   36 (212)
T ss_dssp             EEEEETTSCCCEEEEE-TTGGGSCCEEEEE
T ss_pred             eEEEeCCCcEEEEEec-CCCCCCeEEEEEE
Confidence            3578999999999997 4567788999995

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=97.45  E-value=6.9e-05  Score=46.61  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=26.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .+.+..|++++|.|.+.+..|.+.|+|++++..
T Consensus        15 ~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~   47 (325)
T 1n26_A           15 VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPA   47 (325)
T ss_dssp             EEEECTTCCEEEECTTSCTTCCSEEEEEEECSS
T ss_pred             cEECCCCCcEEEEeCCCCCCCCceEEEEECCcc
Confidence            345579999999999876556899999998754

>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune, disulfide bond, glycoprotein, immune respo membrane, MHC II, transmembrane, immune system; HET: NAG NDG; 3.25A {Homo sapiens}

Probab=97.45  E-value=0.00015  Score=42.81  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .|...+|+|.+.+..|+ ..++|+|||+++.
T Consensus        99 ~~~~~~L~C~v~gFyP~~i~v~W~~ng~~~~  129 (181)
T 3lqz_A           99 LGQPNTLICHIDKFFPPVLNVTWLCNGELVT  129 (181)
T ss_dssp             TTCCEEEEEEEEEEBSCCCEEEEEETTEECC
T ss_pred             cCCCeEEEEEEeeeECCCCEEEEEECCEECc
Confidence            36778999999999886 5899999999873

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.44  E-value=0.00048  Score=41.36  Aligned_cols=48  Identities=21%  Similarity=0.398  Sum_probs=33.1

Q ss_pred             cCCCEEEEEEc---CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728           5 YGPRTRLYQFA---PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus         5 ~~~~~~L~V~~---pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      ++..++|+|..   .+..|.+..        ...  ..+|.|.+.+..|.+ .|+|++| +++
T Consensus       109 ~g~gt~L~V~~~~~~~~~P~v~~--------~~~--~~~L~C~~~g~~P~~i~v~W~~~-~~~  160 (229)
T 1hxm_A          109 FGKGTRVTVEPRSQPHTKPSVFV--------MKN--GTNVACLVKEFYPKDIRINLVSS-KKI  160 (229)
T ss_dssp             EBCCEEEEEECCSCCCBCCEEEE--------EEE--TTEEEEEEESCBSSCCEEEEECS-SEE
T ss_pred             cCccEEEEEeccCCCCcCCcEEE--------cCC--CCeEEEEEEEEeCCCEEEEEecC-CEE
Confidence            56678999985   333444432        111  248999999988875 8999999 654

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=97.44  E-value=0.00019  Score=38.98  Aligned_cols=32  Identities=16%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             EEeecCCcEEEEEEecCC-CCCceEEEEECCEE
Q psy7728          31 IEIRENQEITLECLVKNA-KPAAKIVWYRGNTE   62 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~~~   62 (65)
                      +.+..|+.++|.|...+. .+...|.|||++..
T Consensus        13 v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~   45 (117)
T 3q0h_A           13 ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQL   45 (117)
T ss_dssp             EEEETTCCEEECEEEESCCCEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEEEecCCCCCEEEEEEEeCCEE
Confidence            578999999999998763 33457999998754

>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU, immunoglobulin fold, MBP, immune system; 2.15A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=97.44  E-value=0.00014  Score=44.46  Aligned_cols=31  Identities=32%  Similarity=0.533  Sum_probs=26.2

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..|...+|.|.+.+..|+ ..|+|+|||+++.
T Consensus       132 ~~~~~~tL~C~~~gFyP~~i~v~W~kng~~~~  163 (236)
T 2p24_A          132 LLGQPNTLICFVDNIFPPVINITWLRNSKSVA  163 (236)
T ss_dssp             CTTCCEEEEEEEEEECSSCCEEEEEETTEEEC
T ss_pred             ccCCcceEEEEEEEEcCCCeEEEEEECCEEcC
Confidence            356779999999998887 5899999999873

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=97.43  E-value=0.00018  Score=41.49  Aligned_cols=29  Identities=17%  Similarity=0.457  Sum_probs=24.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      .+.+.+|+.++|.|.+.+..|.+.|.|||
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k   37 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQ   37 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEE
Confidence            35789999999999996543889999999

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.43  E-value=0.00022  Score=41.75  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=24.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|. . +.|.+.|.|||+
T Consensus         9 ~~~v~~G~~v~L~C~-~-~~~~~~i~W~k~   36 (238)
T 2p1y_A            9 NKVAVTGGKVTLSCN-Q-TNNHNNMYWYRQ   36 (238)
T ss_dssp             EEEEETTCCEEEEEE-E-CSCCSEEEEEEE
T ss_pred             ceEEeCCCEEEEEee-c-CCCCccEEEEEE
Confidence            357899999999999 3 468899999995

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.43  E-value=7.5e-05  Score=43.62  Aligned_cols=30  Identities=17%  Similarity=0.410  Sum_probs=24.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCc-eEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAA-KIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+..|.+ .|+|||+
T Consensus        28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~   58 (234)
T 2j6e_L           28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQ   58 (234)
T ss_dssp             CCCBCTTCEEEEEEECCTTTTTTSCCEEEEE
T ss_pred             cEEeeCCCcEEEEEEecCCCCCCCeEEEEEe
Confidence            34689999999999997655545 7999996

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=97.42  E-value=0.00015  Score=39.22  Aligned_cols=29  Identities=17%  Similarity=0.345  Sum_probs=24.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +.+.+|++++|.|....+.+...+.|||.
T Consensus        10 v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq   38 (114)
T 2hp4_A           10 RTWNLGETVELKCQVLLSNPTSGASWLFQ   38 (114)
T ss_dssp             CCCCTTCCEEEEEEECCSSCCSCEEEEEE
T ss_pred             EEEcCCCCEEEEEEeecCCCCceEEEEEE
Confidence            46889999999999876555678999984

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=97.42  E-value=0.00054  Score=38.11  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=25.1

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|.|....+.....+.|||.
T Consensus        17 ~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq   47 (134)
T 3bik_B           17 AWLTVSEGANATFTCSLSNWSEDLMLNWNRL   47 (134)
T ss_dssp             SEEEEETTSCEEEEEEESSCCTTCEEEEEEE
T ss_pred             CeEEEeCCCCEEEEEEeCCCCCCcEEEEEEc
Confidence            3568999999999999875433578999995

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.42  E-value=0.00025  Score=41.91  Aligned_cols=29  Identities=10%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             eEEeecCCcEEEEEEecCCCC-----CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP-----AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P-----~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|     .+.|.|||+
T Consensus        10 ~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~~~   43 (247)
T 1svz_A           10 YLPVSLGDQASISCRSSQ-TIVHNNGNTYLEWYLQ   43 (247)
T ss_dssp             EEEECTTCCEEEEEEESS-CCBCTTSCBCEEEEEE
T ss_pred             eEEecCCCCEEEEEeCCC-cccccCCCceEEEEEE
Confidence            357899999999999965 45     689999994

>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous ligand, phosphatidylcholine, MHC, antigen presentation, immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A* 1gzp_A* 1uqs_A* 3l9r_A*

Probab=97.42  E-value=0.00012  Score=45.89  Aligned_cols=30  Identities=27%  Similarity=0.557  Sum_probs=25.7

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .+..++|+|.+.+..|+. .|+|+|||+++.
T Consensus       198 ~~~~~~L~C~a~gFyP~~I~v~W~~~g~~~~  228 (286)
T 2h26_A          198 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQ  228 (286)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECT
T ss_pred             CCCcceEEEEEEEEECCceEEEEEECCeEcc
Confidence            356789999999998875 799999999864

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=97.41  E-value=0.00034  Score=37.99  Aligned_cols=30  Identities=23%  Similarity=0.606  Sum_probs=24.4

Q ss_pred             EEeecCCcEEEEEEec--CCCCCceEEEEECC
Q psy7728          31 IEIRENQEITLECLVK--NAKPAAKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~--~~~P~~~i~W~~~~   60 (65)
                      +.+.+|+.++|.|...  .+.+.+.|.|||++
T Consensus        14 v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~   45 (135)
T 1xt5_A           14 VEVHAGGTVELPCSYQLANDTQPPVISWLKGA   45 (135)
T ss_dssp             EEEETTSCEEECCEEEEETCCSCCEEEEEEES
T ss_pred             EEEeCCCCEEEeeEeecCCCCCccEEEEEeeC
Confidence            4678999999999864  23578899999975

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.41  E-value=0.00027  Score=42.05  Aligned_cols=31  Identities=10%  Similarity=0.353  Sum_probs=25.3

Q ss_pred             CeEEeecCCcEEEEEEecCCCC-----CceEEEEECC
Q psy7728          29 SKIEIRENQEITLECLVKNAKP-----AAKIVWYRGN   60 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P-----~~~i~W~~~~   60 (65)
                      ..+.+.+|+.++|.|.+.+ .|     .+.|.|||++
T Consensus        42 ~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~k~~   77 (252)
T 3bkj_L           42 LSLPVNLGEQASISCRSSQ-SIVHSNGHTYLEWYLQR   77 (252)
T ss_dssp             SEEEECTTSCEEEEEEESS-CCBCTTSCBCEEEEEEC
T ss_pred             ceEEEeCCCcEEEEEEcCC-CccccCCCCcEEEEEEC
Confidence            3467899999999999865 45     5899999964

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=97.41  E-value=0.00047  Score=37.24  Aligned_cols=30  Identities=20%  Similarity=0.360  Sum_probs=24.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|....+.....+.|||.
T Consensus         8 ~~~v~~G~~vtL~C~~~~~~~~~~v~Wyrq   37 (117)
T 3bp6_A            8 WLTVSEGANATFTCSLSNWSEDLMLNWNRL   37 (117)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEEE
T ss_pred             cEEEeCCCCEEEEeEeecCCCCCEEEEEEe
Confidence            467899999999999875433578999995

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.40  E-value=0.00044  Score=42.10  Aligned_cols=52  Identities=15%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             cCCCEEEEEEc-CCC-----------ccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728           5 YGPRTRLYQFA-PPS-----------SIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus         5 ~~~~~~L~V~~-pP~-----------~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      ++..+.|.|.. ++.           .+.+.  ..+. +.+.+|++++|.|.+.+..+ .+.+.|||.
T Consensus       114 ~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~--~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  178 (280)
T 3fku_X          114 WGQGTLVTVSSGGGGSGGGGSGGGGIQPGLT--QPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQ  178 (280)
T ss_dssp             ECCCCEEEECC--------------CCCSBB--CCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEE
T ss_pred             ECCCEEEEEcCCCCccCCCCCCceEeeeEEE--eCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEE
Confidence            56678898877 211           12222  2222 68899999999999976444 489999983

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.40  E-value=0.0002  Score=42.56  Aligned_cols=29  Identities=17%  Similarity=0.467  Sum_probs=24.7

Q ss_pred             EEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      +.+.+|+.++|.|.+.+.. |.+.+.|||+
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   41 (256)
T 3ux9_B           12 VSGAPGQRVTISCSGSSSNIGSNYVSWYQQ   41 (256)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCCEEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCCCceEEEEEE
Confidence            5789999999999997643 7889999995

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=97.39  E-value=9.9e-05  Score=42.76  Aligned_cols=30  Identities=13%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             eEEeecCCcEEEEEEecCCCC-CceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKP-AAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P-~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.+.+ .| .+.++|||++
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~~v~W~~~~   39 (231)
T 2pet_A            9 LVEVMRGKSVILDCTPTG-THDHYMLEWFLTD   39 (231)
T ss_dssp             EEEEETTCCEEECCCCBS-CCSEEEEEEEEEC
T ss_pred             cEEEEcCCCEEEecccCC-CCCceEEEEEEeC
Confidence            457899999999999865 46 4899999865

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.38  E-value=0.00028  Score=40.56  Aligned_cols=28  Identities=18%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      .+.+.+|+.++|.|.+. +.|.+.|.|||
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~v~W~k   36 (213)
T 3mj8_L            9 LVSVALGQKATITCSGD-KLSDVYVHWYQ   36 (213)
T ss_dssp             EEEEETTSCEEEEEECS-STTTSCEEEEE
T ss_pred             cEEEeCCCCEEEEEEcC-CCCCceEEEEE
Confidence            35789999999999996 57999999999

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=97.38  E-value=0.0003  Score=37.65  Aligned_cols=29  Identities=21%  Similarity=0.520  Sum_probs=23.7

Q ss_pred             EEeecCCcEEEEEEecCCC--CCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAK--PAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~--P~~~i~W~~~   59 (65)
                      +.+.+|+.++|.|....+.  +...+.|||.
T Consensus         8 ~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq   38 (116)
T 3bj9_1            8 MSSALGTTIRLTCTLRNDHDIGVYSVYWYQQ   38 (116)
T ss_dssp             EEEETTCCEEEEEEECSSSCGGGCCEEEEEE
T ss_pred             EEEcCCCcEEEEEEeecCccCCCceEEEEEe
Confidence            5789999999999986543  5578999985

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.37  E-value=5.4e-05  Score=47.92  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=26.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .+.+.+|+.++|.|.+. + |++.|+|++++..
T Consensus       255 ~v~v~~G~~~~l~C~~~-g-p~p~i~W~~~~~~  285 (361)
T 2xot_A          255 AWEAHLGDTLTIRCDTK-Q-QGMTKVWVSPSNE  285 (361)
T ss_dssp             CCEEETTCCEEECCCCS-S-TTCEEEEECTTSC
T ss_pred             CceecCCCeEEEEeEee-C-CCCeEEEEeCCCe
Confidence            35789999999999995 4 8899999997654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.37  E-value=0.00024  Score=40.39  Aligned_cols=49  Identities=20%  Similarity=0.369  Sum_probs=33.6

Q ss_pred             EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728           9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus         9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      ..+.|..+|...... ..    ....+++...+.|.+.++.|++.+.|++++..
T Consensus       114 ~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~  162 (225)
T 4fmk_A          114 TWLRVIAQPENHAEA-QE----VTIGPQSVAVARCVSTGGRPPARITWISSLGG  162 (225)
T ss_dssp             EEEEEEBCCEEEEEE-CC----BCCSSSCEEEEEEEEEEEBSCCEEEEECSSCC
T ss_pred             eeeeeecCCceeecc-cc----eeecceeeeeeeeeecCCCCCCEEEEEECCcc
Confidence            345555565433222 11    24567788889998888899999999998753

>1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide; HET: NAG; 2.60A {Mus musculus} SCOP: b.1.1.2 d.19.1.1

Probab=97.36  E-value=0.00018  Score=43.53  Aligned_cols=29  Identities=38%  Similarity=0.623  Sum_probs=25.4

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      .|..++|.|.+.+..|+ ..|+|+|||+++
T Consensus       135 ~~~~~~L~C~v~gFyP~~I~v~W~~ng~~~  164 (222)
T 1iao_B          135 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEE  164 (222)
T ss_dssp             CSSSEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCCceEEEEEEeeeeCCCeEEEEEECCccc
Confidence            46789999999998887 589999999986

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=97.36  E-value=0.00024  Score=39.48  Aligned_cols=29  Identities=21%  Similarity=0.486  Sum_probs=24.5

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      ..+.+.+|+.++|.|.+.+ .|.+.|.|++
T Consensus        46 ~~~~v~~G~~v~L~C~~~~-~~~~~i~W~~   74 (145)
T 1z9m_A           46 SDETVVAGGTVVLKCQVKD-HEDSSLQWSN   74 (145)
T ss_dssp             CCEEEETTSCEEEEEECSC-CTTCCEEEEC
T ss_pred             ceEEEEcCCCEEEEEEEcC-CCCcEEEEEC
Confidence            3468999999999999865 5788999994

>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain, beta-2 microglobulin, ovalbumin-derived...; MHC-I, single chain MHC-I, glycoprotein; 1.80A {Mus musculus} PDB: 2qrs_A 2qri_A

Probab=97.35  E-value=0.0002  Score=47.18  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ...|...+|.|.+.+..|+ ..|+|+|||++++
T Consensus        38 ~~~~~~~~L~C~v~gFyP~~I~v~W~kng~~~~   70 (422)
T 2qrt_A           38 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP   70 (422)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             ccCCCCeEEEEEEEEEECCCCEEEEEECCEECc
Confidence            4557789999999999987 6899999999875

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.35  E-value=0.00015  Score=42.29  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=26.6

Q ss_pred             CeEEeecC--CcEEEEEEecCCCCCceEEEEEC---CEEc
Q psy7728          29 SKIEIREN--QEITLECLVKNAKPAAKIVWYRG---NTEL   63 (65)
Q Consensus        29 ~~~~~~~G--~~~~L~C~~~~~~P~~~i~W~~~---~~~l   63 (65)
                      ..+.+.+|  +.++|.|.+.+  |.+.++|+|+   |+.+
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~--p~~~v~w~~~~~~g~~~   52 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI--SNLNVSLCARYPEKRFV   52 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS--TTCCEEEEEETTTEEEC
T ss_pred             eEEEEecCCCccEEEeeccCC--CCcEEEEEhhcCCCccc
Confidence            35688999  99999999853  7899999984   5544

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.34  E-value=0.00048  Score=36.93  Aligned_cols=29  Identities=24%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|...+ .+...+.|||.
T Consensus        10 ~~~v~~G~~vtL~C~~~~-~~~~~v~W~rq   38 (112)
T 1fo0_B           10 WRLVPRGQAVNLRCILKN-SQYPWMSWYQQ   38 (112)
T ss_dssp             EEECCTTCCEEEEEEESC-TTCCEEEEEEE
T ss_pred             eEEEecCCcEEEEEEeCC-CCCceEEEEEE
Confidence            457899999999999864 46678999995

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.34  E-value=0.00068  Score=39.01  Aligned_cols=30  Identities=17%  Similarity=0.344  Sum_probs=23.5

Q ss_pred             EEeecCCcEEEEEEecCCCC-----CceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNAKP-----AAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P-----~~~i~W~~~~~   61 (65)
                      +.+.+|+.++|.|...+ .|     ...|.|||++.
T Consensus        11 v~~~~G~~v~L~C~~~~-~p~~~~~~~~v~W~~~~~   45 (222)
T 3sbw_C           11 YVVEYGSNMTIECKFPV-EKQLDLAALIVYWEMEDK   45 (222)
T ss_dssp             EEEETTSCEEEEEECCC-CSSCCTTTCEEEEEETTE
T ss_pred             EEEEcCCcEEEEeEecC-CCCCCCccEEEEEEECCc
Confidence            46789999999999854 34     34899999763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.34  E-value=9.1e-05  Score=46.23  Aligned_cols=31  Identities=16%  Similarity=0.391  Sum_probs=27.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +.+.+|+.++|.|.+. +.|.+.|+||+++..
T Consensus       168 ~~v~~G~~v~L~C~~~-g~p~p~i~W~~~~~~  198 (347)
T 2ifg_A          168 ASVDVGDDVLLRCQVE-GRGLEQAGWILTELE  198 (347)
T ss_dssp             SCCBTTCCEEEEEEEE-CSSCCCCCEEESCCC
T ss_pred             eEEeCCCcEEEEEEEe-cCCCCEEEEEcCCce
Confidence            3689999999999995 579999999999864

