Psyllid ID: psy7735

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSLRDDL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHccccccEEEEccccHHHHHcHHHHHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccccccEEEEEcccHHHHHcHHHHHHHHHHHHHccEEcccEEEEcccccEEEEEcccHHHHHHHHHHHHHHccccccccccEEEEEccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
MGLCDNLLTCILRawdfskpilfcpamntkmwnhpitkshintlkswgyeeipcvsktlmcgdtglgamaevdtikygfvpntirkstepqdpnnfvdnnagiteysLTGFLYFSLRDDL
Flexible Loop (DISEMBL)
MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTirkstepqdpnnfvdnnagiteyslTGFLYFSLRDDL
Low Complexity Region (SEG)
MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSLRDDL
Disordered region (IsUnstruct)
**LCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIR**********FVDNNAGITEYSLTGFLYFSL****
Disordered Region (DISOPRED)
MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSLRDD*
Disordered Region (DISEMBL)
MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSLRDDL
Disordered Region (DISPRO)
*GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSLR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSLRDDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q8BZB2	204	Phosphopantothenoylcystei	yes	N/A	0.616	0.362	0.702	5e-29
Q96CD2	204	Phosphopantothenoylcystei	yes	N/A	0.616	0.362	0.716	7e-29
P94063	201	Probable phosphopantothen	yes	N/A	0.616	0.368	0.594	2e-19
Q9SWE5	209	Phosphopantothenoylcystei	no	N/A	0.616	0.354	0.581	2e-19
Q54433	179	Probable phosphopantothen	yes	N/A	0.616	0.413	0.5	9e-16
Q9UTI7	625	Probable thymidylate synt	yes	N/A	0.858	0.164	0.398	4e-15
Q54Y51	197	Putative phosphopantothen	yes	N/A	0.616	0.375	0.519	1e-14
P36076	571	Coenzyme A biosynthesis p	yes	N/A	0.733	0.154	0.375	1e-11
P36024	562	Phosphopantothenoylcystei	no	N/A	0.625	0.133	0.410	3e-09
Q08438	674	Phosphopantothenoylcystei	no	N/A	0.591	0.105	0.378	8e-08

>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 63/74 (85%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDNLLTC++RAWD +KP+LFCPAMNT MW HP+T   +  LK++GY EIPCVSK L+C
Sbjct: 114 GICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVC 173

Query: 62  GDTGLGAMAEVDTI 75
           GD GLGAMAEV+TI
Sbjct: 174 GDQGLGAMAEVETI 187

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 6

>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=2

 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 63/74 (85%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT   ++ LK++GY EIPCV+K L+C
Sbjct: 114 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 173

Query: 62  GDTGLGAMAEVDTI 75
           GD GLGAMAEV TI
Sbjct: 174 GDEGLGAMAEVGTI 187

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 51/74 (68%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLLTCI+RAWD+SKP+   PAMNT MWN+P T+ H+  L   G   IP + K L C
Sbjct: 108 GLCDNLLTCIVRAWDYSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLAC 167

Query: 62  GDTGLGAMAEVDTI 75
           GD G GAMAE   I
Sbjct: 168 GDYGNGAMAEPSLI 181

Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 52/74 (70%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLLTCI+RAWD++KP+   PAMNT MWN+P T+ H+ +L   G   IP + K L C
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAC 175

Query: 62  GDTGLGAMAEVDTI 75
           GD G GAMAE   I
Sbjct: 176 GDYGNGAMAEPSLI 189

Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q54433|COAC_STRMU Probable phosphopantothenoylcysteine decarboxylase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=coaC PE=3 SV=2

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 49/74 (66%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G  DN++T +  A     P  F PAMNTKM+ +PIT+S+I  LK +GY+EI   S  L C
Sbjct: 98  GFADNIVTSVALALPLEVPKFFAPAMNTKMYENPITQSNIALLKKFGYKEIQPKSSVLAC 157

Query: 62  GDTGLGAMAEVDTI 75
           GD G GA+A++DTI
Sbjct: 158 GDVGSGALADLDTI 171

Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine.

Streptococcus mutans (taxid: 1309)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q9UTI7|TYSY_SCHPO Probable thymidylate synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.04 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 15/118 (12%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSW--GYEEIPCVSKTL 59
           GLCDNLLT ++RAW   KPIL  PAMNT MW +PIT+ H++ +       E I  + K L
Sbjct: 130 GLCDNLLTSLIRAWAPLKPILLAPAMNTLMWTNPITQEHLSAISRIYKNSEFIMPIEKVL 189

Query: 60  MCGDTGLGAMAEVDTI-----------KYGFVPNTIRKSTEPQDPNNFVDNNAGITEY 106
            CGD G+G MAE   I           +   +PN + K+ + QD ++  +  A   EY
Sbjct: 190 ACGDIGMGGMAEWRNIVGRVADKLQLEQKSVLPNAV-KNIDGQD-DDSSEQTAAFEEY 245

Required for both nuclear and mitochondrial DNA synthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|Q54Y51|COAC_DICDI Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium discoideum GN=ppcdc PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 2   GLCDNLLTCILRAWDF-SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEE--IPCVSKT 58
           GLCDNLLT ++RAWD+ +K ++  PAMNT MW +P T  HI TLKS       I  + K 
Sbjct: 112 GLCDNLLTSLIRAWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKK 171

Query: 59  LMCGDTGLGAMAEVDTI 75
           L CGD G+GAM +V  I
Sbjct: 172 LFCGDIGMGAMEQVPKI 188

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P36076|CAB3_YEAST Coenzyme A biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAB3 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 8/96 (8%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTL-KSWGYEEI-PCVSKTL 59
           G+C+NLLT ++R W    P+L  PAMNT M+ +P+TK H+ +L + + + ++   V K L
Sbjct: 417 GICNNLLTSVMRDWSPLTPVLIAPAMNTFMYINPMTKKHLTSLVQDYPFIQVLKPVEKVL 476

Query: 60  MCGDTGLGAMAE----VDTIKYGFVPNTIRKSTEPQ 91
           +CGD G+G M E    V+ ++     N IRK+ + +
Sbjct: 477 ICGDIGMGGMREWTDIVEIVRRRI--NEIRKARDEE 510

Component of the phosphopantothenoylcysteine decarboxylase (PPCDC) involved in the coenzyme A synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P36024|SIS2_YEAST Phosphopantothenoylcysteine decarboxylase subunit SIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIS2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 1   MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLK---SWGYEEIPCVSK 57
           +GLCDNLLT ++RAW+ S PIL  P+M +  +N  +TK  + T+K   SW     P    
Sbjct: 403 LGLCDNLLTSVIRAWNPSYPILLAPSMVSSTFNSMMTKKQLQTIKEEMSWVTVFKPSEKV 462

Query: 58  TLMCGDTGLGAMAEVDTI 75
             + GD GLG M + + I
Sbjct: 463 MDINGDIGLGGMMDWNEI 480

Component of the phosphopantothenoylcysteine decarboxylase (PPCDC) involved in the coenzyme A synthesis. Acts as an inhibitory subunit of protein phosphatase PPZ1, which is involved in many cellular processes such as G1-S transition or salt tolerance. Also modulates the expression of the ENA1 ATPase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q08438|VHS3_YEAST Phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHS3 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 11/82 (13%)

Query: 1   MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV----- 55
           +GLCDNLLT ++RAW+ + PI   P+M +  +N  +TK H   ++    EE+P V     
Sbjct: 484 LGLCDNLLTSVIRAWNPTFPIFLAPSMGSGTFNSIMTKKHFRIIQ----EEMPWVTVFKP 539

Query: 56  SKTLMC--GDTGLGAMAEVDTI 75
           S+ +M   GD GL  M + + I
Sbjct: 540 SEKVMGINGDIGLSGMMDANEI 561

Component of the phosphopantothenoylcysteine decarboxylase (PPCDC) involved in the coenzyme A synthesis. Acts as an inhibitory subunit of protein phosphatase PPZ1, which is involved in many cellular processes such as G1-S transition or salt tolerance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
312374097	192	hypothetical protein AND_16473 [Anophele	0.683	0.427	0.746	4e-30
118792853	191	AGAP011994-PA [Anopheles gambiae str. PE	0.616	0.387	0.770	2e-29
383861525	199	PREDICTED: phosphopantothenoylcysteine d	0.725	0.437	0.652	4e-29
289743111	208	phosphopantothenoylcysteine decarboxylas	0.625	0.360	0.746	7e-29
307186857	196	Phosphopantothenoylcysteine decarboxylas	0.616	0.377	0.743	7e-29
157125988	192	phosphopentothenoylcysteine decarboxylas	0.616	0.385	0.770	1e-28
260800331	194	hypothetical protein BRAFLDRAFT_60132 [B	0.691	0.427	0.666	1e-28
156544456	196	PREDICTED: phosphopantothenoylcysteine d	0.616	0.377	0.716	2e-28
332027327	196	Phosphopantothenoylcysteine decarboxylas	0.616	0.377	0.716	3e-28
357624336	200	hypothetical protein KGM_09568 [Danaus p	0.616	0.37	0.729	8e-28

>gi|312374097|gb|EFR21738.1| hypothetical protein AND_16473 [Anopheles darlingi]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLL C  RAWD  KP+LFCPAMNT+MW HPIT S I TLKSWG+ EIPC++KTLMC
Sbjct: 103 GLCDNLLLCTTRAWDPQKPLLFCPAMNTRMWEHPITASQIETLKSWGHREIPCIAKTLMC 162

Query: 62  GDTGLGAMAEVDTIKYGFVPNTI 84
           GDTGLGAMAEVDTI    V NT+
Sbjct: 163 GDTGLGAMAEVDTI-VATVRNTL 184

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792853|ref|XP_320537.3| AGAP011994-PA [Anopheles gambiae str. PEST] gi|116117098|gb|EAA00226.3| AGAP011994-PA [Anopheles gambiae str. PEST]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 65/74 (87%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLL C  RAWD +KP+LFCPAMNT+MW HPIT + I TLKSWG+ E+PC++KTLMC
Sbjct: 105 GLCDNLLLCTTRAWDPTKPLLFCPAMNTRMWEHPITATQIGTLKSWGHREVPCIAKTLMC 164

Query: 62  GDTGLGAMAEVDTI 75
           GDTGLGAMAEVDTI
Sbjct: 165 GDTGLGAMAEVDTI 178

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861525|ref|XP_003706236.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Megachile rotundata]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%), Gaps = 5/92 (5%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDN+LTC+ RAWD SKP++FCPAMNTKMW HP+T   +  LKSWGY+E+ C+SKTLMC
Sbjct: 105 GICDNILTCVARAWDQSKPLIFCPAMNTKMWEHPVTAPQVALLKSWGYKEVTCISKTLMC 164

