Psyllid ID: psy7780
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
No hits with e-value below 0.001 by BLAST
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | ||||||
| FB|FBgn0015282 | 439 | Rpt2 "Regulatory particle trip | 0.444 | 0.321 | 0.852 | 8.1e-104 | |
| POMBASE|SPBC4.07c | 448 | rpt2 "19S proteasome regulator | 0.369 | 0.261 | 0.703 | 9.1e-103 | |
| UNIPROTKB|F1NSP7 | 439 | PSMC1 "26S protease regulatory | 0.444 | 0.321 | 0.809 | 2.4e-100 | |
| UNIPROTKB|F1NTZ4 | 438 | PSMC1 "26S protease regulatory | 0.444 | 0.321 | 0.809 | 2.4e-100 | |
| ZFIN|ZDB-GENE-040625-69 | 440 | psmc1b "proteasome (prosome, m | 0.444 | 0.320 | 0.802 | 3.9e-100 | |
| UNIPROTKB|A4FUZ3 | 440 | PSMC1 "Proteasome (Prosome, ma | 0.444 | 0.320 | 0.802 | 4.9e-100 | |
| UNIPROTKB|F1PQ40 | 440 | PSMC1 "Uncharacterized protein | 0.444 | 0.320 | 0.802 | 4.9e-100 | |
| UNIPROTKB|B4DR63 | 367 | PSMC1 "cDNA FLJ58247, highly s | 0.444 | 0.384 | 0.802 | 4.9e-100 | |
| UNIPROTKB|P62191 | 440 | PSMC1 "26S protease regulatory | 0.444 | 0.320 | 0.802 | 4.9e-100 | |
| UNIPROTKB|F2Z5J1 | 440 | PSMC1 "Uncharacterized protein | 0.444 | 0.320 | 0.802 | 4.9e-100 |
| FB|FBgn0015282 Rpt2 "Regulatory particle triple-A ATPase 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 8.1e-104, Sum P(3) = 8.1e-104
Identities = 121/142 (85%), Positives = 126/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 299 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 357
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTKRRIF IHTSRMTLAEDVNL ELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 358 KTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 417
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKESVLYRKKEGTPEGLYL
Sbjct: 418 FKKSKESVLYRKKEGTPEGLYL 439
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| POMBASE|SPBC4.07c rpt2 "19S proteasome regulatory subunit Rpt2" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 9.1e-103, Sum P(3) = 9.1e-103
Identities = 83/118 (70%), Positives = 97/118 (82%)
Query: 201 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQEL 260
D+KVIMATNRI LDPALIRPGRIDRKI F PDE TKR+IF IHTS+M L EDVNL+EL
Sbjct: 331 DIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEEL 390
Query: 261 IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEG-LYL 317
I KDDLSGA+IKAI +EAGL+ALRERRM+V +DF++++E VL K EG P G LY+
Sbjct: 391 IQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGGPAGGLYI 448
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| UNIPROTKB|F1NSP7 PSMC1 "26S protease regulatory subunit 4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 115/142 (80%), Positives = 125/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 299 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 357
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTK+RIF IHTSRMTLA+DV L ELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 358 KTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 417
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 418 FKKSKENVLYKKQEGTPEGLYL 439
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| UNIPROTKB|F1NTZ4 PSMC1 "26S protease regulatory subunit 4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 115/142 (80%), Positives = 125/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 298 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 356
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTK+RIF IHTSRMTLA+DV L ELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 357 KTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 416
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 417 FKKSKENVLYKKQEGTPEGLYL 438
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| ZFIN|ZDB-GENE-040625-69 psmc1b "proteasome (prosome, macropain) 26S subunit, ATPase, 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 3.9e-100, Sum P(3) = 3.9e-100
Identities = 114/142 (80%), Positives = 126/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 300 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTKRRIF IHTSRMT+AEDV+L +LI+AKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 359 KTKRRIFQIHTSRMTVAEDVSLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 419 FKKSKENVLYKKQEGTPEGLYL 440
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| UNIPROTKB|A4FUZ3 PSMC1 "Proteasome (Prosome, macropain) 26S subunit, ATPase, 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 4.9e-100, Sum P(3) = 4.9e-100
Identities = 114/142 (80%), Positives = 125/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 300 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTK+RIF IHTSRMTLA+DV L +LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 359 KTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 419 FKKSKENVLYKKQEGTPEGLYL 440
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| UNIPROTKB|F1PQ40 PSMC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 4.9e-100, Sum P(3) = 4.9e-100
Identities = 114/142 (80%), Positives = 125/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 300 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTK+RIF IHTSRMTLA+DV L +LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 359 KTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 419 FKKSKENVLYKKQEGTPEGLYL 440
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| UNIPROTKB|B4DR63 PSMC1 "cDNA FLJ58247, highly similar to 26S protease regulatory subunit 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 4.9e-100, Sum P(3) = 4.9e-100
Identities = 114/142 (80%), Positives = 125/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 227 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 285
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTK+RIF IHTSRMTLA+DV L +LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 286 KTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 345
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 346 FKKSKENVLYKKQEGTPEGLYL 367
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| UNIPROTKB|P62191 PSMC1 "26S protease regulatory subunit 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 4.9e-100, Sum P(3) = 4.9e-100
Identities = 114/142 (80%), Positives = 125/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 300 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTK+RIF IHTSRMTLA+DV L +LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 359 KTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 419 FKKSKENVLYKKQEGTPEGLYL 440
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| UNIPROTKB|F2Z5J1 PSMC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 4.9e-100, Sum P(3) = 4.9e-100
Identities = 114/142 (80%), Positives = 125/142 (88%)
Query: 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235
G + +Q R + E+ + L GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE
Sbjct: 300 GGEREIQ-RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358
Query: 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295
KTK+RIF IHTSRMTLA+DV L +LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED
Sbjct: 359 KTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
Query: 296 FKKSKESVLYRKKEGTPEGLYL 317
FKKSKE+VLY+K+EGTPEGLYL
Sbjct: 419 FKKSKENVLYKKQEGTPEGLYL 440
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 317 | |||
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 0.0 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 1e-144 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 1e-112 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 1e-104 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 7e-99 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 1e-50 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 3e-49 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 2e-44 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 6e-40 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 1e-38 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 2e-38 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 7e-38 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 7e-35 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 1e-29 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 1e-25 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 3e-17 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 1e-12 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 2e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-06 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 518 bits (1337), Expect = 0.0
Identities = 237/353 (67%), Positives = 267/353 (75%), Gaps = 55/353 (15%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+SVGTLEEIID+NHAIVS+SVG E+YV+ILSFVDK+QLEPGCSVLL++K H+VVG+L D+
Sbjct: 105 LSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDE 164
Query: 61 TDPMVTA--VANQTSATFLRVVGSE-LIQKYL---------------------------- 89
DP+V+ V ++ + G E IQ+
Sbjct: 165 VDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYG 224
Query: 90 --GDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE 144
G G L AVAN+TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE+APSIVFIDE
Sbjct: 225 PPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDE 284
Query: 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204
IDA+GTKRYD+ SGGE+EIQRTMLELLNQLDGFDSR GDVKV
Sbjct: 285 IDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-------------------GDVKV 325
Query: 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 264
IMATNRIE+LDPALIRPGRIDRKIEFP PDEKTKRRIF IHTS+MTLAEDV+L+E IMAK
Sbjct: 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAK 385
Query: 265 DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
D+LSGADIKAICTEAGL+ALRERRMKVT DF+K+KE VLYRKK PEGLYL
Sbjct: 386 DELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGNIPEGLYL 438
|
Length = 438 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 413 bits (1063), Expect = e-144
Identities = 174/353 (49%), Positives = 223/353 (63%), Gaps = 55/353 (15%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+ VGT+ E++DD AIV +S G + V+ILSFVD+D LEPG V LN +++V VL +
Sbjct: 73 LIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPE 132
Query: 61 TDPMVTA--VANQTSATF------------------LRVVGSELIQKYLGDGPK------ 94
DP V+ V + T+ L + EL ++ D PK
Sbjct: 133 VDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYG 192
Query: 95 ----------LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE 144
AVANQT ATF+RVVGSEL+QKY+G+G +LVRELF +A E APSI+FIDE
Sbjct: 193 PPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDE 252
Query: 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204
IDA+G KR+DS + G+RE+QRTMLELLNQLDGFD R G+VKV
Sbjct: 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR-------------------GNVKV 293
Query: 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 264
IMATNR + LDPAL+RPGR DRKIEFPLPDE+ + I IHT +M LA+DV+L+ L
Sbjct: 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLT 353
Query: 265 DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
+ SGAD+KAICTEAG+ A+RERR +VT EDF K+ E V+ +KK+ + YL
Sbjct: 354 EGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKKKLSSTARYL 406
|
Length = 406 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 331 bits (851), Expect = e-112
Identities = 150/347 (43%), Positives = 214/347 (61%), Gaps = 55/347 (15%)
Query: 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTD 62
V T+ E++DD +V +S G + V++ F+D+++L+PG V LN + A+V VL + D
Sbjct: 55 VATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKD 114
Query: 63 PMVTA--VANQTSATF------------LR-VVGSELIQKYL------------------ 89
P V A V + T+ +R V L + L
Sbjct: 115 PRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPP 174
Query: 90 GDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
G G L AVA++T+ATF+RVVGSEL+QK++G+G +LVRELF +A E APSI+FIDEID
Sbjct: 175 GTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEID 234
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
A+ KR DS + G+RE+QRT+++LL ++DGFD R G+VK+I
Sbjct: 235 AIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-------------------GNVKIIA 275
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNRI+ LDPA++RPGR DR IE PLPDE+ + I IHT +M LA+DV+L+EL +
Sbjct: 276 ATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEG 335
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE 313
SGAD+KAICTEAG+ A+R+ R +VT EDF K+ E V+ ++++ + E
Sbjct: 336 ASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKDSME 382
|
Length = 389 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = e-104
Identities = 145/345 (42%), Positives = 211/345 (61%), Gaps = 56/345 (16%)
Query: 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTD 62
+G E+ID N+ IVS++ GS +YV ILS ++++ L+P SV L+ HAVV +L + D
Sbjct: 69 IGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEAD 128
Query: 63 PMVTAVANQT--------------------SATFLRVVGSELIQKYLGDGPK-------- 94
+ + A L + EL ++ D P+
Sbjct: 129 SSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPP 188
Query: 95 --------LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
AVA+ T+ATF+RVVGSE +QKYLG+GP++VR++FR+A E+APSI+FIDE+D
Sbjct: 189 GTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 248
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
++ TKR+D+ +G +RE+QR +LELLNQ+DGFD +VKVIM
Sbjct: 249 SIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-------------------NVKVIM 289
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF TS+M L+E+V+L++ + +
Sbjct: 290 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEK 349
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGT 311
+S ADI AIC EAG+ A+R+ R + +DF+K ++V+ RK +
Sbjct: 350 ISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVV-RKTDRD 393
|
Length = 398 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 295 bits (756), Expect = 7e-99
Identities = 146/338 (43%), Positives = 204/338 (60%), Gaps = 55/338 (16%)
Query: 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTD 62
VGT+ E++DDN +V +S G V++ +F+D+ L+PG V LN + +V VL D
Sbjct: 46 VGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKD 105
Query: 63 PMVTA--VANQTSATFLRVVG------------------SELIQKYLGDGPK-------- 94
P+V V + + ++ + G EL ++ + PK
Sbjct: 106 PLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPP 165
Query: 95 --------LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
AVA++T+ATF+RVVGSEL++KY+G+G +LVRE+F +A+E APSI+FIDEID
Sbjct: 166 GTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEID 225
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
A+ KR DS + G+RE+QRT+++LL +LDGFD R G+VKVI
Sbjct: 226 AIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-------------------GNVKVIA 266
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNR + LDPAL+RPGR DR IE PLPD + + I IHT +M LAEDV+L+ + +
Sbjct: 267 ATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEG 326
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
SGAD+KAICTEAG+ A+RE R VT +DF K+ E VL
Sbjct: 327 ASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKVL 364
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 1e-50
Identities = 96/221 (43%), Positives = 126/221 (57%), Gaps = 29/221 (13%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA ++ + F+ V GSEL+ K++G+ K +RELF A + APSI+FIDEID++ + R S
Sbjct: 295 AVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS 354
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
G R R + +LL +LDG + V VI ATNR + LD
Sbjct: 355 EDGSGR---RVVGQLLTELDGIEKA-------------------EGVLVIAATNRPDDLD 392
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--TLAEDVNLQELIMAKDDLSGADIK 273
PAL+RPGR DR I PLPD + + IF IH LAEDV+L+EL + SGADI
Sbjct: 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA 452
Query: 274 AICTEAGLMALRERRM-KVTNEDF----KKSKESVLYRKKE 309
A+ EA L ALRE R +VT +DF KK K SV Y + +
Sbjct: 453 ALVREAALEALREARRREVTLDDFLDALKKIKPSVTYEEWK 493
|
Length = 494 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 3e-49
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F + GS+ ++ ++G G VR+LF A+++AP I+FIDEIDAVG +R
Sbjct: 107 AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 166
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF + V VI ATNR + LD
Sbjct: 167 LGGGNDEREQTLNQLLVEMDGFGTNTG-------------------VIVIAATNRPDVLD 207
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD K + I +H LA DV+L+ + SGAD+ +
Sbjct: 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLY 305
EA L+A R+ + ++T D +++ + V+
Sbjct: 268 LNEAALLAARKNKTEITMNDIEEAIDRVIA 297
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 84/213 (39%), Positives = 117/213 (54%), Gaps = 21/213 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA ++ A F+ V G E++ K++G+ K +RE+FR A + AP+I+F DEIDA+ R
Sbjct: 506 AVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPAR--G 563
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
R + +LL ++DG +V VI ATNR + LD
Sbjct: 564 ARFDTSVTDRIVNQLLTEMDGIQE-------------------LSNVVVIAATNRPDILD 604
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR I P PDE+ ++ IF IHT M LAEDV+L+EL + +GADI+A+
Sbjct: 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAV 664
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308
C EA + ALRE E + +E L K
Sbjct: 665 CREAAMAALRESIGSPAKEKLEVGEEEFLKDLK 697
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 6e-40
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 19/210 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F + GS+ ++ ++G G VR+LF A+++AP I+FIDEIDAVG +R
Sbjct: 202 AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 261
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF V VI ATNR + LD
Sbjct: 262 LGGGNDEREQTLNQLLVEMDGFGGN-------------------EGVIVIAATNRPDVLD 302
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I LPD K + +I +H LAEDV+L+++ SGAD+ +
Sbjct: 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANL 362
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLY 305
EA L+A R + ++T D +++ + V+
Sbjct: 363 LNEAALLAARRNKKEITMRDIEEAIDRVIA 392
|
Length = 596 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 34/256 (13%)
Query: 71 QTSATFLR------VVGSELIQKYL-----GDGPKL---AVANQTSATFLRVVGSELIQK 116
+ +FL+ VG+++ + L G G L A+A + F + GSE ++
Sbjct: 196 EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255
Query: 117 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG 176
++G G VR+LF+ A+E++P IVFIDEIDAVG +R GG E ++T+ +LL ++DG
Sbjct: 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315
Query: 177 FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236
F V VI ATNR++ LD AL+RPGR DR+I LPD +
Sbjct: 316 FKGNK-------------------GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356
Query: 237 TKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDF 296
+ I +H L+ DV+L+ + SGAD+ + EA ++ R ++ +T ++
Sbjct: 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416
Query: 297 KKSKESVLYRKKEGTP 312
+ + V+ EGTP
Sbjct: 417 DTAIDRVI-AGLEGTP 431
|
Length = 638 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 2e-38
Identities = 87/227 (38%), Positives = 124/227 (54%), Gaps = 41/227 (18%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVAN+ A F+ + G E++ KY G+ + +RE+F+ AEE+APSI+FIDEIDA+ KR +
Sbjct: 231 AVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV 290
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GE E +R + +LL +DG R G V VI ATNR + LD
Sbjct: 291 T--GEVE-KRVVAQLLTLMDGLKGR-------------------GRVIVIGATNRPDALD 328
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL RPGR DR+I +PD++ ++ I +HT M LAEDV+L +L GAD+ A+
Sbjct: 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAAL 388
Query: 276 CTEAGLMALRE-------------------RRMKVTNEDFKKSKESV 303
EA + ALR + +KVT +DF ++ + V
Sbjct: 389 AKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMV 435
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 7e-38
Identities = 62/137 (45%), Positives = 82/137 (59%), Gaps = 22/137 (16%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + A F+ + GSEL+ KY+G+ K +RELF A++ AP ++FIDEIDA+ R
Sbjct: 17 AVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSR--- 73
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
SGG+ E +R + +LL +LDGF S + V VI ATNR + LD
Sbjct: 74 GSGGDSESRRVVNQLLTELDGFTSSLSK------------------VIVIAATNRPDKLD 115
Query: 216 PALIRPGRIDRKIEFPL 232
PAL+R GR DR IEFPL
Sbjct: 116 PALLR-GRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 7e-35
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 19/209 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+A + F + GS+ ++ ++G G VR++F A++ AP I+FIDEIDAVG +R
Sbjct: 204 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 263
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ ++L ++DGF+ + VI ATNR + LD
Sbjct: 264 LGGGHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLD 304
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD + + +I +H R+ LA D++ + SGAD+ +
Sbjct: 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVL 304
EA L A R + V+ +F+K+K+ ++
Sbjct: 365 VNEAALFAARGNKRVVSMVEFEKAKDKIM 393
|
Length = 644 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 76/224 (33%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG-TKRYD 154
A+AN+ L V +ELI +++GDG + + EL+ A + AP IVFIDE+DA+ +RY
Sbjct: 170 ALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ 229
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
G EI LL +LDG V I ATNR E L
Sbjct: 230 ELRGDVSEIVNA---LLTELDGIKEN-------------------EGVVTIAATNRPELL 267
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 274
DPA IR R + +IEF LP+++ + I + + L D +L+ L +SG DIK
Sbjct: 268 DPA-IR-SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKE 325
Query: 275 ICTEAGLM-ALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
+ L A+ E R KV ED +K+ + R+ P+ LY+
Sbjct: 326 KVLKTALHRAIAEDREKVEREDIEKALKKERKRRAP-RPKHLYV 368
|
Length = 368 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 79/211 (37%), Positives = 104/211 (49%), Gaps = 29/211 (13%)
Query: 100 QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159
A FL + G E++ KY+G+ +RELF AE+ APSI+FIDEIDA+ KR
Sbjct: 40 NEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEV 99
Query: 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALI 219
ER + +L L++ L G V VI ATNR + LDPA
Sbjct: 100 ERRVVAQLLALMDGLKR-----------------------GQVIVIGATNRPDGLDPAKR 136
Query: 220 RPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEA 279
RPGR DR+IE LPDE + I IHT M L + L SGAD+ A+ EA
Sbjct: 137 RPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEA 196
Query: 280 GLMALRERR------MKVTNEDFKKSKESVL 304
L LR + VT +DF+++ + VL
Sbjct: 197 ALRELRRAIDLVGEYIGVTEDDFEEALKKVL 227
|
Length = 494 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 3e-17
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 32/179 (17%)
Query: 102 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYDSNS 157
+ FL + G EL+ KY+G+ + +R +F+ A E A P IVF DE+D++ R S
Sbjct: 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFDEMDSLFRTR---GS 307
Query: 158 GGEREIQRTML-ELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216
G +++ T++ +LL ++DG +S +V VI A+NR + +DP
Sbjct: 308 GVSSDVETTVVPQLLAEIDGVESL-------------------DNVIVIGASNREDMIDP 348
Query: 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
A++RPGR+D KI PD + IF + L +D+ L E + A D A A+
Sbjct: 349 AILRPGRLDVKIRIERPDAEAAADIFAKY-----LTDDLPLPEDLAAHDGDREATAAAL 402
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+AN LR+ +L +G+ +R++ R+AE +P I++IDEID + +S
Sbjct: 278 AIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS---NS 334
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
S G DS NR L+ + L+ P V V+ N I+ L
Sbjct: 335 ESKG------------------DSGTTNRVLATFITWLSEKKSP--VFVVATANNIDLLP 374
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIMAKDDLSGADIK 273
++R GR D LP + + +IF IH R + ++++L + SGA+I+
Sbjct: 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE 434
Query: 274 AICTEAGLMALRERRMKVTNEDFKKS 299
EA +A E+R + T +D +
Sbjct: 435 QSIIEAMYIAFYEKR-EFTTDDILLA 459
|
Length = 489 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 35/143 (24%)
Query: 96 AVANQT---SATFLRVVGSELIQKYLG---DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149
A+AN+ A FL + S+L++ + G LVR LF +AE+ P ++FIDEID++
Sbjct: 38 AIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97
Query: 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209
R Q +L +L L L +V+VI ATN
Sbjct: 98 -----------RGAQNALLRVLETL------------------NDLRIDRENVRVIGATN 128
Query: 210 RIETLDPALIRPGRIDRKIEFPL 232
R D R+D +I PL
Sbjct: 129 RPLLGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 32/156 (20%)
Query: 83 ELIQKYLGDGPKLAVAN----QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPS 138
L ++ G + + ++ +K G G +R +A + P
Sbjct: 21 ALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
Query: 139 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198
++ +DEI ++ + L E L L+
Sbjct: 81 VLILDEITSLLDAEQE---------------------------ALLLLLEELRLLLLLKS 113
Query: 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 234
++ VI+ TN + L PAL+R R DR+I L
Sbjct: 114 EKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0726|consensus | 440 | 100.0 | ||
| KOG0727|consensus | 408 | 100.0 | ||
| KOG0728|consensus | 404 | 100.0 | ||
| KOG0652|consensus | 424 | 100.0 | ||
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0729|consensus | 435 | 100.0 | ||
| KOG0651|consensus | 388 | 100.0 | ||
| KOG0730|consensus | 693 | 100.0 | ||
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| KOG0733|consensus | 802 | 100.0 | ||
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 100.0 | |
| KOG0734|consensus | 752 | 100.0 | ||
| KOG0736|consensus | 953 | 100.0 | ||
| KOG0738|consensus | 491 | 100.0 | ||
| KOG0731|consensus | 774 | 100.0 | ||
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| KOG0733|consensus | 802 | 100.0 | ||
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 100.0 | |
| KOG0735|consensus | 952 | 100.0 | ||
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| KOG0739|consensus | 439 | 100.0 | ||
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| KOG0737|consensus | 386 | 100.0 | ||
| CHL00176 | 638 | ftsH cell division protein; Validated | 100.0 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 100.0 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 100.0 | |
| KOG0741|consensus | 744 | 100.0 | ||
| KOG0740|consensus | 428 | 100.0 | ||
| KOG0730|consensus | 693 | 100.0 | ||
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 100.0 | |
| KOG0732|consensus | 1080 | 100.0 | ||
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.98 | |
| KOG0743|consensus | 457 | 99.93 | ||
| KOG0736|consensus | 953 | 99.9 | ||
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.9 | |
| KOG0744|consensus | 423 | 99.88 | ||
| KOG0742|consensus | 630 | 99.88 | ||
| KOG0735|consensus | 952 | 99.86 | ||
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.82 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.8 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.79 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.78 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.77 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.76 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.76 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.76 | |
| KOG2004|consensus | 906 | 99.75 | ||
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.74 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.73 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.71 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.7 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.7 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.68 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.67 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.63 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.62 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.61 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.6 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.6 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.6 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.59 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.58 | |
| KOG2028|consensus | 554 | 99.57 | ||
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.56 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.53 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.53 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.53 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.52 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.52 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.51 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.51 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.51 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.49 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.48 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.48 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.48 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.46 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.46 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.45 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.45 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.45 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.43 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.43 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.43 | |
| KOG0989|consensus | 346 | 99.41 | ||
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.41 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.41 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.41 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.4 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.39 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.39 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.38 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.38 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.38 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.37 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.37 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.36 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.36 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.35 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.35 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.34 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.34 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.34 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.34 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.32 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.31 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.31 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.31 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.31 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.3 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.3 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.3 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.29 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.28 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.27 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.26 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.25 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.25 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.24 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.22 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.22 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.22 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.21 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.18 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 99.18 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.18 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.15 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.15 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.15 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 99.14 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.13 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.12 | |
| PHA02244 | 383 | ATPase-like protein | 99.11 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.11 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.1 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.1 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.05 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.03 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.03 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.02 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.01 | |
| KOG1514|consensus | 767 | 98.97 | ||
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 98.96 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 98.96 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.95 | |
| KOG0741|consensus | 744 | 98.95 | ||
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.93 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 98.92 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 98.89 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 98.88 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 98.88 | |
| KOG1969|consensus | 877 | 98.87 | ||
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 98.85 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 98.84 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 98.81 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 98.8 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 98.79 | |
| KOG0991|consensus | 333 | 98.78 | ||
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.76 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.67 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 98.66 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 98.65 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.64 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 98.63 | |
| KOG0745|consensus | 564 | 98.58 | ||
| KOG2227|consensus | 529 | 98.52 | ||
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 98.52 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 98.5 | |
| KOG2035|consensus | 351 | 98.5 | ||
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 98.47 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 98.46 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.46 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 98.44 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 98.44 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.4 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 98.39 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.39 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 98.37 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 98.37 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.37 | |
| KOG0990|consensus | 360 | 98.32 | ||
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 98.32 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.3 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.29 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.28 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.27 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 98.27 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 98.26 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.25 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.25 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.25 | |
| PRK08181 | 269 | transposase; Validated | 98.23 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 98.22 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 98.2 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.19 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 98.18 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.18 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.13 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.13 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.13 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.13 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.09 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.08 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.07 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.05 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.05 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 98.05 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.02 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.02 | |
| PRK06526 | 254 | transposase; Provisional | 98.01 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 97.99 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.99 | |
| KOG1968|consensus | 871 | 97.95 | ||
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 97.92 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.92 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 97.92 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 97.89 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 97.87 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 97.84 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 97.84 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.82 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 97.82 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 97.79 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 97.77 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 97.75 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.72 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.7 | |
| KOG1942|consensus | 456 | 97.66 | ||
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 97.65 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 97.6 | |
| KOG1051|consensus | 898 | 97.54 | ||
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 97.54 | |
| KOG1970|consensus | 634 | 97.53 | ||
| KOG2228|consensus | 408 | 97.5 | ||
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 97.45 | |
| KOG1051|consensus | 898 | 97.45 | ||
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 97.39 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 97.39 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.35 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.35 | |
| KOG2680|consensus | 454 | 97.32 | ||
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 97.31 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 97.31 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 97.29 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 97.26 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 97.23 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 97.22 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.19 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 97.19 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.19 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 97.16 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 97.15 | |
| KOG0478|consensus | 804 | 97.15 | ||
| KOG0480|consensus | 764 | 97.12 | ||
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 97.1 | |
| COG5245 | 3164 | DYN1 Dynein, heavy chain [Cytoskeleton] | 97.07 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 96.9 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 96.85 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 96.82 | |
| COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttransla | 96.81 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.78 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 96.71 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 96.64 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 96.62 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.57 | |
| KOG1942|consensus | 456 | 96.55 | ||
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 96.54 | |
| KOG2170|consensus | 344 | 96.53 | ||
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 96.52 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.51 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 96.5 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.49 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 96.48 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 96.48 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 96.45 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 96.42 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.35 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 96.31 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 96.3 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 96.25 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.24 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 96.24 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 96.18 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 96.16 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.13 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.11 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 96.1 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 96.09 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.09 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 96.09 | |
| PHA00350 | 399 | putative assembly protein | 96.09 | |
| KOG3928|consensus | 461 | 96.06 | ||
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 96.04 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 96.03 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 96.0 | |
| PF05272 | 198 | VirE: Virulence-associated protein E; InterPro: IP | 95.98 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 95.97 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 95.94 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 95.93 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 95.91 | |
| PRK13695 | 174 | putative NTPase; Provisional | 95.9 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 95.9 | |
| PHA00012 | 361 | I assembly protein | 95.88 | |
| KOG2383|consensus | 467 | 95.86 | ||
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 95.85 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 95.84 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 95.81 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 95.8 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 95.79 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 95.76 | |
| PHA02624 | 647 | large T antigen; Provisional | 95.71 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 95.66 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 95.65 | |
| PRK03839 | 180 | putative kinase; Provisional | 95.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 95.64 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 95.64 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 95.63 | |
| PRK12339 | 197 | 2-phosphoglycerate kinase; Provisional | 95.61 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 95.58 | |
| KOG2543|consensus | 438 | 95.58 | ||
| PRK06762 | 166 | hypothetical protein; Provisional | 95.56 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 95.56 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 95.52 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 95.48 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 95.47 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 95.45 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 95.38 | |
| KOG3347|consensus | 176 | 95.33 | ||
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 95.31 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 95.29 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 95.26 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 95.24 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 95.21 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 95.16 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 95.16 | |
| PF00154 | 322 | RecA: recA bacterial DNA recombination protein; In | 95.14 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 95.13 | |
| PHA02774 | 613 | E1; Provisional | 95.13 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 95.06 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 95.01 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 95.0 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 94.96 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 94.95 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 94.91 | |
| PRK13946 | 184 | shikimate kinase; Provisional | 94.91 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 94.86 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 94.83 | |
| KOG2680|consensus | 454 | 94.82 | ||
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 94.8 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 94.8 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 94.79 | |
| KOG0477|consensus | 854 | 94.76 | ||
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 94.73 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 94.72 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 94.71 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 94.67 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 94.66 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 94.66 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 94.65 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 94.63 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 94.57 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 94.5 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 94.49 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 94.45 | |
| PRK06217 | 183 | hypothetical protein; Validated | 94.44 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 94.43 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 94.42 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 94.37 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 94.35 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 94.34 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 94.25 | |
| PLN02200 | 234 | adenylate kinase family protein | 94.23 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 94.21 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.19 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 94.16 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 94.14 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 94.13 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 94.13 | |
| PF13479 | 213 | AAA_24: AAA domain | 94.12 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 94.08 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 94.08 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 94.06 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 94.03 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 94.03 | |
| PRK03731 | 171 | aroL shikimate kinase II; Reviewed | 94.02 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 94.01 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 93.99 | |
| TIGR02239 | 316 | recomb_RAD51 DNA repair protein RAD51. This eukary | 93.96 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 93.95 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 93.92 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 93.9 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 93.83 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 93.79 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 93.75 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 93.68 | |
| PRK01184 | 184 | hypothetical protein; Provisional | 93.64 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 93.62 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 93.62 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 93.61 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 93.57 | |
| PF08303 | 168 | tRNA_lig_kinase: tRNA ligase kinase domain; InterP | 93.54 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 93.51 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 93.44 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 93.44 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 93.42 | |
| PLN02674 | 244 | adenylate kinase | 93.41 | |
| PRK13764 | 602 | ATPase; Provisional | 93.39 | |
| PRK14526 | 211 | adenylate kinase; Provisional | 93.38 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 93.32 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 93.31 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 93.25 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 93.23 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 93.21 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 93.17 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 93.16 | |
| COG0468 | 279 | RecA RecA/RadA recombinase [DNA replication, recom | 93.16 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 93.14 | |
| PF06414 | 199 | Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e | 93.13 | |
| COG4128 | 398 | Zot Zonula occludens toxin [General function predi | 93.13 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 93.12 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 93.12 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 93.09 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 93.08 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 93.07 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 92.99 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 92.98 | |
| TIGR01526 | 325 | nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr | 92.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 92.95 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 92.92 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 92.81 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 92.79 | |
| PRK14529 | 223 | adenylate kinase; Provisional | 92.75 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 92.69 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 92.67 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 92.66 | |
| COG3265 | 161 | GntK Gluconate kinase [Carbohydrate transport and | 92.61 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 92.61 | |
| KOG1533|consensus | 290 | 92.58 | ||
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 92.58 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 92.49 | |
| PRK04182 | 180 | cytidylate kinase; Provisional | 92.37 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 92.36 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 92.32 | |
| PRK08154 | 309 | anaerobic benzoate catabolism transcriptional regu | 92.25 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 92.25 | |
| PRK14021 | 542 | bifunctional shikimate kinase/3-dehydroquinate syn | 92.24 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 92.2 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 92.17 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 92.16 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 92.08 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.89 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 91.86 | |
| PF07088 | 484 | GvpD: GvpD gas vesicle protein; InterPro: IPR00978 | 91.85 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 91.84 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 91.83 | |
| PRK13975 | 196 | thymidylate kinase; Provisional | 91.69 | |
| PLN02459 | 261 | probable adenylate kinase | 91.67 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 91.57 | |
| PRK08099 | 399 | bifunctional DNA-binding transcriptional repressor | 91.56 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 91.5 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 91.48 | |
| TIGR02173 | 171 | cyt_kin_arch cytidylate kinase, putative. Proteins | 91.48 | |
| KOG1802|consensus | 935 | 91.47 | ||
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 91.46 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 91.46 | |
| PF02702 | 211 | KdpD: Osmosensitive K+ channel His kinase sensor d | 91.42 | |
| PRK11545 | 163 | gntK gluconate kinase 1; Provisional | 91.4 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 91.28 | |
| TIGR02653 | 675 | Lon_rel_chp conserved hypothetical protein. This m | 91.27 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 91.13 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 91.13 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 91.01 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 90.98 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 90.98 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 90.97 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.85 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 90.78 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 90.76 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 90.73 | |
| PF01202 | 158 | SKI: Shikimate kinase; InterPro: IPR000623 Shikima | 90.72 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 90.72 | |
| KOG1803|consensus | 649 | 90.71 | ||
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 90.7 | |
| COG2074 | 299 | 2-phosphoglycerate kinase [Carbohydrate transport | 90.69 |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-81 Score=567.21 Aligned_cols=297 Identities=58% Similarity=0.901 Sum_probs=288.2
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
.+||+|.|++++++++|+++++++|++.+.++++++.|+||++|++|.+++.++++||++.|+++..|+.+ |+++|+|
T Consensus 73 l~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~d 152 (406)
T COG1222 73 LIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYED 152 (406)
T ss_pred ceEEEEEEEcCCceEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999887 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
||| ++|+|||||||||+ |+|++++++|+++.+|+|+++|+|++++.