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=97.34  E-value=0.00011  Score=42.05  Aligned_cols=34  Identities=15%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             eEEeecCCcEEEEEEecC---CCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKN---AKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~---~~P~~~i~W~~~~~~l   63 (65)
                      .+.+.+|+.++|.|.+..   +.|.+.+.|++++..+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i   39 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMV   39 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEE
Confidence            357889999999999864   2477899999999875

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=97.32  E-value=0.00029  Score=37.87  Aligned_cols=29  Identities=17%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +.+.+|++++|.|......+...+.|||.
T Consensus        11 ~~~~~G~~v~L~C~~~~~~~~~~v~W~rq   39 (115)
T 2otu_A           11 ASFSLGASAKLTCTLSSQHSTYTIEWYQQ   39 (115)
T ss_dssp             EECCTTCCEEEEEEECGGGTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCCeEEEEEEe
Confidence            57899999999999855335678999994

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.31  E-value=0.00026  Score=43.02  Aligned_cols=31  Identities=16%  Similarity=0.392  Sum_probs=24.9

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.+.+.. +.+.|.|||++
T Consensus        35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~   66 (282)
T 1qok_A           35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQG   66 (282)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEeCCCeEEEEEeccCCCCCCceEEEEEeC
Confidence            35789999999999986542 36899999963

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.31  E-value=0.00046  Score=39.30  Aligned_cols=30  Identities=17%  Similarity=0.523  Sum_probs=24.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|...+ .+...+.|||..
T Consensus        25 ~v~v~~G~sVtL~C~~s~-~~~~~v~Wyrq~   54 (146)
T 2yc1_B           25 TLSVSPGERATLSCRASQ-SVRSYLAWYQQK   54 (146)
T ss_dssp             EEEECTTSCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             EEEEecCCCEEEEEEECC-CCCCEEEEEEEC
Confidence            457899999999999864 456789999953

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=97.30  E-value=0.00041  Score=37.51  Aligned_cols=31  Identities=19%  Similarity=0.522  Sum_probs=24.2

Q ss_pred             eEEeecCCcEEEEEEecCCC---CCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAK---PAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~---P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|......   +...|.|||+.
T Consensus        16 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~   49 (120)
T 3noi_A           16 EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDE   49 (120)
T ss_dssp             EEEEETTSCEEECCEECCCTTSCCCEEEEEEESS
T ss_pred             EEEEEcCCCEEEEeeecCCCCCCceeEEEEEecc
Confidence            45789999999999986542   14679999975

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=97.30  E-value=0.00047  Score=40.58  Aligned_cols=28  Identities=21%  Similarity=0.542  Sum_probs=24.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||
T Consensus        10 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~r   37 (246)
T 4dzb_B           10 WVISKSGTSVKIECRSLD-FQATTMFWYR   37 (246)
T ss_dssp             EEEEETTSCEEEEEEESS-SCCCSEEEEE
T ss_pred             EEEEeCCCcEEEEeEecC-CCceEEEEEE
Confidence            357899999999999865 5889999999

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.40  E-value=3.6e-05  Score=41.26  Aligned_cols=29  Identities=21%  Similarity=0.471  Sum_probs=24.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      +.+.+|+.++|.|...+ .|.+.|.|||+.
T Consensus         9 v~v~~G~~v~L~C~~~~-~~~~~v~W~r~~   37 (110)
T 1u3h_A            9 LTVWEGETAILNCSYEN-SAFDYFPWYQQF   37 (110)
Confidence            56889999999999864 477899999964

>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system, SELF antigen, invariant chain, CLIP; 2.20A {Homo sapiens}

Probab=97.29  E-value=0.00027  Score=42.78  Aligned_cols=30  Identities=17%  Similarity=0.512  Sum_probs=25.9

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .|...+|+|.+.+..|+ ..|+|+|||+++.
T Consensus       114 ~~~~~tL~C~a~gFyP~~I~v~W~knG~~~~  144 (207)
T 4aen_A          114 LREPNVLICFIDKFTPPVVNVTWLRNGKPVT  144 (207)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             ccCceeEEEEEeeecCeeEEEEEEECCEECc
Confidence            36678999999999886 6899999999873

>4f7e_A CD1D antigen, D polypeptide; protein-glycolipid complex, MHC-fold, IG-fold, antigen prese TCR, membrane, immune system; HET: 0SH NAG; 2.40A {Bos taurus} PDB: 4f7c_A*

Probab=97.29  E-value=0.00023  Score=44.60  Aligned_cols=29  Identities=28%  Similarity=0.602  Sum_probs=25.5

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..++|+|.+.+..|+ ..++|+|||+++.
T Consensus       199 ~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~  228 (283)
T 4f7e_A          199 PGRLLLVCHVSGFYPKPVRVMWMRGEQEEP  228 (283)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECT
T ss_pred             CCcEEEEEEECcEEcCceEEEEEECCcccc
Confidence            5678999999999997 5799999999875

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=97.28  E-value=0.00036  Score=38.20  Aligned_cols=30  Identities=20%  Similarity=0.481  Sum_probs=23.9

Q ss_pred             eEEeecCCcEEEEEEecCCCC---CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP---AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|......+   ...+.|||.
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~   42 (126)
T 4ffy_L           10 SLAVSLGQRATISCRASESVDHYGNSFIYWYQQ   42 (126)
T ss_dssp             EEEEETTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             eEEEeCCCCEEEEEecCCCcccCCCceEEEEEE
Confidence            357899999999999865421   567999995

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.28  E-value=0.00033  Score=41.88  Aligned_cols=29  Identities=17%  Similarity=0.551  Sum_probs=25.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+ .|.+.|.|||.
T Consensus        12 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~   40 (256)
T 3tf7_C           12 RVTVSEGASLQLRCKYSY-SATPYLFWYVQ   40 (256)
T ss_dssp             EEEEETTSCEEECCEEEC-SSCCEEEEEEE
T ss_pred             eEEecCCCeEEEEEEeCC-CCCceEEEEEE
Confidence            457899999999999976 49999999993

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=97.27  E-value=0.00023  Score=40.73  Aligned_cols=30  Identities=17%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +.+.+|+.++|.|.+ . .|.+.|.|||++..
T Consensus         5 v~~~~G~~VtL~c~~-~-~~~~~i~W~~~~~~   34 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDK   34 (171)
T ss_dssp             EEEETTCCEEECCCC-S-SCCSCEEEEETTEE
T ss_pred             EEEEcCCCEEEcCCC-C-CCcceEEEEeCCcE
Confidence            567899999999987 3 48999999999864

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.27  E-value=0.00024  Score=42.75  Aligned_cols=29  Identities=10%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             EEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      +.+.+|+.++|.|.+.+.. |.+.|.|||+
T Consensus        10 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~   39 (256)
T 1nqb_A           10 ELVKPGASVKLSCKASGYTFTSYWMHWVKQ   39 (256)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSCEEEEEE
T ss_pred             eeecCCCcEEEEEEeccccCCCceEEEEEE
Confidence            4688999999999986532 3689999994

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.27  E-value=0.00053  Score=40.73  Aligned_cols=30  Identities=27%  Similarity=0.555  Sum_probs=24.8

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|...+.. +...|.|||+
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   40 (242)
T 1hxm_B           10 SSTKTLSKTARLECVVSGITISATSVYWYRE   40 (242)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             eEEecCCCcEEEEEEeCCccccCceEEEEEe
Confidence            45789999999999987642 6789999995

>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D, alpha-galactosylceramide, protein complex, cell membrane, disulfide bond, endosome; HET: NDG BMA NAG AGH; 2.50A {Homo sapiens} PDB: 3vwj_A* 3vwk_A* 4en3_C* 2po6_A* 3u0p_A* 3sdx_A* 1zt4_A* 3tzv_C*

Probab=97.25  E-value=0.00033  Score=43.92  Aligned_cols=29  Identities=28%  Similarity=0.531  Sum_probs=25.3

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..++|+|.+.+..|+ ..++|+|||+++.
T Consensus       200 ~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~  229 (284)
T 3huj_A          200 PGRLLLVCHVSGFYPKPVWVKWMRGEQEQQ  229 (284)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECT
T ss_pred             CCceEEEEEECcEEccEEEEEEEECCEecc
Confidence            4678999999999997 5899999999874

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=97.24  E-value=0.00034  Score=42.07  Aligned_cols=30  Identities=10%  Similarity=0.371  Sum_probs=24.2

Q ss_pred             eEEeecCCcEEEEEEecCCCC----CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKP----AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P----~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.+..+    .+.|.|||+
T Consensus        24 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   57 (268)
T 1x9q_A           24 SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQ   57 (268)
T ss_dssp             EECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             eEEecCCCCEEEEeEecCCcccccCCceEEEEEE
Confidence            457899999999999865432    589999985

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.24  E-value=0.00037  Score=40.12  Aligned_cols=27  Identities=22%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.+.   |.+.|.|||+
T Consensus         9 ~~~v~~G~~v~L~C~~~---~~~~v~W~k~   35 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT---SNNFVSWYQQ   35 (211)
T ss_dssp             EEEECTTCEEEEEEECC---CSSCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC---CCCeEEEEEE
Confidence            35789999999999985   8899999994

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=97.24  E-value=0.0006  Score=37.80  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=23.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|...+.. ...+.|||.
T Consensus        13 ~~~v~~G~~vtL~C~~s~~~-~~~v~WyrQ   41 (128)
T 1nez_G           13 KMDAELGQKVDLVCEVLGSV-SQGCSWLFQ   41 (128)
T ss_dssp             CEEECTTCCEEEEEEEESCC-SSCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEeCccC-CCcEEEEEe
Confidence            46789999999999986543 367999984

>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} PDB: 3p77_A*

Probab=97.23  E-value=0.00031  Score=43.73  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=26.0

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .+..++|.|.+.+..|+. .|+|+|||+++.
T Consensus       193 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~  223 (275)
T 3p73_A          193 ADGILTLSCHAHGFYPRPITISWMKDGMVRD  223 (275)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECG
T ss_pred             cCCCceEEEEEEEEcCCCCEEEEEECCEECC
Confidence            467789999999999986 899999999863

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=97.23  E-value=0.00032  Score=41.44  Aligned_cols=50  Identities=18%  Similarity=0.335  Sum_probs=34.3

Q ss_pred             cCCCEEEEEEcC-CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCC-CceEEE
Q psy7728           5 YGPRTRLYQFAP-PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVW   56 (65)
Q Consensus         5 ~~~~~~L~V~~p-P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P-~~~i~W   56 (65)
                      ++..+.|+|... +..|.|.....  ...+.+|+.++|.|.+.+..| +..++|
T Consensus       114 ~~~~t~l~V~~~~~~~P~i~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H          114 WGQGTMILVSSGTTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             ECCCEEEEECCCCCBCCEEEEEEE--EECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             hCCccEEeeccCCCCCCcEEEecC--cccccCCCCEEEEEEEEEEECCCeEEEE
Confidence            467788999753 34455542111  113468999999999998777 578999

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=97.22  E-value=0.00022  Score=41.16  Aligned_cols=30  Identities=13%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|......+.+.|.|||+
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~   37 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHT   37 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESS
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEec
Confidence            467899999999998754445789999994

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=97.19  E-value=0.00017  Score=38.55  Aligned_cols=30  Identities=27%  Similarity=0.699  Sum_probs=24.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|....+.+...+.|||.
T Consensus         8 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq   37 (111)
T 2qhl_A            8 VKTVKRGENVTMECSMSKVKDKDKLAWYRQ   37 (111)
T ss_dssp             EEECCTTCCEEECCBCTTCSCGGGEEEEEE
T ss_pred             eEEEeCCCCEEEEEEccCCcccceEEEEEe
Confidence            457899999999999852446778999994

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=97.19  E-value=0.00087  Score=36.92  Aligned_cols=30  Identities=23%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|.|...+......+.|||.
T Consensus        10 ~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq   39 (129)
T 3rrq_A           10 LLVVTEGDNATFTCSFSNTSESFVLNWYRM   39 (129)
T ss_dssp             EEEEETTSCEEEEEECCCCC-CEEEEEEEE
T ss_pred             EEEEeCCCCEEEEeEecCCCCCcEEEEeEe
Confidence            467899999999999865433567999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	0.004
d1dr9a2	95	b.1.1.3 (A:106-200) CD80, second domain {Human (Ho	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.6 bits (68), Expect = 0.004
 Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
          +I+  P +   ++R  + + L   V          W +   +++
Sbjct: 2  QIIQFPED--QKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQ 42

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.6 bits (68), Expect = 0.004
 Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 8/48 (16%)

Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
          P  SI     P++            + C      P   + W     EL
Sbjct: 4  PTPSISDFEIPTS--------NIRRIICSTSGGFPEPHLSWLENGEEL 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.19
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.17
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.09
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.04
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.03
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.99
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.92
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.9
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.89
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.83
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.83
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.83
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.82
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.79
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.78
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.78
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.78
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.75
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.72
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.71
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.68
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.67
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.67
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.65
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.63
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.62
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.61
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.6
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.6
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.59
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.58
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.57
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.57
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.56
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.56
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.55
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.53
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.51
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.51
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.43
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.42
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.42
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.41
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.38
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.37
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.31
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.28
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.26
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.26
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.25
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.21
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.21
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.21
d2avga1	110	Cardiac myosin binding protein C, different domain	98.2
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.16
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.15
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.14
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.13
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.13
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.12
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.1
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.08
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.06
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.0
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.98
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.97
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.96
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.96
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.9
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.89
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.88
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.87
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.81
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.78
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.75
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.68
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.68
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.66
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.64
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.62
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.62
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.61
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.52
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.5
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.49
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.48
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.44
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.42
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.4
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.4
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.36
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.35
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.29
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.29
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.25
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.22
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.2
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.19
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.17
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.17
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.12
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.11
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.08
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.07
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.06
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.05
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	97.05
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.99
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.98
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.97
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.95
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.94
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.94
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.94
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.93
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.93
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.93
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.93
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.93
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.92
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.91
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.9
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.89
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.87
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.87
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.87
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.87
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.85
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.85
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.84
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.84
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.83
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.82
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.81
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.8
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.8
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.78
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.77
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.75
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.74
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.72
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.71
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.7
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.7
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.69
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.68
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.67
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.65
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.64
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.63
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.6
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.58
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.57
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.54
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.53
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.52
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.51
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.49
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.45
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.44
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.4
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.37
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.33
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.32
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.31
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.31
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.24
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.22
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.16
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.14
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.14
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.11
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.1
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.06
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.04
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.03
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.02
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.01
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	95.98
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.97
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	95.81
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.72
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	95.66
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.66
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.6
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	95.59
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	95.56
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.52
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	95.51
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	95.42
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	95.35
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.31
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.2
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.19
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	95.13
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.12
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.12
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.1
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	95.1
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.07
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.06
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	95.02
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	95.02
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.02
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	94.98
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	94.87
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.82
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	94.74
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	94.66
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	94.59
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	94.59
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.57
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.55
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.5
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	94.5
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	94.44
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.34
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.33
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	94.3
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.3
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.3
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.27
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.16
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.12
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.07
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	94.07
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.04
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.03
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.01
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.0
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	93.99
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	93.99
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.95
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	93.94
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	93.94
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	93.89
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.88
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	93.87
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	93.86
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	93.86
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	93.83
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	93.82
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	93.81
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.8
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.66
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	93.64
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.6
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	93.55
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.55
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.52
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.43
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.28
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	93.24
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.21
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.19
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.05
d1gsma2	116	Mucosal addressin cell adhesion molecule-1 (MADCAM	93.01
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	92.5
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	92.5
d2j88h1	68	Immunoglobulin heavy chain gamma constant domain 1	92.13
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	90.66
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	89.45
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	87.31
d2oz4a2	97	Intercellular adhesion molecule-1, ICAM-1 {Human (	86.67
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	86.18
d2oz4a1	84	Intercellular cell adhesion molecule-1 (ICAM-1) {H	85.57
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	84.15
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	83.45
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	81.32

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.7e-11  Score=65.11  Aligned_cols=45  Identities=27%  Similarity=0.594  Sum_probs=36.9

Q ss_pred             CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728          16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK   64 (65)
Q Consensus        16 pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~   64 (65)
                      ||..+.|...+.    .+.+|+.++|+|.+.+++|.  +.|+|||||+++.
T Consensus         1 PP~~v~i~~~p~----~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~   47 (106)
T d1zxqa1           1 PPRQVILTLQPT----LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLH   47 (106)
T ss_dssp             CCCCCEEEEESS----EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEE
T ss_pred             CCcCCEecCCCC----EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEee
Confidence            677777766554    78899999999999998864  4799999999873

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=6.5e-11  Score=63.08  Aligned_cols=45  Identities=22%  Similarity=0.531  Sum_probs=38.2

Q ss_pred             cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        15 ~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +||..|.+.. +.    .+.+|+.++|.|.+..++|++.|+|||+|+++.
T Consensus         1 VPP~~p~~~~-~~----~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~   45 (110)
T d1f97a2           1 VPPSKPTISV-PS----SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML   45 (110)
T ss_dssp             BCCCCCEEEC-CS----EEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred             CCCccceeCC-CC----EEecCCeEEEEEEeecCCCCCEEEEEeCCeEec
Confidence            5898888764 32    588999999999998789999999999998763

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-10  Score=62.29  Aligned_cols=46  Identities=35%  Similarity=0.574  Sum_probs=35.4

Q ss_pred             cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCce--EEEEECCEEcc
Q psy7728          15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK   64 (65)
Q Consensus        15 ~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~--i~W~~~~~~l~   64 (65)
                      ..|..+.|...+.    .+.+|+.++|+|.+.+++|++.  ++||||++++.
T Consensus         2 ~~P~~v~i~p~~~----~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~   49 (103)
T d1iama1           2 WTPERVELAPLPS----WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK   49 (103)
T ss_dssp             BCCSEEEECCCCS----EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEE
T ss_pred             CCCCceEEeCCCc----eEeCCCEEEEEEEecCCCCCCceEEEEcccccccc
Confidence            4555555543333    6889999999999999999874  78999999863

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.7e-10  Score=62.08  Aligned_cols=43  Identities=26%  Similarity=0.406  Sum_probs=36.6

Q ss_pred             CCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728          17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK   64 (65)
Q Consensus        17 P~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~~~~l~   64 (65)
                      |++|.|....     .+.+|+.++|+|.+.+++|++  .|+||++++.+.
T Consensus         2 P~~P~I~~~~-----~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~   46 (109)
T d1vcaa1           2 PKDPEIHLSG-----PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK   46 (109)
T ss_dssp             CSCCEEEESS-----CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             CCCCEEecCC-----CccCCCeEEEEeEeCCcCCCCceEEEEeccCceee
Confidence            7788887644     488999999999999999987  589999998763

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.9e-11  Score=62.93  Aligned_cols=44  Identities=18%  Similarity=0.473  Sum_probs=35.5