Query: 62  GDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDP 93
           GDTG+G MAEVDTI    V  T+R S  P DP
Sbjct: 165 GDTGMGGMAEVDTI----VQTTLR-SLNPWDP 191

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743111|gb|ADD20303.1| phosphopantothenoylcysteine decarboxylase [Glossina morsitans morsitans]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 65/75 (86%)

Query: 1   MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLM 60
           MGLCDNLL C++RAWD  KP+LFCPAMNT+M++HPIT   IN LKSWGY EIP ++KTL+
Sbjct: 105 MGLCDNLLMCVVRAWDLKKPLLFCPAMNTRMYDHPITSDQINKLKSWGYHEIPSIAKTLI 164

Query: 61  CGDTGLGAMAEVDTI 75
           CGDTG GAMAEVDTI
Sbjct: 165 CGDTGNGAMAEVDTI 179

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186857|gb|EFN72273.1| Phosphopantothenoylcysteine decarboxylase [Camponotus floridanus]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 66/74 (89%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDN++TC+ RAWD +KP+LFCPAMNTKMW HPIT   ++ LKSWGY+E+ CVSKTLMC
Sbjct: 104 GICDNIVTCVARAWDNAKPLLFCPAMNTKMWEHPITMPQVSLLKSWGYKEVHCVSKTLMC 163

Query: 62  GDTGLGAMAEVDTI 75
           GDTG+GAMAEVDTI
Sbjct: 164 GDTGMGAMAEVDTI 177

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125988|ref|XP_001654481.1| phosphopentothenoylcysteine decarboxylase [Aedes aegypti] gi|157125992|ref|XP_001654483.1| phosphopentothenoylcysteine decarboxylase [Aedes aegypti] gi|94469358|gb|ABF18528.1| phosphopantothenoylcysteine decarboxylase [Aedes aegypti] gi|108873455|gb|EAT37680.1| AAEL010356-PA [Aedes aegypti] gi|108873457|gb|EAT37682.1| AAEL010351-PA [Aedes aegypti]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 62/74 (83%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLL C  RAWD  KP+ F PAMNT+MW HPIT   I+TLKSWG+ EIPCV+KTLMC
Sbjct: 103 GLCDNLLLCTARAWDLGKPLFFAPAMNTRMWEHPITAPQIDTLKSWGFREIPCVAKTLMC 162

Query: 62  GDTGLGAMAEVDTI 75
           GDTGLGAMAEVDTI
Sbjct: 163 GDTGLGAMAEVDTI 176

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260800331|ref|XP_002595087.1| hypothetical protein BRAFLDRAFT_60132 [Branchiostoma floridae] gi|229280329|gb|EEN51098.1| hypothetical protein BRAFLDRAFT_60132 [Branchiostoma floridae]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 68/84 (80%), Gaps = 1/84 (1%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLLTC++R WD ++P+LFCPAMNT MWNHP+T+ HI+ LK +GY E+PCV KTL C
Sbjct: 106 GLCDNLLTCVVRCWDLTQPLLFCPAMNTHMWNHPLTQRHIDVLKGFGYIEVPCVEKTLAC 165

Query: 62  GDTGLGAMAEVDTIKYGFVPNTIR 85
           GDTGLGAMAEV TI    V  ++R
Sbjct: 166 GDTGLGAMAEVSTI-VAAVQKSLR 188

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156544456|ref|XP_001607646.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Nasonia vitripennis]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 63/74 (85%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDN+LTC+ RAWD  KP+LFCPAMNTKMW HP+T   +  LKSWGY+E+PC+SK LMC
Sbjct: 104 GICDNILTCVARAWDPHKPLLFCPAMNTKMWEHPVTAPQVALLKSWGYKEVPCISKNLMC 163

Query: 62  GDTGLGAMAEVDTI 75
           GDTG+G MAEVDTI
Sbjct: 164 GDTGMGGMAEVDTI 177

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027327|gb|EGI67411.1| Phosphopantothenoylcysteine decarboxylase [Acromyrmex echinatior]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 65/74 (87%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDN++TC+ RAWD SKP+LFCPAMNT+MW HP+T   ++ LKSWGY+E+ CVSKTLMC
Sbjct: 104 GICDNIVTCVARAWDPSKPLLFCPAMNTRMWEHPVTMPQVSLLKSWGYKEVHCVSKTLMC 163

Query: 62  GDTGLGAMAEVDTI 75
           GD G+GAMAEVDTI
Sbjct: 164 GDVGMGAMAEVDTI 177

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624336|gb|EHJ75152.1| hypothetical protein KGM_09568 [Danaus plexippus]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 65/74 (87%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDNLLTC +RAWD SKP+LFCPAMNT+M+ HPIT + I TLK+WGY+EIP + K LMC
Sbjct: 110 GICDNLLTCTVRAWDVSKPLLFCPAMNTRMYQHPITANQIETLKAWGYKEIPSIEKKLMC 169

Query: 62  GDTGLGAMAEVDTI 75
           GDTG+GAMA+VDTI
Sbjct: 170 GDTGIGAMADVDTI 183

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
UNIPROTKB|Q58DB8	230	MDS018 "Putative uncharacteriz	0.766	0.4	0.612	3.9e-28
MGI|MGI:1914062	204	Ppcdc "phosphopantothenoylcyst	0.616	0.362	0.702	6.4e-28
UNIPROTKB|H3BRQ0	172	PPCDC "Phosphopantothenoylcyst	0.616	0.430	0.716	8.2e-28
UNIPROTKB|Q96CD2	204	PPCDC "Phosphopantothenoylcyst	0.616	0.362	0.716	8.2e-28
FB|FBgn0050290	191	Ppcdc "Phosphopantothenoylcyst	0.616	0.387	0.689	1.3e-27
ZFIN|ZDB-GENE-040426-1749	231	ppcdc "phosphopantothenoylcyst	0.616	0.320	0.675	1.3e-27
RGD|1306267	204	Ppcdc "phosphopantothenoylcyst	0.616	0.362	0.689	1.7e-27
UNIPROTKB|D3ZZZ5	242	Ppcdc "Protein Ppcdc" [Rattus	0.616	0.305	0.689	1.7e-27
UNIPROTKB|I3LFK1	220	PPCDC "Uncharacterized protein	0.616	0.336	0.702	2.2e-27
UNIPROTKB|F1P6A0	204	PPCDC "Uncharacterized protein	0.616	0.362	0.702	3.5e-27

UNIPROTKB|Q58DB8 MDS018 "Putative uncharacterized protein MDS018" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 57/93 (61%), Positives = 69/93 (74%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT+  +  LK +GY EIPCV+K L+C
Sbjct:   130 GICDNLLTCVIRAWDRSKPLLFCPAMNTAMWEHPITEQQVGQLKDFGYIEIPCVAKKLVC 189

Query:    62 GDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPN 94
             GD GLGAMAEV TI  G V   + +   P + N
Sbjct:   190 GDQGLGAMAEVGTI-VGKVKEVLSQRQLPAELN 221

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:1914062 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 52/74 (70%), Positives = 63/74 (85%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD +KP+LFCPAMNT MW HP+T   +  LK++GY EIPCVSK L+C
Sbjct:   114 GICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVC 173

Query:    62 GDTGLGAMAEVDTI 75
             GD GLGAMAEV+TI
Sbjct:   174 GDQGLGAMAEVETI 187

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

UNIPROTKB|H3BRQ0 PPCDC "Phosphopantothenoylcysteine decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 53/74 (71%), Positives = 63/74 (85%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT   ++ LK++GY EIPCV+K L+C
Sbjct:    82 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 141

Query:    62 GDTGLGAMAEVDTI 75
             GD GLGAMAEV TI
Sbjct:   142 GDEGLGAMAEVGTI 155

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q96CD2 PPCDC "Phosphopantothenoylcysteine decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 53/74 (71%), Positives = 63/74 (85%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT   ++ LK++GY EIPCV+K L+C
Sbjct:   114 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 173

Query:    62 GDTGLGAMAEVDTI 75
             GD GLGAMAEV TI
Sbjct:   174 GDEGLGAMAEVGTI 187

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0009108 "coenzyme biosynthetic process" evidence=TAS

GO:0015939 "pantothenate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

FB|FBgn0050290 Ppcdc "Phosphopantothenoylcysteine decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 51/74 (68%), Positives = 64/74 (86%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDN++ C++RAWD  KP+LF PAMNT+M++HPIT+  I+ L SWGY+EIPC+SKTLMC
Sbjct:   106 GICDNIVMCVVRAWDLEKPLLFAPAMNTRMYDHPITREQIDKLTSWGYKEIPCISKTLMC 165

Query:    62 GDTGLGAMAEVDTI 75
             GDTG GAMAEV TI
Sbjct:   166 GDTGNGAMAEVPTI 179

GO:0003824 "catalytic activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISA

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=ISA

ZFIN|ZDB-GENE-040426-1749 ppcdc "phosphopantothenoylcysteine decarboxylase" [Danio rerio (taxid:7955)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 50/74 (67%), Positives = 63/74 (85%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD S+P+LFCPAMNT MW HPIT   ++T+K++GY EIPC++K L+C
Sbjct:   145 GICDNLLTCVVRAWDISRPLLFCPAMNTAMWQHPITAQQVSTIKAFGYAEIPCIAKKLVC 204

Query:    62 GDTGLGAMAEVDTI 75
             GD G GAMAEV TI
Sbjct:   205 GDEGKGAMAEVSTI 218

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|1306267 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Rattus norvegicus (taxid:10116)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 51/74 (68%), Positives = 62/74 (83%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD +KP+LFCPAMNT MW HP+T   +  LK++GY EIPCVSK L+C
Sbjct:   114 GICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVGQLKAFGYVEIPCVSKKLVC 173

Query:    62 GDTGLGAMAEVDTI 75
             GD GLGAMAEV+ I
Sbjct:   174 GDQGLGAMAEVEII 187

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|D3ZZZ5 Ppcdc "Protein Ppcdc" [Rattus norvegicus (taxid:10116)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 51/74 (68%), Positives = 62/74 (83%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD +KP+LFCPAMNT MW HP+T   +  LK++GY EIPCVSK L+C
Sbjct:   152 GICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVGQLKAFGYVEIPCVSKKLVC 211

Query:    62 GDTGLGAMAEVDTI 75
             GD GLGAMAEV+ I
Sbjct:   212 GDQGLGAMAEVEII 225

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|I3LFK1 PPCDC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 52/74 (70%), Positives = 63/74 (85%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD SKP+LFCPAMNT MW HP+T+  +  LK++GY EIPCV+K L+C
Sbjct:   130 GICDNLLTCVIRAWDRSKPLLFCPAMNTAMWEHPLTEQQVCQLKAFGYVEIPCVAKKLVC 189