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence 999 78999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
+|++|+.|++++||||||||||+++.+|.++++++++++|++|++||++||||+.. ++|.|
T Consensus 233 VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~-------------------~nvKV 293 (406)
T COG1222 233 VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR-------------------GNVKV 293 (406)
T ss_pred HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC-------------------CCeEE
Confidence 99999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+||||++.|||||+||||||++|+||+|+.++|.+||++|.+++.+..++||+.+|..|+|+|||||+++|.+|+|+|+
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~ 316 (317)
|+++..||++||.+|+++++...+...+...|
T Consensus 374 R~~R~~Vt~~DF~~Av~KV~~~~~~~~~~~~~ 405 (406)
T COG1222 374 RERRDEVTMEDFLKAVEKVVKKKKKLSSTARY 405 (406)
T ss_pred HhccCeecHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999887765544444
|
|
| >KOG0726|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=479.64 Aligned_cols=298 Identities=87% Similarity=1.240 Sum_probs=291.4
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
++||+++|++||++++|.++.+++|++.+.+++++++|.|||.|.+|.+..+++++|-++.|+++..|+.+ |..+|.|
T Consensus 107 msvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~d 186 (440)
T KOG0726|consen 107 MSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYAD 186 (440)
T ss_pred cccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999998877 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
||| ++++||+||||||+ |+|+...++|+++.+|+|+++|.|++++.
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpkl 266 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKL 266 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHH
Confidence 999 57899999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
+|++|+.|..++|+|+||||||+++.+|.++.+++++++++++.+||+++|||+++ ++|.|
T Consensus 267 vRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr-------------------gDvKv 327 (440)
T KOG0726|consen 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-------------------GDVKV 327 (440)
T ss_pred HHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc-------------------CCeEE
Confidence 99999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|++||+.+.|||||+||||+|++|+||.|+...++.||.+|..++.+..+++++++...-+.+|||||+++|.+|++.|+
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAl 407 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLAL 407 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
|+++..++++||.+|.++|+.+++.+.++.+|+
T Consensus 408 RerRm~vt~~DF~ka~e~V~~~K~~g~~egly~ 440 (440)
T KOG0726|consen 408 RERRMKVTMEDFKKAKEKVLYKKKEGVPEGLYL 440 (440)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcccCCcccccC
Confidence 999999999999999999999999999999985
|
|
| >KOG0727|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-66 Score=448.08 Aligned_cols=287 Identities=50% Similarity=0.875 Sum_probs=279.0
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|++.|.+|.++.||.+.+|++|++++.+.+++++++|++.|++|+.+..+++++|++.|..++.+..+ |+++|.||
T Consensus 78 vigqfle~vdqnt~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~di 157 (408)
T KOG0727|consen 78 VIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADI 157 (408)
T ss_pred HHHHHHHhhhccCceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCcccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999988766 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|+|||||||||+ |+|++..+.|+++.+|+++.+|.|++++++
T Consensus 158 ggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmv 237 (408)
T KOG0727|consen 158 GGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMV 237 (408)
T ss_pred ccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHH
Confidence 99 78999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
|++|..|++++|+||||||+|+++.+|++.+.+.++++++++.++|++||||+.. .+|.||
T Consensus 238 rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-------------------~nvkvi 298 (408)
T KOG0727|consen 238 RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-------------------TNVKVI 298 (408)
T ss_pred HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-------------------cceEEE
Confidence 9999999999999999999999999999999999999999999999999999987 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
++|||.+.|||||+||||+|++|+||+|++.+++-+|.....++.+.+++|++++..+.+..||+||.++|++|+|.|+|
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhh
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~ 307 (317)
+++..|...||+++.+.++++.
T Consensus 379 ~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 379 ENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred hcceeeeHHHHHHHHHhhcCCc
Confidence 9999999999999999988654
|
|
| >KOG0728|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=432.38 Aligned_cols=289 Identities=45% Similarity=0.764 Sum_probs=279.9
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.||+|.+.+++++++|+.+....|++.+...++-..+.|+.+|++..+++.+..+||..+|++++.|..+ |+.+|+.|
T Consensus 70 yvgev~k~m~k~kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMi 149 (404)
T KOG0728|consen 70 YVGEVVKAMGKKKVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMI 149 (404)
T ss_pred hHHHHHHhcCcceEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHh
Confidence 4799999999999999999999999999999999999999999999999999999999999999988766 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|+|||||||||+ |+|++..+.|+++++++|+++|+|++.+.+
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmv 229 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMV 229 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHH
Confidence 99 56889999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
|++|-.|++++|+|||+||||++++.|..++.++++++++++.++|+++|||+.. .++.||
T Consensus 230 relfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat-------------------knikvi 290 (404)
T KOG0728|consen 230 RELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT-------------------KNIKVI 290 (404)
T ss_pred HHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc-------------------cceEEE
Confidence 9999999999999999999999999999888899999999999999999999988 899999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
++|||.+.|||||+||||+|++|+||+|++++|.+|+++|.+++++...+++..+|+...|.||++++.+|.+|+|+|+|
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+++-.+|++||+-|+.+++++..+
T Consensus 371 errvhvtqedfemav~kvm~k~~e 394 (404)
T KOG0728|consen 371 ERRVHVTQEDFEMAVAKVMQKDSE 394 (404)
T ss_pred HhhccccHHHHHHHHHHHHhcccc
Confidence 999999999999999999977654
|
|
| >KOG0652|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=427.63 Aligned_cols=279 Identities=47% Similarity=0.774 Sum_probs=271.4
Q ss_pred CcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeechh---------
Q psy7780 13 NHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRVVG--------- 81 (317)
Q Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~g--------- 81 (317)
.++++++++.+.|++.+.+.++++.|+||+.|.+|..++-+++.||.+.|..++.|+.+ |+.+|+||||
T Consensus 105 kcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELv 184 (424)
T KOG0652|consen 105 KCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELV 184 (424)
T ss_pred eeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999887 8999999999
Q ss_pred ----------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC
Q psy7780 82 ----------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 136 (317)
Q Consensus 82 ----------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~ 136 (317)
++|+|||||||||+ |+|...+++|..+.+++|+++|+|++.+.+|+.|..|++.+
T Consensus 185 EAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEka 264 (424)
T KOG0652|consen 185 EAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 264 (424)
T ss_pred HHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccC
Confidence 68999999999999 99999999999999999999999999999999999999999
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
|+||||||+|+++.+|+++...+++++++++.++|+++|||.+. ..|.||++|||.+.|||
T Consensus 265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~-------------------~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD-------------------DRVKVIAATNRVDILDP 325 (424)
T ss_pred CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc-------------------cceEEEeecccccccCH
Confidence 99999999999999999999999999999999999999999988 89999999999999999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDF 296 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~ 296 (317)
||+|+||+|++|+||.|+++.|..|+++|.+++...++++++++|+.|++|+|++++++|-+|+|.|+|++...|+.+||
T Consensus 326 ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDf 405 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDF 405 (424)
T ss_pred HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccC
Q psy7780 297 KKSKESVLYRKKEG 310 (317)
Q Consensus 297 ~~al~~v~~~~~~~ 310 (317)
.+++-.++.++|.+
T Consensus 406 megI~eVqakKka~ 419 (424)
T KOG0652|consen 406 MEGILEVQAKKKAS 419 (424)
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999888875
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=433.13 Aligned_cols=298 Identities=78% Similarity=1.171 Sum_probs=284.5
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
+.||+|+|.+++++++|+++++++|++.+.++++++.|+||+.|.++.++..+++++|++.|+++..|..+ |..+|+|
T Consensus 105 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~D 184 (438)
T PTZ00361 105 LSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYAD 184 (438)
T ss_pred cEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999988766 8899999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
|+| .+||+||||||||+ ++|++++.+|+.+.++++.++|.|++++.
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~ 264 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKL 264 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHH
Confidence 999 36789999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++.+|..|+.++||||||||||+++.+|....++++.++++++.++|.++|++... .++.|
T Consensus 265 vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-------------------~~V~V 325 (438)
T PTZ00361 265 VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-------------------GDVKV 325 (438)
T ss_pred HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc-------------------CCeEE
Confidence 99999999999999999999999999987767777888999999999999998766 78999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+|||+++.||++++||||||++|+||.|+.++|.+||+.++.++.+..++++.+++..++||||+||+++|++|++.|+
T Consensus 326 I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
++++..|+.+||.+|+++++.+++...|+.+|+
T Consensus 406 r~~r~~Vt~~D~~~A~~~v~~~~~~~~~~~~~~ 438 (438)
T PTZ00361 406 RERRMKVTQADFRKAKEKVLYRKKGNIPEGLYL 438 (438)
T ss_pred HhcCCccCHHHHHHHHHHHHhhcccCCCccccC
Confidence 999999999999999999999999999999995
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=419.98 Aligned_cols=288 Identities=49% Similarity=0.848 Sum_probs=273.2
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
..||+++|++++++++|+++++++|++.+.+.++++.++||+.|.+|..+..+++++|.+.++.+..|... |+++|+|
T Consensus 67 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d 146 (398)
T PTZ00454 67 LVIGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSD 146 (398)
T ss_pred ceEEEEEEEEcCCEEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999998877654 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
|+| ++|||||||||||+ ++|++++.+|+.+.++++..+|.|++++.
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~ 226 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRM 226 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHH
Confidence 999 57899999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++++|..|+.++||||||||+|+++.+|.+...+.+.+.++++.++++++|++... .+++|
T Consensus 227 lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-------------------~~v~V 287 (398)
T PTZ00454 227 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT-------------------TNVKV 287 (398)
T ss_pred HHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC-------------------CCEEE
Confidence 99999999999999999999999999887666666678899999999999998776 78999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+|||+++.||||++||||||++|+||.|+.++|.+||+.++.++++..++++.+++..|+||||+||+++|++|++.|+
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~ 307 (317)
++++..|+.+||.+|+++++.+.
T Consensus 368 r~~~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 368 RKNRYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred HcCCCccCHHHHHHHHHHHHhcc
Confidence 99999999999999999998764
|
|
| >KOG0729|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=390.72 Aligned_cols=296 Identities=42% Similarity=0.683 Sum_probs=269.6
Q ss_pred eEEEeeeeecCC----cEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCce
Q psy7780 2 SVGTLEEIIDDN----HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSAT 75 (317)
Q Consensus 2 ~~~~~~~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~ 75 (317)
+|+..-++++.+ +.++..-.-..|++.+...+.|..+..|.+|.+++..+.+---||..+|+.+..|+.+ |++|
T Consensus 96 qvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvt 175 (435)
T KOG0729|consen 96 QVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVT 175 (435)
T ss_pred eeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcc
Confidence 344444544432 2333333444566666677889999999999999999999889999999999998776 9999
Q ss_pred Eeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCc
Q psy7780 76 FLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDG 121 (317)
Q Consensus 76 ~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~ 121 (317)
|.|+|| ++|+|||||||||+ |+|+..++.|+++-+|+|+++|+|++
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgeg 255 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhh
Confidence 999999 67999999999999 99999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD 201 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (317)
.+++|++|+.|+...-|||||||||++++.|++++.++++++++++.++++++|||+.+ ++
T Consensus 256 armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr-------------------gn 316 (435)
T KOG0729|consen 256 ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR-------------------GN 316 (435)
T ss_pred HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC-------------------CC
Confidence 99999999999999999999999999999999999999999999999999999999998 99
Q ss_pred eEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 202 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 202 v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
+.|+++||||+.|||||+||||+|++++|.+|+.+.|..||++|.+.+....++-++-+|+.+..-+|++|+.+|.+|+|
T Consensus 317 ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagm 396 (435)
T KOG0729|consen 317 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 396 (435)
T ss_pred eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhhhccCCCCCCC
Q psy7780 282 MALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 282 ~a~~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~ 316 (317)
+|++.+++..|..||.+|+.++++.+.+.+...-|
T Consensus 397 fairarrk~atekdfl~av~kvvkgy~kfsatpry 431 (435)
T KOG0729|consen 397 FAIRARRKVATEKDFLDAVNKVVKGYAKFSATPRY 431 (435)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccCCcch
Confidence 99999999999999999999999999875444444
|
|
| >KOG0651|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-54 Score=382.11 Aligned_cols=288 Identities=40% Similarity=0.677 Sum_probs=274.3
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|+|.+.+++.+.+|+.++|+.|++.|...+|...+.+|.+|.++-.+..++..||.++| ++..|..+ +..+|+.+
T Consensus 56 ~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ 134 (388)
T KOG0651|consen 56 IIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPRNISFENV 134 (388)
T ss_pred hhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcCccccCHHHh
Confidence 4788999999999999999999999999999999999999999999999999999999999 77777666 67899999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
+| ..++|||||||||+ ++|..++++|+.++++++.++|.||+.+.|
T Consensus 135 ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlI 214 (388)
T KOG0651|consen 135 GGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLI 214 (388)
T ss_pred CChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHH
Confidence 99 46799999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
|+.|..|+++.|||||+||||++++.+++..+..+.+++++|++++++||+++.. ++|.+|
T Consensus 215 Remf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l-------------------~rVk~I 275 (388)
T KOG0651|consen 215 RDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL-------------------HRVKTI 275 (388)
T ss_pred HHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc-------------------ccccEE
Confidence 9999999999999999999999999998888889999999999999999999988 899999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+|+.|||||+||||+|+.++.|.|+...|..|++.|.+.+.....++.+++.+..+||+|+|+++.|++|.++|++
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+.+..+-++||..++.++...++-
T Consensus 356 ~~~~~vl~Ed~~k~vrk~~~~kkl 379 (388)
T KOG0651|consen 356 EERDEVLHEDFMKLVRKQADAKKL 379 (388)
T ss_pred hhhHHHhHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765544
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=405.93 Aligned_cols=212 Identities=41% Similarity=0.658 Sum_probs=201.3
Q ss_pred CCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 72 TSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 72 ~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
++++|+|||| ++|||||||||||+ |+|++++++|+.|++.+|+++|
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 8899999999 78999999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
+|++|+.|+++|++|++.+||||||||||+++..|+++.. ....|+++++|++|||+...
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~----------------- 568 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEAL----------------- 568 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHccccccc-----------------
Confidence 9999999999999999999999999999999999964333 45678999999999999887
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
.+|+||++||||+.||+||+||||||+.|++|+|+.+.|.+||+.+++++++.+++|+++||+.|+|||||||.++|+
T Consensus 569 --k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 569 --KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred --CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCCcCHHHHHHHHHHHHh
Q psy7780 278 EAGLMALRER--RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 278 ~A~~~a~~~~--~~~it~~d~~~al~~v~~ 305 (317)
+|++.|++++ ...|+.+||++|++.+..
T Consensus 647 ~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 647 EAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 9999999986 568999999999987653
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=390.92 Aligned_cols=296 Identities=50% Similarity=0.835 Sum_probs=274.6
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|++.+.+++++++|+++++..|++.+.++++...+++|+.|.++..+..+..++|...++.+..+... |+.+|+||
T Consensus 54 ~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di 133 (389)
T PRK03992 54 IVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDI 133 (389)
T ss_pred eEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999998887666554 89999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
+| ++||+||||||||+ ++|++++.+|+.++++++..+|.|++++.+
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i 213 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLV 213 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHH
Confidence 99 36789999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|+.|+.++||||||||+|.++.+|.+...+++.++++++.+++.+++++... +++.||
T Consensus 214 ~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-------------------~~v~VI 274 (389)
T PRK03992 214 RELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-------------------GNVKII 274 (389)
T ss_pred HHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-------------------CCEEEE
Confidence 9999999999999999999999999887666666778899999999999998766 789999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+++.||++++|||||++.|+||+|+.++|.+||+.++++..+..++++..++..|+||+|+||+++|++|++.|++
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhccC---CCCCCC
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKEG---TPEGLY 316 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~~---~~~~~~ 316 (317)
+++..|+.+||.+|++++...+++. .+..||
T Consensus 355 ~~~~~i~~~d~~~A~~~~~~~~~~~~~~~~~~~~ 388 (389)
T PRK03992 355 DDRTEVTMEDFLKAIEKVMGKEEKDSMEEPGVMF 388 (389)
T ss_pred cCCCCcCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999999999999998766653 334454
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=393.40 Aligned_cols=212 Identities=36% Similarity=0.594 Sum_probs=197.8
Q ss_pred CCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 72 TSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 72 ~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
|+++|+|||| ++|++||||||||+ |+|+|.|++|+.|.+.+|+++|
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 9999999999 78999999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
+||+++.+|.+|++|+.++||||||||+|+|+++|++.. .....+++++||.+|||+..+
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R----------------- 645 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEER----------------- 645 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccc-----------------
Confidence 999999999999999999999999999999999996544 444578999999999999888
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc--CCCCCcCCCHHHHHHhCC--CCCHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIMAKD--DLSGADIK 273 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~--~~~~~~~~~~~~ia~~t~--g~s~~dl~ 273 (317)
.+|+||+||||||.+|||++||||||+.++++.|+.++|.+||+.+++ +.++++++|+++||+.+. |||||||.
T Consensus 646 --~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 646 --RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred --cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 889999999999999999999999999999999999999999999999 778899999999999866 99999999
Q ss_pred HHHHHHHHHHHHhc----------------CCCcCHHHHHHHHHHHHh
Q psy7780 274 AICTEAGLMALRER----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 274 ~l~~~A~~~a~~~~----------------~~~it~~d~~~al~~v~~ 305 (317)
.||++|.+.|+++. ...++..||++|+.++..
T Consensus 724 aLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 724 ALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 99999999999873 124788899999998763
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=368.40 Aligned_cols=283 Identities=51% Similarity=0.845 Sum_probs=266.1
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|++++.+++++.+++++++.+|++.+.+|++++.+++|+.|.++..+..++.++|...++.+..+... |..+|+|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di 124 (364)
T TIGR01242 45 IVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDI 124 (364)
T ss_pred EEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999999887776654 88999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
+| ++||+||||||||+ ++|++++.+|+.+.++++..+|.|++...+
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i 204 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLV 204 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHH
Confidence 99 25789999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|+.|+...|+||||||+|.++..+.+...+++.+.++++.+++.+++++... +++.||
T Consensus 205 ~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-------------------~~v~vI 265 (364)
T TIGR01242 205 REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-------------------GNVKVI 265 (364)
T ss_pred HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-------------------CCEEEE
Confidence 9999999999999999999999998887666666778889999999999998765 789999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+++.+|++++|||||++.|+|+.|+.++|.+||+.++.+..+..++++.+++..|+||+|+||+++|++|++.|++
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v 303 (317)
+++..|+.+||.+|++++
T Consensus 346 ~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 346 EERDYVTMDDFIKAVEKV 363 (364)
T ss_pred hCCCccCHHHHHHHHHHh
Confidence 999999999999999986
|
Many proteins may score above the trusted cutoff because an internal |
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=368.67 Aligned_cols=212 Identities=37% Similarity=0.571 Sum_probs=198.6
Q ss_pred ceEeechh----hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 74 ATFLRVVG----SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 74 ~~~~~i~g----~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..|..+|| ++||.||||||||+ |+|.|.+.|||+.++|++-.+|+|.+.+.+|++|+.|++++||||||||||
T Consensus 327 ~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 327 TKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred HHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechh
Confidence 34444554 88999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
+++.+|.. .......++++|+|.+||||..+ ..|+||++||.|+.||+||.||||||+
T Consensus 407 avG~kR~~---~~~~y~kqTlNQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL~RPGRFD~ 464 (752)
T KOG0734|consen 407 AVGGKRNP---SDQHYAKQTLNQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKALTRPGRFDR 464 (752)
T ss_pred hhcccCCc---cHHHHHHHHHHHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHhcCCCccce
Confidence 99999943 22337789999999999999987 899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
+|.+|.||...|.+||+.|+++++++.++|+.-||+-|.||+||||+|+++.|+..|..++...|+++|++.|-.+++..
T Consensus 465 ~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG 544 (752)
T KOG0734|consen 465 HVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMG 544 (752)
T ss_pred eEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred h
Q psy7780 307 K 307 (317)
Q Consensus 307 ~ 307 (317)
-
T Consensus 545 ~ 545 (752)
T KOG0734|consen 545 P 545 (752)
T ss_pred c
Confidence 3
|
|
| >KOG0736|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=378.83 Aligned_cols=216 Identities=37% Similarity=0.581 Sum_probs=199.0
Q ss_pred CCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 72 TSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
|+++|+|||| ++|||||||||||+ |+|.|+...|++|.+.+|+++|+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 8899999999 78999999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 119 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
|++|+++|++|++||..+||||||||+|+++++|+.+++++ .-+.|+++|+|.+|||+.....
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s---------------- 809 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSS---------------- 809 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCC----------------
Confidence 99999999999999999999999999999999998766654 3577999999999999985311
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC-CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCC-CCCHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD-DLSGADIKAIC 276 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~-g~s~~dl~~l~ 276 (317)
.+|+||+||||||.|||||+||||||+.++++++ +.+.+..+|+...+++.++.++|+.++|+.+. .|||||+.++|
T Consensus 810 -~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 810 -QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred -CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 7899999999999999999999999999999998 67889999999999999999999999999974 79999999999
Q ss_pred HHHHHHHHHhc-----------------CCCcCHHHHHHHHHHHHh
Q psy7780 277 TEAGLMALRER-----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 277 ~~A~~~a~~~~-----------------~~~it~~d~~~al~~v~~ 305 (317)
..|.+.|+++. .-.|+++||.+|+++...
T Consensus 889 SdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 889 SDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 99999999873 125999999999998653
|
|
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=345.93 Aligned_cols=216 Identities=38% Similarity=0.576 Sum_probs=195.3
Q ss_pred cCCCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 70 NQTSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 70 ~~~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
..|.+.|+||.| ++|+.||||||||+ |+|.|++.+||.|+.+.+.+|
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 348999999999 56788999999999 999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHH-HHHHHHHHHHhcCCCcccccccchhhhccccc
Q psy7780 117 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREI-QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL 195 (317)
Q Consensus 117 ~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 195 (317)
|.|++|+.+|-+|+.|+.++|++|||||||+|+.+|+++ ++++. .++-++||.+|||+....++.
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~----------- 350 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENS----------- 350 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccc-----------
Confidence 999999999999999999999999999999999999543 33333 455579999999998764321
Q ss_pred ccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 196 IYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 196 ~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
.-|+|+++||-||.||+|++| ||+++|++|+|+.++|..+++..++....+++++++.+++.++||||+||.++
T Consensus 351 ----k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 351 ----KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred ----eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH
Confidence 348999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-----------------CCCcCHHHHHHHHHHHHh
Q psy7780 276 CTEAGLMALRER-----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 276 ~~~A~~~a~~~~-----------------~~~it~~d~~~al~~v~~ 305 (317)
|++|.|.+.|+. ...++++||++|+.++..
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 999999999852 246999999999998754
|
|
| >KOG0731|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=359.44 Aligned_cols=216 Identities=41% Similarity=0.687 Sum_probs=204.4
Q ss_pred CCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 72 TSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
+.++|.||.| +.||.||||||||+ |+|.|+|.||+.+++|+++.+++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 6689999998 78999999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhCCceEeecccccccccccC-CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 119 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD-SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
|..+..++++|..|+.++||||||||||+++..|++ ...+++.+..++|+|+|.+|||+.+.
T Consensus 386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~----------------- 448 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS----------------- 448 (774)
T ss_pred ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-----------------
Confidence 999999999999999999999999999999999953 23356677889999999999999887
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 276 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~ 276 (317)
.+|+|+++|||++.||+||+||||||+.|+++.|+..+|.+|++.|+++.++. +++++..+|.+|.||+|+||.++|
T Consensus 449 --~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 449 --KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred --CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 88999999999999999999999999999999999999999999999999885 888999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 277 TEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 277 ~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
++|+..|.|++...|+..||+.|+++++..
T Consensus 527 neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 527 NEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred hHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 999999999999999999999999988865
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=352.93 Aligned_cols=209 Identities=39% Similarity=0.657 Sum_probs=200.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|+.||||||||+ |+|.|++.||+++++|+++.+|+|-+...+|++|..|++++||||||||||+++.+|+....+
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg 264 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG 264 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC
Confidence 78999999999999 999999999999999999999999999999999999999999999999999999999766667
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
+..+..++++|+|.+|||+..+ ..|++|++||||+.+||||+||||||+.|.++.|+...|
T Consensus 265 gnderEQTLNQlLvEmDGF~~~-------------------~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 265 GNDEREQTLNQLLVEMDGFGGN-------------------EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred CchHHHHHHHHHHhhhccCCCC-------------------CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhH
Confidence 7788899999999999999976 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
.+|++.|.++.++..++++..+|+.|.||+|+|+.+++++|+..|.++++..|++.||.+|..+++.....