Q ss_pred             cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        15 ~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +||..+.+.. +    ..+.+|+.++|.|.+.+++|++.++|||||+.+
T Consensus         1 VPP~~p~~~~-~----~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i   44 (104)
T d1nbqa2           1 VPPSKPTVNI-P----SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM   44 (104)
T ss_dssp             BCCCCCCCCC-B----SEEETTSCEEECCCCCSCBSCCEEEEEETTCCC
T ss_pred             CCCcccccCC-C----CEEecCCcEEEEEEeecCCCCCEEEEEECCEEc
Confidence            5787665432 2    257899999999998778999999999999875

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6e-11  Score=62.60  Aligned_cols=47  Identities=15%  Similarity=0.174  Sum_probs=37.0

Q ss_pred             cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        15 ~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +|+..|.+...+  ..+.+.+|+.++|+|.+.++.|+++|+|||||+.+
T Consensus         2 ~P~~~P~~~~~~--~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l   48 (93)
T d1n26a1           2 APRRCPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA   48 (93)
T ss_dssp             CSSCCCCCCCCT--TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSS
T ss_pred             CCCCCCcEEeCC--CCEEEeCCCcEEEEEEeecCCCCceEEEEEccccc
Confidence            466666665433  36788999999999999877677899999998765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.92  E-value=9.7e-10  Score=57.23  Aligned_cols=32  Identities=16%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+|++++|+|.+.++.|++.+.|||||+.+
T Consensus        13 ~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~   44 (89)
T d1fnla2          13 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR   44 (89)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEE
T ss_pred             eEccCCeEEEEEEecCCCCCcEEEEEEccccc
Confidence            57899999999999877888899999999875

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.5e-09  Score=54.67  Aligned_cols=34  Identities=29%  Similarity=0.698  Sum_probs=29.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. |.|.| +|+|||||+++.
T Consensus        10 ~~~v~~G~~~~l~C~~~-g~P~P~~i~W~k~g~~i~   44 (85)
T d1rhfa2          10 DLAVPPNAPFQLSCEAV-GPPEPVTIVWWRGTTKIG   44 (85)
T ss_dssp             CEEECTTCCEEEEEEEE-CSSSCCEEEEEETTEECS
T ss_pred             cEEEcCCCEEEEEEEEe-cCCcceEEEEEECCEECC
Confidence            35788999999999996 57776 999999999875

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.89  E-value=1.2e-09  Score=56.70  Aligned_cols=33  Identities=27%  Similarity=0.547  Sum_probs=29.3

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|+|.+.++.|++.+.|||||+.+.
T Consensus        11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~   43 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKK   43 (88)
T ss_dssp             EECTTCCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             eEecCCeEEEEEEecCCCCCcEEEEEeeccccc
Confidence            578999999999998777889999999998763

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.83  E-value=2.3e-09  Score=55.48  Aligned_cols=34  Identities=29%  Similarity=0.659  Sum_probs=30.1

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.+.|.|.+. |.|+|.|+|||||+++.
T Consensus        12 ~~~v~~G~~~~l~C~~~-g~P~p~v~W~~~~~~i~   45 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLS   45 (89)
T ss_dssp             EEEECTTSCEEEECEEE-EESCCCCEEEETTEECC
T ss_pred             CEEEeCCCeEEEEEEEE-EeCCCEEEEEeCCccCc
Confidence            45788999999999995 58999999999999875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=2.6e-09  Score=54.79  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=29.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ...+.+|+.++|.|.+.++.|.+.|+|||++..+
T Consensus        11 ~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~   44 (89)
T d1gl4b_          11 SQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK   44 (89)
T ss_dssp             EEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBC
T ss_pred             eEEEeCCCcEEEEEEccCCCCCCEEEEecCCcee
Confidence            4578999999999999878899999999998654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.9e-09  Score=55.81  Aligned_cols=43  Identities=16%  Similarity=0.328  Sum_probs=32.8

Q ss_pred             EEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        21 ~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .|...+......+..|+.++|.|.+. |.|.|.|+|||||+.+.
T Consensus         5 ~i~~~~~~~~~t~~~G~~v~l~C~~~-g~P~p~i~W~~~g~~i~   47 (100)
T d1qz1a3           5 TVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIE   47 (100)
T ss_dssp             EEEESCSEEEEETTSCCCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             EEEeCCCceeEEEcCCCCEEEEEEEE-EecCCEEEEEeCCcccc
Confidence            45443332234667899999999995 57999999999999874

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=5.4e-09  Score=54.45  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=32.3

Q ss_pred             CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        16 pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |..+|.|.....    .+.+|+.++|+|.+.+  |++.|+||+||+.+.
T Consensus         2 Pv~~P~i~~~~~----~v~~g~~v~l~C~~~~--~~~~v~W~~~~~~l~   44 (96)
T d1l6za2           2 PVTQPFLQVTNT----TVKELDSVTLTCLSND--IGANIQWLFNSQSLQ   44 (96)
T ss_dssp             CCCCCCEECSCS----EECTTSCEEEEECCCC--SSCEEEEEETTEECC
T ss_pred             CCCCCeEEcCce----EEeCCCeEEEEEccCC--CCCCEEEEEeeeecc
Confidence            334455654333    6899999999998743  668999999999874

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6e-09  Score=53.64  Aligned_cols=34  Identities=21%  Similarity=0.544  Sum_probs=29.9

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.++|.|.+. +.|.+.+.|||||+.+.
T Consensus         5 ~~~v~~G~~~~l~C~v~-g~p~p~v~W~k~g~~l~   38 (91)
T d1rhfa1           5 KLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQ   38 (91)
T ss_dssp             EEEEETTCCEEEEEEEE-SCSSCCEEEEETTEECC
T ss_pred             eEEEcCCCeEEEEEEEE-ecCCceEEEEEeecccc
Confidence            46789999999999995 57999999999999874

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.78  E-value=7.6e-09  Score=53.10  Aligned_cols=45  Identities=16%  Similarity=0.368  Sum_probs=33.3

Q ss_pred             CccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        18 ~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+|.|...+.  ...+.+|+.++|+|.+.+..++..+.||+||+.+.
T Consensus         3 pkp~i~~~P~--~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~   47 (85)
T d2fcba1           3 PKAVLKLEPQ--WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP   47 (85)
T ss_dssp             CBCEEEEESC--CSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT
T ss_pred             CCCEEEECCC--CeEEcCCCeEEEEEEEeeccceeEEEeeccccccc
Confidence            3556654432  23688999999999997654556799999999874

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.2e-09  Score=54.64  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.5

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|+|.+.++.|+.++.|||||+.+.
T Consensus        11 ~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~   43 (89)
T d1f2qa2          11 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK   43 (89)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECC
T ss_pred             eEeCCCEEEEEEEecCCCCCeEEEEEEeeeccc
Confidence            578999999999998777888999999999864

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.78  E-value=1.2e-08  Score=53.19  Aligned_cols=33  Identities=30%  Similarity=0.547  Sum_probs=29.1

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.+.|.|.+. |.|.+.|+|||||++|.
T Consensus        11 ~~v~~G~~~~l~C~~~-g~P~p~v~W~~~~~~l~   43 (97)
T d1koaa1          11 TEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELK   43 (97)
T ss_dssp             CEEETTSCEEEEEEEE-CSSCCEEEEEETTEECC
T ss_pred             EEEeCCCcEEEEEEEE-EcCCCEEEEEEeeeccc
Confidence            4688999999999995 57999999999999874

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.75  E-value=5.7e-09  Score=54.02  Aligned_cols=33  Identities=21%  Similarity=0.529  Sum_probs=29.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+..|+.+.|.|.+. |.|.|.|+|||||+++.
T Consensus        11 ~~v~~G~~~~l~C~~~-g~P~p~v~W~k~g~~i~   43 (89)
T d1cs6a4          11 TEADIGSDLRWSCVAS-GKPRPAVRWLRDGQPLA   43 (89)
T ss_dssp             EEEETTCCEEEECEEE-EESCCEEEEEETTEECC
T ss_pred             EEECCCCcEEEEEEEE-EEcCCEEEEEEeecccc
Confidence            4688999999999995 58999999999999874

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.75  E-value=9.1e-09  Score=53.73  Aligned_cols=33  Identities=15%  Similarity=0.467  Sum_probs=29.6

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.++|.|.+. |+|.|.++|||||+++.
T Consensus        14 ~~v~~g~~v~l~c~v~-g~P~p~v~W~k~~~~i~   46 (98)
T d1g1ca_          14 QTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIE   46 (98)
T ss_dssp             EEEETTSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             EEEcCCCcEEEEEEEE-EecCCeEEEEeCceEEe
Confidence            5789999999999995 58999999999999874

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.72  E-value=1.5e-08  Score=53.25  Aligned_cols=34  Identities=21%  Similarity=0.694  Sum_probs=30.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.+.|.|.+. |.|.+.|+|||||+++.
T Consensus        17 ~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~~~~i~   50 (102)
T d1fhga_          17 DMEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVK   50 (102)
T ss_dssp             CEEEETTSCEEEEEEEE-EESCCEEEEEETTEECC
T ss_pred             cEEEecCCcEEEEEEEE-eccCCeEEEEeeecccc
Confidence            36788999999999996 57999999999999874

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.71  E-value=1.2e-08  Score=53.34  Aligned_cols=33  Identities=6%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|++++|.|.+. |.|.+.|+|||||+++.
T Consensus        13 ~~~~~G~~v~l~C~~~-g~P~~~v~W~k~g~~i~   45 (97)
T d1biha3          13 MMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVN   45 (97)
T ss_dssp             EEEETTSCEEEEEEEE-CSSCCCCEEEETTEECC
T ss_pred             EEEecCCeEEEEEEEE-EecCCEEEEEEeeeecc
Confidence            6789999999999985 57999999999999874

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.68  E-value=8.2e-09  Score=53.95  Aligned_cols=33  Identities=15%  Similarity=0.504  Sum_probs=28.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.+.|.|.+. |+|.|.|+|||||+++.
T Consensus        15 ~~v~~G~~v~l~C~~~-g~P~p~i~W~kng~~l~   47 (97)
T d3dara1          15 HAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFK   47 (97)
T ss_dssp             EEECTTCCEEEECCEE-EESCCEEEEEETTEECC
T ss_pred             EEECCCCcEEEEEEEe-EECCCEEEEEECCEecc
Confidence            4678999999999985 57999999999999874

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.1e-09  Score=56.78  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=30.1

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ++.+.+.+|+.+.|.|.+. |+|.|.|+|+|||..+
T Consensus        11 p~~~~~~~G~~~~l~C~a~-G~P~P~v~W~k~g~~~   45 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAW-GNPLPELKCLKDGTFP   45 (84)
T ss_dssp             CSEEEEETTCEECCCCCCE-EESCCEEEEEETTTEE
T ss_pred             CccEEEeCCCEEEEEEEEe-EcCccEEEEEEeeccc
Confidence            3567899999999999995 5899999999998764

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4e-08  Score=51.69  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+..|+.++|.|.+.+ .|.+.|.|++||+.+.
T Consensus        10 ~~i~v~~G~~v~l~C~v~g-~P~p~i~W~~~g~~i~   44 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTG-QLSDIAYWKWNGSVID   44 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEE-CTTCEEEEEETTEECC
T ss_pred             CEEEEeCCCEEEEEEEecc-CCCCeEEEEECCcccc
Confidence            3457888999999999964 7999999999998864

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.65  E-value=1.3e-08  Score=52.67  Aligned_cols=36  Identities=22%  Similarity=0.560  Sum_probs=29.3

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.++|.|.+.+..+++.|.||+||+.+.
T Consensus        10 ~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~   45 (94)
T d1biha1          10 AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYN   45 (94)
T ss_dssp             SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCC
T ss_pred             CcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeee
Confidence            456889999999999997654456899999998764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=2.3e-08  Score=52.02  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=25.3

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l   63 (65)
                      ..+..|+.+.|+|.+.+..|.+.|+||| ||+.+
T Consensus        10 ~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~   43 (97)
T d1epfa1          10 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKL   43 (97)
T ss_dssp             EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEE
T ss_pred             EEEccCCcEEEEEEEEeccCCCEEEEEEeeeeee
Confidence            3578899999999996643458999999 45543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=2e-08  Score=52.05  Aligned_cols=33  Identities=18%  Similarity=0.446  Sum_probs=29.2

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.+.|.|.+. |.|.+.++|||+++.+.
T Consensus        11 ~~v~~G~~~~l~C~v~-g~p~p~v~W~~~~~~i~   43 (92)
T d1epfa2          11 QEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVI   43 (92)
T ss_dssp             EECCTTSCEEECCEEE-CSSCCEEEEEETTEEGG
T ss_pred             EEEeCCCcEEEEEEEe-ecCCCeEEEEEcCcccc
Confidence            5789999999999986 47999999999998763

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.61  E-value=4.3e-09  Score=55.92  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+.+.+|+.+.|.|.+..+.|.+.|+|||||+.+
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~   46 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPN   46 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTC
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccc
Confidence            34689999999999998778899999999998654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.60  E-value=4.2e-09  Score=54.45  Aligned_cols=33  Identities=18%  Similarity=0.527  Sum_probs=28.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+. |.|.|.|+||+||+++.
T Consensus         9 ~~v~~G~~~~l~C~~~-g~P~p~v~W~~~g~~l~   41 (91)
T d1tnna_           9 MTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLS   41 (91)
T ss_dssp             EECSSSSCCCEEEECC-CSSCCCCEEESSSSTTC
T ss_pred             EEEeCCCcEEEEEEEE-EEeCCeEEEEEeecccc
Confidence            5789999999999985 58999999999997653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.3e-08  Score=52.03  Aligned_cols=32  Identities=19%  Similarity=0.423  Sum_probs=28.1

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ...++.++|+|.+.|++|.+.|+|++||+++.
T Consensus        13 ~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~   44 (95)
T d1dr9a2          13 IPTSNIRRIICSTSGGFPEPHLSWLENGEELN   44 (95)
T ss_dssp             CSSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             cCCCCEEEEEEEECcccCCCEEEEecCCcEec
Confidence            34578889999999999999999999998874

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.3e-08  Score=52.64  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=28.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +...+.+|+++.|.|.+.+..++|.|+|+|+++.+
T Consensus        11 ~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~   45 (104)
T d2aw2a1          11 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTT   45 (104)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSC
T ss_pred             CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCccc
Confidence            34578999999999999875446899999987543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.58  E-value=2.2e-08  Score=51.75  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+.+|+.+.|.|.+. |+|+|.++|||||+.+.
T Consensus        10 ~~~~v~~G~~~~l~c~~~-g~P~p~v~W~~~~~~i~   44 (93)
T d1wiua_          10 RKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAA   44 (93)
T ss_dssp             CEEEECSSBCCEEEEEEE-CCSSCEEEEECSSSSCB
T ss_pred             CcEEEeCCCeEEEEEEEE-EecCCeEEEEeeeeece
Confidence            356899999999999996 58999999999997653

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.7e-09  Score=56.31  Aligned_cols=48  Identities=19%  Similarity=0.441  Sum_probs=36.7

Q ss_pred             EEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          11 LYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        11 L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      |+|.+||.   |.....   ..+.+|+.+.|.|.+.++.|++.+.|+++++.+.
T Consensus         2 L~V~~Pp~---i~~~~~---~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~   49 (115)
T d2crya1           2 LTVNGPPI---ISSTQT---QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE   49 (115)
T ss_dssp             CCCCSSCC---EEEECC---CCCCTTSCCCCCEEECCSSCCSEEEEESSSCEEC
T ss_pred             eEEecCCE---EecCCC---EEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEe
Confidence            67888874   332222   3578999999999998777888999999998763

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.2e-08  Score=54.60  Aligned_cols=35  Identities=17%  Similarity=0.436  Sum_probs=30.4

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +..+.+.+|+.++|.|.+. |.|.+.|+|+|++..+
T Consensus        16 ~~~v~v~~G~~v~L~C~v~-G~P~p~i~W~~~~~~~   50 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQG   50 (130)
T ss_dssp             CCEEEESSSSCCCCEEECC-SBSCCEEEEEEECCCS
T ss_pred             CCCEEEEcCCeEEEEEEEE-EecCCeEEEeeCCeEc
Confidence            4467899999999999995 6899999999988765

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.6e-08  Score=50.82  Aligned_cols=30  Identities=10%  Similarity=0.089  Sum_probs=26.3

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .+.+|+.++|+|.+. |+|+|.|+|++++..
T Consensus        10 ~v~~G~~~~L~C~~~-g~p~P~i~W~~~~~~   39 (84)
T d2nxyb2          10 HLLQGQSLTLTLESP-PGSSPSVQCRSPRGK   39 (84)
T ss_dssp             CEETTCCEEEEEECC-TTCCCEEEEECTTCC
T ss_pred             EEECCCeEEEEEEeE-cCCchheEEEeeccc
Confidence            578999999999985 579999999998754

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.2e-08  Score=52.80  Aligned_cols=32  Identities=16%  Similarity=0.362  Sum_probs=27.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|+.++|.|.+. |.|.|.|+||+++.++
T Consensus        12 ~~v~~G~~v~l~C~~~-g~P~p~v~W~~~~~~~   43 (92)
T d2ifga1          12 ASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQ   43 (92)
T ss_dssp             SCCBTTCCEEEEEEEE-CSSCCCCCEEESCCCS
T ss_pred             EEEeCCCEEEEeeecc-CCCCcEEEEEECCcee
Confidence            3689999999999996 5899999999998764

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.9e-08  Score=51.52  Aligned_cols=34  Identities=12%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+.+|+.+.|.|.+. |.|.+.|+|||||+++.
T Consensus         9 ~~~v~~G~~~~l~C~v~-g~p~p~v~W~k~~~~l~   42 (101)
T d2cqva1           9 DQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQ   42 (101)
T ss_dssp             SEEEETTCCEEEEEEEE-SSSSCEEEEEESSSBCC
T ss_pred             cEEEeCCCcEEEEEEEE-ecCCCEEEEEeCceeec
Confidence            35789999999999996 57999999999998764

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.3e-08  Score=52.14  Aligned_cols=44  Identities=18%  Similarity=0.453  Sum_probs=30.5

Q ss_pred             EEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          12 YQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        12 ~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +|++||....+   ..     -..+....+.|.+. |+|+|.|+|||||+++.
T Consensus         1 tV~~PP~i~~~---~~-----~~~~~~~~i~~~v~-G~P~P~v~W~~n~~~i~   44 (105)
T d1wwca_           1 TVYYPPRVVSL---EE-----PELRLEHCIEFVVR-GNPPPTLHWLHNGQPLR   44 (105)
T ss_dssp             CCCCCCCCCCC---CC-----CCCCCEEEEEEEEE-CSSCCEEEEEETTEECC
T ss_pred             CEEcCCeeEEe---CC-----CEEEEEEEEEEEEE-EeCCCeEEEEeCccccC
Confidence            47889875332   11     12334456788885 58999999999999874

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.3e-08  Score=50.22  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=29.5

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+.+|+++.|+|.+..+.|.+.++|++++.++
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~   45 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSL   45 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeee
Confidence            34578899999999998777899999999987643