Query:    62 GDTGLGAMAEVDTI 75
             GD GLGAMAEV TI
Sbjct:   190 GDQGLGAMAEVGTI 203

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1P6A0 PPCDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 52/74 (70%), Positives = 61/74 (82%)

Query:     2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
             G+CDNLLTC++RAWD  KP+LFCPAMNT MW HPIT   +  LK++GY EIPCV+K L+C
Sbjct:   114 GICDNLLTCVIRAWDCRKPLLFCPAMNTVMWEHPITAQQVGQLKAFGYVEIPCVAKKLVC 173

Query:    62 GDTGLGAMAEVDTI 75
             GD GLGAMAEV TI
Sbjct:   174 GDQGLGAMAEVGTI 187

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54Y51	COAC_DICDI	4, ., 1, ., 1, ., 3, 6	0.5194	0.6166	0.3756	yes	N/A
Q8BZB2	COAC_MOUSE	4, ., 1, ., 1, ., 3, 6	0.7027	0.6166	0.3627	yes	N/A
Q96CD2	COAC_HUMAN	4, ., 1, ., 1, ., 3, 6	0.7162	0.6166	0.3627	yes	N/A
P94063	HAL3B_ARATH	4, ., 1, ., 1, ., 3, 6	0.5945	0.6166	0.3681	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	120
PLN02496	209	PLN02496, PLN02496, probable phosphopantothenoylcy	2e-29
PRK05579	399	PRK05579, PRK05579, bifunctional phosphopantotheno	4e-28
PRK07313	182	PRK07313, PRK07313, phosphopantothenoylcysteine de	3e-27
TIGR02113	177	TIGR02113, coaC_strep, phosphopantothenoylcysteine	1e-22
TIGR00521	390	TIGR00521, coaBC_dfp, phosphopantothenoylcysteine	4e-19
COG0452	392	COG0452, Dfp, Phosphopantothenoylcysteine syntheta	6e-18
pfam02441	132	pfam02441, Flavoprotein, Flavoprotein	8e-14
PRK13982	475	PRK13982, PRK13982, bifunctional SbtC-like/phospho	4e-12

>gnl|CDD|215274 PLN02496, PLN02496, probable phosphopantothenoylcysteine decarboxylase

 Score =  104 bits (261), Expect = 2e-29
 Identities = 43/70 (61%), Positives = 52/70 (74%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLLTCI+RAWD+SKP+   PAMNT MWN+P T+ H+ ++   G   IP V+K L C
Sbjct: 116 GLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLAC 175

Query: 62  GDTGLGAMAE 71
           GD G GAMAE
Sbjct: 176 GDYGNGAMAE 185

Length = 209

>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

 Score =  105 bits (264), Expect = 4e-28
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1   MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLM 60
            G+ D+LLT  L A   + P+L  PAMNT+MW +P T+ ++ TL+S G E I   S  L 
Sbjct: 101 HGIADDLLTTTLLA--TTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLA 158

Query: 61  CGDTGLGAMAEVDTI 75
           CGD G G MAE + I
Sbjct: 159 CGDVGPGRMAEPEEI 173

Length = 399

>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated

 Score = 98.5 bits (246), Expect = 3e-27
 Identities = 32/74 (43%), Positives = 47/74 (63%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+ D+L+T +  A   + P L  PAMNTKM+ +P T+ ++ TLK  G +EI      L C
Sbjct: 97  GIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLAC 156

Query: 62  GDTGLGAMAEVDTI 75
           GD G GA+A+++TI
Sbjct: 157 GDEGYGALADIETI 170

Length = 182

>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase, streptococcal

 Score = 86.8 bits (215), Expect = 1e-22
 Identities = 34/74 (45%), Positives = 45/74 (60%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G  DN++T +  A     P L  PAMNTKM+ +PIT+ +I  LK  GY+EI      L C
Sbjct: 96  GFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLAC 155

Query: 62  GDTGLGAMAEVDTI 75
           GD G GA+A++D I
Sbjct: 156 GDYGRGALADLDDI 169

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 177

>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase

 Score = 80.9 bits (200), Expect = 4e-19
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+ D+L++    A   S PI+  PAMN  M+N+P  + +I  LK  GY  I   S  L C
Sbjct: 98  GIADDLVSTTALA--ASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLAC 155

Query: 62  GDTGLGAMAEVDTI 75
           GD G G +AE +TI
Sbjct: 156 GDEGKGRLAEPETI 169

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 390

>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

 Score = 77.4 bits (191), Expect = 6e-18
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 20/122 (16%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+ DNL T  L A     P++  PAMN  M+ HP T+ ++  LKS G   I  +   L  
Sbjct: 99  GIADNLSTTTLLAA--KAPLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGEL-- 154

Query: 62  GDTGLGAMAEVDTIKYGFVPNTIRKST--------------EPQDPNNFVDNNA-GITEY 106
            D G G +AE + I        ++                 E  DP  F+ N + G   +
Sbjct: 155 ADVGDGRLAEPEEI-VEAALALLKTPDLKGKKVLITAGPTREYIDPVRFISNRSSGKMGF 213

Query: 107 SL 108
           +L
Sbjct: 214 AL 215

Length = 392

>gnl|CDD|217035 pfam02441, Flavoprotein, Flavoprotein

 Score = 62.6 bits (153), Expect = 8e-14
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 2   GLCDNLLTCILRAWD-FSKPILFCPAMNTKMWNHPIT 37
           G+ DNLLT    A     KP++  PAMN  MW +PIT
Sbjct: 96  GIADNLLTRAALAALKERKPLVLAPAMNPLMWENPIT 132

This family contains diverse flavoprotein enzymes. This family includes epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance. dipicolinate synthase catalyzes the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-). Length = 132

>gnl|CDD|172484 PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI-PCVSKTLM 60
           GL D+L + IL A +  +PIL  PAMN  MWN+P T+ ++  LK  G   I P   +   
Sbjct: 166 GLADDLASAILLAAN--RPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAE 223

Query: 61  CGDTGLGAMAEVDTI 75
            G+ G+G MAE   I
Sbjct: 224 RGEAGVGRMAEPLEI 238

Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	100.0
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	100.0
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	100.0
COG0452	392	Dfp Phosphopantothenoylcysteine synthetase/decarbo	99.98
TIGR02113	177	coaC_strep phosphopantothenoylcysteine decarboxyla	99.97
PLN02496	209	probable phosphopantothenoylcysteine decarboxylase	99.96
PRK07313	182	phosphopantothenoylcysteine decarboxylase; Validat	99.95
KOG0672|consensus	218		99.92
PRK06029	185	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov	99.57
TIGR00421	181	ubiX_pad polyprenyl P-hydroxybenzoate and phenylac	99.54
PRK08305	196	spoVFB dipicolinate synthase subunit B; Reviewed	99.51
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	99.48
PRK05920	204	aromatic acid decarboxylase; Validated	99.47
TIGR02852	187	spore_dpaB dipicolinic acid synthetase, B subunit.	99.41
PRK09620	229	hypothetical protein; Provisional	99.36
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	99.28
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	99.24
TIGR02699	174	archaeo_AfpA archaeoflavoprotein AfpA. The prototy	99.0
COG0163	191	UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase	97.81
TIGR02536	207	eut_hyp ethanolamine utilization protein. This fam	93.09
COG1036	187	Archaeal flavoproteins [Energy production and conv	92.86
TIGR02700	234	flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T	92.43
KOG2728|consensus	302		82.06

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=100.00  E-value=1.4e-43  Score=299.03  Aligned_cols=113  Identities=33%  Similarity=0.501  Sum_probs=106.2

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccc-cCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLM-CGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~la-cg~~G~g~m~~~~~I~~~v   79 (120)
                      +|||||++++++++.  ++|++|+|+||+.||+||++|+|+++|+++|++|++|..|.|| ||++|+||||+|++|++++
T Consensus       165 ~GiADnLlt~v~La~--~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v  242 (475)
T PRK13982        165 NGLADDLASAILLAA--NRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAA  242 (475)
T ss_pred             ccccCcHHHHHHHhc--CCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCCcCCCCCCCHHHHHHHH
Confidence            699999999998886  8999999999999999999999999999999999999999999 7999999999999999988


Q ss_pred             ccC----------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          80 VPN----------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        80 ~~~----------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      .+.                ++|+|+|+|||||||||+ |||||++||++++.+
T Consensus       243 ~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~  295 (475)
T PRK13982        243 EALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA  295 (475)
T ss_pred             HHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC
Confidence            532                368999999999999999 799999999999874

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=100.00  E-value=4.6e-42  Score=284.62  Aligned_cols=113  Identities=39%  Similarity=0.588  Sum_probs=106.9

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||+++++++++  ++|++++||||+.||.||++|+|+++|+++|++|++|..|.||||++|+||||+|++|++.+.
T Consensus       101 ~GiaDnllt~~~la~--~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr~~~~~~I~~~~~  178 (399)
T PRK05579        101 HGIADDLLTTTLLAT--TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAE  178 (399)
T ss_pred             cccCCcHHHHHHHhc--CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCCCcCCCCCCCHHHHHHHHH
Confidence            699999999998887  899999999999999999999999999999999999999999999999999999999999886


Q ss_pred             cC-------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          81 PN-------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        81 ~~-------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      +.             ++|+|+|+|||||||||+ ||+||++||++++.+
T Consensus       179 ~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~  227 (399)
T PRK05579        179 RALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARR  227 (399)
T ss_pred             HHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHC
Confidence            43             367999999999999999 699999999999874

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=100.00  E-value=2.2e-39  Score=268.07  Aligned_cols=113  Identities=36%  Similarity=0.524  Sum_probs=106.1

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||++++++.+.  .+|++++|+||+.||+||++++|+++|+++|++|++|..|.+|||++|+||||+|++|++.+.
T Consensus        97 ~GiaDnLlt~~~~~~--~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~  174 (390)
T TIGR00521        97 HGIADDLVSTTALAA--SAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETIVKAAE  174 (390)
T ss_pred             cccCCcHHHHHHHHh--CCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCCCCCCHHHHHHHHH
Confidence            699999999998887  599999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cC--------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          81 PN--------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        81 ~~--------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      +.              ++|+|+|+|||||||||+ ||+||++||++++.+
T Consensus       175 ~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~  224 (390)
T TIGR00521       175 REFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKR  224 (390)
T ss_pred             HHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHC
Confidence            43              367899999999999999 799999999999874

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

Probab=99.98  E-value=9.8e-33  Score=228.60  Aligned_cols=111  Identities=32%  Similarity=0.439  Sum_probs=103.4