T Consensus 326 e~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~er 396 (596)
T COG0465 326 EQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPER 396 (596)
T ss_pred HHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999976544
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=346.93 Aligned_cols=186 Identities=36% Similarity=0.593 Sum_probs=172.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|||||||||||+ |+|+|++++|+.|+++++++.+.|++++.||++|+.|+..+|||+||||||+++++|..
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---- 300 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---- 300 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----
Confidence 78999999999999 99999999999999999999999999999999999999999999999999999999943
Q ss_pred chhHH-HHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 159 GEREI-QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 159 ~~~~~-~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
++.++ .+++.+||+.||++...... ..+|+||+||||||.|||||+|+||||+.|.+..|++.+
T Consensus 301 aqreMErRiVaQLlt~mD~l~~~~~~---------------g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 301 AQREMERRIVAQLLTSMDELSNEKTK---------------GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccC---------------CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 33343 45668999999998755221 167999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|.+||+..++++.++.++|+..||+.|.||.||||.+||.+|++.|+++
T Consensus 366 R~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 366 REEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred HHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=312.65 Aligned_cols=222 Identities=34% Similarity=0.523 Sum_probs=201.7
Q ss_pred CCceEeechh---------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCc
Q psy7780 72 TSATFLRVVG---------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDG 121 (317)
Q Consensus 72 ~~~~~~~i~g---------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~ 121 (317)
++.+|+||.| -+|||||||||||+ |+|++++.+|+.+++++|++.++|++
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdg 195 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDG 195 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhH
Confidence 7889999999 56999999999999 99999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD 201 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (317)
.++|+++|+.|++.+|||+||||+|+++-.|.-.. -...+..+++.||++|||+..+ ..
T Consensus 196 ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe--lRGDVsEiVNALLTelDgi~en-------------------eG 254 (368)
T COG1223 196 ARRIHELYERARKAAPCIVFIDELDAIALDRRYQE--LRGDVSEIVNALLTELDGIKEN-------------------EG 254 (368)
T ss_pred HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH--hcccHHHHHHHHHHhccCcccC-------------------Cc
Confidence 99999999999999999999999999987663221 1234678899999999999876 88
Q ss_pred eEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHH-HHHHHHH
Q psy7780 202 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIK-AICTEAG 280 (317)
Q Consensus 202 v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~-~l~~~A~ 280 (317)
|+.|++||+|+.||+|+++ ||...|+|.+|+.++|.+|++.+.+++++.-+.++..++..|.|+||+||+ .++..|.
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aL 332 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTAL 332 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999889999999999999999998 6778888
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 281 LMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 281 ~~a~~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
..|+.+++..|+.+|+++|+++ ..++....|+.||+
T Consensus 333 h~Ai~ed~e~v~~edie~al~k-~r~~r~~~p~h~~~ 368 (368)
T COG1223 333 HRAIAEDREKVEREDIEKALKK-ERKRRAPRPKHLYV 368 (368)
T ss_pred HHHHHhchhhhhHHHHHHHHHh-hccccCCCcccccC
Confidence 9999999999999999999998 33444455788875
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=334.44 Aligned_cols=282 Identities=30% Similarity=0.453 Sum_probs=234.0
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhh--hccCCCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTA--VANQTSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i 79 (317)
.|++|.|++++++++|+++++.++++.+...+..+.+++|+.+.+++++...+..+|... +.. ++..|+++|+||
T Consensus 108 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~p~v~~~dI 184 (512)
T TIGR03689 108 EIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPKAE---VEDLVLEEVPDVTYADI 184 (512)
T ss_pred ceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCHhH---HhcceeecCCCCCHHHc
Confidence 367899999999999999999999999999999999999999999999988888887542 222 233489999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCc----------eEEEEechhhhh
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSA----------TFLRVVGSELIQ 115 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~----------~~~~v~~s~l~~ 115 (317)
+| ++|||||||||||+ ++|++++. .|+.++++++++
T Consensus 185 gGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~ 264 (512)
T TIGR03689 185 GGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLN 264 (512)
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcc
Confidence 98 57899999999999 89998754 477888899999
Q ss_pred hhcCCchHHHHHHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhc
Q psy7780 116 KYLGDGPKLVRELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYS 191 (317)
Q Consensus 116 ~~~g~~~~~l~~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~ 191 (317)
+|.|++++.++.+|+.|+.. .||||||||+|+++.+|+...++ ..-.+++.+||++||++...
T Consensus 265 kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~--d~e~~il~~LL~~LDgl~~~----------- 331 (512)
T TIGR03689 265 KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS--DVETTVVPQLLSELDGVESL----------- 331 (512)
T ss_pred cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc--hHHHHHHHHHHHHhcccccC-----------
Confidence 99999999999999999875 69999999999999888432221 12245678999999999876
Q ss_pred ccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC-CCCC---------cCCCHHHHH
Q psy7780 192 SLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR-MTLA---------EDVNLQELI 261 (317)
Q Consensus 192 ~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~-~~~~---------~~~~~~~ia 261 (317)
++++||+|||+++.||||++||||||++|+|++|+.++|++||+.++.. .++. ...++..++
T Consensus 332 --------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~ 403 (512)
T TIGR03689 332 --------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALI 403 (512)
T ss_pred --------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999864 3331 111222222
Q ss_pred H-----------------------------hCCCCCHHHHHHHHHHHHHHHHHh----cCCCcCHHHHHHHHHHHHhhh
Q psy7780 262 M-----------------------------AKDDLSGADIKAICTEAGLMALRE----RRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 262 ~-----------------------------~t~g~s~~dl~~l~~~A~~~a~~~----~~~~it~~d~~~al~~v~~~~ 307 (317)
+ .++.+||++|+++|.+|...|+++ +...++.+|+..|+..-....
T Consensus 404 ~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~ 482 (512)
T TIGR03689 404 QRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRES 482 (512)
T ss_pred HHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccc
Confidence 2 245689999999999999998876 356899999999998765444
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=329.55 Aligned_cols=183 Identities=36% Similarity=0.611 Sum_probs=174.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|+|||||||||. |+|..++..|+.|.+++|+++|+|.+|..+|++|++|+..+|||+||||+|+++++|+.+.++
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG 782 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG 782 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC
Confidence 78999999999999 999999999999999999999999999999999999999999999999999999999765554
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
- ..|+++++|++|||.++. .+|.|+++|.|||.|||||+||||+|+.++-|.|++.+|
T Consensus 783 V---TDRVVNQlLTelDG~Egl-------------------~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 783 V---TDRVVNQLLTELDGAEGL-------------------DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred c---hHHHHHHHHHhhcccccc-------------------ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 3 468999999999999987 889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
.+|++...+....+.++|++.+|..|+|||||||..++..|.+.|+.+
T Consensus 841 l~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 841 LEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999888999999999999999999999999999999888765
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=331.39 Aligned_cols=200 Identities=47% Similarity=0.691 Sum_probs=186.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
..|||||||||||+ |+|++++.+|+.+++++++++|+|+++++++.+|..|++.+||||||||+|++++.|+...++
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~ 357 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG 357 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch
Confidence 46899999999999 999999999999999999999999999999999999999999999999999999999544333
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.. .+++.++|.++|++... .+|+||+|||+||.||+|++||||||+.|++|+|+.++|
T Consensus 358 ~~---~r~~~~lL~~~d~~e~~-------------------~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 358 SG---RRVVGQLLTELDGIEKA-------------------EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred HH---HHHHHHHHHHhcCCCcc-------------------CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH
Confidence 22 68999999999999987 889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--CCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMT--LAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-RMKVTNEDFKKSKESV 303 (317)
Q Consensus 239 ~~Il~~~l~~~~--~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-~~~it~~d~~~al~~v 303 (317)
.+||+.+++... +..++++..+++.|+||+|+||..+|++|++.+.++. ...++++||.+|++++
T Consensus 416 ~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 416 LEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhc
Confidence 999999998544 3578999999999999999999999999999999998 7889999999999984
|
|
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=303.88 Aligned_cols=192 Identities=33% Similarity=0.549 Sum_probs=175.8
Q ss_pred CCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 72 TSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
|++.|+||.| ++||||||||||+. |+|.|.+.+||+|+.|+|+++|.
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 9999999999 67899999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 119 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
|++++.++.+|+.|+++.|+||||||||++|+.|+.+.+ ....++-.+||.+|.|+....
T Consensus 208 GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs---easRRIKTEfLVQMqGVG~d~----------------- 267 (439)
T KOG0739|consen 208 GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES---EASRRIKTEFLVQMQGVGNDN----------------- 267 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch---HHHHHHHHHHHHhhhccccCC-----------------
Confidence 999999999999999999999999999999999854332 223455679999999987652
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
..|+|+++||-||.||.|++| ||+++|++|+|+..+|..+|+.|+...+.. .+.|+.+++++|+||||+||.-+++
T Consensus 268 -~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVr 344 (439)
T KOG0739|consen 268 -DGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVR 344 (439)
T ss_pred -CceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEeh
Confidence 689999999999999999999 999999999999999999999999887765 6778999999999999999999999
Q ss_pred HHHHHHHHh
Q psy7780 278 EAGLMALRE 286 (317)
Q Consensus 278 ~A~~~a~~~ 286 (317)
.|.|..+|+
T Consensus 345 DalmePvRk 353 (439)
T KOG0739|consen 345 DALMEPVRK 353 (439)
T ss_pred hhhhhhHHH
Confidence 999988876
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=326.21 Aligned_cols=206 Identities=39% Similarity=0.655 Sum_probs=191.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.||+||||||||+ ++|++++.+|+.++++++.+.+.|.+++.++.+|+.|+.++||||||||+|.++.+++....+
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~ 169 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG 169 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC
Confidence 46899999999999 999999999999999999999999999999999999999999999999999999888654344
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..++++++|.+||++.+. ++++||+|||+++.|||+++||||||+.|+++.|+.++|
T Consensus 170 ~~~~~~~~~~~lL~~~d~~~~~-------------------~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 170 GNDEREQTLNQLLVEMDGFGTN-------------------TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred ccHHHHHHHHHHHhhhccccCC-------------------CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 4556778999999999999776 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+||+.++++.+...+.++..++..|.||||+||.++|++|+..|.+++...|+.+||.+|++++...
T Consensus 231 ~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 231 EEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 99999999988877888999999999999999999999999999999998999999999999998754
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=336.48 Aligned_cols=202 Identities=44% Similarity=0.695 Sum_probs=185.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
+|||||||||||+ ++|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|+....
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-- 567 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-- 567 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--
Confidence 5899999999999 99999999999999999999999999999999999999999999999999999998854322
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
.....++++++|.+||++... .+++||+|||+|+.||+|++||||||+.|++|+|+.++|.
T Consensus 568 ~~~~~~~~~~lL~~ldg~~~~-------------------~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~ 628 (733)
T TIGR01243 568 TSVTDRIVNQLLTEMDGIQEL-------------------SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARK 628 (733)
T ss_pred ccHHHHHHHHHHHHhhcccCC-------------------CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHH
Confidence 224567889999999998766 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------------CCCcCHHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------------RMKVTNEDFKKSKE 301 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------------~~~it~~d~~~al~ 301 (317)
+||+.++++.++..++++..+|+.|+||||+||.++|++|++.|+++. ...|+.+||.+|++
T Consensus 629 ~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~ 708 (733)
T TIGR01243 629 EIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALK 708 (733)
T ss_pred HHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998852 13699999999998
Q ss_pred HHHh
Q psy7780 302 SVLY 305 (317)
Q Consensus 302 ~v~~ 305 (317)
++..
T Consensus 709 ~~~p 712 (733)
T TIGR01243 709 KVKP 712 (733)
T ss_pred HcCC
Confidence 7654
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=316.12 Aligned_cols=201 Identities=25% Similarity=0.403 Sum_probs=179.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++.+.++|+|++++.++++|+.|+..+||||||||||.++..+...+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~-- 338 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG-- 338 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--
Confidence 47899999999999 9999999999999999999999999999999999999999999999999999987653322
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+++..|+... .+|+||+|||+++.||++++||||||+.++++.|+.++|
T Consensus 339 d~~~~~rvl~~lL~~l~~~~---------------------~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 339 DSGTTNRVLATFITWLSEKK---------------------SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CchHHHHHHHHHHHHHhcCC---------------------CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 22345677888888887532 679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC--cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLA--EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~--~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+||+.++++.... .+.+++.+++.|+||||+||+++|.+|+..|..+++ .++.+||..|++++...
T Consensus 398 ~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCC
Confidence 99999999886433 478899999999999999999999999999987764 58999999999988753
|
|
| >KOG0737|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=296.94 Aligned_cols=200 Identities=35% Similarity=0.556 Sum_probs=181.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|+|||||||||+ |+|.+.|+.|+.|+.+.+.++|+|++++.++.+|..|.+.+||||||||+|.++..|. .
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s 204 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----S 204 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----c
Confidence 67889999999999 9999999999999999999999999999999999999999999999999999999882 3
Q ss_pred chhHHHHHH-HHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 159 GEREIQRTM-LELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 159 ~~~~~~~~l-~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
+++|..+.+ .+|+...||+.+... ..|+|++|||||..||.|++| |+.++++++.|+.++
T Consensus 205 ~dHEa~a~mK~eFM~~WDGl~s~~~-----------------~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 205 TDHEATAMMKNEFMALWDGLSSKDS-----------------ERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQ 265 (386)
T ss_pred chHHHHHHHHHHHHHHhccccCCCC-----------------ceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhh
Confidence 344555555 699999999988722 359999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh----c------------------------CC
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRE----R------------------------RM 289 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~----~------------------------~~ 289 (317)
|.+||+..+++.++++++|+.++|..|+||||.||+++|+.|++..+++ + ..
T Consensus 266 R~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r 345 (386)
T KOG0737|consen 266 RRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLR 345 (386)
T ss_pred HHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccC
Confidence 9999999999999999999999999999999999999999999877654 1 25
Q ss_pred CcCHHHHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKESVL 304 (317)
Q Consensus 290 ~it~~d~~~al~~v~ 304 (317)
.++++||..+.++|-
T Consensus 346 ~l~~eDf~~a~~~v~ 360 (386)
T KOG0737|consen 346 PLEQEDFPKAINRVS 360 (386)
T ss_pred cccHHHHHHHHHhhh
Confidence 688999999998554
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=320.15 Aligned_cols=207 Identities=37% Similarity=0.640 Sum_probs=193.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++...+.|.+...++.+|+.|+.++||||||||+|+++..|+....+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 297 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG 297 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC
Confidence 46899999999999 999999999999999999999999999999999999999999999999999999888655555
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+.++++.++|.++|++... .+|+||+|||+++.||++++||||||+.|++++|+.++|
T Consensus 298 ~~~e~~~~L~~LL~~~dg~~~~-------------------~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 298 GNDEREQTLNQLLTEMDGFKGN-------------------KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred CcHHHHHHHHHHHhhhccccCC-------------------CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence 5667788999999999998766 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
.+||+.++++.....+.++..+|+.|.||+|+||+++|++|+..|.+++...|+.+||++|+++++...
T Consensus 359 ~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~ 427 (638)
T CHL00176 359 LDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGL 427 (638)
T ss_pred HHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhh
Confidence 999999999877778889999999999999999999999999999999999999999999999987543
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=329.02 Aligned_cols=202 Identities=17% Similarity=0.243 Sum_probs=173.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh----------cC-----------------------------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY----------LG----------------------------- 119 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~----------~g----------------------------- 119 (317)
++|++||||||||+ |+|.++++||+.|+++++++++ +|
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~ 1711 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMD 1711 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhh
Confidence 78999999999999 9999999999999999999765 12
Q ss_pred --Cch--HHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc
Q psy7780 120 --DGP--KLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL 195 (317)
Q Consensus 120 --~~~--~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 195 (317)
+++ ..|+.+|+.|++++||||||||||+++.+.. . ..++.+++++||+......
T Consensus 1712 m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~--~ltL~qLLneLDg~~~~~s------------- 1769 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------N--YLSLGLLVNSLSRDCERCS------------- 1769 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------c--eehHHHHHHHhccccccCC-------------
Confidence 222 3489999999999999999999999986521 0 1357899999998742100
Q ss_pred ccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH--hcCCCCCc-CCCHHHHHHhCCCCCHHHH
Q psy7780 196 IYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH--TSRMTLAE-DVNLQELIMAKDDLSGADI 272 (317)
Q Consensus 196 ~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~--l~~~~~~~-~~~~~~ia~~t~g~s~~dl 272 (317)
..+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++..+ .++..+.. .+++..+|+.|.|||||||
T Consensus 1770 ---~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADL 1846 (2281)
T CHL00206 1770 ---TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDL 1846 (2281)
T ss_pred ---CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHH
Confidence 16799999999999999999999999999999999999999998865 44555553 3689999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 273 KAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 273 ~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
+++|++|++.|+++++..|+.++|..|+.+++...+
T Consensus 1847 anLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~ 1882 (2281)
T CHL00206 1847 VALTNEALSISITQKKSIIDTNTIRSALHRQTWDLR 1882 (2281)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999986543
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=310.45 Aligned_cols=205 Identities=37% Similarity=0.657 Sum_probs=193.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+|+.++++++...+.|.+...++.+|..|+..+||||||||+|+++.+|+....+
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g 266 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 266 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC
Confidence 58899999999999 999999999999999999999999999999999999999999999999999999988654455
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
+..+..++++++|.+||++.+. ..++||+|||+|+.||+|++||||||+.|+++.|+.++|
T Consensus 267 ~~~~~~~~ln~lL~~mdg~~~~-------------------~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 267 GHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred CchHHHHHHHHHHHhhhcccCC-------------------CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 5566778999999999999876 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.+||+.|+++.++..++++..+++.|.||||+||.++|++|+..|.++++..|+.+||++|+.++..
T Consensus 328 ~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 328 EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 9999999999998889999999999999999999999999999999999999999999999998864
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=287.92 Aligned_cols=206 Identities=34% Similarity=0.528 Sum_probs=179.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-eEEEEechhhhhhhcCCchHHHHHHHHHHHhhC--------CceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-TFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA--------PSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~--------P~Ii~iDEiD~l~ 149 (317)
++|||||||||||+ .+..-+++ +--.|++++++++|+|++|.++|++|..|.+-. --||+|||||++|
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAIC 337 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAIC 337 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHH
Confidence 67999999999999 67777764 566789999999999999999999999996422 2499999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
.+|++...+ ..--..+++|||..|||++.. ++|+||+-|||.|.||+||+|||||+..++
T Consensus 338 KqRGS~~g~-TGVhD~VVNQLLsKmDGVeqL-------------------NNILVIGMTNR~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 338 KQRGSMAGS-TGVHDTVVNQLLSKMDGVEQL-------------------NNILVIGMTNRKDLIDEALLRPGRLEVQME 397 (744)
T ss_pred HhcCCCCCC-CCccHHHHHHHHHhcccHHhh-------------------hcEEEEeccCchhhHHHHhcCCCceEEEEE
Confidence 999654332 223356889999999999988 899999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCC----CCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc---------------CCC
Q psy7780 230 FPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER---------------RMK 290 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~----~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~---------------~~~ 290 (317)
+.+|+++.|.+|+++|++++ .++.++|+.++|..|..||||+|+.+++.|...|..+. .-.
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lk 477 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLK 477 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhhee
Confidence 99999999999999998876 35689999999999999999999999999998887652 236
Q ss_pred cCHHHHHHHHHHHHhhh
Q psy7780 291 VTNEDFKKSKESVLYRK 307 (317)
Q Consensus 291 it~~d~~~al~~v~~~~ 307 (317)
|+++||..|++.+....
T Consensus 478 V~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAF 494 (744)
T ss_pred ecHHHHHHHHHhcCccc
Confidence 99999999999887544
|
|
| >KOG0740|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=280.40 Aligned_cols=215 Identities=34% Similarity=0.496 Sum_probs=188.5
Q ss_pred CCCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 71 QTSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 71 ~~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
.+++.|+|++| ..|+.||||+|||+ |||.|+++.|+.+++++|.++|
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 37899999999 67889999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
+|++++.+|.+|..|+..+|+||||||+|.++.+|.+.... ...+...++|.++++..+...
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e---~srr~ktefLiq~~~~~s~~~--------------- 288 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHE---SSRRLKTEFLLQFDGKNSAPD--------------- 288 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccc---cchhhhhHHHhhhccccCCCC---------------
Confidence 99999999999999999999999999999999999432222 224677899999999877633
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 276 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~ 276 (317)
++|+||+|||+||.+|.|++| ||.+++++|+|+.++|..+|+.++.+.+.. .+.++..+++.|+||++.||.++|
T Consensus 289 --drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ 364 (428)
T KOG0740|consen 289 --DRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALC 364 (428)
T ss_pred --CeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHH
Confidence 689999999999999999999 999999999999999999999999876433 567899999999999999999999
Q ss_pred HHHHHHHHHhc-------------CCCcCHHHHHHHHHHHHhhh
Q psy7780 277 TEAGLMALRER-------------RMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 277 ~~A~~~a~~~~-------------~~~it~~d~~~al~~v~~~~ 307 (317)
.+|++--.+.. -..++..||.++++.+...-
T Consensus 365 kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 365 KEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred HHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 99987554432 34688999999999876443
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=283.18 Aligned_cols=194 Identities=37% Similarity=0.576 Sum_probs=179.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC-CceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
..|+|||||||||+ |+|++.++.++.+++++++.++.|++++.+|++|+.|.+++ |+||||||+|+++++|.....
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~ 299 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD 299 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch
Confidence 67999999999999 99999999999999999999999999999999999999999 999999999999999854332
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
...++..+++..+|+..+. ++++||++||+|+.||++++| ||||+.+++..|+..+
T Consensus 300 ----~e~Rv~sqlltL~dg~~~~-------------------~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 300 ----VESRVVSQLLTLLDGLKPD-------------------AKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDG 355 (693)
T ss_pred ----HHHHHHHHHHHHHhhCcCc-------------------CcEEEEEecCCccccChhhhc-CCCcceeeecCCCchh
Confidence 3467788999999998866 889999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
|.+|++.+.++++..+++++.++|..|.||+|+|+.++|++|++.+.++ ++++|..|+..+.
T Consensus 356 RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i~ 417 (693)
T KOG0730|consen 356 RLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMGIR 417 (693)
T ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcCC
Confidence 9999999999999988899999999999999999999999999999987 6777777766554
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=263.56 Aligned_cols=190 Identities=18% Similarity=0.132 Sum_probs=147.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhh-----CCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-----APSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-----~P~Ii~iDEiD~l~~~r~ 153 (317)
..+||||||||||+ ++|+++|++|+.+++++|.++|+||+++.||++|..|++. +||||||||||+++++|+
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~ 229 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG 229 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC
Confidence 45789999999999 9999999999999999999999999999999999999864 699999999999999985
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
+.+.. ...+.+..+||+.+|+...-.-.. .+. -.....+|+||+|||+|+.|||+|+||||||+.+ +.|
T Consensus 230 ~~~~t--v~~qiV~~tLLnl~D~p~~v~l~G----~w~---~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lP 298 (413)
T PLN00020 230 TTQYT--VNNQMVNGTLMNIADNPTNVSLGG----DWR---EKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAP 298 (413)
T ss_pred CCCcc--hHHHHHHHHHHHHhcCCccccccc----ccc---ccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCC
Confidence 32211 112333468888888642100000 000 0000167999999999999999999999999864 689
Q ss_pred CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC----CCHHHHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD----LSGADIKAICTEAGLMA 283 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g----~s~~dl~~l~~~A~~~a 283 (317)
+.++|.+||+.++++..+. ..++..++..+.| |.||--..+..++...-
T Consensus 299 d~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~ 351 (413)
T PLN00020 299 TREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKW 351 (413)
T ss_pred CHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHH
Confidence 9999999999999988765 4678888888766 56766666666665433
|
|
| >KOG0732|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=296.53 Aligned_cols=217 Identities=37% Similarity=0.570 Sum_probs=189.5
Q ss_pred ccCCCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcC-----CceEEEEe
Q psy7780 69 ANQTSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQT-----SATFLRVV 109 (317)
Q Consensus 69 ~~~~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~ 109 (317)
..+..++|++||| ++||+||||||||+ |+|.++ +..|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 4457889999999 68999999999998 777776 35788889
Q ss_pred chhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhh
Q psy7780 110 GSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEV 189 (317)
Q Consensus 110 ~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~ 189 (317)
+.+..++|+|+.++.++.+|+.|++++|+|||+||||-|++.|+. ..+....++...+|..|||+.+.
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs---kqEqih~SIvSTLLaLmdGldsR--------- 404 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALMDGLDSR--------- 404 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc---hHHHhhhhHHHHHHHhccCCCCC---------
Confidence 999999999999999999999999999999999999999999843 23333456778999999999998
Q ss_pred hcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCC
Q psy7780 190 YSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 268 (317)
Q Consensus 190 ~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s 268 (317)
++|+||+|||||+.+|||++||||||+.++||+|+.++|.+|+.++.++..-. ...-+..+|+.|.||-
T Consensus 405 ----------gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 405 ----------GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYG 474 (1080)
T ss_pred ----------CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999998876422 3334678999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----------------CCCcCHHHHHHHHHHHHhhh
Q psy7780 269 GADIKAICTEAGLMALRER----------------RMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 269 ~~dl~~l~~~A~~~a~~~~----------------~~~it~~d~~~al~~v~~~~ 307 (317)
|+||+++|.+|++.++++. ...|...||..|+.++...-
T Consensus 475 gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 475 GADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred hHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 9999999999999999874 23588899999998877543
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=275.94 Aligned_cols=202 Identities=44% Similarity=0.688 Sum_probs=180.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|+++..++.+|+.|..+.|+||||||+|.+++++......
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~ 293 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGE 293 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcch
Confidence 35799999999999 999999999999999999999999999999999999999999999999999999887432222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.-.+++.+|+..+|++... +.++||++||+++.||++++|||||++.++++.|+.++|
T Consensus 294 ---~~~~~~~~Ll~~ld~l~~~-------------------~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R 351 (733)
T TIGR01243 294 ---VEKRVVAQLLTLMDGLKGR-------------------GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRAR 351 (733)
T ss_pred ---HHHHHHHHHHHHhhccccC-------------------CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHH
Confidence 1245667888888888765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-------------------CCCcCHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-------------------RMKVTNEDFKKS 299 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-------------------~~~it~~d~~~a 299 (317)
.+||+.+.+++++..+.++..+++.|.||+++|+..+|++|++.++++. ...++.+||..|
T Consensus 352 ~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 352 KEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999999999888888999999999999999999999999999887652 235789999999
Q ss_pred HHHHHh
Q psy7780 300 KESVLY 305 (317)
Q Consensus 300 l~~v~~ 305 (317)
++.+..
T Consensus 432 l~~v~p 437 (733)
T TIGR01243 432 LKMVEP 437 (733)
T ss_pred Hhhccc
Confidence 987654
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0743|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-26 Score=215.44 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=156.8
Q ss_pred EecccccccccccCCCCchhhhhccC-CCceEeechh-----hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 46 LNHKVHAVVGVLSDDTDPMVTAVANQ-TSATFLRVVG-----SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~i~g-----~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
-|++++..+.+-|+.++.+++.+... ....|..-.| ++|||||||||||+ |+|+++++.++.++.+++..
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~- 273 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL- 273 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-
Confidence 36677788888788888888887776 3344444444 89999999999999 99999999999999888543
Q ss_pred hcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC--chh--HHHHHHHHHHHHhcCCCcccccccchhhhcc
Q psy7780 117 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG--GER--EIQRTMLELLNQLDGFDSRVQNRRLSEVYSS 192 (317)
Q Consensus 117 ~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~--~~~--~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~ 192 (317)
.. .++.+...+... +||+|++||+-+..+...... ... ...-+|+.||+.+||+.+...