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.7e-08  Score=50.47  Aligned_cols=32  Identities=16%  Similarity=0.459  Sum_probs=27.6

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+.+|+.+.|.|.+ + .|++.++|||||+++.
T Consensus        16 ~~v~~G~~v~l~c~v-~-~p~~~v~W~k~g~~i~   47 (94)
T d1pd6a_          16 YQVSKGHKIRLTVEL-A-DHDAEVKWLKNGQEIQ   47 (94)
T ss_dssp             EEEETTSCEEEEEEC-S-SSSSCCEEEESSSEEC
T ss_pred             EEECcCCeEEEEEEE-C-CCCceEEEEEcCccce
Confidence            468899999999998 3 4889999999998863

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.51  E-value=5.7e-08  Score=50.08  Aligned_cols=33  Identities=24%  Similarity=0.455  Sum_probs=28.1

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      ..+.+.+|+.++|.|.+. |+|.+.|+|||++..
T Consensus        13 ~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~~~~   45 (91)
T d1cs6a3          13 ADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGS   45 (91)
T ss_dssp             SEEEEETTCCEEEECEEE-EESCCEEEEEECCSC
T ss_pred             CcEEEecCCcEEEEEEEE-EccCCEEEEEecccc
Confidence            456889999999999996 579999999997643

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.43  E-value=1.5e-07  Score=49.19  Aligned_cols=33  Identities=12%  Similarity=0.320  Sum_probs=27.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      ..+.+..|++++|.|.+. |.|.+.|+|||++..
T Consensus        13 ~~~tv~~G~~v~l~C~v~-g~P~p~v~W~k~~~~   45 (109)
T d2fdbp2          13 ANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEK   45 (109)
T ss_dssp             CCEEECTTCCEEEEEEEE-CSSCCEEEEEEEC--
T ss_pred             CCEEEecCCcEEEEEEEE-EcCCCeEEEEecCcc
Confidence            346889999999999996 589999999997653

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.2e-07  Score=48.72  Aligned_cols=32  Identities=22%  Similarity=0.538  Sum_probs=27.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+.++|.|.+ + .|.+.+.|||||+++.
T Consensus        10 ~~v~~G~~v~l~C~v-~-~p~~~v~W~k~~~~~~   41 (90)
T d1x44a1          10 TTAYCGERVELECEV-S-EDDANVKWFKNGEEII   41 (90)
T ss_dssp             EEEETTEEEEEEEEC-S-SSSCCCEEEETTEECC
T ss_pred             EEEeCCCcEEEEEEE-C-CCCceEEEEEeecccC
Confidence            578999999999998 3 5888999999998863

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.42  E-value=1e-08  Score=55.19  Aligned_cols=31  Identities=26%  Similarity=0.507  Sum_probs=26.9

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .+.+|++++|.|.+..|.|.|.+.|+|++..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~   43 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSG   43 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETT
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCcc
Confidence            4678999999999766799999999998654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.41  E-value=1.1e-07  Score=49.35  Aligned_cols=29  Identities=38%  Similarity=0.699  Sum_probs=24.9

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +|+.++|.|.+. |.|.+.++|||||+.+.
T Consensus        21 ~~~~v~l~C~~~-g~P~p~v~W~~ng~~i~   49 (97)
T d1cs6a1          21 AEEKVTLTCRAR-ANPPATYRWKMNGTELK   49 (97)
T ss_dssp             SCCEEEECCEEE-EESCCEEEEEETTEECC
T ss_pred             CCCeEEEEEEEE-EeCCCEEEEEEeeeecc
Confidence            357899999995 57999999999999874

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.8e-07  Score=47.22  Aligned_cols=32  Identities=9%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +.+.+|+.+.|.|.+. |.|++.|+|++++..+
T Consensus        11 ~~~~~G~~v~l~C~~~-g~p~p~i~W~~~~~~~   42 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTT-GCESPFFSWRTQIDSP   42 (90)
T ss_dssp             EEEETTSCEEEEEEEE-SCSSCEEEEEETTCCC
T ss_pred             EEEECCCEEEEEEecc-CCCCceEEEEecCccc
Confidence            3567899999999996 5899999999987543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.8e-08  Score=48.71  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=24.6

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+.+|+.++|+|.+.+..++..+.||||+..+.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~   44 (82)
T d1f2qa1          12 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE   44 (82)
T ss_dssp             EEETTCCEEEECCTTCC----CCEEEETTEECS
T ss_pred             EEeCCCeEEEEEEEeeeeeecceeeeeeeeeee
Confidence            688999999999997654444678899998764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=8.3e-07  Score=45.88  Aligned_cols=31  Identities=23%  Similarity=0.482  Sum_probs=25.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCc-eEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAA-KIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~   61 (65)
                      ...+.+|+.++|.|.+.+ .|++ .++|||++.
T Consensus        11 ~~~v~~G~~v~l~C~v~g-~P~p~~i~W~k~~~   42 (101)
T d3b5ha1          11 SEHINEGETAMLVCKSES-VPPVTDWAWYKITD   42 (101)
T ss_dssp             EEEECTTSCEEEEEECCC-SSCCCEEEEEECCS
T ss_pred             cEEECcCCeEEEEEEEEe-cCCeeEEEEEeccc
Confidence            457899999999999965 5655 899999763

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.28  E-value=1.1e-06  Score=44.66  Aligned_cols=32  Identities=16%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+.+|+.++|+|.+.+..++..+.||+||+.+
T Consensus        16 ~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~   47 (84)
T d1fnla1          16 SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI   47 (84)
T ss_dssp             EEETTCCEEEEEECCCBTTBCCCEEEETTEEE
T ss_pred             EEeCCCeEEEEEEeccCCCCeEEEEeeeceee
Confidence            68899999999999654444457789999875

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.5e-07  Score=47.98  Aligned_cols=33  Identities=21%  Similarity=0.509  Sum_probs=26.1

Q ss_pred             EEeecCCcEEEEE---EecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLEC---LVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C---~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|..+.+.|   .+ .|+|.|.|+||+||++|.
T Consensus         7 ~~~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~   42 (107)
T d1he7a_           7 VQLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLN   42 (107)
T ss_dssp             CCCCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECC
T ss_pred             eEECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEcc
Confidence            3566777777766   56 578999999999999874

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.2e-07  Score=47.38  Aligned_cols=32  Identities=31%  Similarity=0.669  Sum_probs=27.2

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +..++.++|.|.+.+.+|.. .|+|++||+++.
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~   49 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELP   49 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcC
Confidence            45678899999999998865 899999999864

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.6e-07  Score=47.97  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      ..+.+|++++|.|.+.+  |+|.+.|+++|+++
T Consensus         7 ~~~~~G~~~~l~C~~~g--~~~~v~W~~~g~~l   37 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS--NLARVFWKFQNGVL   37 (92)
T ss_dssp             EEEETTSCEEECCCCSC--TTCEEEEEESSSBC
T ss_pred             eeEeCCCEEEEEEEeec--cCCceeeecCcccc
Confidence            47899999999999865  66799999999876

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.21  E-value=5.3e-08  Score=50.25  Aligned_cols=32  Identities=16%  Similarity=0.275  Sum_probs=27.9

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      +.+.+|+++.|.|..  +.|.+.+.|||||+++.
T Consensus        11 ~~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~   42 (89)
T d1tiua_          11 VEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLT   42 (89)
T ss_dssp             EEEETTSCCCEEEBC--SSSSCCCBCCSSSCCCC
T ss_pred             EEEeCCCcEEEEEEE--CCCCcEEEEEEeeeecc
Confidence            578999999999987  36899999999998764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=9.6e-07  Score=46.75  Aligned_cols=33  Identities=12%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEccC
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELKL   65 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~~   65 (65)
                      ...|+..+|.|.+.|..|.. .|+|++||+++++
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~   49 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK   49 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCC
Confidence            46788999999999998875 7999999998853

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.4e-07  Score=47.36  Aligned_cols=30  Identities=17%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      ..+....+.|.+. |+|.|.|+|||||++|.
T Consensus        14 ~~~~~~~i~~~v~-G~P~P~i~W~~~g~~l~   43 (103)
T d1wwbx_          14 TSDHHWCIPFTVK-GNPKPALQWFYNGAILN   43 (103)
T ss_dssp             CCCCEEEEEEEEE-CSSCCEEEEEETTEEEC
T ss_pred             ccceeEEEEEEEE-EeCCCEEEEEECCEEee
Confidence            3566778999985 68999999999999874

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.9e-06  Score=44.51  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=25.8

Q ss_pred             eEEeecCCcEEEEEEecCCCC---CceEEEEECCE
Q psy7728          30 KIEIRENQEITLECLVKNAKP---AAKIVWYRGNT   61 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~~~   61 (65)
                      .+.+.+|++++|.|.+.+ .|   .+.|.|||++.
T Consensus        13 ~~~v~~G~~v~l~C~v~g-~p~~~~p~v~W~k~~~   46 (110)
T d2avga1          13 DGEVTVGGSITFSARVAG-ASLLKPPVVKWFKGKW   46 (110)
T ss_dssp             CEEEETTSEEEEEEEEEC-CSCSSSCEEEEECSTT
T ss_pred             eEEEECCCCEEEEEeecC-CCCCCCCEEEEEeCce
Confidence            367899999999999976 45   57899999874

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.5e-06  Score=45.85  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=25.2

Q ss_pred             EEeecCCcEEEEEEecCCCC---CceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNAKP---AAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~~~   61 (65)
                      +.+.+|+.++|.|.+.+ .|   .|.|.|||++.
T Consensus        10 ~~v~~G~~v~l~C~v~g-~p~~~~p~v~W~k~~~   42 (113)
T d2dava1          10 GTVKVGEDITFIAKVKA-EDLLRKPTIKWFKGKW   42 (113)
T ss_dssp             CEEETTCCEEEEEEEEC-CCSSSCCEEEEEESSS
T ss_pred             EEEeCCCEEEEEEEEcc-CCCCCCCEEEEEEeec
Confidence            47889999999999976 45   57999999864

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3e-07  Score=47.77  Aligned_cols=30  Identities=20%  Similarity=0.472  Sum_probs=26.1

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +.+.+|++++|.|.+. +.|.+.|.|||++.
T Consensus        14 v~v~~g~~v~L~C~~~-g~p~p~v~W~~~~~   43 (105)
T d1nbqa1          14 VRIPENNPVKLSCAYS-GFSSPRVEWKFDQG   43 (105)
T ss_dssp             CCEETTCCCEEECEEE-SCSSEEEEEEEEET
T ss_pred             EEEeCCCeEEEEEEeC-CCCCCeeEEEeeee
Confidence            4688999999999996 57999999999764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.6e-06  Score=44.83  Aligned_cols=30  Identities=20%  Similarity=0.480  Sum_probs=26.0

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      .+.+.+|++++|.|.+.+ .|.+.|.|||++
T Consensus        10 ~v~v~~G~~v~l~C~~~g-~p~p~v~W~~~~   39 (102)
T d1f97a1          10 DVQVPENESIKLTCTYSG-FSSPRVEWKFVQ   39 (102)
T ss_dssp             EEEEETTCCEEEECEEES-CSSEEEEEEEEE
T ss_pred             cEEEeCCCEEEEEEEcCC-CCCCeEEEEecc
Confidence            357899999999999965 799999999965

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1.7e-06  Score=45.43  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=27.9

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEccC
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELKL   65 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~~   65 (65)
                      ...|+.++|.|.+.+..|.. .|+|++||+++.+
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~   48 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPK   48 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCC
Confidence            45688899999999988874 7999999998753

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.4e-06  Score=46.20  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=28.0

Q ss_pred             EeecCCcEEEEEE-----ecCCCCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECL-----VKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~-----~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+..|....|.|.     ...++|.|.|+|||||+++.
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~   47 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLL   47 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECC
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCcccc
Confidence            5788999999993     23678999999999999874

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.12  E-value=9.5e-07  Score=46.84  Aligned_cols=32  Identities=31%  Similarity=0.549  Sum_probs=27.3

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..|+..+|.|.+.+..|+ ..|+|++||+++.
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~   46 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVA   46 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCC
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeecc
Confidence            4568889999999999876 7899999998763

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.10  E-value=1.3e-06  Score=45.90  Aligned_cols=31  Identities=26%  Similarity=0.492  Sum_probs=26.5

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECCEEccC
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGNTELKL   65 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~~   65 (65)
                      ++..++|.|.+.+..|.. .|+|++|++.+.+
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~   46 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQG   46 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCC
Confidence            456789999999999977 8999999988653

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.08  E-value=2.2e-06  Score=45.37  Aligned_cols=32  Identities=16%  Similarity=0.507  Sum_probs=26.9

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ...|+..+|.|.+.+..|.. .|+|++||+++.
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~   48 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVT   48 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecC
Confidence            45577889999999998864 899999999864

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4e-06  Score=43.56  Aligned_cols=32  Identities=19%  Similarity=0.405  Sum_probs=27.4

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEccC
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELKL   65 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~~   65 (65)
                      ..|+.++|.|.+.|..|. ..|+|++||+.+.+
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   45 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEP   45 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCC
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCC
Confidence            457889999999999987 58999999998753

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=7.5e-06  Score=43.28  Aligned_cols=31  Identities=26%  Similarity=0.598  Sum_probs=26.2

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..++.++|+|.+.+..|. ..|+|++||+++.
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~   48 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLP   48 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECC
Confidence            345679999999998885 7899999999864

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.7e-05  Score=40.79  Aligned_cols=31  Identities=29%  Similarity=0.545  Sum_probs=25.7

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..+..++|.|.+.+..|. ..|+|.+||+.+.
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~   44 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELI   44 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEEC
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeC
Confidence            445689999999998886 5699999998863

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.6e-06  Score=45.52  Aligned_cols=33  Identities=15%  Similarity=0.382  Sum_probs=28.5

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      .+...+|+.+.|.|.+..+.|.+.|+|||+|..
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~   43 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSK   43 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTT
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcc
Confidence            457789999999998877789999999998853

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=6e-06  Score=43.34  Aligned_cols=29  Identities=17%  Similarity=0.456  Sum_probs=25.1

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+.++|.|.+.+..|. ..|+|++||+++.
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~   48 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQE   48 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeecc
Confidence            4678999999999887 6899999999864

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.7e-06  Score=43.56  Aligned_cols=30  Identities=20%  Similarity=0.449  Sum_probs=25.5

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+..++|.|.+.+..|. ..|+|+|||+++.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~   44 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMD   44 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECc
Confidence            45678999999998886 4899999999873

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.7e-06  Score=42.64  Aligned_cols=31  Identities=23%  Similarity=0.485  Sum_probs=25.8

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEccC
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELKL   65 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~~   65 (65)
                      .++.++|.|.+.+..|. ..|+|++||++..+
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~   49 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENN   49 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCC
Confidence            35778999999998885 68999999988653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.89  E-value=9.8e-06  Score=42.62  Aligned_cols=32  Identities=31%  Similarity=0.548  Sum_probs=27.0

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ...|+..+|.|.+.+..|. ..|+|++||+++.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   48 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVT   48 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEEC
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEecc
Confidence            4567788999999999887 5699999999863

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.88  E-value=1e-05  Score=42.56  Aligned_cols=32  Identities=22%  Similarity=0.463  Sum_probs=27.2

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ...++.++|.|.+.+..|. ..|+|++||+.+.
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   46 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVM   46 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEecc
Confidence            4567889999999998885 6799999999873

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.87  E-value=8.7e-06  Score=43.20  Aligned_cols=33  Identities=21%  Similarity=0.363  Sum_probs=27.9

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEEECCEEccC
Q psy7728          33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELKL   65 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~~   65 (65)
                      +..|+..+|.|.+.+..|. ..|+|++||+.+.|
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~   48 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEG   48 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSS
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCC
Confidence            4567888999999999886 67999999998754

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=1.6e-05  Score=41.68  Aligned_cols=29  Identities=14%  Similarity=0.470  Sum_probs=24.5

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+.++|.|.+.+..|. ..|+|++||+++.
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   47 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAE   47 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEcc
Confidence            4568999999998774 6799999999865

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.5e-05  Score=41.69  Aligned_cols=30  Identities=23%  Similarity=0.596  Sum_probs=25.1

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .++.++|.|.+.+..|. ..|+|++||+++.
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVK   49 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECC
Confidence            35678999999998775 4799999999864

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.75  E-value=1.4e-05  Score=41.90  Aligned_cols=29  Identities=28%  Similarity=0.556  Sum_probs=22.7

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ++..+|+|.+.+..|+ ..|+|++||.++.
T Consensus        18 ~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~   47 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGSIEVRWFRNGQEEK   47 (98)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCceEEEEEEeeeECCCcEEEEEECCEEcC
Confidence            4566899999998887 4899999999873

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2e-05  Score=40.91  Aligned_cols=29  Identities=28%  Similarity=0.562  Sum_probs=24.8

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..++|.|.+.+..|. ..|+|++||+.+.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~   44 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQT   44 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECG
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcC
Confidence            4578999999999886 5699999999874

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2e-05  Score=39.95  Aligned_cols=31  Identities=13%  Similarity=0.258  Sum_probs=26.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      +....|++++|.|..  +.|.+.|.|++++..+
T Consensus         5 v~~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i   35 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS--NVPLKEVLWKKQKDKV   35 (93)
T ss_dssp             EEEETTCCEEECCCC--SSCCSCEEEEETTEEE
T ss_pred             EEEEECCCEEEEecC--CCCCcEEEEEEecccc
Confidence            567889999999975  4699999999999765

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=4.2e-05  Score=39.45  Aligned_cols=29  Identities=17%  Similarity=0.224  Sum_probs=24.7

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..++|.|.+.|..|. ..|+|++||+++.
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~   44 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASG   44 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCC
Confidence            4578999999998887 5799999998764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.9e-05  Score=40.65  Aligned_cols=29  Identities=21%  Similarity=0.455  Sum_probs=24.8

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..++|.|.+.+..|. ..|+|++||+++.
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVT   49 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECC
Confidence            4678999999999886 6899999998764

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.3e-05  Score=40.58  Aligned_cols=31  Identities=26%  Similarity=0.524  Sum_probs=25.6

Q ss_pred             ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      ..+..++|.|.+.+..|.. .|+|++||+++.
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~   50 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMD   50 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECC
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEcc
Confidence            3456789999999988876 699999999864

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.62  E-value=1.3e-05  Score=42.10  Aligned_cols=30  Identities=27%  Similarity=0.603  Sum_probs=25.2

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+..++|.|.+.+..|. ..|+|++||+++.
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~   49 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATIN   49 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            35678999999998886 5899999999864

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.61  E-value=2.8e-05  Score=40.59  Aligned_cols=30  Identities=30%  Similarity=0.561  Sum_probs=22.7

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .|+..+|.|.+.+..|. ..|+|++||+++.
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~   45 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEET   45 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcC
Confidence            35667899999999885 7899999998753

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=4.9e-05  Score=40.03  Aligned_cols=29  Identities=17%  Similarity=0.442  Sum_probs=24.9