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|++||+++++++++  ..|++++||||+.||.||++|+|+++|+++|+.+|+|..|.++  +.|.|+|+++++|+..+.
T Consensus        98 ~g~aD~~~t~~~~a~--~~p~~~aPamn~~M~~~~~tq~n~~~l~~~g~~~I~p~~~~~a--~~g~g~~~e~~~Iv~~~~  173 (392)
T COG0452          98 VGIADNLSTTTLLAA--KAPLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGELA--DVGDGRLAEPEEIVEAAL  173 (392)
T ss_pred             HhhhccHHHHHHHHh--cCcEEEecCcCHHHhhCHHHHHHHHHHHHCCcEEECccccccc--ccccccCCCHHHHHHHHH
Confidence            599999999998887  5699999999999999999999999999999999999999999  999999999999999765


Q ss_pred             cC-------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          81 PN-------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        81 ~~-------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      +.             ++|+|+|+|||||||||+ |||||++||++++.+
T Consensus       174 ~~~~~~~l~gk~Vlit~G~t~E~idpvr~itn~ssGk~g~alA~a~~~~  222 (392)
T COG0452         174 ALLKTPDLKGKKVLITAGPTREYIDPVRFISNRSSGKMGFALAAAAKRR  222 (392)
T ss_pred             hhcccccccCcEEEecCCCCccCCccceeeeccccccccHHHHHHHHHc
Confidence            32             378999999999999999 799999999999875

>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal

Probab=99.97  E-value=5.6e-31  Score=197.91  Aligned_cols=82  Identities=41%  Similarity=0.638  Sum_probs=78.7

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||++++++++++.++||+++|+||+.||+||++|+|+++|+++|+.|++|.+|.||||++|+||||+|++|++.+.
T Consensus        95 ~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g~~g~g~~~~~~~i~~~~~  174 (177)
T TIGR02113        95 HGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACGDYGRGALADLDDILQTIK  174 (177)
T ss_pred             cCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCCCccccCCCCHHHHHHHHH
Confidence            69999999999889988899999999999999999999999999999999999999999999999999999999999886


Q ss_pred             cC
Q psy7735          81 PN   82 (120)
Q Consensus        81 ~~   82 (120)
                      +.
T Consensus       175 ~~  176 (177)
T TIGR02113       175 EI  176 (177)
T ss_pred             Hh
Confidence            54

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.

>PLN02496 probable phosphopantothenoylcysteine decarboxylase

Probab=99.96  E-value=9.9e-30  Score=195.97  Aligned_cols=83  Identities=53%  Similarity=0.894  Sum_probs=80.0

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||+++++++|++.++|++++|+||+.||+||+||+|+++|+++|++|++|.+|.||||++|.||||+|++|+..+.
T Consensus       115 ~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~  194 (209)
T PLN02496        115 GGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGNGAMAEPSLIYSTVR  194 (209)
T ss_pred             cccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCcccCCCcCCCCCCCHHHHHHHHH
Confidence            69999999999999988999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCc
Q psy7735          81 PNT   83 (120)
Q Consensus        81 ~~~   83 (120)
                      ..+
T Consensus       195 ~~l  197 (209)
T PLN02496        195 LFL  197 (209)
T ss_pred             HHH
Confidence            765

>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated

Probab=99.95  E-value=1.3e-28  Score=185.76  Aligned_cols=84  Identities=38%  Similarity=0.587  Sum_probs=80.5

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||++++++.+++.++|++++|+||+.||.||++++|+++|+++|++|++|..|.||||++|+|||++|++|++.+.
T Consensus        96 ~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~  175 (182)
T PRK07313         96 HGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIE  175 (182)
T ss_pred             ccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHH
Confidence            69999999999889988999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCcC
Q psy7735          81 PNTI   84 (120)
Q Consensus        81 ~~~~   84 (120)
                      +.+.
T Consensus       176 ~~~~  179 (182)
T PRK07313        176 NTLK  179 (182)
T ss_pred             HHhc
Confidence            7664

>KOG0672|consensus

Probab=99.92  E-value=5.3e-26  Score=172.99  Aligned_cols=83  Identities=55%  Similarity=0.895  Sum_probs=79.3

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHH--hCCcEEecCCCCccccCCCCCCCCCChhhHHhc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLK--SWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYG   78 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~--~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~   78 (120)
                      +|+||||+|++.+||+..+|++++||||+.||+||.|++++..|+  ..|+.++.|.++.|+|||+|.|.|++|.+|+..
T Consensus       121 ~GlCDNLLTsviRAW~~skPil~aPaMnT~mw~np~T~~hl~~l~~~~~~~~~i~pieK~licGDiGlG~Mae~~~IV~~  200 (218)
T KOG0672|consen  121 NGLCDNLLTSVIRAWDPSKPILLAPAMNTLMWNNPMTKKHLTSLKEEYPGITVIKPIEKVLICGDIGLGGMAEWGTIVSK  200 (218)
T ss_pred             hhhhhHHHHHHHHHhccCCceEeccchhhhhhcCcchHHHHHHHHHhcCCcEEecchheeEeccccCccccccHHHHHHH
Confidence            699999999999999999999999999999999999999999997  479999999999999999999999999999999


Q ss_pred             cccCc
Q psy7735          79 FVPNT   83 (120)
Q Consensus        79 v~~~~   83 (120)
                      |...+
T Consensus       201 V~~~~  205 (218)
T KOG0672|consen  201 VRRKL  205 (218)
T ss_pred             HHHHH
Confidence            97554

>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional

Probab=99.57  E-value=5.4e-15  Score=112.18  Aligned_cols=72  Identities=17%  Similarity=0.142  Sum_probs=59.4

Q ss_pred             CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +|||||++++++ .++..++|++++|   ..||.||++|+|+++|+++|+.|++|..|.++       +.-+.+++++.+
T Consensus        97 ~GiaDnLlt~~a~~~L~~~~pvii~P---~~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a-------~p~~~~~~~~~~  166 (185)
T PRK06029         97 HGYSDNLITRAADVMLKERRRLVLCV---RETPLHLGHLRNMTKLAEMGAIIMPPVPAFYH-------RPQTLEDMVDQT  166 (185)
T ss_pred             ccccCcHHHHHHHHHHhcCCCEEEEe---ccccCCHHHHHHHHHHHHCcCEEECCCccccc-------CCCCHHHHHHHH
Confidence            699999999753 3455689999999   47999999999999999999999999997664       444677777776


Q ss_pred             ccC
Q psy7735          80 VPN   82 (120)
Q Consensus        80 ~~~   82 (120)
                      ...
T Consensus       167 v~~  169 (185)
T PRK06029        167 VGR  169 (185)
T ss_pred             HHH
Confidence            543

>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases

Probab=99.54  E-value=1.8e-14  Score=108.74  Aligned_cols=71  Identities=17%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +|||||++++++ .++..++|++|+|   ..||.||++|+|+++|+++|+.|++|..|.       .+++.+++++++.+
T Consensus        94 ~GiaD~Llt~~a~~~L~~~~pv~i~P---~~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~-------~~~p~~~~~~~~~i  163 (181)
T TIGR00421        94 NGYADNLITRAADVCLKERRKLVLVP---RETPLNSIHLENMLRLSRMGAIILPPMPAF-------YTRPKSVEDMIDFI  163 (181)
T ss_pred             cccCCCHHHHHHHHHHhcCCCEEEEe---CCCcCCHHHHHHHHHHHHCCCEEECCCCcc-------cCCCCCHHHHHHHH
Confidence            699999999873 3565699999999   599999999999999999999999999854       57788999977666


Q ss_pred             cc
Q psy7735          80 VP   81 (120)
Q Consensus        80 ~~   81 (120)
                      ..
T Consensus       164 ~~  165 (181)
T TIGR00421       164 VG  165 (181)
T ss_pred             HH
Confidence            53

In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.

>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed

Probab=99.51  E-value=3.2e-14  Score=109.00  Aligned_cols=78  Identities=9%  Similarity=0.027  Sum_probs=58.8

Q ss_pred             CCCcchHHHHHHH-hccCCCCEEEEecCChhhhhChHHHHHHHHHH-hCCcEEecCCCCccccCCCCC--CCCCChhhHH
Q psy7735           1 MGLCDNLLTCILR-AWDFSKPILFCPAMNTKMWNHPITKSHINTLK-SWGYEEIPCVSKTLMCGDTGL--GAMAEVDTIK   76 (120)
Q Consensus         1 ~GiaDnllt~~~~-a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~-~~G~~vi~P~~g~lacg~~G~--g~m~~~~~I~   76 (120)
                      +|||||++++++. +++.++|++++||||+.||+||   +|+++|+ ++|+++|+  .|.-.|  .+|  --..+|+.+.
T Consensus       103 ~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~---~ni~~L~~~~g~~~i~--~~~~~~--~~~~~~~~~~~~~~~  175 (196)
T PRK08305        103 NAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNA---KNLGRLLNTKNIYFVP--FGQDDP--VKKPNSLVARMDLLI  175 (196)
T ss_pred             ccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCH---HHHHHHHhcCCEEEEe--cCCCCC--CCCchhHHhhHHhhH
Confidence            6999999998854 5788999999999999999996   9999998 59999883  222111  222  1245888888


Q ss_pred             hccccCcCC
Q psy7735          77 YGFVPNTIR   85 (120)
Q Consensus        77 ~~v~~~~~~   85 (120)
                      +.+..++-+
T Consensus       176 ~~~~~~~~~  184 (196)
T PRK08305        176 DTVEEALEG  184 (196)
T ss_pred             HHHHHHHhC
Confidence            877766543

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=99.48  E-value=1.6e-14  Score=109.44  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          83 TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        83 ~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      ++|+|+|+|||||||||+ ||+||++||++++++
T Consensus         9 TaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~   42 (185)
T PF04127_consen    9 TAGPTREPIDPVRFITNRSSGKMGAALAEEAARR   42 (185)
T ss_dssp             EESB-EEESSSSEEEEES--SHHHHHHHHHHHHT
T ss_pred             ECCCccccCCCceEecCCCcCHHHHHHHHHHHHC
Confidence            689999999999999999 799999999999874

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK05920 aromatic acid decarboxylase; Validated

Probab=99.47  E-value=1.5e-13  Score=105.79  Aligned_cols=71  Identities=17%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +|||||++++++ .++..++|++++|+   .||.||++|+|+++|+++|++|++|..|.+       +++-+.+++++.+
T Consensus       112 ~GiaD~ll~~~a~~~L~~~~pvvi~P~---~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y-------~~p~~~~~~~~f~  181 (204)
T PRK05920        112 HGLSDNLIERAADVVLKERRKLILVPR---ETPLSLIHLENMLKLAEAGAIILPAIPAFY-------HKPQTIDDLVDFV  181 (204)
T ss_pred             ccccCcHHHHHHHHHHhcCCCEEEEeC---CCCCCHHHHHHHHHHHHCCCEEeCCccccc-------CCCCCHHHHHHHH
Confidence            699999999864 56666999999996   499999999999999999999999998652       4555667777766