T Consensus 274 ----n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg---------- 336 (457)
T KOG0743|consen 274 ----DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG---------- 336 (457)
T ss_pred ----cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC----------
Confidence 22 388888876655 899999999987644322221 111 123478899999999998833
Q ss_pred cccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC--CCHH
Q psy7780 193 LTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD--LSGA 270 (317)
Q Consensus 193 ~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g--~s~~ 270 (317)
+..++|+|||.++.|||||+||||+|.+|+++..+.++-+.+++.|+..-. +..-+++|.+..++ .|||
T Consensus 337 -------~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA 407 (457)
T KOG0743|consen 337 -------DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPA 407 (457)
T ss_pred -------CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHH
Confidence 367899999999999999999999999999999999999999999986432 22335566655444 5999
Q ss_pred HHHHHH
Q psy7780 271 DIKAIC 276 (317)
Q Consensus 271 dl~~l~ 276 (317)
|+...+
T Consensus 408 ~V~e~l 413 (457)
T KOG0743|consen 408 QVAEEL 413 (457)
T ss_pred HHHHHH
Confidence 987554
|
|
| >KOG0736|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=204.27 Aligned_cols=204 Identities=24% Similarity=0.355 Sum_probs=175.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
..|++|+||||||+ ++|+++|+|++.++|.++.....+.++..+...|.+|+.++|||||+-++|.++..+. .+
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d---gg 509 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD---GG 509 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC---Cc
Confidence 47999999999999 9999999999999999999999999999999999999999999999999999985542 24
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
....+.+.+..++. .|.+... ..+++||++|++.+.|++.+++ .|-+.|.+|.|++++|
T Consensus 510 ed~rl~~~i~~~ls-~e~~~~~------------------~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qR 568 (953)
T KOG0736|consen 510 EDARLLKVIRHLLS-NEDFKFS------------------CPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQR 568 (953)
T ss_pred hhHHHHHHHHHHHh-cccccCC------------------CCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHH
Confidence 45556666666665 3333322 1789999999999999999999 8889999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH---hc-----------------CCCcCHHHHHH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR---ER-----------------RMKVTNEDFKK 298 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~---~~-----------------~~~it~~d~~~ 298 (317)
.+||++++....+..++....++.+|.||+.+|+..++..+...+.. +. ...++++||.+
T Consensus 569 l~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~k 648 (953)
T KOG0736|consen 569 LEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDK 648 (953)
T ss_pred HHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHH
Confidence 99999999999999999999999999999999999998776333322 11 25799999999
Q ss_pred HHHHHHhhhcc
Q psy7780 299 SKESVLYRKKE 309 (317)
Q Consensus 299 al~~v~~~~~~ 309 (317)
++.++.+.+..
T Consensus 649 als~~~~~fs~ 659 (953)
T KOG0736|consen 649 ALSRLQKEFSD 659 (953)
T ss_pred HHHHHHHhhhh
Confidence 99999887765
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=169.76 Aligned_cols=128 Identities=40% Similarity=0.617 Sum_probs=111.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC-CceEeecccccccccccCCCCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+|++||||||||+ ++|+.++.+++.++++++.+.+.+++.+.++.+|..|+..+ ||||||||+|.+++.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 3789999999999 99999999999999999999999999999999999999998 9999999999999887 222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
.......++..++..++..... ..++++|+|||+++.++++++| +||+++|++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~------------------~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSK------------------NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTT------------------SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccc------------------cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3344456677888888877654 1569999999999999999998 89999999974
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-23 Score=184.43 Aligned_cols=210 Identities=21% Similarity=0.284 Sum_probs=165.5
Q ss_pred ceEeechhhHHHhhhcCCCchh---hhhhcCC---------ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC---C-
Q psy7780 74 ATFLRVVGSELIQKYLGDGPKL---AVANQTS---------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA---P- 137 (317)
Q Consensus 74 ~~~~~i~g~~Ll~G~pGtGKT~---aiA~~~~---------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~---P- 137 (317)
.+|..+ +|++||||||||+ |+|+.+. ..++++++.++++||++|+.+.+..+|+...+.. .
T Consensus 174 It~NRl---iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 174 ITWNRL---ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeeeeE---EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 567666 8999999999999 9999984 4789999999999999999999999999887543 2
Q ss_pred -ceEeecccccccccccCCCCC-chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 138 -SIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 138 -~Ii~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
-.++|||+++++..|....++ ..++.-|+++.+|+++|.+... .+|++++|+|-.+.||
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-------------------~NvliL~TSNl~~siD 311 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-------------------PNVLILATSNLTDSID 311 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-------------------CCEEEEeccchHHHHH
Confidence 357899999999888544333 3356679999999999999887 8999999999999999
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---CC--C--------cCCC-----HHHHHH-hCCCCCHHHHHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---TL--A--------EDVN-----LQELIM-AKDDLSGADIKAIC 276 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---~~--~--------~~~~-----~~~ia~-~t~g~s~~dl~~l~ 276 (317)
.|+.. |-|-+.++++|+.++|.+|++.++..+ ++ . ..+. ...++. .+.|+||+-|+.+=
T Consensus 312 ~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP 389 (423)
T KOG0744|consen 312 VAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLP 389 (423)
T ss_pred HHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhh
Confidence 99999 999999999999999999999987542 11 0 0011 111222 25899999999886
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 277 TEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 277 ~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
--|... --...+|+.++|..|+-...+++.+
T Consensus 390 ~Laha~--y~~~~~v~~~~fl~al~ea~~k~~~ 420 (423)
T KOG0744|consen 390 LLAHAE--YFRTFTVDLSNFLLALLEAAKKLLS 420 (423)
T ss_pred HHHHHh--ccCCCccChHHHHHHHHHHHHHHhh
Confidence 543322 2234689999999998877766544
|
|
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=184.00 Aligned_cols=198 Identities=22% Similarity=0.322 Sum_probs=147.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCC-ceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-SIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P-~Ii~iDEiD~l~~~r~~~~~ 157 (317)
-+|||||||||||+ -+|.+.|..+-.+.+.++.-. -.+....|+++|+.|++... -++||||.|+++..|...
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt-- 462 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT-- 462 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--
Confidence 35999999999999 899999999999998886542 12446689999999987664 478999999999888432
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
..+......|+.||-. .|-.+ .+++++.+||+|..+|.|+-. |||..|+||+|.+++
T Consensus 463 ymSEaqRsaLNAlLfR-TGdqS--------------------rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEE 519 (630)
T KOG0742|consen 463 YMSEAQRSALNALLFR-TGDQS--------------------RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEE 519 (630)
T ss_pred hhcHHHHHHHHHHHHH-hcccc--------------------cceEEEeccCCccchhHHHHh--hhhheeecCCCChHH
Confidence 2233344566777643 22222 679999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCC---c--------------------C----CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7780 238 KRRIFNIHTSRMTLA---E--------------------D----VNLQELIMAKDDLSGADIKAICTEAGLMALRERRMK 290 (317)
Q Consensus 238 r~~Il~~~l~~~~~~---~--------------------~----~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~ 290 (317)
|..|+..|+.++-.. + . .-..+.|..|+||||++|..|+--....+.-...-.
T Consensus 520 Rfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcv 599 (630)
T KOG0742|consen 520 RFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCV 599 (630)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchh
Confidence 999999998764211 0 0 114667889999999999999863322222333445
Q ss_pred cCHHHHHHHHHHHHh
Q psy7780 291 VTNEDFKKSKESVLY 305 (317)
Q Consensus 291 it~~d~~~al~~v~~ 305 (317)
++..-|.+.+...+.
T Consensus 600 Ld~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 600 LDEALFDERVDYKVQ 614 (630)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666666554443
|
|
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=190.42 Aligned_cols=206 Identities=22% Similarity=0.261 Sum_probs=167.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
|.+|++||+|||||. +++.+. -+++..++|+.+-........+.++.+|..|.+++|+||++|++|+|++..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s- 510 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS- 510 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC-
Confidence 378999999999998 777666 468899999999877777778899999999999999999999999999843
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
+..++........+..+++++-...... ...+.||++.+....|+|-|.+|++|+.++.+|.|
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~-----------------~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKR-----------------NRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHcc-----------------CcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 2233444555566667775544332221 14578999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh----cCCCcCHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE----RRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~----~~~~it~~d~~~al~~v~ 304 (317)
+..+|.+||+..+++...+ ...|++-++..|+||.+.|+..++.+|...|..+ +.+.+|.++|.++++...
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 9999999999998775532 3345666999999999999999999999888833 344899999999998765
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=177.39 Aligned_cols=201 Identities=43% Similarity=0.619 Sum_probs=179.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
..+++||||||||+ ++|++ +..++.+++++...+|.|+++..++.+|..|+..+|+++++||+|.+.+.+.. .
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~---~ 95 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS---D 95 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccc---c
Confidence 46799999999999 78888 77778899999999999999999999999999999999999999999999865 2
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......++..+++..+|++. . +.+++++.||++..+|+++++||||++.+.++.|+.+.+
T Consensus 96 ~~~~~~~v~~~l~~~~d~~~-~-------------------~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 96 QGEVERRVVAQLLALMDGLK-R-------------------GQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred ccchhhHHHHHHHHhccccc-C-------------------CceEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 22234567788888889887 3 338999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~~~ 306 (317)
.+|++.+...+....+.+...++..+.|++++++..+|.++.+.+.++. ...++.+|+.++++++...
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999999998888888899999999999999999999999999988875 4568999999999998653
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-19 Score=162.52 Aligned_cols=184 Identities=17% Similarity=0.232 Sum_probs=128.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC---C----ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---S----ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+.+|+||||||||+ ++|+.+ | .+++.++++++.+.|+|+++..++.+|+.|. ++||||||+|.+...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKP 137 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccC
Confidence 57999999999999 776654 2 3699999999999999999888888888764 479999999999754
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCccee
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGRIDR 226 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~ 226 (317)
+.. .....+.+..| +..|+... ++++||++++... .++|++++ ||+.
T Consensus 138 ~~~--~~~~~e~~~~L---~~~me~~~---------------------~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~ 189 (287)
T CHL00181 138 DNE--RDYGSEAIEIL---LQVMENQR---------------------DDLVVIFAGYKDRMDKFYESNPGLSS--RIAN 189 (287)
T ss_pred CCc--cchHHHHHHHH---HHHHhcCC---------------------CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCc
Confidence 321 12233444444 44444322 5677888876422 34699999 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh------CCCCC-HHHHHHHHHHHHHHHHHh----cCCCcCHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA------KDDLS-GADIKAICTEAGLMALRE----RRMKVTNE 294 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~------t~g~s-~~dl~~l~~~A~~~a~~~----~~~~it~~ 294 (317)
.|+|++|+.+++.+|++.++++.... .+.....+... .+.|. +++++++++.|......+ +...++.+
T Consensus 190 ~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~ 269 (287)
T CHL00181 190 HVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKA 269 (287)
T ss_pred eEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999999999999998765432 11112222221 23444 899999999887654433 23344555
Q ss_pred HH
Q psy7780 295 DF 296 (317)
Q Consensus 295 d~ 296 (317)
|+
T Consensus 270 ~l 271 (287)
T CHL00181 270 DL 271 (287)
T ss_pred HH
Confidence 54
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=157.75 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=125.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcC-------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT-------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~-------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
++.+|+||||||||+ ++|+++ ..++++++++++.++|+|+++..++++|+.|. ++||||||+|.|..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR 119 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc
Confidence 367899999999999 677653 24789999999999999999999999998774 47999999999963
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCcce
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGRID 225 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~ 225 (317)
.. ... .....+..++..++... .++++|++++..+ .++|++++ ||.
T Consensus 120 ~~---~~~---~~~~~i~~Ll~~~e~~~---------------------~~~~vila~~~~~~~~~~~~~p~L~s--Rf~ 170 (261)
T TIGR02881 120 GG---EKD---FGKEAIDTLVKGMEDNR---------------------NEFVLILAGYSDEMDYFLSLNPGLRS--RFP 170 (261)
T ss_pred CC---ccc---hHHHHHHHHHHHHhccC---------------------CCEEEEecCCcchhHHHHhcChHHHh--ccc
Confidence 21 111 11234556666666542 4566666654322 37899999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh---------CCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 226 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA---------KDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 226 ~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~---------t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
..|+||.++.+++.+|++.++...... ++..+..++.. ...-+++.+++++..|......+
T Consensus 171 ~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 171 ISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765433 12223333221 12246888999999887665543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-19 Score=182.12 Aligned_cols=192 Identities=21% Similarity=0.259 Sum_probs=143.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..+|+||||||||+ ++|+.+ +..++.++++.+. .+|.|+.+..++++|+.+.++.|+||||||+|
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih 284 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIH 284 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHH
Confidence 56789999999999 888876 7889999999988 57999999999999999988889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-----CCCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-----ETLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-----~~Ld~al~rp 221 (317)
.+++.... .+++...+..|...|.. +.+.+|++||.. ..+|+|+.|
T Consensus 285 ~l~~~g~~--~~~~~~~~~~L~~~l~~--------------------------g~i~~IgaTt~~e~~~~~~~d~al~r- 335 (731)
T TIGR02639 285 TIVGAGAT--SGGSMDASNLLKPALSS--------------------------GKLRCIGSTTYEEYKNHFEKDRALSR- 335 (731)
T ss_pred HHhccCCC--CCccHHHHHHHHHHHhC--------------------------CCeEEEEecCHHHHHHHhhhhHHHHH-
Confidence 99876532 22233345555544432 789999999974 358999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCC----CCC-cCCCHHHHHHhCCCCC-----HHHHHHHHHHHHHHHHHh----c
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLA-EDVNLQELIMAKDDLS-----GADIKAICTEAGLMALRE----R 287 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~t~g~s-----~~dl~~l~~~A~~~a~~~----~ 287 (317)
||. .|+++.|+.+++.+|++.....+ .+. .+..+..++..+..|- |.---.++.+|+.....+ .
T Consensus 336 -Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~ 413 (731)
T TIGR02639 336 -RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKK 413 (731)
T ss_pred -hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccccc
Confidence 997 79999999999999999765542 111 3334556666655543 444456777766533211 2
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 ~~~it~~d~~~al~~v~ 304 (317)
...|+.+|+.+++..+.
T Consensus 414 ~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 414 KANVSVKDIENVVAKMA 430 (731)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 34699999999988764
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=156.66 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=124.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC---C----ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---S----ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+.+|+||||||||+ ++|+.+ + .+|+.++++++..+|.|+++..++.+|+.|. +++|||||++.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~ 136 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRP 136 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccC
Confidence 78999999999999 555544 2 2799999999999999999888999998774 489999999999754
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--CCC---CCccccCCCccee
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR--IET---LDPALIRPGRIDR 226 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~--~~~---Ld~al~rpgRf~~ 226 (317)
+.. .....+.+. .++..|+... .+++||++++. .+. ++|++++ ||..
T Consensus 137 ~~~--~~~~~~~~~---~Ll~~le~~~---------------------~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~ 188 (284)
T TIGR02880 137 DNE--RDYGQEAIE---ILLQVMENQR---------------------DDLVVILAGYKDRMDSFFESNPGFSS--RVAH 188 (284)
T ss_pred CCc--cchHHHHHH---HHHHHHhcCC---------------------CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCc
Confidence 321 122333444 4444444321 56778888764 333 5899999 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhC------CC-CCHHHHHHHHHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK------DD-LSGADIKAICTEAGLMALR 285 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t------~g-~s~~dl~~l~~~A~~~a~~ 285 (317)
.|+||.++.+++.+|++.++++.... +......+.... +. -++++++++++.|......
T Consensus 189 ~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 189 HVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQAN 255 (284)
T ss_pred EEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875432 111122333221 22 2589999999988765543
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=159.73 Aligned_cols=175 Identities=23% Similarity=0.281 Sum_probs=124.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC----CceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~Ii~iDEiD~l~~~r~~ 154 (317)
+.+||||||||||| .+|+.++++|..+++.. .+-+.++++|+.|++.. ..|||+|||+.+...+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-- 120 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-- 120 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh--
Confidence 56799999999999 99999999999999854 56789999999996544 4799999999997654
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
|..|.-.++. +.|++|+|| |....|.+||++ |+ +++++.+
T Consensus 121 ---------QD~lLp~vE~--------------------------G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~ 162 (436)
T COG2256 121 ---------QDALLPHVEN--------------------------GTIILIGATTENPSFELNPALLS--RA-RVFELKP 162 (436)
T ss_pred ---------hhhhhhhhcC--------------------------CeEEEEeccCCCCCeeecHHHhh--hh-heeeeec
Confidence 3344444433 789999887 777889999999 98 4888999
Q ss_pred CCHHHHHHHHHHHhc--CCCCC------cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH
Q psy7780 233 PDEKTKRRIFNIHTS--RMTLA------EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-RMKVTNEDFKKSKESV 303 (317)
Q Consensus 233 P~~~~r~~Il~~~l~--~~~~~------~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-~~~it~~d~~~al~~v 303 (317)
.+.++..++++..+. ..++. ++...+.++..+.| |.+.+++..-+.+.... ...++.+++++++.+.
T Consensus 163 L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~ 238 (436)
T COG2256 163 LSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAALSAEPDEVLILELLEEILQRR 238 (436)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhh
Confidence 999999999988432 22222 12234556666555 66665553322222221 2244578887777765
Q ss_pred Hhhh
Q psy7780 304 LYRK 307 (317)
Q Consensus 304 ~~~~ 307 (317)
....
T Consensus 239 ~~~~ 242 (436)
T COG2256 239 SARF 242 (436)
T ss_pred hhcc
Confidence 5433
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=150.64 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=109.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.|||||||+|||| .+|++++.+|..++++.+ +....+..++....+ ..|||||||+.+...
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i------~k~~dl~~il~~l~~--~~ILFIDEIHRlnk~------- 116 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI------EKAGDLAAILTNLKE--GDILFIDEIHRLNKA------- 116 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------SCHHHHHHHHT--T--T-EEEECTCCC--HH-------
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhh------hhHHHHHHHHHhcCC--CcEEEEechhhccHH-------
Confidence 57999999999999 999999999999988654 223455556555543 479999999998544
Q ss_pred chhHHHHHHHHHHHHhc-----CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 159 GEREIQRTMLELLNQLD-----GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
.+..|...++... |..... + .....+ .++.+|+||++...|.++|+. ||.....+..+
T Consensus 117 ----~qe~LlpamEd~~idiiiG~g~~a---r-------~~~~~l-~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y 179 (233)
T PF05496_consen 117 ----QQEILLPAMEDGKIDIIIGKGPNA---R-------SIRINL-PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFY 179 (233)
T ss_dssp ----HHHHHHHHHHCSEEEEEBSSSSS----B-------EEEEE-----EEEEEESSGCCTSHCCCT--TSSEEEE----
T ss_pred ----HHHHHHHHhccCeEEEEecccccc---c-------eeeccC-CCceEeeeeccccccchhHHh--hcceecchhcC
Confidence 3555655555211 111000 0 000111 568999999999999999999 99988899999
Q ss_pred CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
+.++..+|++......++. .+....+||.++.| +|+-..++++++.
T Consensus 180 ~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 180 SEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 9999999999887776665 33346778888888 8998888888653
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-18 Score=174.27 Aligned_cols=192 Identities=26% Similarity=0.322 Sum_probs=144.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..||+||||||||+ ++|+.. ++.++.++.+.++ .+|.|+.+..++.+|..+.+..++||||||+|
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh 288 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIH 288 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHH
Confidence 56899999999999 666543 6778888888777 56889999999999999988889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+++.+.. ++++.+..+++..++.. +.+.+|++||.++ ..|++|.|
T Consensus 289 ~L~g~g~~--~~g~~d~~nlLkp~L~~--------------------------g~i~vIgATt~~E~~~~~~~D~AL~r- 339 (758)
T PRK11034 289 TIIGAGAA--SGGQVDAANLIKPLLSS--------------------------GKIRVIGSTTYQEFSNIFEKDRALAR- 339 (758)
T ss_pred HHhccCCC--CCcHHHHHHHHHHHHhC--------------------------CCeEEEecCChHHHHHHhhccHHHHh-
Confidence 99877532 23344455556655543 7899999999865 58999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHH-----HHHh-----CCCCCHHHHHHHHHHHHHHHH----Hhc
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQE-----LIMA-----KDDLSGADIKAICTEAGLMAL----RER 287 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~-----ia~~-----t~g~s~~dl~~l~~~A~~~a~----~~~ 287 (317)
||+ .|.++.|+.+++..||+.+..++....++.+.+ ++.. +..+-|.....++.+|+.... ..+
T Consensus 340 -RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~ 417 (758)
T PRK11034 340 -RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKR 417 (758)
T ss_pred -hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCccccc
Confidence 996 899999999999999998876655444444322 2222 334567788889998875431 223
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 ~~~it~~d~~~al~~v~ 304 (317)
+..|+.+|+.+.+.+..
T Consensus 418 ~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 418 KKTVNVADIESVVARIA 434 (758)
T ss_pred ccccChhhHHHHHHHHh
Confidence 45688888888776543
|
|
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-18 Score=169.90 Aligned_cols=145 Identities=22% Similarity=0.303 Sum_probs=119.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeecccccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
..|+||||+|||+ +||..+|..|++++.+.+.+ .|+|..+..+-+....+.-.+| +++|||+|.++.
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~ 519 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS 519 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC
Confidence 4589999999999 99999999999998766543 4999999999999999999888 999999999983
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEe
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEF 230 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~ 230 (317)
.- .++.. + .||+.+|.-++....+....+.+|+ .+|++|+|+|..+.||++|+. |++ .|++
T Consensus 520 g~--qGDPa-----s---ALLElLDPEQNanFlDHYLdVp~DL------SkVLFicTAN~idtIP~pLlD--RME-vIel 580 (906)
T KOG2004|consen 520 GH--QGDPA-----S---ALLELLDPEQNANFLDHYLDVPVDL------SKVLFICTANVIDTIPPPLLD--RME-VIEL 580 (906)
T ss_pred CC--CCChH-----H---HHHHhcChhhccchhhhccccccch------hheEEEEeccccccCChhhhh--hhh-eeec
Confidence 21 12222 2 5666677776665544444444555 899999999999999999999 996 8999
Q ss_pred CCCCHHHHHHHHHHHhc
Q psy7780 231 PLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 231 ~~P~~~~r~~Il~~~l~ 247 (317)
+-+..++..+|.+.|+-
T Consensus 581 sGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 581 SGYVAEEKVKIAERYLI 597 (906)
T ss_pred cCccHHHHHHHHHHhhh
Confidence 99999999999999974
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=156.18 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=136.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.+|+||||||||+ ++|++++..+..++++.+. ....+..++... ..++||||||+|.+....
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------ 118 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------ 118 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------
Confidence 67899999999999 9999999988887766432 223455555543 346899999999985321
Q ss_pred chhHHHHHHHHHHHHhcC--CCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQLDG--FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~--~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
+..+..+++.... +-....+ .......+ .++.+|++||++..++++|++ ||...+.|+.|+.+
T Consensus 119 -----~e~l~~~~e~~~~~~~l~~~~~-------~~~~~~~l-~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~ 183 (328)
T PRK00080 119 -----EEILYPAMEDFRLDIMIGKGPA-------ARSIRLDL-PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVE 183 (328)
T ss_pred -----HHHHHHHHHhcceeeeeccCcc-------ccceeecC-CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHH
Confidence 2233333332110 0000000 00001112 347899999999999999999 99989999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++.+|++......++. ++..+..+++.+.| +++.+..+++.+...|..++...|+.+++.++++.+
T Consensus 184 e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 184 ELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999887765544 33346788888887 678999999988888877666789999999999764
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=171.47 Aligned_cols=200 Identities=22% Similarity=0.271 Sum_probs=131.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh---------hhhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++|++++.+|++++++.+. ..|+|.....+.+.|..+..+.| ||||||||.+.
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~ 427 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIG 427 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcC
Confidence 47899999999999 9999999999999876542 35788888888899998877766 89999999998
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
+...+ ...++ |+..+|...... +..+........+++++|+|||+++.||++|++ ||+ .|+
T Consensus 428 ~~~~~-------~~~~a---Ll~~ld~~~~~~------f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~ 488 (775)
T TIGR00763 428 SSFRG-------DPASA---LLEVLDPEQNNA------FSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIE 488 (775)
T ss_pred CccCC-------CHHHH---HHHhcCHHhcCc------cccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEe
Confidence 54311 11233 444444211100 000000000111578999999999999999999 996 799
Q ss_pred eCCCCHHHHHHHHHHHhc-----CCCCC------cCCCHHHHHHh-CCCCCHHHHHH----HHHHHHHHHHHhcC-----
Q psy7780 230 FPLPDEKTKRRIFNIHTS-----RMTLA------EDVNLQELIMA-KDDLSGADIKA----ICTEAGLMALRERR----- 288 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~-----~~~~~------~~~~~~~ia~~-t~g~s~~dl~~----l~~~A~~~a~~~~~----- 288 (317)
|+.|+.+++.+|++.++. ...+. .+..+..+++. +..+..++|+. +|+.++...+..+.
T Consensus 489 ~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~ 568 (775)
T TIGR00763 489 LSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSE 568 (775)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCC
Confidence 999999999999998862 11221 22234555553 33445555554 55555443332221
Q ss_pred ---CCcCHHHHHHHHH
Q psy7780 289 ---MKVTNEDFKKSKE 301 (317)
Q Consensus 289 ---~~it~~d~~~al~ 301 (317)
..++.+++.+-+.
T Consensus 569 ~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 569 AESVVITPDNLKKYLG 584 (775)
T ss_pred cccccCCHHHHHHhcC
Confidence 3677777655543
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-17 Score=145.40 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=146.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
|+||+||||.|||| .+|+|+|..+-..++..+ +.+..+-.++.....+ .|+|||||+++.+.-
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l------eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~~v------ 119 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL------EKPGDLAAILTNLEEG--DVLFIDEIHRLSPAV------ 119 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc------cChhhHHHHHhcCCcC--CeEEEehhhhcChhH------
Confidence 88999999999999 999999999999988876 3355666677665555 799999999996542
Q ss_pred chhHHHHHHHHHHHHh--cCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQL--DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~l--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
..+|.-.++-+ |=.-+...+.+ ..+..+ .++.+|+||.+...|...|+. ||....++..++.+
T Consensus 120 -----EE~LYpaMEDf~lDI~IG~gp~Ar-------sv~ldL-ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~ 184 (332)
T COG2255 120 -----EEVLYPAMEDFRLDIIIGKGPAAR-------SIRLDL-PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVE 184 (332)
T ss_pred -----HHHhhhhhhheeEEEEEccCCccc-------eEeccC-CCeeEeeeccccccccchhHH--hcCCeeeeecCCHH
Confidence 33333333311 10000000000 011112 578999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
+..+|+++....+.+. .+....+||+++.| ||+--.+|+++..-+|.-++...|+.+-..+|++...
T Consensus 185 eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 185 ELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 9999999988777665 34456788988888 8999999999999999988888898888888887643
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-17 Score=149.15 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=131.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.+|+||||||||+ ++|++++..+..+.++.+.. ...+...+... ..+.+|||||++.+.+..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~------ 97 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPAV------ 97 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHhc--ccCCEEEEehHhhhCHHH------
Confidence 57899999999999 99999998887776554321 12233333322 346899999999985321
Q ss_pred chhHHHHHHHHHHHHhcCC--CcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQLDGF--DSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~--~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
+..+..+++..... -....+ .......+ .++.+|++||++..+++++++ ||...+.+++|+.+
T Consensus 98 -----~e~l~~~~~~~~~~~v~~~~~~-------~~~~~~~~-~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~ 162 (305)
T TIGR00635 98 -----EELLYPAMEDFRLDIVIGKGPS-------ARSVRLDL-PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVE 162 (305)
T ss_pred -----HHHhhHHHhhhheeeeeccCcc-------ccceeecC-CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHH
Confidence 22333333221100 000000 00000112 358899999999999999999 99889999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++.++++......... ++..++.+++.+.| .++.+.+++..+...|...+...++.+++.+++..+
T Consensus 163 e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 163 ELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9999999887654433 23346778888888 568888999988777766666779999999998873
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-17 Score=162.63 Aligned_cols=206 Identities=22% Similarity=0.305 Sum_probs=147.6
Q ss_pred echhhH-HHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 78 RVVGSE-LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 78 ~i~g~~-Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.+.||+ +|.||||+|||+ .||+.++..|++++.+.+.+ .|+|..+..|-+-...|...+| +++|||
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDE 425 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDE 425 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeec
Confidence 344454 589999999999 99999999999999877654 4999999999999999999998 999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRI 224 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf 224 (317)
||.++..-.+ +.. +.+|+-+|.-++....++...+.+|+ .+|++|+|+|+.+.||.+|+. |+
T Consensus 426 IDKm~ss~rG--DPa--------SALLEVLDPEQN~~F~DhYLev~yDL------S~VmFiaTANsl~tIP~PLlD--RM 487 (782)
T COG0466 426 IDKMGSSFRG--DPA--------SALLEVLDPEQNNTFSDHYLEVPYDL------SKVMFIATANSLDTIPAPLLD--RM 487 (782)
T ss_pred hhhccCCCCC--ChH--------HHHHhhcCHhhcCchhhccccCccch------hheEEEeecCccccCChHHhc--ce
Confidence 9999765322 111 25777778776665444444444444 899999999999999999999 99
Q ss_pred eeEEEeCCCCHHHHHHHHHHHhcC-----CCCC------cCCCHHHHHHh-C--CCCC--HHHHHHHHHHHHHHHHHhcC
Q psy7780 225 DRKIEFPLPDEKTKRRIFNIHTSR-----MTLA------EDVNLQELIMA-K--DDLS--GADIKAICTEAGLMALRERR 288 (317)
Q Consensus 225 ~~~I~~~~P~~~~r~~Il~~~l~~-----~~~~------~~~~~~~ia~~-t--~g~s--~~dl~~l~~~A~~~a~~~~~ 288 (317)
+ +|+++-++.++..+|.+.|+=. .++. .+..+..+.+. | .|.- -+.|..+|+.++..-+....
T Consensus 488 E-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~ 566 (782)
T COG0466 488 E-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKE 566 (782)
T ss_pred e-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 6 9999999999999999999632 2222 11223334433 1 1211 34566777776655544332
Q ss_pred C---CcCHHHHHHHHHHH
Q psy7780 289 M---KVTNEDFKKSKESV 303 (317)
Q Consensus 289 ~---~it~~d~~~al~~v 303 (317)
. .++..++.+-+-..