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..++|.|.+.+..|. ..|+|++||+++.
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQ   49 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            5678999999998887 6899999998764

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.50  E-value=6.1e-05  Score=38.87  Aligned_cols=29  Identities=21%  Similarity=0.447  Sum_probs=24.5

Q ss_pred             CCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +..++|.|.+.+..|.. .|+|++||+.+.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~   44 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLS   44 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcC
Confidence            45689999999988874 799999999864

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.49  E-value=0.00013  Score=38.48  Aligned_cols=31  Identities=26%  Similarity=0.532  Sum_probs=25.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|...+......+.|||.
T Consensus         6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq   36 (115)
T d2atpb1           6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRE   36 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSCCSSEEEEEEE
T ss_pred             CcEEEcCCCCEEEEEEEeCCCCCCceEEEEe
Confidence            3467899999999999876555678999984

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=6.2e-05  Score=39.55  Aligned_cols=29  Identities=28%  Similarity=0.488  Sum_probs=25.0

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +..++|.|.+.+..|. ..|+|++||+.+.
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQS   49 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            5678999999998886 5899999998764

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.44  E-value=7.6e-05  Score=38.89  Aligned_cols=30  Identities=20%  Similarity=0.491  Sum_probs=25.2

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      .+..++|.|.+.+..|. ..|+|++||++..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL   48 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEcc
Confidence            35678999999998886 6899999998754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00022  Score=37.73  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|.|...++.....+.|||.
T Consensus         7 ~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq   37 (114)
T d3bp5a1           7 AWLTVSEGANATFTCSLSNWSEDLMLNWNRL   37 (114)
T ss_dssp             SEEEEETTCCEEEEEEESCCCTTCEEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCCCCcceEEEEEE
Confidence            3467899999999998766555567999983

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.40  E-value=0.0002  Score=37.65  Aligned_cols=30  Identities=27%  Similarity=0.527  Sum_probs=23.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+......|.|||.
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ   36 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQ   36 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEE
Confidence            467899999999998755444456999994

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.40  E-value=5.2e-05  Score=40.68  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=25.8

Q ss_pred             eecCCcEEEEEEecCCCCC---ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA---AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~---~~i~W~~~~~~l~   64 (65)
                      +..+..++|.|.+.+..|.   ..|+|++||.++.
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~   63 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVH   63 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECS
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccC
Confidence            3457888999999887673   5799999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.36  E-value=0.00023  Score=37.39  Aligned_cols=30  Identities=20%  Similarity=0.472  Sum_probs=23.6

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|..........+.|||.
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq   36 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQ   36 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEE
Confidence            357899999999998755445567999983

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00049  Score=35.33  Aligned_cols=39  Identities=13%  Similarity=0.075  Sum_probs=29.7

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +|.|...+..   .+..|++|+|.|++.  .+...+.|||+|..
T Consensus         4 KPsLsa~P~~---~V~~G~~VTL~C~~~--~~~~~f~L~k~g~~   42 (95)
T d1olla1           4 KPFIWAEPHF---MVPKEKQVTICCQGN--YGAVEYQLHFEGSL   42 (95)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEECC--TTCCEEEEEETTEE
T ss_pred             CCEEEeeCCC---cccCCCcEEEEEecC--CCccEEEEEECCCC
Confidence            4566665543   578999999999874  46788999999864

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0001  Score=39.06  Aligned_cols=29  Identities=17%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +.+.+|++++|.|....+.....|.|||.
T Consensus        10 ~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ   38 (114)
T d1akjd_          10 RTWNLGETVELKCQVLLSNPTSGCSWLFQ   38 (114)
T ss_dssp             CCCCTTCCEEEEEEECCSSCCSCEEEEEE
T ss_pred             EeccCCCcEEEEEEeCCCcCCCCEEEEEE
Confidence            36789999999999877666667999994

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=7.1e-05  Score=39.12  Aligned_cols=31  Identities=13%  Similarity=0.432  Sum_probs=24.6

Q ss_pred             ecCCcEEEEEEecCCCCC---ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA---AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~---~~i~W~~~~~~l~   64 (65)
                      ..+...+|+|.+.+..|.   .+|+|++||.++.
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~   47 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVH   47 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEEC
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCcccc
Confidence            346678999999887775   4899999998754

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.29  E-value=5.3e-05  Score=39.64  Aligned_cols=28  Identities=21%  Similarity=0.595  Sum_probs=23.0

Q ss_pred             CCcEEEEEEecCCCCCc-eEEEEECCEEc
Q psy7728          36 NQEITLECLVKNAKPAA-KIVWYRGNTEL   63 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~-~i~W~~~~~~l   63 (65)
                      ...++|.|.+.+..|.. .|+|++||+.+
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~   42 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGG   42 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSS
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccc
Confidence            34689999999998875 69999998654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00021  Score=36.80  Aligned_cols=37  Identities=14%  Similarity=0.043  Sum_probs=28.2

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      +|.|...+..   .+..|++|+|.|.+.  .+...+.|||+|
T Consensus         7 kPsLsa~P~~---~V~~G~~VTL~C~~~--~~~~~f~l~k~g   43 (99)
T d1ucta1           7 MPFISAKSSP---VIPLDGSVKIQCQAI--REAYLTQLMIIK   43 (99)
T ss_dssp             CCCEEESSCS---EEETTCCEEEEECCC--TTCSEEEEEEEE
T ss_pred             CCEEEecCCC---ceeCCCeEEEEEcCC--CCCcEEEEEECC
Confidence            4566665542   578899999999864  578899999976

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00017  Score=36.55  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=20.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWY   57 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~   57 (65)
                      .+.+.+|++++|.|.+.+ .|.|.+.|+
T Consensus        10 ~~~v~~G~~v~l~C~~~g-~p~p~~~~~   36 (96)
T d2c9aa1          10 NVEVNAGQFATFQCSAIG-RTVAGDRLW   36 (96)
T ss_dssp             CEEECSSSCEEEEEEEES-CCCSSCEEE
T ss_pred             CEEEeCCCEEEEEEEEee-cCCCcEEEE
Confidence            368899999999999965 576665543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.20  E-value=0.00029  Score=36.99  Aligned_cols=31  Identities=19%  Similarity=0.639  Sum_probs=24.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|.|....+.....+.|||.
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ   37 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQ   37 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEe
Confidence            4568999999999998655555567999983

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.19  E-value=0.00036  Score=36.62  Aligned_cols=30  Identities=23%  Similarity=0.743  Sum_probs=23.5

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      ..+.+.+|++++|+|....+.....+.|||
T Consensus         8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyr   37 (114)
T d2ak4d1           8 TEISVVEKEDVTLDCVYETRDTTYYLFWYK   37 (114)
T ss_dssp             CEEEEETTCCEEECCEEECSCSSCEEEEEE
T ss_pred             CeEEEeCCCCEEEEEEEcCCCcCccEEEEE
Confidence            456789999999999865544455789998

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.17  E-value=0.00058  Score=35.98  Aligned_cols=31  Identities=19%  Similarity=0.514  Sum_probs=24.8

Q ss_pred             CeEEeecCCcEEEEEEecCC-CCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNA-KPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~   59 (65)
                      ..+...+|++++|+|...++ .....+.|||.
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq   39 (113)
T d1vesa_           8 RTATKETGESLTINCVLRDASFELKDTGWYRT   39 (113)
T ss_dssp             SEEEECTTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCccceeee
Confidence            35678999999999988754 35678999984

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.17  E-value=0.00028  Score=37.33  Aligned_cols=29  Identities=21%  Similarity=0.556  Sum_probs=24.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      .+.+.+|+.++|.|..........+.|||
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           9 DQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             CEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             CEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            45789999999999876666667899998

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=0.00015  Score=39.13  Aligned_cols=31  Identities=26%  Similarity=0.578  Sum_probs=25.7

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      ..+..++|.|.+.+..|. ..|+|++||+++.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~   49 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVH   49 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEcc
Confidence            446778999999998885 5799999999764

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.12  E-value=0.00047  Score=36.17  Aligned_cols=32  Identities=19%  Similarity=0.540  Sum_probs=24.8

Q ss_pred             CCCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          27 SNSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        27 ~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+..+.+.+|++++|+|...++. ...+.|||.
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~-~~~~~WYrQ   38 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDI-YSRLAWYQQ   38 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCC-TTCEEEEEE
T ss_pred             eCCEEEECCCCCEEEEEecCCCc-ccccEEEEc
Confidence            34567899999999999876543 457999983

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.11  E-value=0.00041  Score=36.22  Aligned_cols=32  Identities=19%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +..+.+.+|+.++|+|..........+.|||.
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq   39 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQ   39 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEec
Confidence            45578899999999998754434557999985

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.08  E-value=0.00017  Score=37.89  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~   64 (65)
                      +..+..++|.|.+.+..|.. .|+|++||+.+.
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~   53 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTI   53 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCC
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEcc
Confidence            45567899999999988874 699999997653

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.07  E-value=0.00027  Score=36.09  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             CcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728          37 QEITLECLVKNAKPA-AKIVWYRGNTELK   64 (65)
Q Consensus        37 ~~~~L~C~~~~~~P~-~~i~W~~~~~~l~   64 (65)
                      +.++|.|.+.+..|. ..|+|.+||+.+.
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~   42 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITE   42 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEcc
Confidence            445899999999886 5699999998754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.06  E-value=0.00078  Score=35.62  Aligned_cols=31  Identities=19%  Similarity=0.618  Sum_probs=24.3

Q ss_pred             CeEEeecCCcEEEEEEecCC-CCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNA-KPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~   59 (65)
                      ..+...+|+.++|+|...+. .....+.|||.
T Consensus         7 ~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq   38 (112)
T d1sq2n_           7 RSVTKETGESLTINCVLRDASYALGSTCWYRK   38 (112)
T ss_dssp             SEEEECTTCCEEEEEEECSCSSCCCCEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCceEEEEe
Confidence            34678899999999987554 35678999983

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.0011  Score=34.56  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             EEeecCCcEEEEEEecCC--CCCceEEEEECCE
Q psy7728          31 IEIRENQEITLECLVKNA--KPAAKIVWYRGNT   61 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~--~P~~~i~W~~~~~   61 (65)
                      +.+..|++++|.|.....  .....|.||+++.
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~   44 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPF   44 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCC
Confidence            467889999999986432  2335699999753

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=2.3e-05  Score=41.92  Aligned_cols=31  Identities=16%  Similarity=0.429  Sum_probs=24.8

Q ss_pred             eecCCcEEEEEEecCCCCC---ceEEEEECCEEc
Q psy7728          33 IRENQEITLECLVKNAKPA---AKIVWYRGNTEL   63 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~---~~i~W~~~~~~l   63 (65)
                      +..+..++|+|.+.+..|.   .+++|++|+.++
T Consensus        26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~   59 (116)
T d1igyb3          26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEV   59 (116)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCB
T ss_pred             cccCCCcEEEEEEecEeCCCCEEEEEECcCCeEc
Confidence            4557889999999998885   367899998764

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0003  Score=36.56  Aligned_cols=32  Identities=19%  Similarity=0.466  Sum_probs=25.7

Q ss_pred             eecCCcEEEEEEecCCCCC---ceEEEEECCEEcc
Q psy7728          33 IRENQEITLECLVKNAKPA---AKIVWYRGNTELK   64 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~---~~i~W~~~~~~l~   64 (65)
                      +..++.++|.|.+.+..|.   ..++|.+||.++.
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~   49 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH   49 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEEC
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECC
Confidence            3456788999999987775   5788999998764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.98  E-value=0.00043  Score=36.21  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=23.5

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|.... .....+.|||.
T Consensus         8 ~~l~~~~G~svtl~C~~s~-~~~~~~~WYrq   37 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQ-DIKKYIGWYQH   37 (106)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCC-CCCCCeEEEEC
Confidence            4567899999999998743 44556999983

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.97  E-value=0.00064  Score=35.82  Aligned_cols=30  Identities=17%  Similarity=0.470  Sum_probs=24.3

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|....+ ....+.|||.
T Consensus         9 ~~v~v~~G~~vtL~C~~~~~-~~~~i~Wyrq   38 (115)
T d1lp9e1           9 GLVTLTEGLPVMLNCTYQST-YSPFLFWYVQ   38 (115)
T ss_dssp             SEEEEETTSCEEECEEEECS-SSCCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEeCC-CcCCeeEEEe
Confidence            35688999999999997654 4567999984

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.95  E-value=0.00085  Score=35.13  Aligned_cols=31  Identities=16%  Similarity=0.588  Sum_probs=24.2

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +..+.+.+|+.++|+|...+. ....+.|||.
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~-~~~~~~Wyrq   37 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDS-AIYNLQWFRQ   37 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCC-CEEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEecC-cccCCeEEEe
Confidence            345688999999999997654 4467999983

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.94  E-value=0.0011  Score=34.88  Aligned_cols=31  Identities=13%  Similarity=0.292  Sum_probs=23.1

Q ss_pred             CeEEeecCCcEEEEEEecCCC---CCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAK---PAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~---P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+.   ....+.|||.
T Consensus         9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            456889999999999875432   2334999984

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.94  E-value=0.0011  Score=34.67  Aligned_cols=28  Identities=21%  Similarity=0.514  Sum_probs=22.7

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      ..+.+.+|+.++|.|....+.  ..+.|||
T Consensus         7 ~~~~~~~G~svtl~C~~~~~~--~~~~WYr   34 (113)
T d2ntsp1           7 RYLIKTRGQQVTLSCSPISGH--RSVSWYQ   34 (113)
T ss_dssp             SEEEEETTCCEEEEEECSTTC--CEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCCC--CEEEEEE
Confidence            346789999999999875543  5799999

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.94  E-value=0.0011  Score=34.38  Aligned_cols=31  Identities=16%  Similarity=0.496  Sum_probs=24.3

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +..+.+.+|++++|+|....+ ....+.|||.
T Consensus         8 P~~l~v~~G~svtl~C~~s~~-~~~~~~WYrq   38 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASEN-VGTYVSWYQQ   38 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CCEEeECCCCCEEEEEEecCC-cCCceEEEEc
Confidence            345688999999999987653 4457999984

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.93  E-value=0.0011  Score=34.49  Aligned_cols=29  Identities=24%  Similarity=0.525  Sum_probs=23.1

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|...++  ...+.|||.
T Consensus         9 ~~~~~~~G~~vtl~C~~s~~--~~~~~WYrQ   37 (110)
T d2aq2a1           9 RNKVAVTGEKVTLSCQQTNN--HNNMYWYRQ   37 (110)
T ss_dssp             SEEEECTTCCEEEEEEESSC--CSEEEEEEE
T ss_pred             CeEEEcCCCCEEEEEEECCC--cCcEEEEEE
Confidence            34678999999999987654  457999993

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00014  Score=37.87  Aligned_cols=30  Identities=13%  Similarity=0.579  Sum_probs=22.9

Q ss_pred             ecCCcEEEEEEecCCCCCc--eEEEEECCEEc
Q psy7728          34 RENQEITLECLVKNAKPAA--KIVWYRGNTEL   63 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~--~i~W~~~~~~l   63 (65)
                      ..++.++|.|.+.+..|+.  .+.|++|++.+
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~   48 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI   48 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcC
Confidence            3467899999999987764  57888887654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.93  E-value=0.0014  Score=33.85  Aligned_cols=38  Identities=13%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|.+...+..   .+..|++|+|.|++.  .+...+.|||+|.
T Consensus         6 kPsLsa~P~~---~V~~G~~VTL~C~~~--~~~~~f~L~k~g~   43 (99)
T d1nkra2           6 KPSLSAQPGP---TVLAGENVTLSCSSR--SSYDMYHLSREGE   43 (99)
T ss_dssp             CCEEEEESCS---EECTTCEEEEEEEES--SCCSEEEEEETTC
T ss_pred             CCEEEEeCCC---cccCCCeEEEEECCC--CCccEEEEEECCC
Confidence            4566665543   678999999999874  4788999999984

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.93  E-value=0.00098  Score=34.81  Aligned_cols=30  Identities=13%  Similarity=0.594  Sum_probs=23.4

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+ ....+.|||.
T Consensus         9 ~slsv~~G~svtl~C~~s~~-~~~~~~WYrQ   38 (106)
T d1i8ka_           9 ASLSVATGEKVTIRCMTSTD-IDDDMNWYQQ   38 (106)
T ss_dssp             SEEECCTTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCC-CCccEEEEeC
Confidence            45688999999999987543 3457999974

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00068  Score=36.15  Aligned_cols=28  Identities=21%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      .+.+.+|++++|+|...+ .....+.|||
T Consensus        10 ~~~~~~G~~vtL~C~~~~-~~~~~v~Wyr   37 (122)
T d1nezg_          10 KMDAELGQKVDLVCEVLG-SVSQGCSWLF   37 (122)
T ss_dssp             CEEECTTCCEEEEEEEES-CCSSCEEEEE
T ss_pred             EEEECCCCCEEEEEEEcC-ccCCCEEEEE
Confidence            467899999999998865 3566899998

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.92  E-value=0.00089  Score=35.03  Aligned_cols=32  Identities=9%  Similarity=0.426  Sum_probs=24.2

Q ss_pred             CCCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          27 SNSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        27 ~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+..+.+.+|++++|+|.... .-...+.|||.
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~-~~~~~~~WYrQ   38 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQ-NVGTNVAWFQQ   38 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESS-CCTTCEEEEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCC-CCCCceEEEec
Confidence            344578899999999998643 33457999984

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.91  E-value=0.0012  Score=34.71  Aligned_cols=30  Identities=13%  Similarity=0.415  Sum_probs=23.8

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|.... .....+.|||.
T Consensus         9 ~s~~~~~G~svtl~C~~s~-~~~~~~~Wyrq   38 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQ-EISGYLSWLQQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCC-CCCCCEEEEEc
Confidence            4567899999999998754 35567999983

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.90  E-value=0.0011  Score=34.76  Aligned_cols=30  Identities=27%  Similarity=0.587  Sum_probs=24.4

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|.|.... .+...+.|||.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~-~~~~~~~Wyrq   37 (114)
T d2cdea1           8 QSLIILEGKNCTLQCNYTV-SPFSNLRWYKQ   37 (114)
T ss_dssp             SEEEEETTCCCEEEEEECC-SCCSEEEEEEE
T ss_pred             CEEEEeCCCCEEEEEEEcC-CCccCceEEEe
Confidence            4568899999999999765 45678999984

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0015  Score=33.59  Aligned_cols=39  Identities=10%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|.+...+..   .+..|++++|.|++.. .+.-.+.|||+|+
T Consensus         5 kP~Lsa~P~~---~V~~G~~VTL~C~~~~-~~~~~f~L~k~g~   43 (96)
T d1ucta2           5 KPFLSADRGL---VLMPGENISLTCSSAH-IPFDRFSLAKEGE   43 (96)
T ss_dssp             CCEEEESSCS---EECTTCCCEEEEECSS-SCCSEEEEEETTC
T ss_pred             CCEEEEeCCC---ccCCCCeEEEEEeCCC-CCceEEEEEECCc
Confidence            4567666653   6899999999998632 2445789999985