Q ss_pred             cc
Q psy7735          80 VP   81 (120)
Q Consensus        80 ~~   81 (120)
                      ..
T Consensus       182 ~~  183 (204)
T PRK05920        182 VA  183 (204)
T ss_pred             HH
Confidence            54

>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit

Probab=99.41  E-value=3.9e-13  Score=102.32  Aligned_cols=79  Identities=11%  Similarity=0.022  Sum_probs=59.4

Q ss_pred             CCCcchHHHHHHHhc-cCCCCEEEEecCChhhhhChHHHHHHHHHH-hCCcEEecCCCCccccCCCCCC--CCCChhhHH
Q psy7735           1 MGLCDNLLTCILRAW-DFSKPILFCPAMNTKMWNHPITKSHINTLK-SWGYEEIPCVSKTLMCGDTGLG--AMAEVDTIK   76 (120)
Q Consensus         1 ~GiaDnllt~~~~a~-~~~~PvliaPaMn~~M~~~P~~~~nl~~L~-~~G~~vi~P~~g~lacg~~G~g--~m~~~~~I~   76 (120)
                      +||+||+++.++.++ +.++|++++|+||++||+|+   +|+++|. ++|++||+=-  .=.  ..+|-  -.++++.|.
T Consensus        98 ~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~---~Ni~~L~~~~g~~~v~f~--qd~--~~~k~~s~~~~~~~~~  170 (187)
T TIGR02852        98 NAMTDSPVLMAAKATLRNNKPVVLAISTNDALGLNA---VNLMRLLNTKNIYFVPFG--QDD--PFKKPNSLVAKMDYLI  170 (187)
T ss_pred             ccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCH---HHHHHHHHcCCEEEEeec--CCC--CCCCchhHHhhHHhhH
Confidence            699999998885544 67899999999999999996   9999994 8999998411  100  12331  246888888


Q ss_pred             hccccCcCCC
Q psy7735          77 YGFVPNTIRK   86 (120)
Q Consensus        77 ~~v~~~~~~~   86 (120)
                      +.+..++-|.
T Consensus       171 ~~~~~a~~~~  180 (187)
T TIGR02852       171 PTIEEALQGR  180 (187)
T ss_pred             HHHHHHHhCC
Confidence            8887777553

Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.

>PRK09620 hypothetical protein; Provisional

Probab=99.36  E-value=3.5e-13  Score=104.88  Aligned_cols=34  Identities=18%  Similarity=-0.078  Sum_probs=31.2

Q ss_pred             CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      .++|||+|+|||||||||+ ||+||++||++++.+
T Consensus         8 ITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~   42 (229)
T PRK09620          8 ITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK   42 (229)
T ss_pred             EeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC
Confidence            4689999999999999999 699999999999763

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=99.28  E-value=1.9e-12  Score=100.42  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=31.0

Q ss_pred             CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      .++|||+|+|||||||||+ ||+||++||++++.+
T Consensus         5 iT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~   39 (229)
T PRK06732          5 ITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAA   39 (229)
T ss_pred             EcCCCcccccCCceeecCccchHHHHHHHHHHHhC
Confidence            3689999999999999999 799999999998763

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=99.24  E-value=4.7e-12  Score=98.05  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      .++|||+|+|||||||||+ ||.||++||++++.+
T Consensus         4 iT~G~T~e~iD~VR~itN~SSGgIG~AIA~~la~~   38 (227)
T TIGR02114         4 VTSGGTSEPIDSVRSITNHSTGHLGKIITETFLSA   38 (227)
T ss_pred             EccCCccCCCCCceeecCCcccHHHHHHHHHHHHC
Confidence            3689999999999999999 699999999999763

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA

Probab=99.00  E-value=5.3e-10  Score=84.32  Aligned_cols=53  Identities=21%  Similarity=0.314  Sum_probs=46.9

Q ss_pred             CCCcchHHHHH-HHhccCCCCEEEEecCC------hhhhhChHHH--------HHHHHHHhC-CcEEec
Q psy7735           1 MGLCDNLLTCI-LRAWDFSKPILFCPAMN------TKMWNHPITK--------SHINTLKSW-GYEEIP   53 (120)
Q Consensus         1 ~GiaDnllt~~-~~a~~~~~PvliaPaMn------~~M~~~P~~~--------~nl~~L~~~-G~~vi~   53 (120)
                      +|||||+++++ +.+++.++|++++|+||      +.+-.||+++        +|+++|+++ |+.|++
T Consensus        97 ~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L~~~~gv~v~~  165 (174)
T TIGR02699        97 YGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKLAQMEGIEILT  165 (174)
T ss_pred             ccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHHhhCCCeEEEC
Confidence            69999999987 66778899999999985      4588899999        999999998 999985

The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.

>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]

Probab=97.81  E-value=5.4e-05  Score=57.95  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             CCCcchHHHHH-HHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCI-LRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~-~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +|++|||++-. -.++..++|++++|   ..|--|-.-.+|+-+|.++|.+|++|..+.       .-+.-+.|++++.+
T Consensus        99 ~G~~dnLi~RAAdV~LKErR~LVLv~---REtPl~~ihLeNMlkl~~~GaiI~Pp~PaF-------Y~~P~sieDlvd~~  168 (191)
T COG0163          99 HGFADNLITRAADVALKERRPLVLVP---RETPLSLIHLENMLKLAEMGAIIMPPMPAF-------YHKPQSIEDLVDFV  168 (191)
T ss_pred             hcccccHHHHHHHHHHhhCCceEEEe---ccCCccHHHHHHHHHHHHCCCEecCCChhh-------hcCCCCHHHHHHHH
Confidence            69999999976 67788899999999   889999999999999999999999998743       34566889999887


Q ss_pred             ccC
Q psy7735          80 VPN   82 (120)
Q Consensus        80 ~~~   82 (120)
                      ...
T Consensus       169 v~r  171 (191)
T COG0163         169 VGR  171 (191)
T ss_pred             HHH
Confidence            643

>TIGR02536 eut_hyp ethanolamine utilization protein

Probab=93.09  E-value=0.27  Score=38.11  Aligned_cols=55  Identities=18%  Similarity=0.134  Sum_probs=40.6

Q ss_pred             CCCcchHHHHH-HHhccCCCCEEEEe-cCChhhhhC-------hHHHHHHHHHHhCCcEEecCC
Q psy7735           1 MGLCDNLLTCI-LRAWDFSKPILFCP-AMNTKMWNH-------PITKSHINTLKSWGYEEIPCV   55 (120)
Q Consensus         1 ~GiaDnllt~~-~~a~~~~~PvliaP-aMn~~M~~~-------P~~~~nl~~L~~~G~~vi~P~   55 (120)
                      +|++||+.+.. +.++=.+|||+++= ++...-|.+       -.++++.++|+++|+.++...
T Consensus        72 lGi~d~~~~~~I~~~LL~GK~V~v~~eg~e~~~y~~~~p~~l~~~~~~y~~kL~sfGIk~~~~~  135 (207)
T TIGR02536        72 HGQETNEKEKFIIAFLLEGKPIYILKPGIEYSKYENTAPYALKQKFQEYEEKLQSFGIEFIDSE  135 (207)
T ss_pred             ccCCCCHHHHHHHHHHHCCCeEEEEecccchhccCccCCHHHHHHHHHHHHHHHHcCeEEeccc
Confidence            59999999866 66666699999873 344433444       247899999999999998543

This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.

>COG1036 Archaeal flavoproteins [Energy production and conversion]

Probab=92.86  E-value=0.078  Score=40.33  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             CCCcchHHHHH-HHhccCCCCEEEEecCCh--------------hhhhChHHHHHHHHHHh-CCcEEe
Q psy7735           1 MGLCDNLLTCI-LRAWDFSKPILFCPAMNT--------------KMWNHPITKSHINTLKS-WGYEEI   52 (120)
Q Consensus         1 ~GiaDnllt~~-~~a~~~~~PvliaPaMn~--------------~M~~~P~~~~nl~~L~~-~G~~vi   52 (120)
                      +||||+|+|.. ..|.....|+.++|.=..              .|.-...=-+|.++|++ .|+.|+
T Consensus       107 ~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~G~V~t~~~gGk~~el~vR~vDvenv~kl~~megi~Vl  174 (187)
T COG1036         107 YGIADTLVTNAVAQAGKGKVPVYIVPVDYKEGTVETTLPGGKKLELRVRKVDVENVEKLAQMEGIEVL  174 (187)
T ss_pred             hhhHHHHHHHHHHHhcCCCCcEEEecccccCCeEEEcCCCCcEEEEEEeecchHHHHHHHhccCeEEe
Confidence            69999999855 788777899999996332              12223344678888865 566665

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family

Probab=92.43  E-value=0.12  Score=40.13  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=21.4

Q ss_pred             CCCcchHHHHH-HHhccCCCCEEEEec
Q psy7735           1 MGLCDNLLTCI-LRAWDFSKPILFCPA   26 (120)
Q Consensus         1 ~GiaDnllt~~-~~a~~~~~PvliaPa   26 (120)
                      +|||||+++.+ +.+....+|++++|+
T Consensus       104 ~GiaD~lit~t~~~~~k~~~pv~~vP~  130 (234)
T TIGR02700       104 HGIADSLVTNAVAQAGKGDVPVWVVPV  130 (234)
T ss_pred             ccccchHHHHHHHHHhccCCCeEEEee
Confidence            69999999877 555556799999996

This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.