T Consensus 567 k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 567 KSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred ccceeeCHHHHHHHhCCc
Confidence 2 46666665554433
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-17 Score=161.00 Aligned_cols=213 Identities=21% Similarity=0.257 Sum_probs=139.4
Q ss_pred CCceEeechh------------------hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhh-------
Q psy7780 72 TSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSEL------- 113 (317)
Q Consensus 72 ~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l------- 113 (317)
++.+|+++.| |+||+||||||||+ ++++++ +.+|+.++|+..
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI 139 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc
Confidence 5566777666 78999999999999 554421 468999998642
Q ss_pred hhhhcCCchHHH----------------HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHh---
Q psy7780 114 IQKYLGDGPKLV----------------RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL--- 174 (317)
Q Consensus 114 ~~~~~g~~~~~l----------------~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--- 174 (317)
.+...|.....+ ...+. +....+|||||+|.+... .+..|..+++.-
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~-----------~q~~LL~~Le~~~~~ 205 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPV-----------QMNKLLKVLEDRKVF 205 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHH-----------HHHHHHHHHHhCeee
Confidence 111111100000 00111 222479999999998543 345555555431
Q ss_pred -cCCCcccccccchhhhcccccccCCCCeEEEEE-cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC
Q psy7780 175 -DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA-TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA 252 (317)
Q Consensus 175 -d~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t-TN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~ 252 (317)
+.-.....+...+.+.++.+....+.++.+|++ ||.|+.|+|++++ ||. .|+|++++.+++.+|++..+++..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~ 282 (531)
T TIGR02902 206 LDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGIN 282 (531)
T ss_pred eccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 110011111222333344444455666677655 5679999999999 995 78999999999999999998876544
Q ss_pred -cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 253 -EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 253 -~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++..++.++..+ .+++++.++++.|+..|..+++..|+.+|+++++..-
T Consensus 283 is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 283 LEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred cCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 223345555544 3899999999999999988888899999999998743
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=162.88 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=142.0
Q ss_pred CCceEeechh------------------hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhc
Q psy7780 72 TSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~ 118 (317)
++..++++.| ..+|+|+||||||+ .+|+.+ +..++.++.+.+. .+|.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 5567777777 45688999999999 777654 3678888888876 3688
Q ss_pred CCchHHHHHHHHHHHh-hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 119 GDGPKLVRELFRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
|+.+..++.+|+.++. ..++||||||++.+.+.++.. +......+|...|..
T Consensus 262 ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~n~Lkp~l~~------------------------ 314 (852)
T TIGR03345 262 GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGDAANLLKPALAR------------------------ 314 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---ccccHHHHhhHHhhC------------------------
Confidence 9999999999999975 457999999999998775321 122233344444432
Q ss_pred CCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC----C-cCCCHHHHHHhCCCC
Q psy7780 198 LPGDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL----A-EDVNLQELIMAKDDL 267 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~----~-~~~~~~~ia~~t~g~ 267 (317)
+.+.+|+||+..+ .+|+||.| ||. .|.++.|+.+++..||+.+.+.+.. . .+..+..++..+.+|
T Consensus 315 --G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 315 --GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred --CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 7899999998743 49999999 996 8999999999999998766544321 1 344466677776654
Q ss_pred -----CHHHHHHHHHHHHHHHH-HhcCCCcCHHHHHHHHHHH
Q psy7780 268 -----SGADIKAICTEAGLMAL-RERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 268 -----s~~dl~~l~~~A~~~a~-~~~~~~it~~d~~~al~~v 303 (317)
-|.-.-.++.+|+.... .........+++.+.+..+
T Consensus 390 i~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~ 431 (852)
T TIGR03345 390 IPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAAL 431 (852)
T ss_pred cccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 34455577888765443 3344455556665555443
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-16 Score=160.50 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=116.9
Q ss_pred CCceEeechh------------------hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhc
Q psy7780 72 TSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~ 118 (317)
++..++++.| ..+|+||||||||+ ++|..+ +.+++.++.+.++ .+|.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~ 252 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 252 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchh
Confidence 4556777777 45688999999999 777776 7899999999877 5688
Q ss_pred CCchHHHHHHHHHHHh-hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 119 GDGPKLVRELFRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
|+.+..++.+|+.+.. ..|+||||||++.+.+...+ .+......+|...+..
T Consensus 253 g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~lkp~l~~------------------------ 305 (857)
T PRK10865 253 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALAR------------------------ 305 (857)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHHhcchhhc------------------------
Confidence 9999999999998644 56899999999999876532 2223345555544432
Q ss_pred CCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC
Q psy7780 198 LPGDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT 250 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~ 250 (317)
+.+.+|+||+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+..++.
T Consensus 306 --g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 306 --GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred --CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 7899999999977 48999999 997 688999999999999988876543
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=144.36 Aligned_cols=170 Identities=23% Similarity=0.270 Sum_probs=121.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~ 154 (317)
+.+|+||||||||+ ++|+.++..|+.++++. .+...++.+++.+.. ....||||||+|.+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--- 107 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--- 107 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---
Confidence 56899999999999 99999999999998864 234566777777642 24589999999987432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
.+..|...++. +.+++|++| |....+++++++ || ..+.|++
T Consensus 108 --------~q~~LL~~le~--------------------------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ 150 (413)
T PRK13342 108 --------QQDALLPHVED--------------------------GTITLIGATTENPSFEVNPALLS--RA-QVFELKP 150 (413)
T ss_pred --------HHHHHHHHhhc--------------------------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCC
Confidence 23344444332 556777765 445689999999 99 6899999
Q ss_pred CCHHHHHHHHHHHhcCC--CC-C-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 233 PDEKTKRRIFNIHTSRM--TL-A-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 233 P~~~~r~~Il~~~l~~~--~~-~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
|+.++...+++..+... ++ . .+..+..+++.+.| .++.+.++++.+... ...|+.+++.+++....
T Consensus 151 ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 151 LSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhhhh
Confidence 99999999999876542 11 1 22235567777654 666666777665543 45689999988887653
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=147.16 Aligned_cols=188 Identities=17% Similarity=0.198 Sum_probs=127.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
|.+|||+||||||+ ++|+++ +..++++++.++...+..........-|..... .+.+|+|||++.+..++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER 228 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH
Confidence 57899999999999 888876 677999999988766543322111122322222 468999999999865431
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKI 228 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I 228 (317)
.+..+..+++.+- .. +..++|+++..|.. +++.+++ ||. ..+
T Consensus 229 ---------~~~~l~~~~n~l~---~~-------------------~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v 275 (450)
T PRK00149 229 ---------TQEEFFHTFNALH---EA-------------------GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTV 275 (450)
T ss_pred ---------HHHHHHHHHHHHH---HC-------------------CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeE
Confidence 1222333332221 11 33445555555555 6789999 996 589
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
++.+|+.++|..|++......++. ++..++.||....| +.++|..+++.....+...+ ..||.+.+.++++.+..
T Consensus 276 ~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 276 DIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLLA 351 (450)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 999999999999999998754433 33346777777666 78888888887766665554 45899999999988753
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=137.72 Aligned_cols=192 Identities=21% Similarity=0.268 Sum_probs=127.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---------ceEEEEechhhhh----------hhc--CC--------chHHHHHH
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---------ATFLRVVGSELIQ----------KYL--GD--------GPKLVREL 128 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---------~~~~~v~~s~l~~----------~~~--g~--------~~~~l~~~ 128 (317)
+..+++||||||||+ ++++++. +.+++++|....+ ... |. ....++.+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 120 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRL 120 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Confidence 367899999999999 5655432 6788898854321 111 11 12234555
Q ss_pred HHHHHh-hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE
Q psy7780 129 FRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA 207 (317)
Q Consensus 129 f~~a~~-~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t 207 (317)
++.... ..+.||+|||+|.+.... +..+.+++...+..... ..++.+|++
T Consensus 121 ~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~------------------~~~v~lI~i 171 (365)
T TIGR02928 121 YKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLD------------------NAKVGVIGI 171 (365)
T ss_pred HHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCC------------------CCeEEEEEE
Confidence 655543 446899999999997221 12344444331111100 056889999
Q ss_pred cCCCC---CCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCC---CCCcCCCHHH---HHHhCCCCCHHHHHHHHH
Q psy7780 208 TNRIE---TLDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRM---TLAEDVNLQE---LIMAKDDLSGADIKAICT 277 (317)
Q Consensus 208 TN~~~---~Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~---~~~~~~~~~~---ia~~t~g~s~~dl~~l~~ 277 (317)
+|.++ .+++.+.+ ||. ..++|++++.++..+|++..++.. ..-.+..++. ++..+.| ..+.+..+|+
T Consensus 172 ~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~ 248 (365)
T TIGR02928 172 SNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLR 248 (365)
T ss_pred ECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 99886 58888888 774 679999999999999999987521 1111111222 3344455 4666677899
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 278 EAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 278 ~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
.|+..|..++...|+.+|+.+|+..+.
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 999999998889999999999988774
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-15 Score=143.17 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=125.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCch-HHHHHHHHHHHhhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGP-KLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~-~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r 152 (317)
|.+|||+||+|||+ ++++++ +..++++++.++...+..... ..+..+.+..+ .+.+|+|||+|.+.+++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH
Confidence 56899999999999 777776 678999999887765432211 11222222222 35799999999986543
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eE
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RK 227 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~ 227 (317)
..+..+..+++.+- .. +..+||+++..|.. +++.+++ ||. ..
T Consensus 216 ---------~~~~~l~~~~n~~~---~~-------------------~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~ 262 (405)
T TIGR00362 216 ---------RTQEEFFHTFNALH---EN-------------------GKQIVLTSDRPPKELPGLEERLRS--RFEWGLV 262 (405)
T ss_pred ---------HHHHHHHHHHHHHH---HC-------------------CCCEEEecCCCHHHHhhhhhhhhh--hccCCeE
Confidence 11223333333321 11 33345555555554 6688998 996 47
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+++++|+.++|..|++..+...++. ++..++.+|....+ +.+++..+++.....|...+ ..||.+.+.+++.....
T Consensus 263 v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 263 VDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhcc
Confidence 9999999999999999998765544 34446777877665 78888888887766665444 55888888888887643
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.9e-15 Score=152.51 Aligned_cols=170 Identities=19% Similarity=0.225 Sum_probs=124.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhh-CCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEi 145 (317)
..+|+||||||||+ ++|..+ +.+++.++.+.++ .+|.|+.++.++.+|+.+... .|+||||||+
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEi 275 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDEL 275 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccH
Confidence 44678999999999 667664 7889999988886 568999999999999998764 5899999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIR 220 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~r 220 (317)
+.+.+..... +.....+.|...+. + +.+.+|++||..+ .+|+++.|
T Consensus 276 h~l~~~g~~~---~~~d~~~~Lk~~l~-------~-------------------g~i~~IgaTt~~e~r~~~~~d~al~r 326 (852)
T TIGR03346 276 HTLVGAGKAE---GAMDAGNMLKPALA-------R-------------------GELHCIGATTLDEYRKYIEKDAALER 326 (852)
T ss_pred HHhhcCCCCc---chhHHHHHhchhhh-------c-------------------CceEEEEeCcHHHHHHHhhcCHHHHh
Confidence 9998654221 12223333333322 2 7899999999864 48999999
Q ss_pred CCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCC-----CHHHHHHhCCC-----CCHHHHHHHHHHHHHHH
Q psy7780 221 PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV-----NLQELIMAKDD-----LSGADIKAICTEAGLMA 283 (317)
Q Consensus 221 pgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~-----~~~~ia~~t~g-----~s~~dl~~l~~~A~~~a 283 (317)
||. .|.++.|+.+++..|++.+..++.....+ .+..++..+.+ +-|.---.++.+|+..+
T Consensus 327 --Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 327 --RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred --cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHH
Confidence 996 68999999999999999887665543332 34455555544 34555556777776544
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-15 Score=153.04 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=125.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..+|+||||||||+ ++|..+ +.+++.++.+.++ .+|.|+.+..++.+|+.++...++||||||+|
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih 281 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVH 281 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHH
Confidence 55799999999999 777765 4789999999887 47899999999999999988889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+.+..+.. +.......|...|.. +.+.+|++||..+ ..|+++.+
T Consensus 282 ~l~~~g~~~---g~~~~a~lLkp~l~r--------------------------g~l~~IgaTt~~ey~~~ie~D~aL~r- 331 (821)
T CHL00095 282 TLIGAGAAE---GAIDAANILKPALAR--------------------------GELQCIGATTLDEYRKHIEKDPALER- 331 (821)
T ss_pred HHhcCCCCC---CcccHHHHhHHHHhC--------------------------CCcEEEEeCCHHHHHHHHhcCHHHHh-
Confidence 998765322 222344555444432 7899999999864 48999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcC----CCCC-cCCCHHHHHHhCCCCC-----HHHHHHHHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSR----MTLA-EDVNLQELIMAKDDLS-----GADIKAICTEAGLMA 283 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~----~~~~-~~~~~~~ia~~t~g~s-----~~dl~~l~~~A~~~a 283 (317)
||. .|.++.|+.++...|++..... ..+. ++..+..++..+.+|. |.-.-.++.+|+...
T Consensus 332 -Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 332 -RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred -cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHH
Confidence 997 6899999999999998765332 1221 2333556666665543 444556777766543
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=136.36 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=128.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhh----------hhhhcCC-------c-hHHHHHHHHHHHh-
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSEL----------IQKYLGD-------G-PKLVRELFRVAEE- 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l----------~~~~~g~-------~-~~~l~~~f~~a~~- 134 (317)
..+++||||||||+ .+++++ +..+++++|... .....+. + ...+..+++....
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999 666655 578999998532 2222221 1 2233333333333
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-- 212 (317)
..+.||+|||+|.+.... + ...+..++..++.... .++.+|+++|..+
T Consensus 137 ~~~~viviDE~d~l~~~~-----~-----~~~l~~l~~~~~~~~~--------------------~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 137 DRVLIVALDDINYLFEKE-----G-----NDVLYSLLRAHEEYPG--------------------ARIGVIGISSDLTFL 186 (394)
T ss_pred CCEEEEEECCHhHhhccC-----C-----chHHHHHHHhhhccCC--------------------CeEEEEEEECCcchh
Confidence 346899999999997221 0 1245555555443321 3678899988764
Q ss_pred -CCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCCC---CCcCCCHHHHHHhCCCC--CHHHHHHHHHHHHHHHHH
Q psy7780 213 -TLDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRMT---LAEDVNLQELIMAKDDL--SGADIKAICTEAGLMALR 285 (317)
Q Consensus 213 -~Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~~---~~~~~~~~~ia~~t~g~--s~~dl~~l~~~A~~~a~~ 285 (317)
.+++.+.+ ||. ..|.|++++.++..+|++..+...- .-++..++.+++.+.+. ..+.+..+|..|+..|..
T Consensus 187 ~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 187 YILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 47777777 663 5789999999999999998875321 11233355566665332 345566888999999998
Q ss_pred hcCCCcCHHHHHHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~ 304 (317)
++...|+.+|+.+|+.++.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 8889999999999999873
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.9e-15 Score=134.20 Aligned_cols=185 Identities=23% Similarity=0.305 Sum_probs=131.7
Q ss_pred CCceEeechh---------------------hHHHhhhcCCCchh---hhhhcCCce---EEEEechhhhhhhcCCchHH
Q psy7780 72 TSATFLRVVG---------------------SELIQKYLGDGPKL---AVANQTSAT---FLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 72 ~~~~~~~i~g---------------------~~Ll~G~pGtGKT~---aiA~~~~~~---~~~v~~s~l~~~~~g~~~~~ 124 (317)
++.+.+|..| ..+|+||||||||+ .+|.....+ |+.+++.. ..-..
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~d 205 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTND 205 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHH
Confidence 6678888887 66899999999999 777766655 88888754 44678
Q ss_pred HHHHHHHHHhh-----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 125 VRELFRVAEEH-----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 125 l~~~f~~a~~~-----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
+|.+|+.++.. ...|||||||+.+...++ .++.-..+.
T Consensus 206 vR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~VE~-------------------------- 248 (554)
T KOG2028|consen 206 VRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPHVEN-------------------------- 248 (554)
T ss_pred HHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccceecc--------------------------
Confidence 99999999753 358999999999865542 222222211
Q ss_pred CCeEEEEEc--CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc---CC-----CCC------cCCCHHHHHHh
Q psy7780 200 GDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS---RM-----TLA------EDVNLQELIMA 263 (317)
Q Consensus 200 ~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~---~~-----~~~------~~~~~~~ia~~ 263 (317)
+.|.+|++| |....|..||++ || +++.+.....++-..||.+-.. +- ++. .+.-++.++..
T Consensus 249 G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 789999887 667789999999 99 4777888888998888877432 10 111 12235667888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHH
Q psy7780 264 KDDLSGADIKAICTEAGLMALRER---RMKVTNEDFKKSKESV 303 (317)
Q Consensus 264 t~g~s~~dl~~l~~~A~~~a~~~~---~~~it~~d~~~al~~v 303 (317)
++|-..+.|..|--.+.+.+.|.+ +..++.+|+.+.+.+-
T Consensus 326 sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 326 SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 888666666555444456666655 5689999999888753
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=140.25 Aligned_cols=169 Identities=16% Similarity=0.173 Sum_probs=117.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++. |+.+++.. ..+...+|++.+.+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~ 115 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKF 115 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHh
Confidence 37999999999999 888888763 44444321 1223456666665542
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+.. ..++.||..++... .++++|++|+.
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~--------------~A~NALLKtLEEPp---------------------~~viFILaTte 160 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTD--------------QSFNALLKTLEEPP---------------------AHIVFILATTE 160 (484)
T ss_pred hhhcCCCEEEEEechhhcCH--------------HHHHHHHHHhhcCC---------------------CceEEEeecCC
Confidence 2346999999999842 23344555554321 67889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|++++++ ||. .+.|..++.++..+.++..+.+.++. ++..+..|++.+.| +.++..+++..+...+ ..
T Consensus 161 ~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~~~----~~ 232 (484)
T PRK14956 161 FHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIVFT----DS 232 (484)
T ss_pred hhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHHhC----CC
Confidence 9999999999 995 78999999988888888887665543 34457778888887 7888888887655332 23
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++.+.
T Consensus 233 ~it~~~V~~~ 242 (484)
T PRK14956 233 KLTGVKIRKM 242 (484)
T ss_pred CcCHHHHHHH
Confidence 4677666543
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=139.71 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=116.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
..||+||||||||+ ++|+.+++ .++.++++. ..+-..+|.+.+.+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~ 111 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGY 111 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhh
Confidence 36899999999999 88888765 455665532 1223456776666543
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...||+|||+|.+.. ..+..|+..++... +.+++|++|+.
T Consensus 112 ~p~~~~~kVvIIDE~h~Lt~--------------~a~~~LLk~LE~p~---------------------~~vv~Ilattn 156 (472)
T PRK14962 112 RPMEGKYKVYIIDEVHMLTK--------------EAFNALLKTLEEPP---------------------SHVVFVLATTN 156 (472)
T ss_pred ChhcCCeEEEEEEChHHhHH--------------HHHHHHHHHHHhCC---------------------CcEEEEEEeCC
Confidence 2 235999999998842 12334455544322 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+++++++ ||. .+.|.+|+.++...+++......++. ++..+..|++.+.| +.+++.+.+..+...+ ..
T Consensus 157 ~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~~~----~~ 228 (472)
T PRK14962 157 LEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVWKFS----EG 228 (472)
T ss_pred hHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc----CC
Confidence 8899999999 995 89999999999999998887654332 23346777877655 5556666665443321 23
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.|+.+++.+++.
T Consensus 229 ~It~e~V~~~l~ 240 (472)
T PRK14962 229 KITLETVHEALG 240 (472)
T ss_pred CCCHHHHHHHHc
Confidence 488888887764
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=141.24 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=116.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh------hCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE------HAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~------~~P~Ii~iDEiD~l~~~r 152 (317)
+.||+||||||||+ ++|++++.+++.+++++... ...++.+...+.. ..+.+|+|||+|.+....
T Consensus 41 ~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~ 114 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE 114 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc
Confidence 67899999999999 99999999999999987432 2234444433332 246799999999986521
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEeC
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFP 231 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~-al~rpgRf~~~I~~~ 231 (317)
+...... ++..++. .+..+|+++|.+..+++ .+++ |+ ..|.|+
T Consensus 115 -------d~~~~~a---L~~~l~~-----------------------~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~ 158 (482)
T PRK04195 115 -------DRGGARA---ILELIKK-----------------------AKQPIILTANDPYDPSLRELRN--AC-LMIEFK 158 (482)
T ss_pred -------chhHHHH---HHHHHHc-----------------------CCCCEEEeccCccccchhhHhc--cc-eEEEec
Confidence 1111223 3333332 23347788999998887 6776 66 489999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 299 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~a 299 (317)
.|+.++...+++..+.+.++. ++..+..|+..+. +|++.+++.... +..+...++.+++...
T Consensus 159 ~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~--~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 159 RLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQA--IAEGYGKLTLEDVKTL 221 (482)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHH--HhcCCCCCcHHHHHHh
Confidence 999999999999888665443 3344677777654 477777775544 3344556777777544
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=146.72 Aligned_cols=200 Identities=17% Similarity=0.237 Sum_probs=129.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
..+|+||||||||+ .+|..++.+|++++.+...+ .|.|..+..+...+..+....| ||||||+|.+.
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~ 429 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMS 429 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcc
Confidence 46899999999999 99999999999998765432 4777777777777777665555 89999999997
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
....+ .... .|++.+|.-.+..-.+ +|.+. .+.+ ++|++|+|||.. .|+++|++ ||+ .|.
T Consensus 430 ~~~~g-------~~~~---aLlevld~~~~~~~~d----~~~~~-~~dl-s~v~~i~TaN~~-~i~~aLl~--R~~-ii~ 489 (784)
T PRK10787 430 SDMRG-------DPAS---ALLEVLDPEQNVAFSD----HYLEV-DYDL-SDVMFVATSNSM-NIPAPLLD--RME-VIR 489 (784)
T ss_pred cccCC-------CHHH---HHHHHhccccEEEEec----ccccc-cccC-CceEEEEcCCCC-CCCHHHhc--cee-eee
Confidence 54311 1123 4444455322211111 11111 1222 789999999987 59999999 996 799
Q ss_pred eCCCCHHHHHHHHHHHhcC-----CCCC------cCCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHh----c---CCC
Q psy7780 230 FPLPDEKTKRRIFNIHTSR-----MTLA------EDVNLQELIMA-KDDLSGADIKAICTEAGLMALRE----R---RMK 290 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~-----~~~~------~~~~~~~ia~~-t~g~s~~dl~~l~~~A~~~a~~~----~---~~~ 290 (317)
|+.++.++..+|.+.++.. ..+. .+..+..+++. +..+-.|.|+++++..+..++.+ + ...
T Consensus 490 ~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~ 569 (784)
T PRK10787 490 LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIE 569 (784)
T ss_pred cCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceee
Confidence 9999999999999998741 1111 11123444432 34444566666655544433322 2 236
Q ss_pred cCHHHHHHHHHH
Q psy7780 291 VTNEDFKKSKES 302 (317)
Q Consensus 291 it~~d~~~al~~ 302 (317)
|+.+++.+-+-.
T Consensus 570 v~~~~~~~~lg~ 581 (784)
T PRK10787 570 INGDNLHDYLGV 581 (784)
T ss_pred ecHHHHHHHhCC
Confidence 888887766653
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-14 Score=132.40 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=116.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+++.+. ++.+++++ ......++++.+.+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~ 113 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYY 113 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhc
Confidence 46899999999999 888887642 23332221 1223456777665542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. .....+|..++... ..+.+|++|+.
T Consensus 114 ~p~~~~~kviIIDEa~~l~~--------------~a~naLLk~lEe~~---------------------~~~~fIl~t~~ 158 (363)
T PRK14961 114 SPSKSRFKVYLIDEVHMLSR--------------HSFNALLKTLEEPP---------------------QHIKFILATTD 158 (363)
T ss_pred CcccCCceEEEEEChhhcCH--------------HHHHHHHHHHhcCC---------------------CCeEEEEEcCC
Confidence 2 235999999998732 12233444444322 55778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+++++ |+ ..++|++|+.++..++++..+++.+.. ++..+..++..+.| +++++.+++..+... +..
T Consensus 159 ~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~----~~~ 230 (363)
T PRK14961 159 VEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINL----GKG 230 (363)
T ss_pred hHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999999998 88 589999999999999999887665432 33346667777776 788888888766533 356
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.++.+++.+++.
T Consensus 231 ~It~~~v~~~l~ 242 (363)
T PRK14961 231 NINIKNVTDMLG 242 (363)
T ss_pred CCCHHHHHHHHC
Confidence 688888877553
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-14 Score=142.68 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=110.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+|++|||||+ ++|+.+++ .+++++.++ ..+...++++.+.+..
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~ 113 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVY 113 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHh
Confidence 46899999999999 78887765 244444332 1233457777776542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+... ..+.|...|++ .. .++.+|++||.
T Consensus 114 ~P~~gr~KVIIIDEah~LT~~-----------A~NALLKtLEE---PP---------------------~~v~FILaTtd 158 (830)
T PRK07003 114 APVDARFKVYMIDEVHMLTNH-----------AFNAMLKTLEE---PP---------------------PHVKFILATTD 158 (830)
T ss_pred ccccCCceEEEEeChhhCCHH-----------HHHHHHHHHHh---cC---------------------CCeEEEEEECC
Confidence 2 2469999999998421 13334444443 21 57889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
++.|.+.|++ || .++.|..++.++..+.|+..+.+.++. ++..+..|++.+.| +.++..+++..+..
T Consensus 159 ~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 159 PQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred hhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999 99 589999999999999998887665443 33446777888887 67887788776653
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-14 Score=137.22 Aligned_cols=173 Identities=16% Similarity=0.224 Sum_probs=122.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce----------------------------EEEEechhhhhhhcCCchHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT----------------------------FLRVVGSELIQKYLGDGPKLVRELFR 130 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~----------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~ 130 (317)
.+||+||||||||+ ++|+.+++. ++.+++. ...+...++++++
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie 118 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIE 118 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHH
Confidence 58999999999999 888887652 2222221 1123567888888
Q ss_pred HHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEE
Q psy7780 131 VAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206 (317)
Q Consensus 131 ~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~ 206 (317)
.+... ...|++|||+|.+.. ..++.|+..++... ..+++|+
T Consensus 119 ~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~naLLk~LEepp---------------------~~~vfI~ 163 (507)
T PRK06645 119 SAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNALLKTLEEPP---------------------PHIIFIF 163 (507)
T ss_pred HHHhccccCCcEEEEEEChhhcCH--------------HHHHHHHHHHhhcC---------------------CCEEEEE
Confidence 77533 235999999998832 22334555444321 5678888
Q ss_pred EcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 207 tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|+.++.+++++++ |+ ..++|..++.++...+++..+++.+.. ++..+..++..+.| +.+++.+++..+...+..
T Consensus 164 aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~~ 239 (507)
T PRK06645 164 ATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASMSAK 239 (507)
T ss_pred EeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhcc
Confidence 88899999999999 98 479999999999999999998765543 22346778888777 899999999887665432
Q ss_pred hcCCCcCHHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKSK 300 (317)
Q Consensus 286 ~~~~~it~~d~~~al 300 (317)
. ...||.+++.+.+
T Consensus 240 ~-~~~It~~~V~~ll 253 (507)
T PRK06645 240 S-DNIISPQVINQML 253 (507)
T ss_pred C-CCCcCHHHHHHHH
Confidence 1 2357777776554
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-14 Score=144.82 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=117.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh-----hCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-----HAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~-----~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|+||||||||+ ++|+.++.+|+.++++.- +.+.+++.+..+.. ....+|||||+|.+....
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q- 125 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ- 125 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH-
Confidence 56899999999999 999999999999987631 12344555554422 235699999999884321
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFP 231 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~ 231 (317)
+..|...++. +.+++|++| |....+++++++ |+. .+.|+
T Consensus 126 ----------QdaLL~~lE~--------------------------g~IiLI~aTTenp~~~l~~aL~S--R~~-v~~l~ 166 (725)
T PRK13341 126 ----------QDALLPWVEN--------------------------GTITLIGATTENPYFEVNKALVS--RSR-LFRLK 166 (725)
T ss_pred ----------HHHHHHHhcC--------------------------ceEEEEEecCCChHhhhhhHhhc--ccc-ceecC
Confidence 3333333322 567777766 334578999999 874 79999
Q ss_pred CCCHHHHHHHHHHHhcC-------CCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc--CCCcCHHHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSR-------MTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER--RMKVTNEDFKKSKE 301 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~-------~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~--~~~it~~d~~~al~ 301 (317)
+++.+++..+++..+.. ..+. ++..+..+++.+.| +.+.+.++++.|...+.... ...|+.+++.+++.
T Consensus 167 pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 167 SLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 99999999999988762 1121 22335667777654 66777777777664332222 22488888888877
Q ss_pred HHH
Q psy7780 302 SVL 304 (317)
Q Consensus 302 ~v~ 304 (317)
+..