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.87  E-value=0.0013  Score=34.25  Aligned_cols=29  Identities=14%  Similarity=0.615  Sum_probs=23.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|+.++|+|...++ -...+.|||.
T Consensus         9 s~~~~~G~svtL~C~~s~~-~~~~~~WYrq   37 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASES-VTSRMHWYQQ   37 (106)
T ss_dssp             EEEECTTSCEEEEEEESSC-CTTCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCC-CCccEEEEec
Confidence            3678999999999998654 4567999984

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00096  Score=34.77  Aligned_cols=28  Identities=25%  Similarity=0.507  Sum_probs=21.9

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          33 IRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +.+|++++|.|....+ ....+.|||+..
T Consensus        11 v~~G~~V~L~c~~~p~-~~~~~~W~k~~~   38 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPL-ALGAFAWYKGNT   38 (107)
T ss_dssp             CCTTCCEEEEEESCCT-TCSEEEEEESSC
T ss_pred             ccCCCCEEEEecCCCC-CceEEEEEeCcc
Confidence            6799999999985433 367899999753

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.87  E-value=0.0013  Score=34.26  Aligned_cols=30  Identities=20%  Similarity=0.495  Sum_probs=23.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|...++. ...+.|||.
T Consensus         8 ~sl~~~~G~svtL~C~~~~~~-~~~~~WYrq   37 (106)
T d1op3k1           8 STLSASVGDTITITCRASQSI-ETWLAWYQQ   37 (106)
T ss_dssp             SEEEECTTCEEEEEEEESSCC-TTCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCC-CCcEEEEec
Confidence            456889999999999876543 456999985

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.87  E-value=0.00096  Score=35.03  Aligned_cols=31  Identities=16%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             CeEEeecCCcEEEEEEecCCCC---CceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKP---AAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|....+.+   ...+.|||.
T Consensus         9 ~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq   42 (111)
T d1j05a_           9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeccCCccCCceeEEEEEc
Confidence            4567899999999998754332   234999984

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.85  E-value=0.0013  Score=34.44  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=23.7

Q ss_pred             CeEEeecCCcEEEEEEecCCCCC--ceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPA--AKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|...++...  ..|.|||.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ   40 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQ   40 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeee
Confidence            35688999999999997665332  35999984

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.85  E-value=0.0013  Score=34.93  Aligned_cols=30  Identities=17%  Similarity=0.470  Sum_probs=23.8

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|.|...+.. ....+.|||.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ   39 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQ   39 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEEC
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceee
Confidence            35788999999999976554 4567999985

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.84  E-value=0.0012  Score=34.86  Aligned_cols=29  Identities=24%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|.|....+  ...+.|||.
T Consensus         8 ~~~~~~~G~svtl~C~~s~~--~~~~~WYrQ   36 (115)
T d1ogad1           8 QFLSIQEGENLTVYCNSSSV--FSSLQWYRQ   36 (115)
T ss_dssp             SEEEEETTCCEEEEEECSSC--CSCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCC--CceEEEEec
Confidence            45688999999999987654  457999983

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.84  E-value=0.0015  Score=34.13  Aligned_cols=29  Identities=31%  Similarity=0.573  Sum_probs=22.7

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+  ...+.|||.
T Consensus         7 ~~~~~~~G~svtl~C~~~~~--~~~~~WYrQ   35 (111)
T d2esve1           7 SHSVIEKGQTVTLRCDPISG--HDNLYWYRR   35 (111)
T ss_dssp             SEEEEETTCCEEEEEECCTT--CSEEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCC--CceEEEEEE
Confidence            34578999999999986543  458999984

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.83  E-value=0.0014  Score=34.37  Aligned_cols=31  Identities=19%  Similarity=0.496  Sum_probs=24.4

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +..+.+.+|+.++|+|....+ ....+.|||.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~-~~~~~~WYrq   38 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKS-ISKSLAWYQE   38 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CCeEEecCCCCEEEEEEccCC-cCCceEEEEc
Confidence            345678999999999988654 4557999984

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.82  E-value=0.0016  Score=33.98  Aligned_cols=28  Identities=18%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|....+  -..|.|||.
T Consensus         8 ~~~~~~G~svtl~C~~~~~--~~~i~WYrQ   35 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPISG--HVSLFWYQQ   35 (112)
T ss_dssp             EEEEETTCCEEEEEECCTT--CCEEEEEEE
T ss_pred             eEEECCCCCEEEEEEECCC--CCEEEeeee
Confidence            4578999999999986544  458999993

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.81  E-value=0.0016  Score=33.98  Aligned_cols=30  Identities=13%  Similarity=0.410  Sum_probs=23.7

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+ ....+.|||.
T Consensus         9 ~sl~~~~G~svtl~C~~s~~-~~~~~~WYrq   38 (107)
T d1d5il1           9 SSMYASLGERVTITCKASQD-INSYLSWFQQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCC-CCCccceeEe
Confidence            45678999999999987543 4567999984

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.80  E-value=0.0014  Score=34.43  Aligned_cols=31  Identities=6%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CeEEeecCCcEEEEEEecCCC----CCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAK----PAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~----P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|...++.    -...+.|||.
T Consensus         9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq   43 (112)
T d1mjul1           9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQ   43 (112)
T ss_dssp             SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCCCceeEEEEC
Confidence            456789999999999876542    2456999984

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.80  E-value=0.0018  Score=33.89  Aligned_cols=29  Identities=21%  Similarity=0.590  Sum_probs=23.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|....+  ...+.|||.
T Consensus         9 ~~~~v~~G~~vtl~C~~~~~--~~~~~WYrQ   37 (113)
T d1h5ba_           9 SALSLHEGTDSALRCNFTTT--MRSVQWFRQ   37 (113)
T ss_dssp             SEEEEETTCCEEEEEEESSC--CSEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEecC--CccceEEEe
Confidence            35678999999999997654  457999993

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.78  E-value=0.0021  Score=33.93  Aligned_cols=29  Identities=17%  Similarity=0.576  Sum_probs=23.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|...+. ....+.|||.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~-~~~~~~WYrQ   38 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLDT-NIHTMFWYRQ   38 (118)
T ss_dssp             EEEECTTCCEEEEEEECSS-CCSEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEcCC-cccEEEEEEE
Confidence            4578999999999987554 4568999984

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.77  E-value=0.0017  Score=33.73  Aligned_cols=30  Identities=13%  Similarity=0.553  Sum_probs=23.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+ --..+.|||.
T Consensus         9 ~~l~v~~G~~vtL~C~~~~~-~~~~~~WYrq   38 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQS-IGNNLHWYQQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCC-CCcceEEEEe
Confidence            45689999999999987543 3457999984

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.75  E-value=0.0018  Score=33.72  Aligned_cols=31  Identities=23%  Similarity=0.551  Sum_probs=24.4

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +..+.+.+|+.++|+|....+ -...+.|||.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~-~~~~~~WYrq   38 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQG-VTSALAWYRQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCC-CCccEEEEec
Confidence            345688999999999998643 3568999984

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.74  E-value=0.0014  Score=34.39  Aligned_cols=30  Identities=20%  Similarity=0.509  Sum_probs=24.2

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      +..+.+.+|+.++|+|....+ -...+.|||
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~-~~~~i~WYr   36 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSS-VPPYLFWYV   36 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECS-SCCEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEeCCC-CceeEEEEE
Confidence            345789999999999987653 456799998

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.72  E-value=0.0019  Score=33.75  Aligned_cols=30  Identities=17%  Similarity=0.515  Sum_probs=23.1

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|...++. ....+.|||.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq   39 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQ   39 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceee
Confidence            46889999999999875543 3456999984

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0028  Score=32.48  Aligned_cols=38  Identities=18%  Similarity=0.338  Sum_probs=29.0

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|.|...+..   .+..|++|+|.|++.  .+...+.+||+|.
T Consensus         4 kP~Lsa~Ps~---~V~~G~~VTL~C~~~--~~~~~f~L~keg~   41 (96)
T d1ugna1           4 KPTLWAEPGS---VITQGSPVTLRCQGG--QETQEYRLYREKK   41 (96)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEECC--TTCCCEEEEESSS
T ss_pred             CCEEEeECCC---ccCCCCcEEEEEeCC--CCCCEEEEEECCC
Confidence            4566655542   578999999999963  5778899999875

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.70  E-value=0.0018  Score=34.43  Aligned_cols=30  Identities=27%  Similarity=0.476  Sum_probs=23.1

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|...+.. -...+.|||.
T Consensus        10 sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ   40 (120)
T d1hxma1          10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRK   40 (120)
T ss_dssp             EEEEETTCCEEEEEEECSSCGGGSEEEEEEE
T ss_pred             CEEECCCCCEEEEEEEeccCccCCcCeEEEc
Confidence            45789999999999986543 2356999983

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.70  E-value=0.0022  Score=33.41  Aligned_cols=30  Identities=23%  Similarity=0.546  Sum_probs=23.8

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|...++. ...+.|||.
T Consensus         9 ~~~~~~~G~~vtL~C~~~~~~-~~~~~WYrQ   38 (112)
T d1fo0b_           9 RWRLVPRGQAVNLRCILKNSQ-YPWMSWYQQ   38 (112)
T ss_dssp             SEEECCTTCCEEEEEEESCTT-CCEEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEecCC-CCcEEEEeE
Confidence            345789999999999876653 357999995

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.69  E-value=0.0018  Score=33.84  Aligned_cols=29  Identities=24%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+  ...+.|||.
T Consensus         7 ~~~~~~~G~svtl~C~~s~~--~~~~~WYrQ   35 (112)
T d2bnub1           7 KFQVLKTGQSMTLQCAQDMN--HEYMSWYRQ   35 (112)
T ss_dssp             SEEEEETTCCEEEEEEESSC--CSEEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEECC--ccceEeccc
Confidence            34578999999999987654  457999983

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0023  Score=32.74  Aligned_cols=38  Identities=13%  Similarity=0.349  Sum_probs=28.7

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|.|...+..   .+..|++|+|.|++.  .+.-.+.|||+|.
T Consensus         4 kPsLsa~P~~---~V~~G~~VTL~C~~~--~~~~~f~L~Keg~   41 (93)
T d1olla2           4 TPTLSVHPGP---EVISGEKVTFYCRLD--TATSMFLLLKEGR   41 (93)
T ss_dssp             CCEEEEESCS---EEETTCEEEEEEECS--SSCSEEEEEEESS
T ss_pred             CCEEEEeCCC---cccCCCcEEEEECCC--CCCCEEEEEECCC
Confidence            3566655542   688899999999874  4678899999874

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.67  E-value=0.0011  Score=34.55  Aligned_cols=30  Identities=13%  Similarity=0.479  Sum_probs=23.5

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|...++. ....+.|||.
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ   39 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQ   39 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeee
Confidence            46889999999999876543 3345999984

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.65  E-value=0.00098  Score=34.44  Aligned_cols=29  Identities=17%  Similarity=0.517  Sum_probs=22.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|..... ....+.|||.
T Consensus         7 sl~~~~G~svtl~C~~~~~-~~~~~~WYrQ   35 (103)
T d8faba1           7 SVSVSPGQTARITCSANAL-PNQYAYWYQQ   35 (103)
T ss_dssp             EEEECTTSCEEEEEECTTG-GGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCC-CCCCEEEEEc
Confidence            4678999999999987543 3457999984

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.64  E-value=0.0014  Score=34.26  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             CCeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +..+.+.+|++++|+|....  ....+.|||.
T Consensus         6 P~~~~~~~G~svtl~C~~s~--~~~~~~WYrQ   35 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQNL--NHDAMYWYRQ   35 (114)
T ss_dssp             CSEEEEETTCCEEECCEECS--CCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEEec--CCCcEEEEee
Confidence            34568899999999999753  3468999984

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.63  E-value=0.0031  Score=32.73  Aligned_cols=30  Identities=20%  Similarity=0.491  Sum_probs=23.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|.|...++ ....+.|||.
T Consensus         8 ~s~~~~~G~svtl~C~~s~~-~~~~~~WYrq   37 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNS-MFDYFLWYKK   37 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCT-TCCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCC-CCCeEEEEEE
Confidence            45678999999999987554 4457999984

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.60  E-value=0.0019  Score=33.27  Aligned_cols=30  Identities=20%  Similarity=0.504  Sum_probs=23.1

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|....+ -...+.|||.
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~-~~~~~~WYrq   36 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENS-AFDYFPWYQQ   36 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCT-TEEEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEecCC-CCcEEEEEee
Confidence            34678999999999987543 3356999984

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.58  E-value=0.0029  Score=33.11  Aligned_cols=30  Identities=13%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+ .-..+.|||.
T Consensus         9 ~~l~~~~G~svtL~C~~s~~-~~~~i~WYrQ   38 (109)
T d1mqkl_           9 VSLSASVGETVTITCRASEN-IYSYLAWYQQ   38 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCC-cCcccceeec
Confidence            45678999999999987543 3456999993

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0009  Score=34.62  Aligned_cols=31  Identities=23%  Similarity=0.516  Sum_probs=24.2

Q ss_pred             eecCCcEEEEEEecCCCCC---ceEEEEECCEEc
Q psy7728          33 IRENQEITLECLVKNAKPA---AKIVWYRGNTEL   63 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~~P~---~~i~W~~~~~~l   63 (65)
                      +..+..++|+|.+.+..|.   ..+.|++++.+.
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~   46 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKP   46 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCC
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCcee
Confidence            3446778999999998886   478899988654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.54  E-value=0.0034  Score=32.98  Aligned_cols=31  Identities=10%  Similarity=0.342  Sum_probs=23.6

Q ss_pred             CeEEeecCCcEEEEEEecCC----CCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNA----KPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~----~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|...++    .....+.|||.
T Consensus        10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_          10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            35678999999999987543    23457999984

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00095  Score=34.81  Aligned_cols=30  Identities=17%  Similarity=0.438  Sum_probs=23.9

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTEL   63 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l   63 (65)
                      .....++|.|.+.+..|. ..|+|.+||+.+
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~   49 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSD   49 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccc
Confidence            345778999999999886 679999998654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.0018  Score=34.15  Aligned_cols=28  Identities=14%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             EEeecCCcEEEEEEecCCCCC--ceEEEEE
Q psy7728          31 IEIRENQEITLECLVKNAKPA--AKIVWYR   58 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~--~~i~W~~   58 (65)
                      +.+.+|++++|.|....+...  -.+.|||
T Consensus        10 lsvs~G~tvtl~C~~s~~~~~~~~~v~Wyr   39 (110)
T d1oaql_          10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQ   39 (110)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEE
T ss_pred             EEeCCCCCEEEEEEEcCCCCcceeeeEEEE
Confidence            578999999999998654433  2399998

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.51  E-value=0.00085  Score=35.07  Aligned_cols=28  Identities=14%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +.+.+|++++|+|.... .....+.|||.
T Consensus        11 ~~~~~G~~vtl~C~~s~-~~~~~~~WYrq   38 (107)
T d3cx5k1          11 LAASLGDRVTISCRASQ-DINNFLNWYQQ   38 (107)
T ss_dssp             CCBCSSSCCEEEEEESS-CCTTCEEEEEE
T ss_pred             EEECCCCCEEEEEEcCC-CcCCCeEEEEc
Confidence            56899999999998754 45567999984

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.49  E-value=0.0036  Score=32.53  Aligned_cols=30  Identities=17%  Similarity=0.447  Sum_probs=23.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|...++ -...+.|||.
T Consensus        11 ~~l~~~~G~svtL~C~~s~~-~~~~~~WYrq   40 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQD-IIKYLNWYQQ   40 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSC-CTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEecCC-CCCcceEeee
Confidence            45688999999999998654 3457899984

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.45  E-value=0.00035  Score=36.84  Aligned_cols=27  Identities=19%  Similarity=0.612  Sum_probs=22.3

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCE
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNT   61 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~   61 (65)
                      .+..++|.|.+.+..|. ..|+|.+|+.
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~   53 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEP   53 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCC
Confidence            35678999999999885 7899998863

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.44  E-value=0.0021  Score=33.74  Aligned_cols=31  Identities=16%  Similarity=0.521  Sum_probs=22.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCC-----CceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKP-----AAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P-----~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|.|...++..     ...+.|||.
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq   44 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQ   44 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEec
Confidence            3467899999999998754421     234999984

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.40  E-value=0.0032  Score=32.47  Aligned_cols=29  Identities=14%  Similarity=0.518  Sum_probs=22.6

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+  ...+.|||.
T Consensus         8 ~~l~~~~G~~vtl~C~~s~~--~~~~~WYrQ   36 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASSS--VNYMYWYQQ   36 (104)
T ss_dssp             SEEEECTTCCEEEEEEESSC--CSCCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCC--CCccEEEEe
Confidence            45678999999999986443  456899984

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.37  E-value=0.007  Score=30.99  Aligned_cols=38  Identities=13%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|.|...+..   .+..|++++|.|++.  .....+.+||+|.
T Consensus         2 KPsLsa~P~~---~V~~G~~VTl~C~~~--~~~~~f~L~keg~   39 (96)
T d1nkra1           2 KPSLLAHPGP---LVKSEETVILQCWSD--VMFEHFLLHREGM   39 (96)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEEES--SCCSEEEEEEESS
T ss_pred             CCEEEeeCCC---ccCCCCcEEEEECCC--CCCCEEEEEECCC
Confidence            4566655542   688999999999974  4678899999764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.33  E-value=0.0038  Score=32.56  Aligned_cols=29  Identities=17%  Similarity=0.587  Sum_probs=23.3

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      ..+.+.+|++++|+|....+ ....+.|||
T Consensus         8 ~~v~v~~G~svtl~C~~~~~-~~~~~~Wyr   36 (115)
T d1i9ea_           8 ARVTVSEGASLQLRCKYSYS-ATPYLFWYV   36 (115)
T ss_dssp             SEEEEETTSCEEECCEEECS-SCCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEcCC-CCCCEEEEE
Confidence            34688999999999987654 356789998

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.32  E-value=0.0041  Score=32.64  Aligned_cols=31  Identities=13%  Similarity=0.263  Sum_probs=22.9

Q ss_pred             CeEEeecCCcEEEEEEecCCC----CCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAK----PAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~----P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|....+.    .-..+.||+.
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            456889999999999865432    2345999984

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.31  E-value=0.0025  Score=33.22  Aligned_cols=29  Identities=24%  Similarity=0.587  Sum_probs=22.5

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|++++|+|....+  ...+.|||.
T Consensus         8 ~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ   36 (113)
T d1j8he1           8 RYLVKRTGEKVFLECVQDMD--HENMFWYRQ   36 (113)
T ss_dssp             SEEEEETTCCEEECEEESSC--CSEEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCC--ccEEEeEEe
Confidence            44678999999999986433  467999983

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.31  E-value=0.0039  Score=32.58  Aligned_cols=29  Identities=21%  Similarity=0.518  Sum_probs=22.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|.|....+  ...+.|||.
T Consensus         9 ~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ   37 (113)
T d1nfdb1           9 RHIIKEKGGRSVLTCIPISG--HSNVVWYQQ   37 (113)
T ss_dssp             SEEEEETTCCCEEEEECCTT--CCEEEEEEB
T ss_pred             CEEEEeCCCCEEEEEEeCCC--CCEEEEEEE
Confidence            34678999999999986544  457999985