>KOG2728|consensus

Probab=82.06  E-value=0.67  Score=37.58  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=26.8

Q ss_pred             CcCCCCccCC--CcceeeecC-CcHHHHHHHHHHHH
Q psy7735          82 NTIRKSTEPQ--DPNNFVDNN-AGITEYSLTGFLYF  114 (120)
Q Consensus        82 ~~~~~t~E~i--D~vR~isN~-SG~mg~~ia~~~~~  114 (120)
                      .+.|||.-++  .+||||.|. +|.-|.+=|+.+..
T Consensus        36 VTSGGTtVPLE~ntVRFiDNFSaGtRGAaSAE~Fl~   71 (302)
T KOG2728|consen   36 VTSGGTTVPLEQNTVRFIDNFSAGTRGAASAEYFLA   71 (302)
T ss_pred             EecCCeEeecccCceEeeeccCcCCccchhHHHHHh
Confidence            3678997776  589999999 59999998877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
1qzu_A	206	Crystal Structure Of Human Phosphopantothenoylcyste		6e-30
1e20_A	209	The Fmn Binding Protein Athal3 Length = 209		2e-20
1mvl_A	209	Ppc Decarboxylase Mutant C175s Length = 209		2e-19
3qjg_A	175	Epidermin Biosynthesis Protein Epid From Staphyloco		9e-05

>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine Decarboxylase Length = 206

Iteration: 1
 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 63/74 (85%)
Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT   ++ LK++GY EIPCV+K L+C
Sbjct: 116 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 175
Query: 62  GDTGLGAMAEVDTI 75
           GD GLGAMAEV TI
Sbjct: 176 GDEGLGAMAEVGTI 189

>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3 Length = 209

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 52/74 (70%)
Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLLTCI+RAWD++KP+   PAMNT MWN+P T+ H+ +L   G   IP + K L C
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAC 175
Query: 62  GDTGLGAMAEVDTI 75
           GD G GAMAE   I
Sbjct: 176 GDYGNGAMAEPSLI 189

>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s Length = 209

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLLTCI+RAWD++KP+   PAMNT MWN+P T+ H+ +L   G   IP + K L  
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAS 175
Query: 62  GDTGLGAMAEVDTI 75
           GD G GAMAE   I
Sbjct: 176 GDYGNGAMAEPSLI 189

>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus Aureus Length = 175

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPC 54
           G+CDNLL  I     F K  +F P MN +MW +P+T+++I  LK +G    P 
Sbjct: 96  GICDNLLLTICHTA-FEKLSIF-PNMNLRMWENPVTQNNIRLLKDYGVSIYPA 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
1mvl_A	209	PPC decarboxylase athal3A; flavoprotein, active si	2e-42
1qzu_A	206	Hypothetical protein MDS018; alpha-beta sandwich,	1e-41
1p3y_1	194	MRSD protein; flavoprotein, FMN, rossmann fold, HF	5e-22
3qjg_A	175	Epidermin biosynthesis protein EPID; structural ge	5e-22
1g63_A	181	Epidermin modifying enzyme EPID; alpha, beta prote	7e-22
3mcu_A	207	Dipicolinate synthase, B chain; NESG, structural g	1e-07
3lqk_A	201	Dipicolinate synthase subunit B; flavoprotein, PSI	5e-04

>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Length = 209

 Score =  137 bits (348), Expect = 2e-42
 Identities = 42/74 (56%), Positives = 51/74 (68%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           GLCDNLLTCI+RAWD++KP+   PAMNT MWN+P T+ H+ +L   G   IP + K L  
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAS 175

Query: 62  GDTGLGAMAEVDTI 75
           GD G GAMAE   I
Sbjct: 176 GDYGNGAMAEPSLI 189

>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Length = 206

 Score =  135 bits (343), Expect = 1e-41
 Identities = 53/74 (71%), Positives = 63/74 (85%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT   ++ LK++GY EIPCV+K L+C
Sbjct: 116 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 175

Query: 62  GDTGLGAMAEVDTI 75
           GD GLGAMAEV TI
Sbjct: 176 GDEGLGAMAEVGTI 189

>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Length = 194

 Score = 85.0 bits (211), Expect = 5e-22
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIP---CVSKT 58
           G+  NL+   + A       +F P MN  MWN  +   +I  L+  G+  I     ++  
Sbjct: 101 GVAMNLVATTVLAHP--HNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAFE 158

Query: 59  LMCGDTGLG-AMAEVDTI 75
           +  G       +   D  
Sbjct: 159 IATGTRKPNRGLITPDKA 176

>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} Length = 175

 Score = 84.5 bits (210), Expect = 5e-22
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIP---CVSKT 58
           G+CDNLL  I       + +   P MN +MW +P+T+++I  LK +G    P     S  
Sbjct: 96  GICDNLLLTICHTAF--EKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANISESYE 153

Query: 59  LMCGDTGLGAMA-EVDTI 75
           L         +A E   +
Sbjct: 154 LASKTFKKNVVAPEPYKV 171

>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A* Length = 181

 Score = 84.2 bits (209), Expect = 7e-22
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
           G+CDNLLT +       + +   P MN +MW +P  + +I+ LK+   +           
Sbjct: 93  GICDNLLTTVCLTGY--QKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFE 150

Query: 62  GDTG----LGAMAEVDTIKYGFVPNTIRKSTEPQD 92
             +G       M  ++ +   FV N  ++   P D
Sbjct: 151 ISSGRYKNNITMPNIENV-LNFVLNNEKR---PLD 181

>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Length = 207

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 2   GLCDNLLT-CILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI 52
            + D+ +           KP++   + N  +  + +    +  L +      
Sbjct: 104 AMTDSPVLMAAKATLRNGKPVVLAVSTNDALGLNGVN---LMRLMATKNIYF 152

>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans} Length = 201

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 2   GLCDNLLTCILRAW-DFSKPILFCPAMNTKMWNHPITKSHINTLKSWG 48
            + D+ +    +A     KP++   + N  +        +I  L +  
Sbjct: 106 AMTDSPVLMGAKATLRNGKPVVVGISTNDALGL---NGINIMRLMATK 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
1mvl_A	209	PPC decarboxylase athal3A; flavoprotein, active si	99.95
1qzu_A	206	Hypothetical protein MDS018; alpha-beta sandwich,	99.94
3qjg_A	175	Epidermin biosynthesis protein EPID; structural ge	99.94
1p3y_1	194	MRSD protein; flavoprotein, FMN, rossmann fold, HF	99.93
1g63_A	181	Epidermin modifying enzyme EPID; alpha, beta prote	99.93
3mcu_A	207	Dipicolinate synthase, B chain; NESG, structural g	99.89
3lqk_A	201	Dipicolinate synthase subunit B; flavoprotein, PSI	99.71
3zqu_A	209	Probable aromatic acid decarboxylase; lyase; HET:	99.58
2ejb_A	189	Probable aromatic acid decarboxylase; phenylacryli	99.58
1sbz_A	197	Probable aromatic acid decarboxylase; FMN binding,	99.52
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	99.39
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.3
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	99.27

>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*

Probab=99.95  E-value=4.2e-29  Score=191.10  Aligned_cols=83  Identities=51%  Similarity=0.839  Sum_probs=71.0

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||+++++++|++.++|++++|+||+.||+||++|+|+++|+++|++|++|..|.+|||++|+|||++|++|++.+.
T Consensus       115 ~GiaDnLlt~~~~A~d~~~pvvlaPaMN~~M~e~P~t~~nl~~L~~~G~~ivpP~~g~lacg~~G~gr~~~~~~Iv~~v~  194 (209)
T 1mvl_A          115 GGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEPSLIYSTVR  194 (209)
T ss_dssp             HTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC---------CCBCCCHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHhcCCCCEEEEECCChhHhhChhHHHHHHHHHHCCCEEeCCccccccCCCcCCCCCCCHHHHHHHHH
Confidence            69999999999999988899999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cCc
Q psy7735          81 PNT   83 (120)
Q Consensus        81 ~~~   83 (120)
                      ..+
T Consensus       195 ~~l  197 (209)
T 1mvl_A          195 LFW  197 (209)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1

Probab=99.94  E-value=2.5e-28  Score=186.23  Aligned_cols=83  Identities=64%  Similarity=1.199  Sum_probs=61.7

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||+++++++||+.++|++++|+||+.||.||++|+|+++|+++|++|++|..|.||||++|+|+|++|++|++.+.
T Consensus       115 ~GiaDnLlt~~~~alk~~~pvvlaPaMn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~g~lacg~~g~g~~~~p~~I~~~v~  194 (206)
T 1qzu_A          115 SGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVK  194 (206)
T ss_dssp             TTCCCSHHHHHHHTCCTTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC------------------CCHHHHHHC
T ss_pred             ccccCCHHHHHHHHhcCCCCEEEEecCCccccCCHHHHHHHHHHHHCCCEEECCccCccccCCcCCccCCCHHHHHHHHH
Confidence            79999999999889988999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCc
Q psy7735          81 PNT   83 (120)
Q Consensus        81 ~~~   83 (120)
                      +.+
T Consensus       195 ~~l  197 (206)
T 1qzu_A          195 EVL  197 (206)
T ss_dssp             CC-
T ss_pred             HHh
Confidence            766

>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0

Probab=99.94  E-value=5.7e-28  Score=180.42  Aligned_cols=76  Identities=28%  Similarity=0.426  Sum_probs=73.5

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCC---ccccCCCCCC-CCCChhhHH
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSK---TLMCGDTGLG-AMAEVDTIK   76 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g---~lacg~~G~g-~m~~~~~I~   76 (120)
                      +|||||+++++++++  ++|++++|+||+.||.||++|+|+++|+++|++|++|..|   .||||++|+| |||+|++|+
T Consensus        95 ~GiaDnLlt~~~la~--~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~P~~g~~~~lacg~~g~G~~~~~~~~i~  172 (175)
T 3qjg_A           95 NGICDNLLLTICHTA--FEKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNVVAPEPYKVL  172 (175)
T ss_dssp             TTCCCSHHHHHHHTC--GGGEEEEECEEHHHHTCHHHHHHHHHHHHTTCEECCCCEEEEEEGGGTEEEEEECCCCHHHHH
T ss_pred             ccccCCHHHHHHHHc--CCCEEEEecCChhhhcCHHHHHHHHHHHHCCCEEECCCCCCcccccCCCcCCCCCCCCHHHHH
Confidence            799999999998887  8999999999999999999999999999999999999999   9999999999 999999999


Q ss_pred             hc
Q psy7735          77 YG   78 (120)
Q Consensus        77 ~~   78 (120)
                      +.
T Consensus       173 ~~  174 (175)
T 3qjg_A          173 EF  174 (175)
T ss_dssp             HH
T ss_pred             hh
Confidence            75

>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1

Probab=99.93  E-value=5.9e-27  Score=177.20  Aligned_cols=84  Identities=21%  Similarity=0.301  Sum_probs=69.7

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCC---ccccCCCCC-CCCCChhhHH
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSK---TLMCGDTGL-GAMAEVDTIK   76 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g---~lacg~~G~-g~m~~~~~I~   76 (120)
                      +|||||++++++++.  ++|++++|+||+.||.||++|+|+++|+++|++|++|..|   .||||++|. |+|++|++|+
T Consensus       100 ~GiaDnLlt~~a~a~--~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~g~~f~lacg~~g~~g~~~~~~~iv  177 (194)
T 1p3y_1          100 NGVAMNLVATTVLAH--PHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAFEIATGTRKPNRGLITPDKAL  177 (194)
T ss_dssp             TTCCSSHHHHHHHHS--SSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBCCC------------CBCCCHHHHH
T ss_pred             hhccCCHHHHHHHHc--CCCEEEEECCChhhcCCHHHHHHHHHHHHCCCEEECCCCCcccccccCCcCcCCCCCCHHHHH
Confidence            799999999998885  8999999999999999999999999999999999999999   999999999 9999999999


Q ss_pred             hccccCcCCC
Q psy7735          77 YGFVPNTIRK   86 (120)
Q Consensus        77 ~~v~~~~~~~   86 (120)
                      +.+.+.+.+.
T Consensus       178 ~~v~~~l~~~  187 (194)
T 1p3y_1          178 LAIEKGFKER  187 (194)
T ss_dssp             HHHHHHCC--
T ss_pred             HHHHHHhccc
Confidence            9998877543