T Consensus 246 ~~~ 248 (725)
T PRK13341 246 QRA 248 (725)
T ss_pred Hhh
Confidence 643
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-14 Score=126.74 Aligned_cols=198 Identities=20% Similarity=0.254 Sum_probs=121.6
Q ss_pred chhhHHHhhhcCCCchh---hhhhcCCceEEEEech------hhhhhhcCCchHHHHHH--------------------H
Q psy7780 79 VVGSELIQKYLGDGPKL---AVANQTSATFLRVVGS------ELIQKYLGDGPKLVREL--------------------F 129 (317)
Q Consensus 79 i~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s------~l~~~~~g~~~~~l~~~--------------------f 129 (317)
.+.|+||+|+||||||+ ++|+.+|.+|+.++|. +++..+.|.....+..- +
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 34588999999999999 9999999999999774 45444443322211111 1
Q ss_pred HHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 130 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 130 ~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
-.|.. .+.+++|||++.+- .+.+..|..+|++ +.-...+.. ..........++.||+|+|
T Consensus 100 ~~A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~--~~~~i~~~~------~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEE--GVLELPGKR------GTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcC--CeEEccCCC------CCCceEecCCCCEEEEeeC
Confidence 11222 24799999999863 2345566666543 110000000 0001112235788999999
Q ss_pred CCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHH---HHHh------CCCCCHHHHHHH
Q psy7780 210 RIE-----TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQE---LIMA------KDDLSGADIKAI 275 (317)
Q Consensus 210 ~~~-----~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~---ia~~------t~g~s~~dl~~l 275 (317)
... .+++++++ || ..++++.|+.++-.+|++.++. .... ..+. ++.. ....+.+..-.+
T Consensus 160 ~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~~r~~i~~ 232 (262)
T TIGR02640 160 PVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSGLRASLMI 232 (262)
T ss_pred CccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCcHHHHHHH
Confidence 863 57999999 99 5899999999999999998762 2211 1111 2111 112344444444
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 276 ~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
++. .+....+..++.+||.+.+..|+.+
T Consensus 233 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 233 AEV---ATQQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred HHH---HHHcCCCCCCCcHHHHHHHHHHhcc
Confidence 443 3333557889999999999998865
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-14 Score=142.71 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=117.7
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCc-------------------------
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSA------------------------- 103 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~------------------------- 103 (317)
.++.+|+|+.| .+||+|++|||||+ ++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 36667777777 46999999999999 78887766
Q ss_pred ----eEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 104 ----TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 104 ----~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
.+++++.++ ..+-..+|++.+.+.. ....|++|||+|.+.. ...+.||..|+
T Consensus 90 G~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------~AaNALLKTLE 149 (700)
T PRK12323 90 GRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------HAFNAMLKTLE 149 (700)
T ss_pred CCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------HHHHHHHHhhc
Confidence 233443321 1234556777666543 2246999999999842 23345555555
Q ss_pred CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-
Q psy7780 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED- 254 (317)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~- 254 (317)
.-. .++++|++||.++.|.+.|++ || ..+.|..++.++..+.++..+.+.++..+
T Consensus 150 EPP---------------------~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~ 205 (700)
T PRK12323 150 EPP---------------------EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEV 205 (700)
T ss_pred cCC---------------------CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCH
Confidence 432 678899999999999999999 99 58999999999999998887765444322
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 255 VNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 255 ~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
..+..|++.+.| ++++..+++..+..
T Consensus 206 eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 206 NALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 235667777777 78888888876553
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=125.04 Aligned_cols=175 Identities=17% Similarity=0.129 Sum_probs=109.8
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSN 156 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~ 156 (317)
.+|+||||||||+ |+|+++ +....+++...... ...++++..+ +..+|+|||++.+.+.+
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~---- 107 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGNE---- 107 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCCh----
Confidence 4789999999998 888775 23444444432111 1112333332 34799999999886432
Q ss_pred CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC---ccccCCCcc--eeEEEeC
Q psy7780 157 SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD---PALIRPGRI--DRKIEFP 231 (317)
Q Consensus 157 ~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld---~al~rpgRf--~~~I~~~ 231 (317)
+.+..+..+++.+..- . ..+++++++..|..++ +.|.+ |+ ...+.++
T Consensus 108 -----~~~~~l~~l~n~~~~~--~-------------------~~illits~~~p~~l~~~~~~L~s--Rl~~g~~~~l~ 159 (229)
T PRK06893 108 -----EWELAIFDLFNRIKEQ--G-------------------KTLLLISADCSPHALSIKLPDLAS--RLTWGEIYQLN 159 (229)
T ss_pred -----HHHHHHHHHHHHHHHc--C-------------------CcEEEEeCCCChHHccccchhHHH--HHhcCCeeeCC
Confidence 1223444555443211 0 2344555556677665 88998 65 4788999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
.|+.++|.+|++......++. ++..+..++++..| +.+.+..+++.-...+..++ ..||...+++++.
T Consensus 160 ~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~v~~~L~ 228 (229)
T PRK06893 160 DLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQ-RKLTIPFVKEILG 228 (229)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHhc
Confidence 999999999999876543333 33335667777665 67777777776543444434 4699999887763
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-14 Score=135.60 Aligned_cols=188 Identities=15% Similarity=0.193 Sum_probs=123.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r 152 (317)
|.+|||+||||||+ ++|+++ +..++++++.+++..+.... ...+.. |.......+.+|+|||++.+.++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH
Confidence 56899999999999 888875 56889999988776543211 112222 332223357899999999886542
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eE
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RK 227 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~ 227 (317)
. .+..+..+++.+. .. +..+||++.+.|.. +.+.+.+ ||. ..
T Consensus 211 -----~----~q~elf~~~n~l~---~~-------------------~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~ 257 (440)
T PRK14088 211 -----G----VQTELFHTFNELH---DS-------------------GKQIVICSDREPQKLSEFQDRLVS--RFQMGLV 257 (440)
T ss_pred -----H----HHHHHHHHHHHHH---Hc-------------------CCeEEEECCCCHHHHHHHHHHHhh--HHhcCce
Confidence 1 1222222332221 11 34445555556665 5577888 884 57
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+.+|+.+.|..|++......++. ++..++.|++...| +.++|..++..-...+...+ ..+|.+...++++.++.
T Consensus 258 v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 258 AKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhc
Confidence 8899999999999999987644333 23336677777665 78888888887655555444 45888888888887653
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=139.36 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=120.7
Q ss_pred HHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhh----------hcCC-------chHHHHHHHHHHH
Q psy7780 84 LIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQK----------YLGD-------GPKLVRELFRVAE 133 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~----------~~g~-------~~~~l~~~f~~a~ 133 (317)
+++|+||||||+ .+.+++ .+.+++|+|..+... ..+. +...+..+|....
T Consensus 785 YIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~ 864 (1164)
T PTZ00112 785 YISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK 864 (1164)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh
Confidence 489999999998 444333 267899999543221 1111 2345667777653
Q ss_pred h--hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-
Q psy7780 134 E--HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR- 210 (317)
Q Consensus 134 ~--~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~- 210 (317)
. ...+||+|||||.|..+. +.+|..|++.... .. ..+.||+++|.
T Consensus 865 k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~~--s~-------------------SKLiLIGISNdl 912 (1164)
T PTZ00112 865 KDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPTK--IN-------------------SKLVLIAISNTM 912 (1164)
T ss_pred cccccceEEEeehHhhhCccH-----------HHHHHHHHHHhhc--cC-------------------CeEEEEEecCch
Confidence 2 335799999999997532 3456666654321 11 56889999987
Q ss_pred --CCCCCccccCCCccee-EEEeCCCCHHHHHHHHHHHhcCCC-CCcCCCHHHHHHhCCCCCHHHHH---HHHHHHHHHH
Q psy7780 211 --IETLDPALIRPGRIDR-KIEFPLPDEKTKRRIFNIHTSRMT-LAEDVNLQELIMAKDDLSGADIK---AICTEAGLMA 283 (317)
Q Consensus 211 --~~~Ld~al~rpgRf~~-~I~~~~P~~~~r~~Il~~~l~~~~-~~~~~~~~~ia~~t~g~s~~dl~---~l~~~A~~~a 283 (317)
++.|+|.+++ ||.. +|.|++++.+++.+||+..+.... .-.+..++.+|+..... .+|++ .+|+.|+..
T Consensus 913 DLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGDARKALDILRrAgEi- 988 (1164)
T PTZ00112 913 DLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGDIRKALQICRKAFEN- 988 (1164)
T ss_pred hcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHhh-
Confidence 5667888888 7753 589999999999999999887532 11222345555543322 23544 556666654
Q ss_pred HHhcCCCcCHHHHHHHHHHHHh
Q psy7780 284 LRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 284 ~~~~~~~it~~d~~~al~~v~~ 305 (317)
++...|+.+|+.+|++++..
T Consensus 989 --kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 989 --KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred --cCCCccCHHHHHHHHHHHHh
Confidence 34458999999999987643
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-14 Score=131.25 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=106.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhhcCCchHHHHHHHHHH-Hh------hCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVA-EE------HAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a-~~------~~P~Ii~iDEiD 146 (317)
+.||+||||||||+ ++|+++. ..++.+++++..+ ...++...... .. ..+.|++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 57899999999999 8888862 3467777765322 12344333221 11 235699999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+... .+..|...++. .. ....+|.+||.++.+.++|++ |+.
T Consensus 110 ~lt~~-----------aq~aL~~~lE~---~~---------------------~~t~~il~~n~~~~i~~~L~S--Rc~- 151 (319)
T PLN03025 110 SMTSG-----------AQQALRRTMEI---YS---------------------NTTRFALACNTSSKIIEPIQS--RCA- 151 (319)
T ss_pred hcCHH-----------HHHHHHHHHhc---cc---------------------CCceEEEEeCCccccchhHHH--hhh-
Confidence 98432 23444444432 21 334577888999999999999 884
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 298 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~ 298 (317)
.++|++|+.++....++...++.++. ++..+..++..+.| +.+.+.+.++.+. .+...|+.+++.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~ 218 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQATH-----SGFGFVNQENVFK 218 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-----hcCCCCCHHHHHH
Confidence 89999999999999998887654443 33446777777554 4444444444211 1233566666644
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.9e-14 Score=137.26 Aligned_cols=181 Identities=19% Similarity=0.161 Sum_probs=126.2
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCce------------------------
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSAT------------------------ 104 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~~------------------------ 104 (317)
.++.+|+|+.| .+||+||||||||+ ++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 46677888877 46999999999999 888887653
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 105 FLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 105 ~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
++++++++ ..+-..+|++.+.+.. ....|++|||+|.+... .++.||..|+...
T Consensus 90 ~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--------------a~naLLk~LEepp-- 147 (509)
T PRK14958 90 LFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--------------SFNALLKTLEEPP-- 147 (509)
T ss_pred EEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH--------------HHHHHHHHHhccC--
Confidence 56665442 1234457777665542 12359999999998432 2334444444332
Q ss_pred cccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHH
Q psy7780 181 VQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQE 259 (317)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ 259 (317)
.++.+|++|+.++.+.+.+++ |+ ..++|..++.++....++..+++.++. .+..+..
T Consensus 148 -------------------~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ 205 (509)
T PRK14958 148 -------------------SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDL 205 (509)
T ss_pred -------------------CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 567888888999999999999 98 478999999988888888877665543 2334667
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 260 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 260 ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+++.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 206 ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 7777766 888999998876533 23457777666543
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-14 Score=138.58 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=118.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++ .++.+++++- .+...+|++.+.+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y 112 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPY 112 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhh
Confidence 56999999999999 78888765 3455554321 234467777665532
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+... ..+.|+..++... +++.+|++|+.
T Consensus 113 ~P~~gk~KV~IIDEVh~LS~~--------------A~NALLKtLEEPP---------------------~~v~FILaTtd 157 (702)
T PRK14960 113 APTQGRFKVYLIDEVHMLSTH--------------SFNALLKTLEEPP---------------------EHVKFLFATTD 157 (702)
T ss_pred hhhcCCcEEEEEechHhcCHH--------------HHHHHHHHHhcCC---------------------CCcEEEEEECC
Confidence 23469999999988422 2233444444321 56778888899
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+++.+++ |+. ++.|.+++.++..+.++..+.+.++. .+..+..|++.+.| +.+++.+++..+... +..
T Consensus 158 ~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIay----g~g 229 (702)
T PRK14960 158 PQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIAY----GQG 229 (702)
T ss_pred hHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999999998 994 89999999999999998887765544 33346778888776 888888888765532 345
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++...
T Consensus 230 ~IT~edV~~l 239 (702)
T PRK14960 230 AVHHQDVKEM 239 (702)
T ss_pred CcCHHHHHHH
Confidence 6777777554
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=137.80 Aligned_cols=180 Identities=21% Similarity=0.224 Sum_probs=122.8
Q ss_pred CCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCce------------------------E
Q psy7780 72 TSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSAT------------------------F 105 (317)
Q Consensus 72 ~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~ 105 (317)
++.+|++|.| .+||+|+||||||+ ++|+.+++. +
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 6667777777 36899999999999 888888763 3
Q ss_pred EEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCccc
Q psy7780 106 LRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRV 181 (317)
Q Consensus 106 ~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 181 (317)
+.+++++ ..+-..+|++.+.+.. ...-|++|||+|.+... ..+.||..|+...
T Consensus 91 ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--------------a~NALLKtLEEPp--- 147 (647)
T PRK07994 91 IEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLEEPP--- 147 (647)
T ss_pred eeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH--------------HHHHHHHHHHcCC---
Confidence 3343321 1123456666655532 22459999999988422 2334444444322
Q ss_pred ccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHH
Q psy7780 182 QNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQEL 260 (317)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~i 260 (317)
+++.+|++|+.+..|.+.+++ || ..++|..++.++....++..+...++. .+..+..|
T Consensus 148 ------------------~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~I 206 (647)
T PRK07994 148 ------------------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLL 206 (647)
T ss_pred ------------------CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 678888889999999999999 98 689999999999999998887654443 23345667
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 261 IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 261 a~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+..+.| +.++..+++..|... +...|+.+++.+.+
T Consensus 207 a~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 207 ARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 777777 788888888765432 23346666655443
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=133.49 Aligned_cols=187 Identities=15% Similarity=0.164 Sum_probs=126.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|||++|+|||. |+|+++ +..++++++.+++..+.........+.|..-. ..+.+|+||||+.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH-
Confidence 57899999999998 888875 57899999999887665433222223344322 236899999999986543
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC----CCCCccccCCCcce--eE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI----ETLDPALIRPGRID--RK 227 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~----~~Ld~al~rpgRf~--~~ 227 (317)
.. +..|..+++.+-.- +.- +|.|+|++ ..+++.|++ ||. ..
T Consensus 394 ----~t----qeeLF~l~N~l~e~----------------------gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLv 440 (617)
T PRK14086 394 ----ST----QEEFFHTFNTLHNA----------------------NKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLI 440 (617)
T ss_pred ----HH----HHHHHHHHHHHHhc----------------------CCC-EEEecCCChHhhhhccHHHHh--hhhcCce
Confidence 11 22333344333211 222 55577663 357889999 984 66
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+..|+.+.|.+||+......++. ++.-++.|+.+..+ +.++|..++.+-...+...+ ..|+.+.+++.++.++.
T Consensus 441 v~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 7999999999999999988765554 33335666666554 67888888877655555444 55888888888877654
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=121.63 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=116.4
Q ss_pred hhhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
.++++++|+||||||+ ++++++ +.++++++++++.... ..+++.... +.+|+|||+|.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh-
Confidence 3478999999999999 666554 5789999998876432 233333322 3699999999884321
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC-CCCCCC---ccccCCCcc--eeE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN-RIETLD---PALIRPGRI--DRK 227 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN-~~~~Ld---~al~rpgRf--~~~ 227 (317)
+.+..+..+++.+... +.. +|.|++ .+..++ +.+.+ || ...
T Consensus 107 --------~~~~~L~~~l~~~~~~----------------------~~~-iIits~~~~~~~~~~~~~L~~--r~~~~~~ 153 (226)
T TIGR03420 107 --------EWQEALFHLYNRVREA----------------------GGR-LLIAGRAAPAQLPLRLPDLRT--RLAWGLV 153 (226)
T ss_pred --------HHHHHHHHHHHHHHHc----------------------CCe-EEEECCCChHHCCcccHHHHH--HHhcCee
Confidence 1123444444433221 223 455554 444432 67887 77 478
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+.+|+|+.+++..+++.+..+..+. ++..+..++.... -+.+++.++++++...+.+++ ..|+.+.+.+.+
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 9999999999999999876544333 2333566777544 489999999998776555544 579999887765
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=125.85 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=110.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhh-------------cCC-------chHHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKY-------------LGD-------GPKLVRELFRVAE 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~-------------~g~-------~~~~l~~~f~~a~ 133 (317)
+.+|+||||||||+ ++|+++. .+++.++++++.... .+. ....++.+.....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 57899999999999 7777763 357888887764321 111 1223333333332
Q ss_pred hhC-----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 134 EHA-----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 134 ~~~-----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
... +.+|+|||+|.+... .+..|..+++. .. ....+|++|
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-----------~~~~L~~~le~---~~---------------------~~~~~Il~~ 162 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-----------AQQALRRIMEQ---YS---------------------RTCRFIIAT 162 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-----------HHHHHHHHHHh---cc---------------------CCCeEEEEe
Confidence 322 459999999987321 23344444443 21 234466677
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
+.+..+.+++++ |+ ..+.|++|+.++...+++..+.+.++. ++..+..++..+. +|++.+++.....+ . .
T Consensus 163 ~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~----gdlr~l~~~l~~~~-~-~ 233 (337)
T PRK12402 163 RQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG----GDLRKAILTLQTAA-L-A 233 (337)
T ss_pred CChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHH-H-c
Confidence 777788888988 87 478999999999999999887765543 3344666777653 35555555443333 2 2
Q ss_pred CCCcCHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKE 301 (317)
Q Consensus 288 ~~~it~~d~~~al~ 301 (317)
...||.+++.+++.
T Consensus 234 ~~~It~~~v~~~~~ 247 (337)
T PRK12402 234 AGEITMEAAYEALG 247 (337)
T ss_pred CCCCCHHHHHHHhC
Confidence 34688888877654
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=132.39 Aligned_cols=170 Identities=12% Similarity=0.166 Sum_probs=122.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------------------------ceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------------------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------------------------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
++||+||||+|||+ ++|..++ ..++++++++ ..+-..+|++.+.+..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~ 110 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCY 110 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHh
Confidence 58999999999999 6776543 3456666643 1234568888777653
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ..++.|+..++... .++.+|++|+.
T Consensus 111 ~P~~~~~KVvIIDEah~Ls~--------------~A~NaLLK~LEePp---------------------~~v~fIlatte 155 (491)
T PRK14964 111 LPISSKFKVYIIDEVHMLSN--------------SAFNALLKTLEEPA---------------------PHVKFILATTE 155 (491)
T ss_pred ccccCCceEEEEeChHhCCH--------------HHHHHHHHHHhCCC---------------------CCeEEEEEeCC
Confidence 2 235999999998832 23445555555432 56788888889
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++.+++ |+. .+.|..++.++..+.++..+.+.+.. ++..+..+++.+.| +.+++.+++..+...+ ..
T Consensus 156 ~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y~----~~ 227 (491)
T PRK14964 156 VKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIYS----NN 227 (491)
T ss_pred hHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CC
Confidence 9999999999 994 79999999999999998887765544 33446777888766 8888888888776543 23
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.||.+++.+.+
T Consensus 228 ~It~e~V~~ll 238 (491)
T PRK14964 228 KISEKSVRDLL 238 (491)
T ss_pred CCCHHHHHHHH
Confidence 67888776653
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-13 Score=133.36 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=118.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|||||+ .+|+.+.+ +++.+++++ +.+...++++.+.+..
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~ 113 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKY 113 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhh
Confidence 47999999999998 66666543 445555432 2445678888887653
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ..++.|+..++... .++++|++|+.
T Consensus 114 ~p~~~~~kViIIDE~~~Lt~--------------~a~naLLKtLEepp---------------------~~~ifIlatt~ 158 (559)
T PRK05563 114 APSEAKYKVYIIDEVHMLST--------------GAFNALLKTLEEPP---------------------AHVIFILATTE 158 (559)
T ss_pred CcccCCeEEEEEECcccCCH--------------HHHHHHHHHhcCCC---------------------CCeEEEEEeCC
Confidence 2 235999999998832 23445555554432 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|++.+++ |+. .+.|+.|+.++...+++..+++.++. ++..+..++..+.| +.+++.+++..+...+ ..
T Consensus 159 ~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~~~----~~ 230 (559)
T PRK05563 159 PHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAISFG----DG 230 (559)
T ss_pred hhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cC
Confidence 9999999999 995 78999999999999999888765543 23346667877776 8888888888765542 34
Q ss_pred CcCHHHHHH
Q psy7780 290 KVTNEDFKK 298 (317)
Q Consensus 290 ~it~~d~~~ 298 (317)
.|+.+|+.+
T Consensus 231 ~It~~~V~~ 239 (559)
T PRK05563 231 KVTYEDALE 239 (559)
T ss_pred CCCHHHHHH
Confidence 567666544
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-13 Score=131.19 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=115.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCc-----------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh--
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA-----------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE-- 134 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~-----------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~-- 134 (317)
+||+||||||||+ ++|+.+.+ .++.+++++ ..+...++++.+.+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p 112 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAP 112 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhcc
Confidence 5999999999999 77777753 245555431 1234456666555543
Q ss_pred --hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC
Q psy7780 135 --HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212 (317)
Q Consensus 135 --~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~ 212 (317)
..+.||+|||+|.+.. ..+..++..++... .++++|++||.++
T Consensus 113 ~~~~~kVVIIDEad~ls~--------------~a~naLLk~LEep~---------------------~~t~~Il~t~~~~ 157 (504)
T PRK14963 113 LRGGRKVYILDEAHMMSK--------------SAFNALLKTLEEPP---------------------EHVIFILATTEPE 157 (504)
T ss_pred ccCCCeEEEEECccccCH--------------HHHHHHHHHHHhCC---------------------CCEEEEEEcCChh
Confidence 2356999999986621 23445566555432 4577888889999
Q ss_pred CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCc
Q psy7780 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKV 291 (317)
Q Consensus 213 ~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~i 291 (317)
.+++++++ |+. .++|+.|+.++....++..+.+.++. ++..+..++..+.| +.+++.++++.+... ...|
T Consensus 158 kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~~~-----~~~I 228 (504)
T PRK14963 158 KMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLLAL-----GTPV 228 (504)
T ss_pred hCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----CCCC
Confidence 99999999 985 79999999999999999887765543 23346667777666 667777777755322 3367
Q ss_pred CHHHHHHHH
Q psy7780 292 TNEDFKKSK 300 (317)
Q Consensus 292 t~~d~~~al 300 (317)
|.+++.+.+
T Consensus 229 t~~~V~~~l 237 (504)
T PRK14963 229 TRKQVEEAL 237 (504)
T ss_pred CHHHHHHHH
Confidence 877776653
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=135.53 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=119.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+++++. ++.+++++ +.+...++++++.+..
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~ 113 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQY 113 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHh
Confidence 47999999999999 788876553 22333221 2334568888776542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ..++.||..|+... +.+.+|++||.
T Consensus 114 ~P~~gk~KVIIIDEad~Ls~--------------~A~NALLKtLEEPp---------------------~~v~fILaTtd 158 (709)
T PRK08691 114 APTAGKYKVYIIDEVHMLSK--------------SAFNAMLKTLEEPP---------------------EHVKFILATTD 158 (709)
T ss_pred hhhhCCcEEEEEECccccCH--------------HHHHHHHHHHHhCC---------------------CCcEEEEEeCC
Confidence 2 236999999997632 12334555554322 56778889999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+.+.+++ || ..+.|+.++.++....++..+.+.++. ++..+..|++.+.| +.+++.+++..+... +..
T Consensus 159 ~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqaia~----g~g 230 (709)
T PRK08691 159 PHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAIAL----GSG 230 (709)
T ss_pred ccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999999998 99 578999999999999999888765544 23346778877766 888999998876654 234
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.|+.+++...+.
T Consensus 231 ~It~e~V~~lLG 242 (709)
T PRK08691 231 KVAENDVRQMIG 242 (709)
T ss_pred CcCHHHHHHHHc
Confidence 577777666543
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-13 Score=137.71 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=107.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceE------------------------EEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATF------------------------LRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~------------------------~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++.- +.+++++ ..+...+|.+.+.+..
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~ 113 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQY 113 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHh
Confidence 35899999999999 8888887641 1122110 0223456666665542
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+.. ..++.||..|+... +++.+|++|+.
T Consensus 114 ~P~~gk~KViIIDEAh~LT~--------------eAqNALLKtLEEPP---------------------~~vrFILaTTe 158 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHMLSR--------------SSFNALLKTLEEPP---------------------EHVKFLLATTD 158 (944)
T ss_pred hhhcCCcEEEEEechHhcCH--------------HHHHHHHHHHhccC---------------------CCeEEEEECCC
Confidence 2235999999999832 23444555554432 56788888999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
+..|.+.|++ || .++.|.+++.++..+.|+..+...++. .+..+..|++.+.| ++|++.++|..|.
T Consensus 159 ~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 159 PQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred chhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999 99 589999999999999888877654333 22346677777777 7888888887665
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-13 Score=129.58 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=118.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
|.+|||+||+|||+ ++|+++ +..++++++.++...+.......-...|.... ..+.+|+|||++.+.++.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~--- 218 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG--- 218 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---
Confidence 56899999999999 778765 67889999887765432211111112244332 245799999999886432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CC---CCCccccCCCcce--eEEE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IE---TLDPALIRPGRID--RKIE 229 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~---~Ld~al~rpgRf~--~~I~ 229 (317)
....++..+++.+... +.. +|.|+|. |. .+++.|++ ||. ..+.
T Consensus 219 --~~qeelf~l~N~l~~~--------------------------~k~-IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~ 267 (445)
T PRK12422 219 --ATQEEFFHTFNSLHTE--------------------------GKL-IVISSTCAPQDLKAMEERLIS--RFEWGIAIP 267 (445)
T ss_pred --hhHHHHHHHHHHHHHC--------------------------CCc-EEEecCCCHHHHhhhHHHHHh--hhcCCeEEe
Confidence 1122333333333221 333 5555544 43 47789999 995 7899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHh-cCCCcCHHHHHHHHHHHHh
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL-MALRE-RRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~-~a~~~-~~~~it~~d~~~al~~v~~ 305 (317)
+++|+.++|..|++......++. ++..++.++....+ +.+++...++..+. .|... ....++.++++++++.+..
T Consensus 268 l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 99999999999999988765543 22234556666554 56677766665532 12221 2356899999999887654
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-13 Score=125.24 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=86.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHH-hhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE-EHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~-~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
+.||+||||+|||+ ++|++.+.+++.+++++ .. .......+........ ...+.+|+|||+|.+...
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------ 115 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------ 115 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------
Confidence 56679999999999 89999999999999876 11 1111111222111111 124689999999987321
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
+.+..+..+++. .. .++.+|++||.++.+++++++ ||. .+.|+.|+.++
T Consensus 116 ----~~~~~L~~~le~---~~---------------------~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~ 164 (316)
T PHA02544 116 ----DAQRHLRSFMEA---YS---------------------KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEE 164 (316)
T ss_pred ----HHHHHHHHHHHh---cC---------------------CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHH
Confidence 123444455443 21 456788999999999999999 995 78999999999
Q ss_pred HHHHHHHHh
Q psy7780 238 KRRIFNIHT 246 (317)
Q Consensus 238 r~~Il~~~l 246 (317)
+.++++.++
T Consensus 165 ~~~il~~~~ 173 (316)
T PHA02544 165 QIEMMKQMI 173 (316)
T ss_pred HHHHHHHHH
Confidence 998876553
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.3e-13 Score=124.59 Aligned_cols=170 Identities=17% Similarity=0.205 Sum_probs=115.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+ .++.+++.. ..+...++++++.+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 111 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKY 111 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhc
Confidence 46899999999999 66666532 244444431 1234467788887654
Q ss_pred hC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 HA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.. ..||+|||+|.+.. .....++..++... .++++|++||+
T Consensus 112 ~p~~~~~~vviidea~~l~~--------------~~~~~Ll~~le~~~---------------------~~~~lIl~~~~ 156 (355)
T TIGR02397 112 APSSGKYKVYIIDEVHMLSK--------------SAFNALLKTLEEPP---------------------EHVVFILATTE 156 (355)
T ss_pred CcccCCceEEEEeChhhcCH--------------HHHHHHHHHHhCCc---------------------cceeEEEEeCC
Confidence 32 35999999998732 12345555554422 55778888899
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+++++ |+. .++|++|+.++..++++.++++.+.. ++..+..++..+.| +++.+.+.++.+...+ ..