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.24  E-value=0.007  Score=32.21  Aligned_cols=30  Identities=27%  Similarity=0.555  Sum_probs=22.9

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+...+|++++|+|.+.+.. -...+.|||.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ   40 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRE   40 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEE
Confidence            45778899999999987542 2346999984

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.011  Score=30.27  Aligned_cols=39  Identities=13%  Similarity=0.291  Sum_probs=27.4

Q ss_pred             ccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728          19 SIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE   62 (65)
Q Consensus        19 ~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~   62 (65)
                      +|.|...+..   .+..|++|+|.|++.  .....+.+||+|..
T Consensus         4 kPsLsa~P~~---~v~~G~~VTL~C~~~--~~~~~f~L~k~g~~   42 (98)
T d1ugna2           4 KPTLSAQPSP---VVNSGGNVTLQCDSQ--VAFDGFILCKEGED   42 (98)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEECS--SCCSEEEEEEC---
T ss_pred             CCEEEeeCCC---ccCCCCcEEEEeCCC--CCCCEEEEEECCCc
Confidence            4566655542   588999999999864  46788999998763

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0078  Score=31.43  Aligned_cols=30  Identities=10%  Similarity=0.133  Sum_probs=22.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCc--eEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAA--KIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~   59 (65)
                      .+.+.+|..++|.|....+....  .+.|||.
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ   39 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQ   39 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEE
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEE
Confidence            45678899999999875544333  4899985

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.14  E-value=0.0029  Score=33.20  Aligned_cols=29  Identities=17%  Similarity=0.464  Sum_probs=22.4

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|..... ....|.|||.
T Consensus         9 sl~~~~G~svtl~C~~~~~-~~~~i~WYrQ   37 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNI-GSRSVHWYQQ   37 (109)
T ss_dssp             EEEECTTSCEEEEEECTTG-GGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCC-CCcceeeeec
Confidence            3578999999999986542 3457999984

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0074  Score=31.44  Aligned_cols=30  Identities=7%  Similarity=0.148  Sum_probs=21.8

Q ss_pred             eEEeecCCcEEEEEEecCCCCCc--eEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAA--KIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~--~i~W~~~   59 (65)
                      .+.+.+|+.++|.|.-..+.-..  .+.|||.
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ   39 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQ   39 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEE
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEe
Confidence            35678899999999865443333  4789994

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0025  Score=32.17  Aligned_cols=29  Identities=17%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRGN   60 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~   60 (65)
                      +...+|++++|.|.... .....+.||+..
T Consensus         4 V~~~~G~svtL~C~~s~-~~~~~~~W~~~~   32 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQ-KKSIQFHWKNSN   32 (97)
T ss_dssp             EEEETTSCEEECCBCSS-SSCCCEEEEETT
T ss_pred             EEEEcCCcEEEEEEEec-CCCceEEEEEeC
Confidence            45689999999998754 466789999864

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.10  E-value=0.0039  Score=32.38  Aligned_cols=30  Identities=17%  Similarity=0.489  Sum_probs=23.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|.|....+ --..+.|||.
T Consensus         8 ~~~~~~~G~~vtl~C~~~~~-~~~~~~WYrQ   37 (110)
T d1ac6a_           8 GQVALSEEDFLTIHCNYSAS-GYPALFWYVQ   37 (110)
T ss_dssp             SEEEEETTEEEEECEEEECS-SCCEEEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCC-CCcceEEEEc
Confidence            45688999999999986553 2356999994

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.06  E-value=0.0037  Score=32.46  Aligned_cols=29  Identities=31%  Similarity=0.587  Sum_probs=22.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|.|....+  ...+.|||.
T Consensus         6 ~~~~~~~G~svtL~C~~~~~--~~~~~WYrQ   34 (112)
T d2cdeb1           6 RYLVIGTGKKITLECSQTMG--HDKMYWYQQ   34 (112)
T ss_dssp             SEEEEETTCCBCCEEEETTC--CSEEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCC--cccEEEEEE
Confidence            34678999999999987544  357999984

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.04  E-value=0.0021  Score=33.58  Aligned_cols=29  Identities=10%  Similarity=0.415  Sum_probs=22.3

Q ss_pred             eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      .+.+.+|++++|+|..... ....|.|||.
T Consensus         8 s~~~~~G~svtl~C~~~~~-~~~~i~WYrQ   36 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQL-PKNFAYWFQQ   36 (108)
T ss_dssp             EEEEETTSCCCEEEEETTG-GGSCCEEEEE
T ss_pred             eeEECCCCCEEEEEECCCC-CCccEEEEec
Confidence            4678899999999987433 3456999983

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0086  Score=30.59  Aligned_cols=30  Identities=17%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             eEEeecCCcEEEEEEecCCCCC-ceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAKPA-AKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~   59 (65)
                      .+...+|+.++|.|.-...... ..+.|||.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~   35 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKE   35 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEe
Confidence            4578899999999986544333 46789984

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.02  E-value=0.00023  Score=36.74  Aligned_cols=27  Identities=30%  Similarity=0.736  Sum_probs=21.8

Q ss_pred             EEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +.+.+|++++|+|....  ....+.|||.
T Consensus         3 lsV~eG~~vtL~C~~~~--~~~~i~WYrQ   29 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT--SINNLQWYRQ   29 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS--CEEEEEEECC
T ss_pred             ceECCCCCEEEEEEEeC--CcccEEEEEE
Confidence            46899999999998654  3567999984

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.0043  Score=33.00  Aligned_cols=30  Identities=20%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      ..+.+.+|+.++|+|...+. -...+.|||.
T Consensus         9 ~sv~~~~G~svtl~C~~s~~-~~~~i~WYrQ   38 (119)
T d1f3rb2           9 SLLSASVGDRVTLSCKGSQN-INNYLAWYQQ   38 (119)
T ss_dssp             SEECCCTTCCEEEEEECSSC-CBTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCC-CcceeEEeee
Confidence            34678999999999987543 3456999984

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.0028  Score=32.29  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=23.4

Q ss_pred             EEeecCCcEEEEEEec-CCCCCceEEEEECCEEc
Q psy7728          31 IEIRENQEITLECLVK-NAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~-~~~P~~~i~W~~~~~~l   63 (65)
                      +.-..|++++|.|.-. .......|.|++++..+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i   38 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLV   38 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccce
Confidence            3456699999999532 22344679999998765

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.97  E-value=0.0062  Score=32.29  Aligned_cols=30  Identities=23%  Similarity=0.471  Sum_probs=22.6

Q ss_pred             eEEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+...+|++++|.|...+.. -...|.|||.
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ   40 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQ   40 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEe
Confidence            45778999999999875543 2356999994

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.81  E-value=0.0063  Score=32.75  Aligned_cols=28  Identities=21%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             EeecCCcEEEEEEecCCC---CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK---PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~---P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+..   +...+.|||.
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ   41 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQ   41 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEE
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccc
Confidence            478899999999986532   3346899984

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0061  Score=31.42  Aligned_cols=29  Identities=17%  Similarity=0.464  Sum_probs=22.5

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      ..|.+|+|+|-.   .....|.|-|+++.+.|
T Consensus         8 ISGTtV~LTCP~---~~~~~i~W~~n~~~~~~   36 (91)
T d1xiwa_           8 ISGTTVILTCPQ---YPGSEILWQHNDKNIGG   36 (91)
T ss_dssp             EETTEEEEECSS---CTTSCEEEEETTEEESS
T ss_pred             EeCCEEEEECCC---CCCCceeeeeccccccC
Confidence            458999999953   34578999999987654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0032  Score=32.69  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=21.8

Q ss_pred             EEeecCCcEEEEEEecCC-CCCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNA-KPAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~   59 (65)
                      +.+.+|++++|.|..... .....+.|||.
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq   38 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQII   38 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEE
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEEC
Confidence            467899999999986422 24467999984

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.66  E-value=0.011  Score=31.85  Aligned_cols=28  Identities=18%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+|++++|+|.+.+.. ..-.+.|||.
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ   38 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRR   38 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeee
Confidence            679999999999998754 3455999985

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.60  E-value=0.0099  Score=32.14  Aligned_cols=28  Identities=18%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             EeecCCcEEEEEEecCCC---CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK---PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~---P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+..   ..-.+.|||.
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ   41 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQ   41 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeecccc
Confidence            578899999999987632   2235789973

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0007  Score=34.99  Aligned_cols=30  Identities=13%  Similarity=0.366  Sum_probs=23.2

Q ss_pred             eecCCcEEEEEEecCC-CCC-ceEEEEECCEE
Q psy7728          33 IRENQEITLECLVKNA-KPA-AKIVWYRGNTE   62 (65)
Q Consensus        33 ~~~G~~~~L~C~~~~~-~P~-~~i~W~~~~~~   62 (65)
                      +..++.++|+|.+.+. .|. ..|+|+++|..
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             HccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            4457889999999886 464 57999998753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.012  Score=30.08  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             eEEeecCCcEEEEEEecCC---CCCceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKNA---KPAAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~---~P~~~i~W~~~   59 (65)
                      .+.+..|+.++|.|.-...   .....+.|++.
T Consensus         8 ~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   40 (119)
T d1neua_           8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQ   40 (119)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEE
T ss_pred             eEEEeeCCCEEEEEEEEecCCCCccEEEEEEEe
Confidence            3578889999999985422   23458999973

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.52  E-value=0.012  Score=29.61  Aligned_cols=22  Identities=23%  Similarity=0.673  Sum_probs=18.0

Q ss_pred             CCcEEEEEEecCCCCCceEEEEE
Q psy7728          36 NQEITLECLVKNAKPAAKIVWYR   58 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~~~i~W~~   58 (65)
                      |++++|+|.... .....+.|||
T Consensus         1 G~~vtl~C~~~~-~~~~~~~Wyr   22 (94)
T d2gj6d1           1 GAIASLNCTYSD-RGSQSFFWYR   22 (94)
T ss_dssp             TSCEEEEEEECC-TTCCEEEEEE
T ss_pred             CccEEEEEEEcc-ccCCcEEEEE
Confidence            789999998754 4567899998

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.51  E-value=0.012  Score=32.07  Aligned_cols=28  Identities=21%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             EeecCCcEEEEEEecCCC---CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK---PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~---P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+..   ....+.|||.
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ   41 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQ   41 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEE
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEE
Confidence            688999999999987643   2346899984

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.002  Score=33.24  Aligned_cols=29  Identities=31%  Similarity=0.627  Sum_probs=23.5

Q ss_pred             ecCCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728          34 RENQEITLECLVKNAKPA-AKIVWYRGNTE   62 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~   62 (65)
                      ..+..++|.|.+.+..|. ..|+|.+||+.
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~   47 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALS   47 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCc
Confidence            346789999999998875 68999888754

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0035  Score=32.80  Aligned_cols=29  Identities=17%  Similarity=0.457  Sum_probs=22.9

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELKL   65 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~~   65 (65)
                      ..|.+|+|+|-..+   ..+|.|-+|++.+.|
T Consensus        12 ISGTtV~LTCP~~~---~~~I~Wkkn~~~i~g   40 (100)
T d1jbja2          12 ISGTSVELTCPLDS---DENLKWEKNGQELPQ   40 (100)
T ss_dssp             EETTEEEEECSSCC---CTTCEEEETTEEECS
T ss_pred             EeCCEEEEECCCCC---CCceEEeeccccCCC
Confidence            45899999997533   467999999988764

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.31  E-value=0.014  Score=31.56  Aligned_cols=28  Identities=18%  Similarity=0.438  Sum_probs=21.1

Q ss_pred             EeecCCcEEEEEEecCCC---CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK---PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~---P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.|..   ..-.+.|||.
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ   41 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQ   41 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEE
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeC
Confidence            578899999999987643   2335789974

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.012  Score=29.68  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=19.4

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTEL   63 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l   63 (65)
                      .+...|.|+|.+    ...+|+||+++..+
T Consensus        15 ~~dg~V~L~Cn~----~~k~i~W~kdg~~i   40 (81)
T d1sy6a1          15 QEDGSVLLTCDA----EAKNITWFKDGKMI   40 (81)
T ss_dssp             CSSSEEEEEECS----CSSEEEEEETTEEE
T ss_pred             ccCCeEEEEeCC----CCcEEEEecCCeEe
Confidence            344678999953    35599999999864

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.19  E-value=0.014  Score=31.53  Aligned_cols=28  Identities=14%  Similarity=0.552  Sum_probs=22.9

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQ   38 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEE
T ss_pred             eECCCCCeEEEEEEcCccccccccccccc
Confidence            678999999999998754 3456999984

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0071  Score=31.11  Aligned_cols=32  Identities=13%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             CeEEeecCCcEEEEEEecCCC--CCceEEEEECC
Q psy7728          29 SKIEIRENQEITLECLVKNAK--PAAKIVWYRGN   60 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~--P~~~i~W~~~~   60 (65)
                      ..+.+.+|++++|.|.-..+.  ..-.+.|||..
T Consensus         7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~   40 (116)
T d1xeda_           7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQG   40 (116)
T ss_dssp             SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-
T ss_pred             CEEEEcCCCCEEEEEEECCCCCccceeEEEEEcC
Confidence            456889999999999854332  23458899853

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=95.12  E-value=0.017  Score=31.08  Aligned_cols=28  Identities=25%  Similarity=0.451  Sum_probs=21.7

Q ss_pred             EeecCCcEEEEEEecCCCC---CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP---AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P---~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+..-   .-.+.|+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ   41 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQ   41 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEE
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccC
Confidence            5789999999999877532   235789984

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.12  E-value=0.016  Score=31.14  Aligned_cols=28  Identities=18%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|||.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ   39 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQ   39 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEE
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeE
Confidence            589999999999997643 2346899984

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.10  E-value=0.018  Score=30.82  Aligned_cols=28  Identities=7%  Similarity=0.334  Sum_probs=22.2

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. ..-.+.|+|.
T Consensus        10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ   38 (117)
T d1um5h1          10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQ   38 (117)
T ss_dssp             EECTTCCEEEEEEESSCCCSCCEEEEEEE
T ss_pred             eECCCCCEEEEEEEccccCCCCcCcccee
Confidence            678999999999997643 3346999984

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.0099  Score=31.17  Aligned_cols=31  Identities=19%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             CeEEeecCCcEEEEEEecCC-CCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNA-KPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~   59 (65)
                      +...+.+|++++|+|...+. ...-.+.|+|.
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq   34 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRL   34 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEEC
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEE
Confidence            34678999999999997532 24567899984

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.07  E-value=0.013  Score=31.34  Aligned_cols=28  Identities=11%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|||.
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ   39 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQ   39 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEE
Confidence            578999999999987643 3456999984

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.06  E-value=0.018  Score=31.01  Aligned_cols=28  Identities=18%  Similarity=0.379  Sum_probs=22.2

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQ   39 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEE
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeee
Confidence            578999999999997652 3456999984

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.01  Score=30.23  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             EEeecCCcEEEEEEecCCCC---CceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAKP---AAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~   59 (65)
                      +...+|++++|.|.......   .-.+.||+.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   45 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLIS   45 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEE
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEe
Confidence            46789999999998753322   235899973

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.02  E-value=0.0084  Score=31.73  Aligned_cols=28  Identities=18%  Similarity=0.485  Sum_probs=19.9

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+..- .-.+.|+|.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ   32 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQ   32 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEE
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEe
Confidence            3688999999999876432 345899985

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.02  E-value=0.017  Score=30.93  Aligned_cols=28  Identities=25%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQ   39 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEE
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceE
Confidence            578999999999998643 3456999984

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.98  E-value=0.013  Score=31.13  Aligned_cols=28  Identities=14%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..--+.|+|.
T Consensus        11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ   39 (109)
T d2ck0h1          11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQ   39 (109)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEEECCCccccccccccee
Confidence            689999999999997642 2346999984

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.87  E-value=0.004  Score=32.06  Aligned_cols=27  Identities=33%  Similarity=0.694  Sum_probs=20.3

Q ss_pred             cCCcEEEEEEecCCCCC-ceEEEEECCE
Q psy7728          35 ENQEITLECLVKNAKPA-AKIVWYRGNT   61 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~   61 (65)
                      .++.++|.|.+.+..|. ..|+|.+++.
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~   46 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSL   46 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCc
Confidence            46789999999998886 4799987764

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.011  Score=30.23  Aligned_cols=27  Identities=19%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAKPAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~   64 (65)
                      .+...|.|+|.+    ...+|+||++++.+.
T Consensus        20 ~~dGsV~L~Cn~----~~k~i~W~kdg~~i~   46 (86)
T d1jbja1          20 RGDGSVLLTCGL----TDKTIKWLKDGSIIS   46 (86)
T ss_dssp             SSSCEEEEECSS----SCSCEEEEETTEECC
T ss_pred             ccCCeEEEEeCC----CCcEEEEecCCceec
Confidence            445678999954    345999999998753

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.74  E-value=0.017  Score=30.78  Aligned_cols=28  Identities=14%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ   39 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQ   39 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEECccCccCCceecccc
Confidence            688999999999997653 3456899984

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.66  E-value=0.014  Score=31.58  Aligned_cols=28  Identities=18%  Similarity=0.457  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|||.
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ   39 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQ   39 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeee
Confidence            578999999999997643 2356899984

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.0047  Score=31.73  Aligned_cols=27  Identities=30%  Similarity=0.599  Sum_probs=22.0

Q ss_pred             CCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728          36 NQEITLECLVKNAKPA-AKIVWYRGNTE   62 (65)
Q Consensus        36 G~~~~L~C~~~~~~P~-~~i~W~~~~~~   62 (65)
                      +..++|.|.+.+..|. ..|+|.+++..
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~   47 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALT   47 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCC
Confidence            5678999999998886 47999887753

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.59  E-value=0.028  Score=30.09  Aligned_cols=28  Identities=21%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.|..- .-.+.|+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ   39 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQ   39 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccC
Confidence            5799999999999976532 346899984

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.57  E-value=0.023  Score=30.73  Aligned_cols=28  Identities=21%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+++.|+|.+.+.. ..-.+.|+|.
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ   38 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQ   38 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEE
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeee
Confidence            578999999999997653 3456899984

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.55  E-value=0.024  Score=30.42  Aligned_cols=28  Identities=7%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. ..-.+.|||.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ   39 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQ   39 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeee
Confidence            578999999999987643 3346899984

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.50  E-value=0.021  Score=30.59  Aligned_cols=28  Identities=11%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|||.
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ   39 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQ   39 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEE
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeee
Confidence            578999999999987653 2345999985

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.50  E-value=0.019  Score=30.74  Aligned_cols=28  Identities=14%  Similarity=0.373  Sum_probs=21.7

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. ..-.+.|||.
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ   39 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQ   39 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEE
Confidence            578999999999997642 3345899984

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.042  Score=28.17  Aligned_cols=31  Identities=13%  Similarity=0.464  Sum_probs=21.9