>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*

Probab=99.93  E-value=6.1e-27  Score=175.50  Aligned_cols=81  Identities=23%  Similarity=0.404  Sum_probs=69.6

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCC---ccccCC-CCCCCCCChhhHH
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSK---TLMCGD-TGLGAMAEVDTIK   76 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g---~lacg~-~G~g~m~~~~~I~   76 (120)
                      +|||||++++++++.  ++|++++||||+.||.||++|+|+++|+++|++|++|..|   .||||+ +|.|+|+++++|+
T Consensus        92 ~GiaDnllt~~~la~--~~pvvlaPamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~g~~f~lacg~~~g~g~~~~~~~iv  169 (181)
T 1g63_A           92 NGICDNLLTTVCLTG--YQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNNITMPNIENVL  169 (181)
T ss_dssp             TTCCCSHHHHHHHHT--GGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEECCCEECC----------CCEECCCHHHHH
T ss_pred             ccccCcHHHHHHHHc--CCCEEEEeCCChhhcCCHHHHHHHHHHHHCCCEEECCCCCcccccccCCccCCcCCCCHHHHH
Confidence            799999999998885  8999999999999999999999999999999999999999   999999 9999999999999


Q ss_pred             hccccCc
Q psy7735          77 YGFVPNT   83 (120)
Q Consensus        77 ~~v~~~~   83 (120)
                      +.+.+.+
T Consensus       170 ~~v~~~l  176 (181)
T 1g63_A          170 NFVLNNE  176 (181)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHh
Confidence            9998776

>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}

Probab=99.89  E-value=7.8e-24  Score=161.73  Aligned_cols=93  Identities=8%  Similarity=0.013  Sum_probs=80.0

Q ss_pred             CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +|||||++++++ .++..++|++++|+||+.||.|   ++|+.+|+++|+++++|..| +|||+.|.|+|++|++|++.+
T Consensus       103 ~GiaDnLlt~aa~~~L~~~~plvlaPamn~~m~~h---~~Nm~~L~~~G~~ii~P~~~-lacg~~g~g~mae~~~I~~~i  178 (207)
T 3mcu_A          103 NAMTDSPVLMAAKATLRNGKPVVLAVSTNDALGLN---GVNLMRLMATKNIYFVPFGQ-DAPEKKPNSMVARMELLEDTV  178 (207)
T ss_dssp             TTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTT---HHHHHHHHHBTTEEECCEEE-SCTTTSTTCEEECGGGHHHHH
T ss_pred             ccccCcHHHHHHHHHHhcCCCEEEEECCChhHHHH---HHHHHHHHHCCCEEECCCCc-cCCCCcCCcCCCCHHHHHHHH
Confidence            699999999853 3344589999999999999999   89999999999999999988 999999999999999999999


Q ss_pred             ccCcCCCCcc--CCCcceee
Q psy7735          80 VPNTIRKSTE--PQDPNNFV   97 (120)
Q Consensus        80 ~~~~~~~t~E--~iD~vR~i   97 (120)
                      ...+.|...+  .+++.||.
T Consensus       179 ~~~l~~~~~qp~~~~~~~~~  198 (207)
T 3mcu_A          179 LEALQGKQLQPVVVEKFRYM  198 (207)
T ss_dssp             HHHHTTCCCSCCBCCGGGGC
T ss_pred             HHHHhCCCCCceEecchhhc
Confidence            8887665433  34566653

>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}

Probab=99.71  E-value=7.8e-18  Score=127.81  Aligned_cols=81  Identities=11%  Similarity=-0.040  Sum_probs=72.1

Q ss_pred             CCCcchHHHHHHHh-ccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCILRA-WDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~~a-~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +|||||++++++.+ ++.++|++++|+||+.||.||.   |+.+|+++|++|++|... -+|+..+.+.+++++.|.+.|
T Consensus       105 ~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~m~~h~~---Nm~~L~~~G~~i~~P~~~-~~~~~~p~s~~a~~~~i~~tv  180 (201)
T 3lqk_A          105 NAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGI---NIMRLMATKNIYFIPFGQ-DNPQVKPNSLVARMEALPETI  180 (201)
T ss_dssp             TTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHH---HHHHHHTSTTEEECCEEE-SCTTTCTTCEEECGGGHHHHH
T ss_pred             CcccCcHHHHHHHHHhhcCCCEEEEECCChhHHHhHH---HHHHHHHCCCEEECCCCc-cccccCCCcccCCHHHHHHHH
Confidence            79999999988654 5568999999999999999999   999999999999999853 477888888899999999999


Q ss_pred             ccCcCC
Q psy7735          80 VPNTIR   85 (120)
Q Consensus        80 ~~~~~~   85 (120)
                      .+.+.+
T Consensus       181 ~~al~~  186 (201)
T 3lqk_A          181 EAALRG  186 (201)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            988755

>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0

Probab=99.58  E-value=1.7e-15  Score=115.66  Aligned_cols=70  Identities=17%  Similarity=0.251  Sum_probs=61.9

Q ss_pred             CCCcchHHHH---HHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHh
Q psy7735           1 MGLCDNLLTC---ILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKY   77 (120)
Q Consensus         1 ~GiaDnllt~---~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~   77 (120)
                      +||||||+++   ++++.  ++|++++|+   .||.||++|+|+.+|+++|++|++|..|.++       +..+.|+|++
T Consensus       113 ~GiaDnLltraadv~Lk~--~~plvl~Pa---em~~~~~~~~Nm~~L~~~G~~iipp~~g~ya-------~p~~iediv~  180 (209)
T 3zqu_A          113 TGACNNLIERAADVALKE--RRPLVLVPR---EAPFSSIHLENMLKLSNLGAVILPAAPGFYH-------QPQSVEDLVD  180 (209)
T ss_dssp             HTCCCSHHHHHHHHHHHH--TCCEEEEEC---CSSCCHHHHHHHHHHHHHTCEECCSCCCCTT-------CCCSHHHHHH
T ss_pred             ccccCcHHHHHHHHHHhc--CCcEEEEEc---ccccCHHHHHHHHHHHHCCCEEeCCCccccc-------CCCCHHHHHH
Confidence            5999999998   55554  899999998   9999999999999999999999999987654       7889999999


Q ss_pred             ccccC
Q psy7735          78 GFVPN   82 (120)
Q Consensus        78 ~v~~~   82 (120)
                      .+...
T Consensus       181 ~vv~r  185 (209)
T 3zqu_A          181 FVVAR  185 (209)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}

Probab=99.58  E-value=1.8e-15  Score=113.70  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             CCCcchHHHHHHH-hccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCILR-AWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~~-a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +|||||++++++. +++.++|++++|+   .||.||++++|+++|+++|++|++|..|.       .+++.+++++++.+
T Consensus       100 ~GiaDnLlt~~a~~~lk~~~plvl~Pa---~m~~~~~~~~N~~~L~~~G~~ivpp~~g~-------~~~p~si~div~~~  169 (189)
T 2ejb_A          100 NGINKNLIHRVGEVALKERVPLVLLVR---EAPYNEIHLENMLKITRMGGVVVPASPAF-------YHKPQSIDDMINFV  169 (189)
T ss_dssp             HTCCSSHHHHHHHHHHHHTCCEEEEEC---CSSCCHHHHHHHHHHHHTTCEEEECCCCS-------TTCCCSHHHHHHHH
T ss_pred             cCcCCcHHHHHHHHHccCCCcEEEEEC---CCCCCHHHHHHHHHHHHCCeEEeCCChHH-------hhCCCCHHHHHHHH
Confidence            6999999998854 4566899999998   89999999999999999999999999864       45889999999877


Q ss_pred             ccC
Q psy7735          80 VPN   82 (120)
Q Consensus        80 ~~~   82 (120)
                      ...
T Consensus       170 v~~  172 (189)
T 2ejb_A          170 VGK  172 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1

Probab=99.52  E-value=7.7e-15  Score=111.12  Aligned_cols=54  Identities=17%  Similarity=0.238  Sum_probs=48.0

Q ss_pred             CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCC
Q psy7735           1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSK   57 (120)
Q Consensus         1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g   57 (120)
                      +||||||+++++ .++..++|++++|+   .||.||++|+|+++|+++|++|++|..|
T Consensus        96 ~GiaDnLlt~aa~v~L~~~~plvl~Pa---~m~~~~~~~~N~~~L~~~G~~ivpp~~g  150 (197)
T 1sbz_A           96 AGYADGLVGRAADVVLKEGRKLVLVPR---EMPLSTIHLENMLALSRMGVAMVPPMPA  150 (197)
T ss_dssp             HTCCCSHHHHHHHHHHHHTCEEEEEEC---CSSBCHHHHHHHHHHHTTTCEECCCCCC
T ss_pred             ccccccHHHHHHHHHHhcCCCEEEEEC---CCCCCHHHHHHHHHHHHCCCEEECCCCc
Confidence            699999999874 34445899999999   8999999999999999999999999973

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=99.39  E-value=1.1e-13  Score=107.16  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=31.2

Q ss_pred             CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      .++|+|+|+|||||||||+ ||+||++||++++.+
T Consensus         8 VTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~   42 (232)
T 2gk4_A            8 VTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSA   42 (232)
T ss_dssp             EECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHT
T ss_pred             EeCCCcccccCceeeccCCCCCHHHHHHHHHHHHC
Confidence            4689999999999999999 699999999999864

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.30  E-value=6.3e-13  Score=102.39  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=30.9

Q ss_pred             CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      .++|+|+|+|||||||||+ ||+||++||++++.+
T Consensus        13 VTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~   47 (226)
T 1u7z_A           13 ITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR   47 (226)
T ss_dssp             EEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT
T ss_pred             EECCCCCcccCceeeccCCCccHHHHHHHHHHHHC
Confidence            4689999999999999999 599999999998764

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=99.27  E-value=1.1e-12  Score=105.24  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             cCCCCccCC--CcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          83 TIRKSTEPQ--DPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        83 ~~~~t~E~i--D~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      ++|||+|+|  ||||||||+ |||||++||++++.+
T Consensus        43 TaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~   78 (313)
T 1p9o_A           43 TSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAA   78 (313)
T ss_dssp             EESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHT
T ss_pred             eCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHC
Confidence            579999999  799999999 699999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	120
d1qzua_	181	c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar	8e-25
d1mvla_	182	c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar	2e-19
d1p3y1_	183	c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [Ta	1e-11
d1g5qa_	174	c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl	3e-08
d1sbza_	186	c.34.1.1 (A:) Probable aromatic acid decarboxylase	4e-07

>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 8e-25
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 1   MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLM 60
            G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT   ++ LK++GY EIPCV+K L+
Sbjct: 100 SGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLV 159