T Consensus 157 ~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~~----~~ 228 (355)
T TIGR02397 157 PHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISFG----NG 228 (355)
T ss_pred HHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhhc----CC
Confidence 9999999999 985 78999999999999999888765543 22345566777655 6777777776655442 23
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+|+.+++
T Consensus 229 ~it~~~v~~~~ 239 (355)
T TIGR02397 229 NITYEDVNELL 239 (355)
T ss_pred CCCHHHHHHHh
Confidence 47877776554
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-13 Score=131.91 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=116.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----------------------------eEEEEechhhhhhhcCCchHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----------------------------TFLRVVGSELIQKYLGDGPKLVRELF 129 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f 129 (317)
.+||+||+|||||+ ++|+.+++ .++.+++++ ..+-..+|++.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli 113 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLL 113 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHH
Confidence 45899999999999 88877765 233333321 12234677777
Q ss_pred HHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 130 RVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 130 ~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+.... -.|++|||+|.+... .++.||..++... +++.+|
T Consensus 114 ~~~~~~p~~g~~KV~IIDEvh~Ls~~--------------a~NaLLKtLEEPP---------------------~~~~fI 158 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMIDEVHMLTNT--------------AFNAMLKTLEEPP---------------------EYLKFV 158 (618)
T ss_pred HHHHhCcccCCceEEEEEChhhCCHH--------------HHHHHHHhcccCC---------------------CCeEEE
Confidence 7654321 249999999998432 2334555544322 567788
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
++|+.+..+.+.+++ |+ ..++|..++.++..+.++..+.+.++. ++..+..|++.+.| +.+++.+++..+...
T Consensus 159 L~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~-- 232 (618)
T PRK14951 159 LATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF-- 232 (618)
T ss_pred EEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--
Confidence 888889999999999 98 589999999999999998887665544 23346777887777 788888888765544
Q ss_pred HhcCCCcCHHHHHHHH
Q psy7780 285 RERRMKVTNEDFKKSK 300 (317)
Q Consensus 285 ~~~~~~it~~d~~~al 300 (317)
+...|+.+++.+.+
T Consensus 233 --~~~~It~~~V~~~L 246 (618)
T PRK14951 233 --GSGQLQEAAVRQML 246 (618)
T ss_pred --cCCCcCHHHHHHHH
Confidence 23457766665543
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-13 Score=131.06 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=117.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+++. ++.++++. ..+...+|++.+.+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~ 113 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQY 113 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhh
Confidence 46899999999999 888877652 23333221 1234567787777643
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ...+.||..++... +.+.+|++|+.
T Consensus 114 ~p~~~~~kVvIIDEad~ls~--------------~a~naLLK~LEepp---------------------~~~~fIL~t~d 158 (527)
T PRK14969 114 APTRGRFKVYIIDEVHMLSK--------------SAFNAMLKTLEEPP---------------------EHVKFILATTD 158 (527)
T ss_pred CcccCCceEEEEcCcccCCH--------------HHHHHHHHHHhCCC---------------------CCEEEEEEeCC
Confidence 2 235999999998742 12334555554432 56788888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+.+++ |+ ..++|..++.++..+.++..+.+.++. .+..+..+++.+.| +.+++.+++..|... +..
T Consensus 159 ~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai~~----~~~ 230 (527)
T PRK14969 159 PQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAIAY----GGG 230 (527)
T ss_pred hhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999989998 98 589999999999998888877654443 22335666777665 788888888876543 345
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.|+.+++.+.+.
T Consensus 231 ~I~~~~v~~~~~ 242 (527)
T PRK14969 231 TVNESEVRAMLG 242 (527)
T ss_pred CcCHHHHHHHHC
Confidence 677777766543
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-13 Score=120.38 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=103.0
Q ss_pred ccCCCceEeechh------------------hHHHhhhcCCCchh---hhhhcCCc------eEEEEechhhhhhhcCCc
Q psy7780 69 ANQTSATFLRVVG------------------SELIQKYLGDGPKL---AVANQTSA------TFLRVVGSELIQKYLGDG 121 (317)
Q Consensus 69 ~~~~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~~~------~~~~v~~s~l~~~~~g~~ 121 (317)
++.++-+|+++.| ++|||||||||||+ +.|.++.. -+.+.+.|+-.+..++
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv-- 105 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV-- 105 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch--
Confidence 3446677888777 67999999999999 88888765 2233344443322211
Q ss_pred hHHHHHHHHHHHhhC---------C-ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhc
Q psy7780 122 PKLVRELFRVAEEHA---------P-SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYS 191 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~---------P-~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~ 191 (317)
...++ -|+...... | -||+|||+|.+... .+.+| ..-|+.+.
T Consensus 106 r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-----------aq~aL---rr~mE~~s------------- 157 (346)
T KOG0989|consen 106 REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-----------AQAAL---RRTMEDFS------------- 157 (346)
T ss_pred hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH-----------HHHHH---HHHHhccc-------------
Confidence 11111 233332211 2 59999999988532 23444 44445433
Q ss_pred ccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCC
Q psy7780 192 SLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 266 (317)
Q Consensus 192 ~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g 266 (317)
..+.+|..||+++.|++.+.+ |+. ++.|+....+.....|+....+.++. ++..+..|+..++|
T Consensus 158 --------~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 158 --------RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred --------cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 568899999999999999999 996 78888888877777777776665554 33346667777655
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=129.81 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=112.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+.+ .++.+++..- .+...++++.+.+..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~ 113 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQY 113 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHh
Confidence 36899999999999 77877654 3444443211 122345666665542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+... ..+.||..++... +.+.+|++|+.
T Consensus 114 ~p~~g~~kViIIDEa~~ls~~--------------a~naLLK~LEepp---------------------~~v~fIL~Ttd 158 (546)
T PRK14957 114 MPSQGRYKVYLIDEVHMLSKQ--------------SFNALLKTLEEPP---------------------EYVKFILATTD 158 (546)
T ss_pred hhhcCCcEEEEEechhhccHH--------------HHHHHHHHHhcCC---------------------CCceEEEEECC
Confidence 2 2459999999987421 2234444444322 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+.+.+++ |+ ..++|..++.++....++..+.+.++. ++..+..++..+.| +.+++.+++..+...+ ..
T Consensus 159 ~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnlLek~i~~~----~~ 230 (546)
T PRK14957 159 YHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSLLDQAISFC----GG 230 (546)
T ss_pred hhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cC
Confidence 9999999999 98 589999999999988888877665443 33345667777655 7788888887665432 14
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++.++
T Consensus 231 ~It~~~V~~~ 240 (546)
T PRK14957 231 ELKQAQIKQM 240 (546)
T ss_pred CCCHHHHHHH
Confidence 5777776654
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=116.42 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=109.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.+|+||||||||+ ++|+++ +..+.+++....... ..++++.... -.+|+|||++.+..+.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~--- 113 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE--- 113 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH---
Confidence 56799999999998 666654 345566665543221 1122222222 2589999999885432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc-CCCCC---CCccccCCCcce--eEEE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT-NRIET---LDPALIRPGRID--RKIE 229 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT-N~~~~---Ld~al~rpgRf~--~~I~ 229 (317)
. .+..+..+++.+-. . ++..+|+|+ +.|.. +.|.|++ |+. ..+.
T Consensus 114 --~----~~~~lf~l~n~~~e---~-------------------g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~ 163 (235)
T PRK08084 114 --L----WEMAIFDLYNRILE---S-------------------GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYK 163 (235)
T ss_pred --H----HHHHHHHHHHHHHH---c-------------------CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceee
Confidence 1 12233333333211 1 333344455 55555 5799999 995 7899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+.+|+.+++.++++......++. ++.-++.++++.+| +.+.+..+++.....++.++ ..||.+.+++++.
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~k~~l~ 234 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITAQ-RKLTIPFVKEILK 234 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 99999999999998865443333 23346667777766 78888888887543444433 4599988887753
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=124.96 Aligned_cols=192 Identities=21% Similarity=0.293 Sum_probs=119.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
+++||+||||||||+ ++|..++.+|+.++++.+.. .|+|+. +..+..++..+ .+..++||||||||.+..+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 478999999999999 99999999999999998764 688875 34455555432 3456799999999999877
Q ss_pred ccCCC---CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC----------------
Q psy7780 152 RYDSN---SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---------------- 212 (317)
Q Consensus 152 r~~~~---~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---------------- 212 (317)
+.+.. +-+...+++.|.++| ++-...........+.. .+.++|.|+|-..
T Consensus 189 ~~~~~~~~d~s~~~vQ~~LL~~L---eg~~~~v~~~gg~~~~~--------~~~~~i~t~nilfi~~Gaf~g~~~~~~~r 257 (412)
T PRK05342 189 SENPSITRDVSGEGVQQALLKIL---EGTVASVPPQGGRKHPQ--------QEFIQVDTTNILFICGGAFDGLEKIIKQR 257 (412)
T ss_pred cCCCCcCCCcccHHHHHHHHHHH---hcCeEEeCCCCCcCcCC--------CCeEEeccCCceeeecccccCcHHHHHHH
Confidence 43211 111224566666665 43211100000000000 1233333333300
Q ss_pred ------------------------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHH----HhcC----
Q psy7780 213 ------------------------------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTSR---- 248 (317)
Q Consensus 213 ------------------------------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~~---- 248 (317)
.+.|+++. |++.++.|.+.+.++..+|+.. .+++
T Consensus 258 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~ 335 (412)
T PRK05342 258 LGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKL 335 (412)
T ss_pred HhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 13566666 9999999999999999999973 2221
Q ss_pred -----CCCC-cCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q psy7780 249 -----MTLA-EDVNLQELIMA--KDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 249 -----~~~~-~~~~~~~ia~~--t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+.+. ++..++.|++. ..++-.+.|+.+++........
T Consensus 336 l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 336 FEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred HHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 1111 22335667765 4456678888888876655544
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=123.42 Aligned_cols=199 Identities=25% Similarity=0.248 Sum_probs=128.3
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh--hhcCCchHHHH------------HHHHHHHhhCCceEee
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ--KYLGDGPKLVR------------ELFRVAEEHAPSIVFI 142 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~--~~~g~~~~~l~------------~~f~~a~~~~P~Ii~i 142 (317)
+||.||.|+||||||+ ++|..++.+|+++.|+.-+. ...|...-..+ .+|...+ +|+|+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 4489999999999999 99999999999999975332 12222211111 0111111 39999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc-ccCCCCeEEEEEcC-----CCCCCCc
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL-IYLPGDVKVIMATN-----RIETLDP 216 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~-~~~~~~v~vI~tTN-----~~~~Ld~ 216 (317)
|||+... .+++..|.+.+++.. ++..... ...+..++||+|+| ....|++
T Consensus 119 DEInra~-----------p~~q~aLl~~l~e~~-------------vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~e 174 (329)
T COG0714 119 DEINRAP-----------PEVQNALLEALEERQ-------------VTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPE 174 (329)
T ss_pred eccccCC-----------HHHHHHHHHHHhCcE-------------EEECCcCCcCCCCCCEEEEccCccccCCCcCCCH
Confidence 9998753 335666666666522 2233334 56678899999999 5566999
Q ss_pred cccCCCcceeEEEeCCC-CHHHHHHHHHHHhcCC------CCCcCCCH-----------------------HHHHHhC--
Q psy7780 217 ALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTSRM------TLAEDVNL-----------------------QELIMAK-- 264 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~~~------~~~~~~~~-----------------------~~ia~~t-- 264 (317)
|+++ ||...+++++| +.++...++....... ....-+.. ..+...+
T Consensus 175 A~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (329)
T COG0714 175 ALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALRE 252 (329)
T ss_pred HHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhcc
Confidence 9999 99889999999 5555555555443311 00000000 1111111
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 265 -----DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 265 -----~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
.|.+++...++...+...|...++..+..+|+.........++.
T Consensus 253 ~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~~~ 301 (329)
T COG0714 253 APDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAHRL 301 (329)
T ss_pred ccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhhhh
Confidence 23467777777777777777788888999998888877776554
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=129.97 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=109.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHH-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAE- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~- 133 (317)
.+||+||||||||+ ++|+.+.+. ++.+++..- .+-..++.+.+.+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~ 113 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGY 113 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHh
Confidence 57899999999999 888887653 444443210 11223444333332
Q ss_pred ---hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 134 ---EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 134 ---~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.....||+|||+|.+... ..+.|+..++... .++++|++||.
T Consensus 114 ~p~~g~~kVIIIDEad~Lt~~--------------a~naLLk~LEEP~---------------------~~~ifILaTt~ 158 (624)
T PRK14959 114 APMEGRYKVFIIDEAHMLTRE--------------AFNALLKTLEEPP---------------------ARVTFVLATTE 158 (624)
T ss_pred hhhcCCceEEEEEChHhCCHH--------------HHHHHHHHhhccC---------------------CCEEEEEecCC
Confidence 223469999999988421 2334444444321 56788889999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+.+++ |+. .+.|+.++.++...+++..+.+.++. ++..+..+++.+.| +.+++.+++..+. ..+..
T Consensus 159 ~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLeqll----~~g~~ 230 (624)
T PRK14959 159 PHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLGQVL----ALGES 230 (624)
T ss_pred hhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH----HhcCC
Confidence 9999999999 985 78999999999999998877655432 23345667776655 5566666665432 22444
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+++.+++
T Consensus 231 ~It~d~V~~~l 241 (624)
T PRK14959 231 RLTIDGARGVL 241 (624)
T ss_pred CcCHHHHHHHh
Confidence 67777765443
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=129.44 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=114.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEE---Eechhhhh---h----h-----cCCchHHHHHHHHHHHhh----CCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLR---VVGSELIQ---K----Y-----LGDGPKLVRELFRVAEEH----APSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~---v~~s~l~~---~----~-----~g~~~~~l~~~f~~a~~~----~P~I 139 (317)
.+||+||||+|||+ ++|+.+.+.-.. -.|..... . + ...+...+|++.+.+... ...|
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV 121 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKI 121 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEE
Confidence 47999999999999 777777653110 01111100 0 0 012345588888777643 2469
Q ss_pred EeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCcccc
Q psy7780 140 VFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALI 219 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~ 219 (317)
++|||+|.+... ....||..|+... ..+++|++|+.++.|+++++
T Consensus 122 ~IIDEa~~LT~~--------------A~NALLKtLEEPP---------------------~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 122 YIIDEVHMLSKS--------------AFNALLKTLEEPP---------------------KHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred EEEEChhhCCHH--------------HHHHHHHHhhcCC---------------------CceEEEEEcCChhhhhHHHH
Confidence 999999987421 2334454444322 56788888899999999999
Q ss_pred CCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Q psy7780 220 RPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 298 (317)
Q Consensus 220 rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~ 298 (317)
+ ||. ++.|.+|+.++...+++..+.+.++.- +..+..++..+.| +.+++.+++..+.... ...|+.+++.+
T Consensus 167 S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl~~y~----~~~It~e~V~e 238 (725)
T PRK07133 167 S--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQVSIFG----NNKITLKNVEE 238 (725)
T ss_pred h--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 9 995 899999999999999988776555432 2235667777666 6777777777654332 23377766655
Q ss_pred H
Q psy7780 299 S 299 (317)
Q Consensus 299 a 299 (317)
.
T Consensus 239 l 239 (725)
T PRK07133 239 L 239 (725)
T ss_pred H
Confidence 3
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=126.08 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=126.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCch---HHHHHHHHHHHhhCCceEeecccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGP---KLVRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~---~~l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
|.+|||++|+|||+ |+++++ +..++++++.++...+..... ..+.++.+.. ..+.+|+|||++.+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY 220 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC
Confidence 67899999999998 777743 578899999988776543221 1222222222 2457999999998854
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CCC---CCccccCCCcce-
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IET---LDPALIRPGRID- 225 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~~---Ld~al~rpgRf~- 225 (317)
+. ..+..+..+++.+..- +.. +|.|+|. |.. +++.|.+ ||.
T Consensus 221 k~---------~~~e~lf~l~N~~~~~----------------------~k~-iIltsd~~P~~l~~l~~rL~S--R~~~ 266 (450)
T PRK14087 221 KE---------KTNEIFFTIFNNFIEN----------------------DKQ-LFFSSDKSPELLNGFDNRLIT--RFNM 266 (450)
T ss_pred CH---------HHHHHHHHHHHHHHHc----------------------CCc-EEEECCCCHHHHhhccHHHHH--HHhC
Confidence 32 1233344444443221 222 5666655 433 5788988 985
Q ss_pred -eEEEeCCCCHHHHHHHHHHHhcCCCC---CcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-CCCcCHHHHHHHH
Q psy7780 226 -RKIEFPLPDEKTKRRIFNIHTSRMTL---AEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-RMKVTNEDFKKSK 300 (317)
Q Consensus 226 -~~I~~~~P~~~~r~~Il~~~l~~~~~---~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-~~~it~~d~~~al 300 (317)
..+.+.+|+.++|.+|++..++..++ -++..+..|+..+.| +++.+..+|++....+.... ...|+.+.+.+++
T Consensus 267 Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l 345 (450)
T PRK14087 267 GLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 345 (450)
T ss_pred CceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHH
Confidence 67789999999999999999876442 123345667777766 89999999998876666542 3679999999988
Q ss_pred HHHH
Q psy7780 301 ESVL 304 (317)
Q Consensus 301 ~~v~ 304 (317)
+.+.
T Consensus 346 ~~~~ 349 (450)
T PRK14087 346 RDIP 349 (450)
T ss_pred hhcc
Confidence 8764
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=123.31 Aligned_cols=190 Identities=20% Similarity=0.313 Sum_probs=122.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
+++||.||||||||+ ++|..++.+|..++++.+.. .|+|+. +..+..++..+ ....|+||||||+|.+.++
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 479999999999999 99999999999999988753 588875 44555555432 2345789999999999886
Q ss_pred ccCCCCC---chhHHHHHHHHHHHHhcCCCcc---cccccchhhhcccccccCCCCeEEEEEcCCC--------------
Q psy7780 152 RYDSNSG---GEREIQRTMLELLNQLDGFDSR---VQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------------- 211 (317)
Q Consensus 152 r~~~~~~---~~~~~~~~l~~ll~~ld~~~~~---~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------------- 211 (317)
+.+...+ ....+++.|+++| +|.... ..+...+ ..+.++|+|+|-.
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iL---eG~~~~v~~~~gr~~~-----------~~~~i~i~TsNilfi~~Gaf~g~~~i~ 262 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKII---EGTVANVPPQGGRKHP-----------YQEFIQIDTSNILFICGGAFVGLEKII 262 (413)
T ss_pred hccccccccccchhHHHHHHHHh---hccceecccCCCcccc-----------CCCeEEEEcCCceeeecccccChHHHH
Confidence 5322111 1124566666655 443211 0011100 0345556665540
Q ss_pred -------------C-----------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHH----hcC---
Q psy7780 212 -------------E-----------------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH----TSR--- 248 (317)
Q Consensus 212 -------------~-----------------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~----l~~--- 248 (317)
+ .+.|+++. |++.++.|.+.+.++..+|+... +++
T Consensus 263 ~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~ 340 (413)
T TIGR00382 263 KKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQA 340 (413)
T ss_pred HHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 14577777 99999999999999999998652 221
Q ss_pred ------CCCC-cCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 249 ------MTLA-EDVNLQELIMA--KDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 249 ------~~~~-~~~~~~~ia~~--t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
..+. ++..++.|++. ...+-.+-|+.++++..+.+..+
T Consensus 341 ~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 341 LFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred HhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 1111 22335667765 34566888999988877655543
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=113.19 Aligned_cols=174 Identities=16% Similarity=0.237 Sum_probs=110.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.+++|++|||||+ |++++ .+....+++..++.. .+.++++... +..+|+|||++.+....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~--- 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR--- 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh---
Confidence 46899999999998 65444 356667777655432 2334444443 34699999999886443
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC-CCCCC---CccccCCCcc--eeEEE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN-RIETL---DPALIRPGRI--DRKIE 229 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN-~~~~L---d~al~rpgRf--~~~I~ 229 (317)
+.+..+..+++.+.. .+..+|+|+| .|..+ +++|++ || ...+.
T Consensus 110 ------~~~~~lf~l~n~~~~-----------------------~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~ 158 (233)
T PRK08727 110 ------EDEVALFDFHNRARA-----------------------AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIG 158 (233)
T ss_pred ------HHHHHHHHHHHHHHH-----------------------cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEE
Confidence 112334445544321 1233666665 46655 789999 97 46889
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+++|+.+++.+|++.+....++. ++..+..+++.+.| +.+.+.++++.....+...+ ..||.+.+.+.+.
T Consensus 159 l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 159 LPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 99999999999999865433332 33346677777664 44555555665544344444 4799999887764
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-13 Score=124.19 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=112.9
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh--hcCCchHH----------HHHHHHHHHhhCCceEeecc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK--YLGDGPKL----------VRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~--~~g~~~~~----------l~~~f~~a~~~~P~Ii~iDE 144 (317)
++++|+.|+||||||+ ++|.+++.++++|+++.-+.. .+|...-. ....+..|.+ .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3489999999999999 999999999999998765544 44542111 1112334443 358999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccc-cccCC-CCeEEEEEcCCCC----------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLT-LIYLP-GDVKVIMATNRIE---------- 212 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~vI~tTN~~~---------- 212 (317)
+|..-+ +++..|..+|+. .+. .+.... ....+ ..+.||+|+|..+
T Consensus 143 in~a~p-----------~~~~~L~~lLE~-~~~-----------l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~G 199 (327)
T TIGR01650 143 YDAGRP-----------DVMFVIQRVLEA-GGK-----------LTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHG 199 (327)
T ss_pred hhccCH-----------HHHHHHHHHhcc-CCe-----------EEECCCceEecCCCCeEEEEeeCCCCcCCCCcceee
Confidence 997632 245556666653 110 011000 11112 4689999999865
Q ss_pred --CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CC---CHHHHHHh----------CCCCCHHHHHHHH
Q psy7780 213 --TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DV---NLQELIMA----------KDDLSGADIKAIC 276 (317)
Q Consensus 213 --~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~---~~~~ia~~----------t~g~s~~dl~~l~ 276 (317)
.+++|++. ||-.++.+++|+.++-.+|+........... +. .+-++|.. ..++|+|.+....
T Consensus 200 t~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~ 277 (327)
T TIGR01650 200 TQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWA 277 (327)
T ss_pred eecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHH
Confidence 27899999 9988899999999999999987654332100 00 01222222 2457888888777
Q ss_pred HHHHH
Q psy7780 277 TEAGL 281 (317)
Q Consensus 277 ~~A~~ 281 (317)
+.+.+
T Consensus 278 ~~~~~ 282 (327)
T TIGR01650 278 ENAEI 282 (327)
T ss_pred HHHHh
Confidence 66543
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=122.84 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=111.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------EEEEechhhhhhhcCCchHHHHHHHHHHHhh----CCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------FLRVVGSELIQKYLGDGPKLVRELFRVAEEH----APSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~Ii~i 142 (317)
++|||||||+|||+ ++|+++.++ ++.++.. ...+...++.+++.+... .+.||+|
T Consensus 41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviI 114 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYII 114 (367)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEE
Confidence 57899999999999 777776442 2222221 112346777888776532 2469999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPG 222 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpg 222 (317)
||+|.+... .+..++..++... ...++|++|+.+..+.+++.+
T Consensus 115 DE~~~l~~~--------------~~~~ll~~le~~~---------------------~~~~~Il~~~~~~kl~~~l~s-- 157 (367)
T PRK14970 115 DEVHMLSSA--------------AFNAFLKTLEEPP---------------------AHAIFILATTEKHKIIPTILS-- 157 (367)
T ss_pred eChhhcCHH--------------HHHHHHHHHhCCC---------------------CceEEEEEeCCcccCCHHHHh--
Confidence 999977421 2344555444321 445677777788899999998
Q ss_pred cceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 223 RIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 223 Rf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
|+. .++|+.|+.++...++.....+.++. ++..+..++..+.| +.+.+.+.++.....+ +.. |+.+++.+.+
T Consensus 158 r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 158 RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CCC-CCHHHHHHHh
Confidence 885 68999999999999998877665543 33456667776654 6666666666554433 222 6766666553
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=111.44 Aligned_cols=170 Identities=13% Similarity=0.139 Sum_probs=112.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
.+.+|+|+||||||+ ++++++ +..++.+++.++... +.. .....+|+|||+|.+...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~--- 105 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA--- 105 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch---
Confidence 378899999999998 676654 668888888775432 111 123579999999987321
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCCcc--eeEEE
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPGRI--DRKIE 229 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpgRf--~~~I~ 229 (317)
.+..+..+++.+.. . +..++|.+++.+. .+.+.+.+ || ...++
T Consensus 106 --------~~~~L~~~~~~~~~---~-------------------~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~ 153 (227)
T PRK08903 106 --------QQIALFNLFNRVRA---H-------------------GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYE 153 (227)
T ss_pred --------HHHHHHHHHHHHHH---c-------------------CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEE
Confidence 13344455544322 1 3333455554322 35577777 87 46999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+|+|+.+++..+++.+..+.++. ++..+..+++...| +.+++.++++.-...|...+ ..||...+.+++.
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 99999999999998876554433 23345667776555 88899889887554554444 6899999988764
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=128.86 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=114.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+. ++++++.+ ..+...++++.+.+..
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~ 113 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKY 113 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHh
Confidence 46899999999999 777776542 44444322 1234567777776643
Q ss_pred hC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 HA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.. ..|++|||+|.+... ..+.|+..|+... .++++|++||.
T Consensus 114 ~p~~~~~KVvIIdev~~Lt~~--------------a~naLLk~LEepp---------------------~~~~fIl~t~~ 158 (576)
T PRK14965 114 LPSRSRYKIFIIDEVHMLSTN--------------AFNALLKTLEEPP---------------------PHVKFIFATTE 158 (576)
T ss_pred ccccCCceEEEEEChhhCCHH--------------HHHHHHHHHHcCC---------------------CCeEEEEEeCC
Confidence 21 249999999988421 2334444444322 56888899999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|.+.+++ |+. .+.|..++.++....++..+++.++. ++..+..+++.+.| +.+++.+++..+..++ ..
T Consensus 159 ~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqliay~----g~ 230 (576)
T PRK14965 159 PHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLAFC----GD 230 (576)
T ss_pred hhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cC
Confidence 9999999999 985 88999999999888888877665543 33346667777776 6777777777554443 13
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+|+...
T Consensus 231 ~It~edV~~l 240 (576)
T PRK14965 231 AVGDDDVAEL 240 (576)
T ss_pred CCCHHHHHHH
Confidence 4777766544
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=117.25 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=127.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCce-----EEEEechhhh----------hhh-----cCCc-hHHHHHHHHHHHh-hCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSAT-----FLRVVGSELI----------QKY-----LGDG-PKLVRELFRVAEE-HAP 137 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~-----~~~v~~s~l~----------~~~-----~g~~-~~~l~~~f~~a~~-~~P 137 (317)
.++||+||||||. .+++++.-. +++|||...- ++. .|.+ ...+..+++.... ...
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 5689999999998 666665433 8999995532 211 1222 2223333333333 345
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CC
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TL 214 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~L 214 (317)
.||++||+|.|..+.+ .+|..|+...+.. . .+|.+|+.+|..+ .+
T Consensus 125 ~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~-------------------~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 125 VIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--K-------------------VKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred EEEEEcchhhhccccc-----------hHHHHHHhhcccc--c-------------------eeEEEEEEeccHHHHHHh
Confidence 7899999999987651 4666666654443 1 5688999999864 68
Q ss_pred CccccCCCcc-eeEEEeCCCCHHHHHHHHHHHhcCC-C--CCcCCCHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 215 DPALIRPGRI-DRKIEFPLPDEKTKRRIFNIHTSRM-T--LAEDVNLQELI---MAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 215 d~al~rpgRf-~~~I~~~~P~~~~r~~Il~~~l~~~-~--~~~~~~~~~ia---~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
||.+.+ +| ...|.||+++.+|..+|++...... . .-.+.-++-+| ....| ..+-...+|+.|+..|.+++
T Consensus 173 d~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 173 DPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREG 249 (366)
T ss_pred hhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhC
Confidence 899988 66 4569999999999999999887532 1 11122222233 33344 45555688999999999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 ~~~it~~d~~~al~~v~ 304 (317)
...++.+++.+|.+.+-
T Consensus 250 ~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 250 SRKVSEDHVREAQEEIE 266 (366)
T ss_pred CCCcCHHHHHHHHHHhh
Confidence 99999999999955544
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-12 Score=132.11 Aligned_cols=168 Identities=21% Similarity=0.121 Sum_probs=108.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce--------------------------EEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT--------------------------FLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~--------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
.+||+||+|||||+ ++|+.+.|. |+.+++.+. .+-..+|++-+.+
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~ 112 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERA 112 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHH
Confidence 47999999999999 788877652 333333211 1233455544433
Q ss_pred H----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 E----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
. .....|++|||+|.+... ..+ .||..|+... .++++|++|
T Consensus 113 ~~~p~~~~~KV~IIDEad~lt~~-----------a~N---aLLK~LEEpP---------------------~~~~fIl~t 157 (824)
T PRK07764 113 FFAPAESRYKIFIIDEAHMVTPQ-----------GFN---ALLKIVEEPP---------------------EHLKFIFAT 157 (824)
T ss_pred HhchhcCCceEEEEechhhcCHH-----------HHH---HHHHHHhCCC---------------------CCeEEEEEe
Confidence 2 233469999999998431 233 4444444332 567888888
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
+.++.|.+.|++ |+. .+.|..++.++..++|+..+++.++. .+..+..++..+.| +.+++.+++......+ +
T Consensus 158 t~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLia~~---~ 230 (824)
T PRK07764 158 TEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLLAGA---G 230 (824)
T ss_pred CChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc---C
Confidence 999999999999 984 88999999999999998887665543 22234556666655 7777777776544221 2
Q ss_pred CCCcCHHHHH
Q psy7780 288 RMKVTNEDFK 297 (317)
Q Consensus 288 ~~~it~~d~~ 297 (317)
...||.+++.