Q ss_pred             eEEeecCCcEEEEEEecC---CC---CCceEEEEECC
Q psy7728          30 KIEIRENQEITLECLVKN---AK---PAAKIVWYRGN   60 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~---~~---P~~~i~W~~~~   60 (65)
                      .+.+.+|+.++|.|.-..   +.   -...+.||+..
T Consensus        10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~   46 (121)
T d2g5ra1          10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAG   46 (121)
T ss_dssp             EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC
T ss_pred             EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEec
Confidence            468899999999998631   11   12458899874

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.34  E-value=0.012  Score=31.48  Aligned_cols=28  Identities=21%  Similarity=0.532  Sum_probs=21.9

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRH   39 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEE
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeE
Confidence            478999999999997643 2346899984

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.33  E-value=0.035  Score=30.16  Aligned_cols=28  Identities=11%  Similarity=0.319  Sum_probs=22.1

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. ..-.+.|+|.
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (130)
T d1rhhb1          10 VKKPGSSVQVSCKASGGTFSMYGFNWVRQ   38 (130)
T ss_dssp             EECTTCCEEEEEEETTSCCTTCEEEEEEE
T ss_pred             eECCCCCeEEEEEEeCCCccCCCcceEEe
Confidence            578999999999998643 3446999984

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.30  E-value=0.047  Score=29.30  Aligned_cols=28  Identities=14%  Similarity=0.402  Sum_probs=22.2

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ   39 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQ   39 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccC
Confidence            578999999999997642 3456899984

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.30  E-value=0.025  Score=30.42  Aligned_cols=28  Identities=11%  Similarity=0.287  Sum_probs=22.2

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+..- .-.+.|+|.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ   39 (121)
T d1nfdf1          11 LVQPGSSLKVSCAASGFTFSDFWMYWVRQ   39 (121)
T ss_dssp             EECTTCEEEEEEEEESSCGGGEEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceeecee
Confidence            6899999999999987543 245899983

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.30  E-value=0.023  Score=30.63  Aligned_cols=28  Identities=11%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|+|.
T Consensus        12 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ   40 (122)
T d1vgeh1          12 VKKPGASVKVSCKASGYSFTSYGLHWVRQ   40 (122)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSEEEEEEE
T ss_pred             EECCCCCEEEEEEEcCCCccCCCceeeEe
Confidence            579999999999997643 2345999984

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=94.27  E-value=0.036  Score=29.67  Aligned_cols=28  Identities=14%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (118)
T d1ct8b1          11 LVKPGASVKLSCKTSGFTFSSSYINWLKQ   39 (118)
T ss_dssp             EECTTCCEEEEEEEESSCSTTCEEEEEEE
T ss_pred             eECCCCCEEEEEEEccccCCCCCCcccEE
Confidence            678999999999998643 2346888874

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.16  E-value=0.025  Score=30.48  Aligned_cols=28  Identities=14%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQ   39 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCcccc
Confidence            688999999999997643 2345999974

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.12  E-value=0.026  Score=30.22  Aligned_cols=28  Identities=14%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQ   39 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccee
Confidence            688999999999998643 3456999984

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.07  E-value=0.03  Score=30.03  Aligned_cols=28  Identities=11%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQ   39 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEccCcccCCCCcccee
Confidence            578999999999997653 3346999984

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.07  E-value=0.035  Score=29.77  Aligned_cols=28  Identities=11%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|||.
T Consensus        11 ~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ   39 (121)
T d1j05b_          11 LVEPGASVKLSCTASGFNIKDTYMHWVKQ   39 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             eECCCCCEEEEEEEecCCCCCCCcceeeE
Confidence            588999999999987642 3346999984

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.04  E-value=0.027  Score=30.16  Aligned_cols=28  Identities=7%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDFSMHWVNQ   39 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceecccc
Confidence            579999999999997753 3345999984

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.03  E-value=0.039  Score=29.87  Aligned_cols=28  Identities=18%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQ   39 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEe
Confidence            578899999999998653 3455899973

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.01  E-value=0.045  Score=29.23  Aligned_cols=28  Identities=18%  Similarity=0.346  Sum_probs=22.3

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+++.|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQ   39 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeee
Confidence            578999999999998753 3456899983

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=94.00  E-value=0.041  Score=29.35  Aligned_cols=28  Identities=18%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.|.. -.-.+.|+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQ   39 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceE
Confidence            579999999999998643 2346899985

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.99  E-value=0.051  Score=29.35  Aligned_cols=28  Identities=11%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+++.|+|.+.+.. -.-.+.|+|.
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ   38 (126)
T d1lmka1          10 LMKPGRSLKISCKTTGYIFSNYWIEWVKQ   38 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTTEEEEEEEE
T ss_pred             eECCCCCeEEEEEEccCCCCCCCCcceee
Confidence            678999999999998753 2345899983

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.99  E-value=0.031  Score=30.23  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=22.1

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|+|.
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRR   39 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEeECCccCcCcccCcccc
Confidence            679999999999998743 3346899984

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.95  E-value=0.029  Score=30.04  Aligned_cols=28  Identities=14%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ   39 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQ   39 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeee
Confidence            689999999999997653 2335889974

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.94  E-value=0.038  Score=30.26  Aligned_cols=28  Identities=11%  Similarity=0.400  Sum_probs=22.1

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|+|.
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ   39 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQ   39 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceecccc
Confidence            578999999999998753 2345999974

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.94  E-value=0.033  Score=29.84  Aligned_cols=28  Identities=11%  Similarity=0.315  Sum_probs=22.4

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQ   39 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEcccc
Confidence            578999999999998753 3456999984

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.89  E-value=0.03  Score=30.31  Aligned_cols=28  Identities=14%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQ   39 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEEECCccccCCcceecee
Confidence            578999999999997643 2346899984

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.88  E-value=0.053  Score=28.92  Aligned_cols=29  Identities=14%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             EEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          31 IEIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      ..+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ   39 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQ   39 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeee
Confidence            3689999999999998643 3346899983

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.87  E-value=0.03  Score=30.18  Aligned_cols=28  Identities=11%  Similarity=0.309  Sum_probs=21.8

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSFTSYWIHWLKQ   39 (125)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEccCCCCCCCCccccC
Confidence            578999999999997653 2346899884

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.86  E-value=0.054  Score=29.27  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=21.8

Q ss_pred             EeecCCcEEEEEEecCCCC-C-ceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-A-AKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~-~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+..= . -.+.|+|.
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ   40 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRL   40 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEE
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeE
Confidence            5789999999999986532 2 46899984

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.86  E-value=0.031  Score=30.03  Aligned_cols=28  Identities=14%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ   39 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQ   39 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEccee
Confidence            578999999999997642 2335889974

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.83  E-value=0.053  Score=28.21  Aligned_cols=25  Identities=12%  Similarity=0.348  Sum_probs=19.1

Q ss_pred             cCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          35 ENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      +|++++|+|.+.+.. -.-.+.|+|.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ   26 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQ   26 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEe
Confidence            488999999997642 3346999984

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.82  E-value=0.032  Score=29.98  Aligned_cols=28  Identities=14%  Similarity=0.278  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+..- .-.+.|+|.
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ   39 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQ   39 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceE
Confidence            5899999999999986532 346899884

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=93.81  E-value=0.031  Score=30.42  Aligned_cols=28  Identities=14%  Similarity=0.411  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ   39 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQ   39 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEEECCCCCcCCccccccc
Confidence            679999999999997653 2346899984

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.80  E-value=0.058  Score=28.83  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             EeecCCcEEEEEEecCCCCC--ceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKPA--AKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~--~~i~W~~~   59 (65)
                      .+++|++++|+|.+.|..=.  -.+.|+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ   40 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQ   40 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEE
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceE
Confidence            68899999999999874322  24789883

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.66  E-value=0.063  Score=29.22  Aligned_cols=28  Identities=14%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .+++|+++.|+|.+.+..- .-.+.|+|.
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ   38 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQ   38 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceE
Confidence            5899999999999976533 235899883

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.07  Score=26.71  Aligned_cols=31  Identities=23%  Similarity=0.477  Sum_probs=24.6

Q ss_pred             ecCCcEEEEEEecCCC-CCceEEEEECCEEcc
Q psy7728          34 RENQEITLECLVKNAK-PAAKIVWYRGNTELK   64 (65)
Q Consensus        34 ~~G~~~~L~C~~~~~~-P~~~i~W~~~~~~l~   64 (65)
                      ..|..+.|+|....+. +...=.|.|||+.|+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~   41 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLK   41 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEcc
Confidence            5578889999887653 345689999999885

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.60  E-value=0.036  Score=29.99  Aligned_cols=28  Identities=14%  Similarity=0.390  Sum_probs=21.8

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQ   39 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeec
Confidence            578999999999998753 2345889984

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.55  E-value=0.039  Score=29.73  Aligned_cols=28  Identities=14%  Similarity=0.277  Sum_probs=21.6

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+..- .-.+.|+|.
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ   39 (124)
T d2b1hh1          11 VKKSGESLKISCQTSGYSFSDYWIGWVRQ   39 (124)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCcCcccee
Confidence            5789999999999987532 235899983

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.55  E-value=0.038  Score=29.57  Aligned_cols=28  Identities=11%  Similarity=0.285  Sum_probs=21.4

Q ss_pred             EeecCCcEEEEEEecCCCC-CceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAKP-AAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+..- .-.+.|+|.
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTFTTYAMHWVKQ   39 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeccee
Confidence            5789999999999876422 235899984

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=93.52  E-value=0.072  Score=28.42  Aligned_cols=28  Identities=18%  Similarity=0.399  Sum_probs=22.3

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+.+|+.++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ   39 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQ   39 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEE
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccC
Confidence            578999999999998653 3456899984

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.43  E-value=0.045  Score=29.38  Aligned_cols=28  Identities=14%  Similarity=0.305  Sum_probs=21.5

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|+|.
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ   39 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQ   39 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEcccc
Confidence            578999999999997642 2345899984

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.28  E-value=0.044  Score=29.68  Aligned_cols=28  Identities=14%  Similarity=0.355  Sum_probs=21.9

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (127)
T d1n0xh1          11 VKKPGASVKVSCQASGYRFSNFVIHWVRQ   39 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEe
Confidence            689999999999998743 2345899984

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.24  E-value=0.056  Score=29.26  Aligned_cols=28  Identities=11%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQ   39 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCccCCCccccee
Confidence            579999999999997653 2235889874

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.21  E-value=0.089  Score=27.97  Aligned_cols=28  Identities=11%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. -.--+.|+|.
T Consensus        11 ~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ   39 (117)
T d1mfah1          11 VARPGASVKMSCKASGYTFTNYWMHWIKQ   39 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             eECCCCCEEEEEEEcccCCCCCceEeeee
Confidence            578899999999998653 3356889984

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.19  E-value=0.052  Score=29.21  Aligned_cols=28  Identities=14%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+.++|+|.+.+.. -.-.+.|+|.
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQ   39 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeec
Confidence            678999999999997642 2345899984

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.05  E-value=0.05  Score=29.52  Aligned_cols=28  Identities=14%  Similarity=0.369  Sum_probs=22.1

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+.. ..-.+.|+|.
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ   39 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNYAINWVRQ   39 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGCCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceEcccc
Confidence            578999999999987643 3456999984

>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.08  Score=27.84  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=26.3

Q ss_pred             EeecCCcEEEEEEecCCCCCc----eEEEEECCEEccC
Q psy7728          32 EIRENQEITLECLVKNAKPAA----KIVWYRGNTELKL   65 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~----~i~W~~~~~~l~~   65 (65)
                      .+..|+ .++.|++.+--|+.    ++.|+.+++++.|
T Consensus        12 ~lVpgd-~~vaCtAhnvtP~~p~~lsfsll~Gd~~Leg   48 (116)
T d1gsma2          12 ALVPGD-PEVACTAHKVTPVDPNALSFSLLVGGQELEG   48 (116)
T ss_dssp             SBCTTC-CEEEEEEEEEBCCCTTTEEEEEEETTEECTT
T ss_pred             hcccCC-ceEEEEeccccCCCCCceeeeeeeCcceecc
Confidence            467785 78999988665654    6999999999876

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.50  E-value=0.06  Score=29.02  Aligned_cols=28  Identities=18%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W~~~   59 (65)
                      .+++|+++.|+|.+.+.. -.-.+.|+|.
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ   39 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQ   39 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCccCCccccceE
Confidence            578999999999998653 2345899983

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.50  E-value=0.1  Score=25.82  Aligned_cols=30  Identities=13%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             eEEeecCCcEEEEEEecC--CCC---CceEEEEEC
Q psy7728          30 KIEIRENQEITLECLVKN--AKP---AAKIVWYRG   59 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~--~~P---~~~i~W~~~   59 (65)
                      .+.+.+|+.|+|.|.-..  ..+   .-.+.||+.
T Consensus         9 ~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~   43 (118)
T d1qfoa_           9 NVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYD   43 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTSCC--CCEEEEEES
T ss_pred             EEEEecCCcEEEEEEEeeccCCCCcceEEEEEEee
Confidence            457899999999998531  111   234668875

>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.13  E-value=0.0053  Score=29.77  Aligned_cols=26  Identities=38%  Similarity=0.755  Sum_probs=13.4

Q ss_pred             cCCcEEEEEEecCCCCCc-eEEEEECC
Q psy7728          35 ENQEITLECLVKNAKPAA-KIVWYRGN   60 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~-~i~W~~~~   60 (65)
                      ..+.++|.|.+.+..|.. .++|..++
T Consensus        19 ~~~~vtl~CL~~gF~P~~i~v~W~~~~   45 (68)
T d2j88h1          19 TNSMVTLGCLVKGYFPEPVTVTWNSGS   45 (68)
T ss_dssp             --------CEEEEEBSSCCCCCSCC--
T ss_pred             CCCeEEEEEEEeceECCCcEEEECCCC
Confidence            467799999999998875 79995443

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.66  E-value=0.056  Score=28.85  Aligned_cols=28  Identities=18%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             EeecCCcEEEEEEecCC-CCCceEEEEEC
Q psy7728          32 EIRENQEITLECLVKNA-KPAAKIVWYRG   59 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~-~P~~~i~W~~~   59 (65)
                      .+++|++++|+|.+.+. .-.-.+.|+|.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQ   39 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEE
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccC
Confidence            67999999999998653 23456889883

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.18  Score=25.13  Aligned_cols=28  Identities=21%  Similarity=0.381  Sum_probs=18.2

Q ss_pred             EEeecCCcEEEEEEecCC--CCCceEEEEE
Q psy7728          31 IEIRENQEITLECLVKNA--KPAAKIVWYR   58 (65)
Q Consensus        31 ~~~~~G~~~~L~C~~~~~--~P~~~i~W~~   58 (65)
                      +.+..|++++|.|.....  .+...+.||+
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~   33 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFW   33 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEe
Confidence            567889999999986432  2233455553

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.97  Score=23.19  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=25.6

Q ss_pred             EeecCCcEEEEEEecCC------CCCceEEEEECCEEcc
Q psy7728          32 EIRENQEITLECLVKNA------KPAAKIVWYRGNTELK   64 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~------~P~~~i~W~~~~~~l~   64 (65)
                      .+.-|++++.+|..+..      --+..|.|..|++.+-
T Consensus        14 vv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P   52 (100)
T d1i1ra1          14 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP   52 (100)
T ss_dssp             EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECC
T ss_pred             eEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECC
Confidence            46779999999998532      1346899999998863

>d2oz4a2 b.1.1.4 (A:186-282) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=1.2  Score=22.78  Aligned_cols=44  Identities=20%  Similarity=0.405  Sum_probs=33.4

Q ss_pred             CCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728          16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK   64 (65)
Q Consensus        16 pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~   64 (65)
                      |+..|.+.. +.    .+..|..-.+.|...+-.|+  |.|.-+.+|+.+.
T Consensus         3 p~~~P~L~~-P~----llEVGt~~~V~C~ldglFPAsEA~v~L~LGdq~L~   48 (97)
T d2oz4a2           3 PATPPQLVS-PR----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN   48 (97)
T ss_dssp             CSSCCEEEC-CS----EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECC
T ss_pred             CCCCCcccC-Cc----cEecccceeEEEEeccEEechHcEEEEEecCcccC
Confidence            555666654 33    57889999999999888897  5688888888763

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=1.2  Score=22.46  Aligned_cols=27  Identities=7%  Similarity=0.048  Sum_probs=17.3

Q ss_pred             EeecCCcEEEEEEecCCC-CCceEEE-EE
Q psy7728          32 EIRENQEITLECLVKNAK-PAAKIVW-YR   58 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~-P~~~i~W-~~   58 (65)
                      .+.+|+.++|.|...+.. +...+.| |+
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q   39 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHK   39 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEE
Confidence            467799999999875443 3333344 44

>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.57  E-value=1.2  Score=22.06  Aligned_cols=21  Identities=38%  Similarity=0.759  Sum_probs=16.2

Q ss_pred             EeecCCcEEEEEEecCCCCCceEE
Q psy7728          32 EIRENQEITLECLVKNAKPAAKIV   55 (65)
Q Consensus        32 ~~~~G~~~~L~C~~~~~~P~~~i~   55 (65)
                      .+.+|+.++.+|.+.   |.+.++
T Consensus        12 ~v~eGt~VtVtC~a~---~~a~v~   32 (84)
T d2oz4a1          12 EVSEGTEVTVKCEAH---PRAKVT   32 (84)
T ss_dssp             EEETTCEEEEEEECC---TTSEEE
T ss_pred             cCCCCCEEEEEEecC---CCcEEE
Confidence            789999999999873   445544

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.15  E-value=1.4  Score=22.37  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=25.2

Q ss_pred             CeEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728          29 SKIEIRENQEITLECLVKNAKPAAKIVWYRG   59 (65)
Q Consensus        29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~   59 (65)
                      +...+..|+...|.|-+.-----|+++|-|-
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKl   41 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKH   41 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEe
Confidence            3457899999999999876556689999883

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.45  E-value=0.6  Score=22.94  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             eEEeecCCcEEEEEEecCCCC---CceEEEEECCEEc
Q psy7728          30 KIEIRENQEITLECLVKNAKP---AAKIVWYRGNTEL   63 (65)
Q Consensus        30 ~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~~~~l   63 (65)
                      ++....|+.++|.|.-.....   .-.+.|.+++..+
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v   39 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMV   39 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEE
Confidence            356788999999997533221   1357888877653

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.32  E-value=0.42  Score=24.06  Aligned_cols=24  Identities=17%  Similarity=0.390  Sum_probs=17.4

Q ss_pred             cCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728          35 ENQEITLECLVKNAKPAAKIVWYRGNT   61 (65)
Q Consensus        35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~   61 (65)
                      +|+.+.|+|-+.   ....|.|.+|+.
T Consensus        20 ~~~~V~L~C~t~---eE~~I~W~kd~~   43 (87)
T d3d85d1          20 PGEMVVLTCDTP---EEDGITWTLDQS   43 (87)
T ss_dssp             CCEEEEEECSSS---CCSSCEEEETTC
T ss_pred             CccEEEEecCCC---cccccEEeeCCc
Confidence            456789999542   345799999864