Query: 61  CGDTGLGAMAEVDTI 75
           CGD GLGAMAEV TI
Sbjct: 160 CGDEGLGAMAEVGTI 174

>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 182

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 76.7 bits (188), Expect = 2e-19
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 1   MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLM 60
            GLCDNLLTCI+RAWD++KP+   PAMNT MWN+P T+ H+ +L   G   IP + K L 
Sbjct: 97  GGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLA 156

Query: 61  CGDTGLGAMAEVDTI 75
            GD G GAMAE   I
Sbjct: 157 SGDYGNGAMAEPSLI 171

>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: MrsD
species: Bacillus sp. hil-y85/54728 [TaxId: 69002]

 Score = 56.7 bits (136), Expect = 1e-11
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 1   MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV---SK 57
            G+  NL+   + A       +F P MN  MWN  +   +I  L+  G+  I  V   + 
Sbjct: 98  NGVAMNLVATTVLAHP--HNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAF 155

Query: 58  TLMCGDTGLG-AMAEVDTI 75
            +  G       +   D  
Sbjct: 156 EIATGTRKPNRGLITPDKA 174

>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD
species: Staphylococcus epidermidis [TaxId: 1282]

 Score = 47.0 bits (111), Expect = 3e-08
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 8/72 (11%)

Query: 10  CILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLG-- 67
                    + +   P MN +MW +P  + +I+ LK+   +            +   G  
Sbjct: 99  LTTVCLTGYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMN--KSFEISSGRY 156

Query: 68  ----AMAEVDTI 75
                M  ++ +
Sbjct: 157 KNNITMPNIENV 168

>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Probable aromatic acid decarboxylase Pad1
species: Escherichia coli O157:H7 [TaxId: 83334]

 Score = 44.2 bits (104), Expect = 4e-07
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 2   GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVS 56
           G  D L+     A    K       +  +M    I   ++  L   G   +P + 
Sbjct: 97  GYADGLVGRA--ADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMP 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d1qzua_	181	4'-phosphopantothenoylcysteine decarboxylase (PPC	99.97
d1mvla_	182	4'-phosphopantothenoylcysteine decarboxylase (PPC	99.97
d1p3y1_	183	MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}	99.94
d1g5qa_	174	Epidermin modifying enzyme (peptidyl-cysteine deca	99.93
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	99.52
d1sbza_	186	Probable aromatic acid decarboxylase Pad1 {Escheri	99.48
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	99.37

>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-33  Score=207.72  Aligned_cols=81  Identities=65%  Similarity=1.243  Sum_probs=60.3

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|+|||+++++++||+.+|||+++||||+.||+||+||+|+++|+++|++||+|.+|.||||++|+||||+|++|++.|.
T Consensus       100 ~GiaD~lls~~lla~~~~kPv~iaPaMn~~Mw~np~tq~nl~~Lk~~G~~vi~P~~g~lacg~~G~Grm~e~~~I~~~i~  179 (181)
T d1qzua_         100 SGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVK  179 (181)
T ss_dssp             TTCCCSHHHHHHHTCCTTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC------------------CCHHHHHHC
T ss_pred             ccCcCHHHHHHHHhccCCCCEEEEECccHHHHhhHHHHHHHHHHHHCCcEEeCCCCccccCCCcccCCCCCHHHHHHHHH
Confidence            69999999999999988899999999999999999999999999999999999999999999999999999999999886


Q ss_pred             c
Q psy7735          81 P   81 (120)
Q Consensus        81 ~   81 (120)
                      +
T Consensus       180 ~  180 (181)
T d1qzua_         180 E  180 (181)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=8.2e-33  Score=206.13  Aligned_cols=81  Identities=52%  Similarity=0.887  Sum_probs=68.9

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV   80 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~   80 (120)
                      +|||||+++++++|++.++||+++|+||+.||+||+||+|+++|+++|++||+|.+|.||||++|+||||+|++|+++|.
T Consensus        97 ~GiaD~llt~~~la~~~~kPv~iaPaMn~~Mw~~p~t~~Nl~~L~~~G~~vi~P~~G~lacg~~G~Gr~~ep~~I~~~i~  176 (182)
T d1mvla_          97 GGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEPSLIYSTVR  176 (182)
T ss_dssp             HTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC---------CCBCCCHHHHHHHHH
T ss_pred             cCCcchhhHHHHHhccCCCCEEEEecccHHHHhhHHHHHHHHHHhccCCEEECCCcceecCCCccccCCCCHHHHHHHHH
Confidence            59999999999999987899999999999999999999999999999999999999999999999999999999999885


Q ss_pred             c
Q psy7735          81 P   81 (120)
Q Consensus        81 ~   81 (120)
                      .
T Consensus       177 ~  177 (182)
T d1mvla_         177 L  177 (182)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: MrsD
species: Bacillus sp. hil-y85/54728 [TaxId: 69002]

Probab=99.94  E-value=5e-28  Score=180.14  Aligned_cols=81  Identities=22%  Similarity=0.308  Sum_probs=65.0

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCC---CCccccCCCCCCC-CCChhhHH
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV---SKTLMCGDTGLGA-MAEVDTIK   76 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~---~g~lacg~~G~g~-m~~~~~I~   76 (120)
                      +|||||+++++++++  ++|++++||||+.||+||+||+|+++|+++|+.|++|.   .|.++||+.|.|+ |++|++|+
T Consensus        98 ~GiaDnL~t~~~la~--~~pvviaPaMn~~M~~np~~~~ni~~L~~~G~~vi~P~~~~~g~la~g~~~~g~~~~~p~~i~  175 (183)
T d1p3y1_          98 NGVAMNLVATTVLAH--PHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAFEIATGTRKPNRGLITPDKAL  175 (183)
T ss_dssp             TTCCSSHHHHHHHHS--SSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBCCC------------CBCCCHHHHH
T ss_pred             hhhccchhhHHHhhc--cCceEEEEccchHHHhhhhhHHHHHHHHHCCCEEeCCCCCCccccccCCcCCCCCCCCHHHHH
Confidence            699999999999998  79999999999999999999999999999999999997   5789999999998 99999999


Q ss_pred             hccccCc
Q psy7735          77 YGFVPNT   83 (120)
Q Consensus        77 ~~v~~~~   83 (120)
                      +.+.+.|
T Consensus       176 ~~i~~~~  182 (183)
T d1p3y1_         176 LAIEKGF  182 (183)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9887643

>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.93  E-value=4.4e-27  Score=173.80  Aligned_cols=76  Identities=24%  Similarity=0.424  Sum_probs=68.4

Q ss_pred             CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCC------CCCChhh
Q psy7735           1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLG------AMAEVDT   74 (120)
Q Consensus         1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g------~m~~~~~   74 (120)
                      +|||||+++++++++  ++|++++||||+.||+||+||+|+++|+++|++||+|.+|.  |++.|.|      +||+||+
T Consensus        92 ~GiaDnllt~~~la~--~~piiiaPaMn~~Mw~~p~~~~nl~~L~~~G~~vi~P~~g~--~~~~~~G~~~~~~~~~~~e~  167 (174)
T d1g5qa_          92 NGICDNLLTTVCLTG--YQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNK--SFEISSGRYKNNITMPNIEN  167 (174)
T ss_dssp             TTCCCSHHHHHHHHT--GGGEEEEECSCHHHHTCHHHHHHHHHHHTTTCEECCCEEEE--EEETTTTEEEEEEECCCHHH
T ss_pred             Hhhcccchhheeecc--cccEEEEecccHHHHhhhhHHHHHHHHHHCCCEEECCCCCC--cccccccCCCCCCcCCCHHH
Confidence            799999999999998  79999999999999999999999999999999999999885  4444444      6999999


Q ss_pred             HHhccc
Q psy7735          75 IKYGFV   80 (120)
Q Consensus        75 I~~~v~   80 (120)
                      |+++|.
T Consensus       168 I~~~v~  173 (174)
T d1g5qa_         168 VLNFVL  173 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999874

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.4e-15  Score=114.58  Aligned_cols=33  Identities=18%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735          83 TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        83 ~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      ++|||+|+|||||||||+ |||||++||++|+.+
T Consensus        12 TaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~   45 (223)
T d1u7za_          12 TAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR   45 (223)
T ss_dssp             EESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT
T ss_pred             ECCCCcccCCCcceeccCCcHHHHHHHHHHHHHc
Confidence            589999999999999999 799999999999875

>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Probable aromatic acid decarboxylase Pad1
species: Escherichia coli O157:H7 [TaxId: 83334]

Probab=99.48  E-value=3.8e-15  Score=109.40  Aligned_cols=70  Identities=17%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             CCCcchHHHHHHHhc-cCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735           1 MGLCDNLLTCILRAW-DFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF   79 (120)
Q Consensus         1 ~GiaDnllt~~~~a~-~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v   79 (120)
                      +||||||+++++.+. +.++|++++   +..||.||++|+|+++|+++|++|++|..|.       .+++.+.+++++.+
T Consensus        96 ~GiaDnLlt~~a~~~~k~~~~lv~~---p~em~~~~~~~~N~~~L~~~G~~i~pp~~g~-------y~~p~~~~dl~~~~  165 (186)
T d1sbza_          96 AGYADGLVGRAADVVLKEGRKLVLV---PREMPLSTIHLENMLALSRMGVAMVPPMPAF-------YNHPETVDDIVHHV  165 (186)
T ss_dssp             HTCCCSHHHHHHHHHHHHTCEEEEE---ECCSSBCHHHHHHHHHHHTTTCEECCCCCCC-------TTCCCBHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHhccccceeEEe---ecCCccCHHHHHHHHHHHHCCcEEeCCChhh-------hcCCCCHHHHHHHH
Confidence            699999999885444 334555554   4799999999999999999999999998753       45677889988876


Q ss_pred             c
Q psy7735          80 V   80 (120)
Q Consensus        80 ~   80 (120)
                      .
T Consensus       166 v  166 (186)
T d1sbza_         166 V  166 (186)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.5e-14  Score=109.14  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             cCCCCccCCC--cceeeecC-CcHHHHHHHHHHHHH
Q psy7735          83 TIRKSTEPQD--PNNFVDNN-AGITEYSLTGFLYFS  115 (120)
Q Consensus        83 ~~~~t~E~iD--~vR~isN~-SG~mg~~ia~~~~~~  115 (120)
                      ++|||+|+||  |||||||+ |||||++||++++.+
T Consensus        24 TaG~T~epID~~pVR~ItN~SSGk~G~alA~~~~~~   59 (290)
T d1p9oa_          24 TSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAA   59 (290)
T ss_dssp             EESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHT
T ss_pred             ccCCcCcccCCCCceEeCCCCchHHHHHHHHHHHHc
Confidence            5899999999  99999999 799999999999864