T Consensus 231 ~~~IT~e~V~ 240 (824)
T PRK07764 231 PEGVTYERAV 240 (824)
T ss_pred CCCCCHHHHH
Confidence 3345555443
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-12 Score=122.51 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=112.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|..+++ .++.+++++ ..+...++.+.+.+..
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~ 113 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSY 113 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHh
Confidence 46899999999998 77776653 122222211 1223446666665543
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. .+.|++|||+|.+... .++.|+..++... ..+++|.+|+.
T Consensus 114 ~P~~~~~KVvIIDEad~Lt~~--------------a~naLLk~LEepp---------------------~~~v~Il~tt~ 158 (486)
T PRK14953 114 TPIKGKYKVYIIDEAHMLTKE--------------AFNALLKTLEEPP---------------------PRTIFILCTTE 158 (486)
T ss_pred CcccCCeeEEEEEChhhcCHH--------------HHHHHHHHHhcCC---------------------CCeEEEEEECC
Confidence 2 2469999999977421 2234444444322 45667777788
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++++++ |+. .+.|++|+.++...+++..+++.++. ++..+..++..+.| +.+++.++++.+...+ ..
T Consensus 159 ~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~~----~~ 230 (486)
T PRK14953 159 YDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTYG----EG 230 (486)
T ss_pred HHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CC
Confidence 8899999998 885 79999999999999999988766554 22335666766665 6777778887765442 34
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.+|.+++.+++
T Consensus 231 ~It~~~V~~~l 241 (486)
T PRK14953 231 KVTIKVVEEFL 241 (486)
T ss_pred CcCHHHHHHHh
Confidence 57777776643
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=126.89 Aligned_cols=169 Identities=20% Similarity=0.143 Sum_probs=110.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc--------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA--------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAE 133 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~--------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~ 133 (317)
+||+||+|||||+ ++|+.+.+ .++.+++++- .+-..++++-+.+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~ 111 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAF 111 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHH
Confidence 6899999999999 77777654 2334443221 12345565555443
Q ss_pred h----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 134 E----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 134 ~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
. ...-|++|||+|.+... ..+.||..|+... .++++|++|+
T Consensus 112 ~~P~~~~~KVvIIDEah~Lt~~--------------A~NALLK~LEEpp---------------------~~~~fIL~tt 156 (584)
T PRK14952 112 YAPAQSRYRIFIVDEAHMVTTA--------------GFNALLKIVEEPP---------------------EHLIFIFATT 156 (584)
T ss_pred hhhhcCCceEEEEECCCcCCHH--------------HHHHHHHHHhcCC---------------------CCeEEEEEeC
Confidence 2 12359999999988421 2334455444332 5688888889
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy7780 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR 288 (317)
Q Consensus 210 ~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~ 288 (317)
.++.|.++|++ |+ ..++|..++.++..+.++..+.+.+.. ++..+..++..+.| +.+++.+++......+ +.
T Consensus 157 e~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~aln~Ldql~~~~---~~ 229 (584)
T PRK14952 157 EPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDTLSVLDQLLAGA---AD 229 (584)
T ss_pred ChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc---CC
Confidence 99999999999 87 489999999999998998887765543 22234455555444 7888888888654432 13
Q ss_pred CCcCHHHHHHH
Q psy7780 289 MKVTNEDFKKS 299 (317)
Q Consensus 289 ~~it~~d~~~a 299 (317)
..||.+++...
T Consensus 230 ~~It~~~v~~l 240 (584)
T PRK14952 230 THVTYQRALGL 240 (584)
T ss_pred CCcCHHHHHHH
Confidence 44666555443
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=126.49 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=111.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
++||+||||+|||+ ++|+.+.+ .++.+++++ ..+-..+|.+.+.+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~ 113 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINY 113 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHh
Confidence 47899999999999 77776643 334444322 1233457777776654
Q ss_pred hC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 HA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.. ..|++|||+|.+... ....|...|++ .. +.+++|++|+.
T Consensus 114 ~P~~~~~KVIIIDEad~Lt~~-----------A~NaLLKtLEE---Pp---------------------~~tvfIL~Tt~ 158 (605)
T PRK05896 114 LPTTFKYKVYIIDEAHMLSTS-----------AWNALLKTLEE---PP---------------------KHVVFIFATTE 158 (605)
T ss_pred chhhCCcEEEEEechHhCCHH-----------HHHHHHHHHHh---CC---------------------CcEEEEEECCC
Confidence 32 249999999987321 22334444443 21 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..|.+++++ |+. .++|++|+.++....++..+.+.+.. ++..+..++..+.| +.+++.++++.+.... + .
T Consensus 159 ~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~~y~---~-~ 230 (605)
T PRK05896 159 FQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLSTFK---N-S 230 (605)
T ss_pred hHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhhc---C-C
Confidence 9999999999 986 79999999999999998877654432 23346667777766 6777777777643332 2 2
Q ss_pred CcCHHHHHH
Q psy7780 290 KVTNEDFKK 298 (317)
Q Consensus 290 ~it~~d~~~ 298 (317)
.|+.+++.+
T Consensus 231 ~It~e~V~e 239 (605)
T PRK05896 231 EIDIEDINK 239 (605)
T ss_pred CCCHHHHHH
Confidence 267666555
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-12 Score=116.22 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=107.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHH-HHHh-----hCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFR-VAEE-----HAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~-~a~~-----~~P~Ii~iDEiD~ 147 (317)
+.+|+|+||||||+ ++++++ ...++.+++++-. ....++..+. .+.. ..+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 46899999999999 777765 3356666554321 1122222222 2221 1245999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... .+..+..++ +... ....+|.++|.+..+.+++.+ |+. .
T Consensus 114 l~~~-----------~~~~L~~~l---e~~~---------------------~~~~lIl~~~~~~~l~~~l~s--r~~-~ 155 (319)
T PRK00440 114 LTSD-----------AQQALRRTM---EMYS---------------------QNTRFILSCNYSSKIIDPIQS--RCA-V 155 (319)
T ss_pred CCHH-----------HHHHHHHHH---hcCC---------------------CCCeEEEEeCCccccchhHHH--Hhh-e
Confidence 8421 123333333 3222 334577778888888888988 886 6
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
++|++|+.++...+++.++++.+.. ++..+..++..+.| +.+.+.+.++.++.. ...||.+++..++
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHh
Confidence 8999999999999999988765543 33456777777655 555555555544332 3567888776665
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=122.43 Aligned_cols=178 Identities=19% Similarity=0.236 Sum_probs=118.3
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCc------------------------e
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSA------------------------T 104 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~------------------------~ 104 (317)
.++.+|+++.| .+||+||||+|||+ ++|+.+.+ .
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 35667777777 35899999999999 66666532 2
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHHhhCC-----ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCc
Q psy7780 105 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-----SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 179 (317)
Q Consensus 105 ~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P-----~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 179 (317)
++.+++++- .+-..++++.+.+.. .| -|++|||+|.+.. +.+..| |..++...
T Consensus 88 v~eldaas~------~gId~IRelie~~~~-~P~~~~~KVvIIDEad~Lt~-----------~A~NAL---LK~LEEpp- 145 (535)
T PRK08451 88 IIEMDAASN------RGIDDIRELIEQTKY-KPSMARFKIFIIDEVHMLTK-----------EAFNAL---LKTLEEPP- 145 (535)
T ss_pred EEEeccccc------cCHHHHHHHHHHHhh-CcccCCeEEEEEECcccCCH-----------HHHHHH---HHHHhhcC-
Confidence 444443220 123456666654432 22 4999999988832 123344 44444322
Q ss_pred ccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHH
Q psy7780 180 RVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQ 258 (317)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~ 258 (317)
..+.+|.+|+.+..|.+++++ |+. .++|.+++.++....++..+++.+.. ++..+.
T Consensus 146 --------------------~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~ 202 (535)
T PRK08451 146 --------------------SYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALE 202 (535)
T ss_pred --------------------CceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 557788888889999999999 984 89999999999998888877665443 234466
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Q psy7780 259 ELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 298 (317)
Q Consensus 259 ~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~ 298 (317)
.++..+.| +.+++.+++..|...+ ...||.+++.+
T Consensus 203 ~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~ 237 (535)
T PRK08451 203 ILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVAD 237 (535)
T ss_pred HHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 77777666 8888888888776554 23455555543
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-12 Score=129.15 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=112.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-----hhcCCchHH-----HHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-----KYLGDGPKL-----VRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-----~~~g~~~~~-----l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|+.||.||||||||. ++|..++.+|+.+++++... +.+|..+.. -..+.+..+++..|||||||+|.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 367999999999999 89999999999999988643 333322111 11233334455569999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC----------------
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---------------- 211 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---------------- 211 (317)
+.+ ++++.|.++++. |.-....+.. ..-.++++|+|||.-
T Consensus 569 a~~-----------~v~~~LLq~ld~--G~ltd~~g~~-----------vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~ 624 (758)
T PRK11034 569 AHP-----------DVFNLLLQVMDN--GTLTDNNGRK-----------ADFRNVVLVMTTNAGVRETERKSIGLIHQDN 624 (758)
T ss_pred hhH-----------HHHHHHHHHHhc--CeeecCCCce-----------ecCCCcEEEEeCCcCHHHHhhcccCcccchh
Confidence 842 355666666542 2111100000 011578899999932
Q ss_pred ---------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHhC--CCCCHH
Q psy7780 212 ---------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMAK--DDLSGA 270 (317)
Q Consensus 212 ---------~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~t--~g~s~~ 270 (317)
..+.|.++. |+|.+|.|++++.++..+|+..++.+. ++. ++..++.++... ..+-.+
T Consensus 625 ~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR 702 (758)
T PRK11034 625 STDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGAR 702 (758)
T ss_pred hHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCc
Confidence 126688888 999999999999999999998776532 121 122234455432 234566
Q ss_pred HHHHHHHHHHHHH
Q psy7780 271 DIKAICTEAGLMA 283 (317)
Q Consensus 271 dl~~l~~~A~~~a 283 (317)
.|+.+++.-....
T Consensus 703 ~l~r~i~~~l~~~ 715 (758)
T PRK11034 703 PMARVIQDNLKKP 715 (758)
T ss_pred hHHHHHHHHHHHH
Confidence 7777776554433
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=110.26 Aligned_cols=175 Identities=18% Similarity=0.192 Sum_probs=113.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.+++|++|||||. ++|+++ +..+++++..++.... ..+.+..+.. .+|+|||++.+..+.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~--- 113 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA--- 113 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh---
Confidence 56799999999998 666543 6778889888876531 2233333332 589999999885442
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEe
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKIEF 230 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I~~ 230 (317)
..+..+..+++.+ ... +..++|+++..|.. +.|.|++ ||. ..+.+
T Consensus 114 ------~~~~~Lf~l~n~~---~~~-------------------g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l 163 (234)
T PRK05642 114 ------DWEEALFHLFNRL---RDS-------------------GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQM 163 (234)
T ss_pred ------HHHHHHHHHHHHH---Hhc-------------------CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeec
Confidence 1123344444332 111 45566666655544 3689999 984 67788
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 231 PLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 231 ~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
..|+.++|..+++......++. ++..++.++++.++ +.+.+..+++.--..++..+ ..||..-+.+++.
T Consensus 164 ~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L~ 233 (234)
T PRK05642 164 RGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHhc
Confidence 9999999999999654433332 23335666766655 78888888776554444433 5588888877653
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=122.77 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=113.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+. ++.+++.+ ..+-..++++.+.+..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~ 113 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMF 113 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHh
Confidence 47999999999999 888877642 23332211 0123456665554432
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+.. ..++.||..++... ..+++|++|+.
T Consensus 114 ~p~~~~~KVvIIDEa~~Ls~--------------~a~naLLK~LEepp---------------------~~~vfI~~tte 158 (563)
T PRK06647 114 PPASSRYRVYIIDEVHMLSN--------------SAFNALLKTIEEPP---------------------PYIVFIFATTE 158 (563)
T ss_pred chhcCCCEEEEEEChhhcCH--------------HHHHHHHHhhccCC---------------------CCEEEEEecCC
Confidence 2346999999998832 23445555555322 56788888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|.++|++ |+. .++|.+++.++..++++..+...++. ++..+..+++.+.| +.+++.+++..+...+ ..
T Consensus 159 ~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~~----~~ 230 (563)
T PRK06647 159 VHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSFS----DS 230 (563)
T ss_pred hHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CC
Confidence 9999999999 986 78999999999999998887654443 23345667777666 7888888887655432 23
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.++.+++.++
T Consensus 231 ~It~e~V~~l 240 (563)
T PRK06647 231 DITLEQIRSK 240 (563)
T ss_pred CCCHHHHHHH
Confidence 4677666554
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=122.08 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=115.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh-------hhhcCCchHHH----HHHHHH------
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI-------QKYLGDGPKLV----RELFRV------ 131 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~-------~~~~g~~~~~l----~~~f~~------ 131 (317)
+.+|+||||||||+ ++++.. +.+|+.++|+.+- ..+.|...... +..+..
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~ 256 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEP 256 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCch
Confidence 58899999999999 444333 4579999987651 11222211100 111110
Q ss_pred ----HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcC-CCc---ccccccchhhhcccccccCCCCeE
Q psy7780 132 ----AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDS---RVQNRRLSEVYSSLTLIYLPGDVK 203 (317)
Q Consensus 132 ----a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~-~~~---~~~~~~~~~~~~~~~~~~~~~~v~ 203 (317)
.......+|||||++.+-.. .+..+..+++.-.- +.+ .........+++.......+.+++
T Consensus 257 ~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~V 325 (615)
T TIGR02903 257 KTGLVTDAHGGVLFIDEIGELDPL-----------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFV 325 (615)
T ss_pred hcCchhhcCCCeEEEeccccCCHH-----------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEE
Confidence 01223469999999887322 34444445443100 000 000000011111111222334566
Q ss_pred EEEEc-CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 204 VIMAT-NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 204 vI~tT-N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
+|++| +.++.++++|++ ||. .++|++++.+++..|++..+.+.... ++..+..+++.+. .++...+++..+..
T Consensus 326 LI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~ 400 (615)
T TIGR02903 326 LIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYG 400 (615)
T ss_pred EEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHH
Confidence 66655 668899999999 997 67899999999999999998765432 2222344444432 55665566655554
Q ss_pred HHHHh--------cCCCcCHHHHHHHHHHH
Q psy7780 282 MALRE--------RRMKVTNEDFKKSKESV 303 (317)
Q Consensus 282 ~a~~~--------~~~~it~~d~~~al~~v 303 (317)
.++.+ ....|+.+|+++++..-
T Consensus 401 ~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 401 YALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 43222 22379999999888753
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-12 Score=117.98 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=98.6
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CCCc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TLDP 216 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~Ld~ 216 (317)
.+||+||++.+-+ ..+..|.+.+++ -.-. +..++.+...+.++++|+|+|..+ .+++
T Consensus 130 GiL~lDEInrl~~-----------~~q~~Lle~mee---~~v~--------v~r~G~~~~~p~rfiviAt~NP~e~~l~~ 187 (334)
T PRK13407 130 GYLYIDEVNLLED-----------HIVDLLLDVAQS---GENV--------VEREGLSIRHPARFVLVGSGNPEEGELRP 187 (334)
T ss_pred CeEEecChHhCCH-----------HHHHHHHHHHHc---CCeE--------EEECCeEEecCCCEEEEecCCcccCCCCH
Confidence 5999999998743 235555555543 1100 112233345567899999999755 5999
Q ss_pred cccCCCcceeEEEeCCCCH-HHHHHHHHHHhcCCC----C------CcCCC-----------------------HHHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDE-KTKRRIFNIHTSRMT----L------AEDVN-----------------------LQELIM 262 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~-~~r~~Il~~~l~~~~----~------~~~~~-----------------------~~~ia~ 262 (317)
+++. ||...+.+++|.. ++|.+|++....... . ..... +.+++.
T Consensus 188 aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~ 265 (334)
T PRK13407 188 QLLD--RFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCI 265 (334)
T ss_pred HHHh--hcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHH
Confidence 9999 9999999999976 999999987532110 0 00000 122222
Q ss_pred hCCCC-CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 263 AKDDL-SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 263 ~t~g~-s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
.+.-- .-+++. +++.|...|+.+++..|+.+|+..+..-++.++-.
T Consensus 266 ~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 266 ALGSDGLRGELT-LLRAARALAAFEGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred HHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhcc
Confidence 32212 344444 88889999999999999999999999888877754
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=107.64 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=102.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
.+||||||||||+ ++|+..+..++. .... ....+ . ...+++|||||.+ .
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~---~------- 98 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENW---Q------- 98 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccc---h-------
Confidence 6799999999999 778877764332 1110 01111 1 2369999999943 0
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC--CCccccCCCcce--eEEEeCCCCH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET--LDPALIRPGRID--RKIEFPLPDE 235 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~--Ld~al~rpgRf~--~~I~~~~P~~ 235 (317)
+. .+..+++.+.. . +..++|+++..|.. + |+|++ |+. ..+.+..|+.
T Consensus 99 ~~----~lf~l~N~~~e---~-------------------g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~ 149 (214)
T PRK06620 99 EP----ALLHIFNIINE---K-------------------QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDD 149 (214)
T ss_pred HH----HHHHHHHHHHh---c-------------------CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCH
Confidence 11 22333333221 1 56677777766554 6 78998 985 3689999999
Q ss_pred HHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 236 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+.+..+++......++. ++..++.++.+..+ +.+.+.++++.....+... ...||.+.+.+++
T Consensus 150 ~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 150 ELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHh
Confidence 99999998887654443 33346667777665 7777777777644334433 3569998888765
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=120.08 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=107.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAE 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~ 133 (317)
.+||+||||+|||+ ++|+.+.+ .++.+++..- .+-..++.+-+...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~ 114 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVL 114 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHH
Confidence 47899999999999 67666543 2444443211 11234444333332
Q ss_pred ----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 134 ----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 134 ----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
.....||+|||+|.+... ..+.|+..++... +.+.+|++||
T Consensus 115 ~~~~~~~~kvvIIdead~lt~~--------------~~n~LLk~lEep~---------------------~~~~~Il~t~ 159 (451)
T PRK06305 115 FTPSKSRYKIYIIDEVHMLTKE--------------AFNSLLKTLEEPP---------------------QHVKFFLATT 159 (451)
T ss_pred hhhhcCCCEEEEEecHHhhCHH--------------HHHHHHHHhhcCC---------------------CCceEEEEeC
Confidence 234579999999988421 2234455544422 5677888888
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy7780 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR 288 (317)
Q Consensus 210 ~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~ 288 (317)
.++.|.+++++ |+. .++|+.++.++...+++..+++.+.. ++..+..++..+.| +.+++.+.++..... .+
T Consensus 160 ~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~~~---~~- 231 (451)
T PRK06305 160 EIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVVGL---FP- 231 (451)
T ss_pred ChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-
Confidence 89999999999 985 79999999999999888877654433 23346667777655 566666666544322 11
Q ss_pred CCcCHHHHHHH
Q psy7780 289 MKVTNEDFKKS 299 (317)
Q Consensus 289 ~~it~~d~~~a 299 (317)
..|+.+++.++
T Consensus 232 ~~It~~~V~~l 242 (451)
T PRK06305 232 KSLDPDSVAKA 242 (451)
T ss_pred CCcCHHHHHHH
Confidence 33666665543
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.6e-12 Score=120.11 Aligned_cols=174 Identities=12% Similarity=0.116 Sum_probs=112.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce--------------------------------EEEEechhhhhhhcCCchHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT--------------------------------FLRVVGSELIQKYLGDGPKLVR 126 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~--------------------------------~~~v~~s~l~~~~~g~~~~~l~ 126 (317)
.+||+||||+|||+ ++|+++.+. ++.+++.+ ..+...++
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir 113 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIR 113 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHH
Confidence 47899999999999 788877652 22222211 11234566
Q ss_pred HHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCe
Q psy7780 127 ELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDV 202 (317)
Q Consensus 127 ~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v 202 (317)
++.+.+... ...|++|||+|.+... ....++..++... ...
T Consensus 114 ~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------------~~~~LLk~LEep~---------------------~~t 158 (397)
T PRK14955 114 LLRENVRYGPQKGRYRVYIIDEVHMLSIA--------------AFNAFLKTLEEPP---------------------PHA 158 (397)
T ss_pred HHHHHHhhchhcCCeEEEEEeChhhCCHH--------------HHHHHHHHHhcCC---------------------CCe
Confidence 665555321 1259999999988421 2223444444321 456
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 203 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
++|++|+.+..+.+++++ |+. .++|++++.++....++..+++.+.. ++..+..++..+.| +.+.+.+.++.+..
T Consensus 159 ~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~ 234 (397)
T PRK14955 159 IFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIA 234 (397)
T ss_pred EEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 677777778889999998 885 79999999999888888877654432 23345667777665 77777777776655
Q ss_pred HHHH-hcCCCcCHHHHHHHH
Q psy7780 282 MALR-ERRMKVTNEDFKKSK 300 (317)
Q Consensus 282 ~a~~-~~~~~it~~d~~~al 300 (317)
++.. .....|+.+++.+.+
T Consensus 235 ~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 235 FSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred hccccCCCCccCHHHHHHHH
Confidence 5432 234578887776544
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=122.06 Aligned_cols=177 Identities=17% Similarity=0.152 Sum_probs=118.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe-------------chhhhhhh----------cCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV-------------GSELIQKY----------LGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~-------------~s~l~~~~----------~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||+|+|||+ ++|+.+.+.....+ |..+.... ...+-..||++.+.++..
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~ 127 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR 127 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc
Confidence 57999999999999 88888876422111 11111100 012245688888777533
Q ss_pred C----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 A----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
. ..|++|||+|.+.. ...+.||..|+... .++.+|++|+.+
T Consensus 128 P~~a~~KVvIIDEad~Ls~--------------~a~naLLKtLEePp---------------------~~~~fIl~tte~ 172 (598)
T PRK09111 128 PVSARYKVYIIDEVHMLST--------------AAFNALLKTLEEPP---------------------PHVKFIFATTEI 172 (598)
T ss_pred hhcCCcEEEEEEChHhCCH--------------HHHHHHHHHHHhCC---------------------CCeEEEEEeCCh
Confidence 2 46999999998842 12334444444322 567788888888
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMK 290 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~ 290 (317)
+.+.+.+++ |+. .+.|..|+.++...+++..+++.+.. .+..+..++..+.| +.+++.+++..+... +...
T Consensus 173 ~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~----g~g~ 244 (598)
T PRK09111 173 RKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAH----GAGE 244 (598)
T ss_pred hhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh----cCCC
Confidence 889999999 984 89999999999999998887765543 22345566777666 788888888766543 2346
Q ss_pred cCHHHHHHHHH
Q psy7780 291 VTNEDFKKSKE 301 (317)
Q Consensus 291 it~~d~~~al~ 301 (317)
|+.+++...+.
T Consensus 245 It~e~V~~llg 255 (598)
T PRK09111 245 VTAEAVRDMLG 255 (598)
T ss_pred cCHHHHHHHhC
Confidence 88888876553
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=115.74 Aligned_cols=210 Identities=19% Similarity=0.261 Sum_probs=137.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcC-CchHHHHHHHHHHH-----------------------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLG-DGPKLVRELFRVAE----------------------- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g-~~~~~l~~~f~~a~----------------------- 133 (317)
.+||+||||||||+ ++|..++.+|+.++++.+.. .|+| +.+..++.+|+.|.
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~ri 128 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERI 128 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57899999999999 99999999999999998874 7888 67888888888770
Q ss_pred --------------------------------------------------------------------------------
Q psy7780 134 -------------------------------------------------------------------------------- 133 (317)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (317)
T Consensus 129 v~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (441)
T TIGR00390 129 VDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQK 208 (441)
T ss_pred HHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCC
Confidence
Q ss_pred ------------------------------------hhCCceEeecccccccccccCCC-CCchhHHHHHHHHHHHHhcC
Q psy7780 134 ------------------------------------EHAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 134 ------------------------------------~~~P~Ii~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~ 176 (317)
..+-.||||||||.++.+..+.+ +-+..-+|+. ||..++|
T Consensus 209 ~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~---LLkilEG 285 (441)
T TIGR00390 209 KKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRD---LLPIVEG 285 (441)
T ss_pred CceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhcc---ccccccC
Confidence 01235999999999997653222 1222235554 4444555
Q ss_pred CCcccccccchhhhcccccccCCCCeEEEEEc----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH----HHhcC
Q psy7780 177 FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN----IHTSR 248 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~----~~l~~ 248 (317)
-.-.... . .....++++|++. ..|+.|=|.|.- ||..++.+..++.++-..||. ..+++
T Consensus 286 t~v~~k~--~---------~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~edL~rILteP~nsLikQ 352 (441)
T TIGR00390 286 STVNTKY--G---------MVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQALTTDDFERILTEPKNSLIKQ 352 (441)
T ss_pred ceeeecc--e---------eEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhcCChhHHHHH
Confidence 3222100 0 1112678898876 346677788876 999999999999999999882 12221
Q ss_pred -------CCCC---cCCCHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHHh
Q psy7780 249 -------MTLA---EDVNLQELIMAK-------DDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 249 -------~~~~---~~~~~~~ia~~t-------~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~~ 305 (317)
.++. .+..+..||+.+ .+.=.+-|+.++.....-+.-+. .-.|+.+-+.+.+..++.
T Consensus 353 y~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 353 YKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred HHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHh
Confidence 1111 223355555543 35445556666665543332221 235788888888887775
Q ss_pred hh
Q psy7780 306 RK 307 (317)
Q Consensus 306 ~~ 307 (317)
..
T Consensus 433 ~~ 434 (441)
T TIGR00390 433 DE 434 (441)
T ss_pred cC
Confidence 43
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=121.13 Aligned_cols=152 Identities=17% Similarity=0.202 Sum_probs=103.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce--------------------------EEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT--------------------------FLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~--------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
.+||+||||+|||+ ++|+.+.+. ++.++.. .+.+...+|++.+.+
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a 113 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERA 113 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHH
Confidence 57899999999999 888887652 2223221 224456788888877
Q ss_pred Hhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 EEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
... ...|++|||+|.+.. ...+.||..++... ..+++|++|
T Consensus 114 ~~~p~~~~~KViIIDEad~Lt~--------------~a~naLLK~LEePp---------------------~~tvfIL~t 158 (620)
T PRK14948 114 QFAPVQARWKVYVIDECHMLST--------------AAFNALLKTLEEPP---------------------PRVVFVLAT 158 (620)
T ss_pred hhChhcCCceEEEEECccccCH--------------HHHHHHHHHHhcCC---------------------cCeEEEEEe
Confidence 532 235999999998832 13344555555322 567788888
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
++++.+.++|++ |+. .++|+.++.++-...++....+.+.. ....+..+++.+.| +.+++.++++.
T Consensus 159 ~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 159 TDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred CChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 889999999999 985 78999998888887777766554332 22336667777666 45666666654
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=115.22 Aligned_cols=211 Identities=18% Similarity=0.265 Sum_probs=137.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcC-CchHHHHHHHHHHH----------------------
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLG-DGPKLVRELFRVAE---------------------- 133 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g-~~~~~l~~~f~~a~---------------------- 133 (317)
+++||.||||||||+ ++|..++.+|+.++++++.. .|+| +.+..++.+|+.|.
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~r 130 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEER 130 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998 99999999999999999886 6999 55788888888881
Q ss_pred ------------------------------------------------h-------------------------------
Q psy7780 134 ------------------------------------------------E------------------------------- 134 (317)
Q Consensus 134 ------------------------------------------------~------------------------------- 134 (317)
.
T Consensus 131 i~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (443)
T PRK05201 131 ILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKK 210 (443)
T ss_pred HHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCC
Confidence 0
Q ss_pred -------------------------------------hCCceEeecccccccccccCCC-CCchhHHHHHHHHHHHHhcC
Q psy7780 135 -------------------------------------HAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 135 -------------------------------------~~P~Ii~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~ 176 (317)
.+-.||||||||.|+.+.++.+ +-+..-+|+. ||..++|
T Consensus 211 ~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~---LLki~EG 287 (443)
T PRK05201 211 KKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRD---LLPLVEG 287 (443)
T ss_pred CceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcc---ccccccc
Confidence 0235999999999997753211 1222235554 4444555
Q ss_pred CCcccccccchhhhcccccccCCCCeEEEEEc----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH----HhcC
Q psy7780 177 FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTSR 248 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~~ 248 (317)
-.-+... . .....+|++|++- ..|+.|-|.|.- ||..++.+..++.++-..||.. .+++
T Consensus 288 ~~v~~k~--~---------~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~~dL~~ILteP~nsLikQ 354 (443)
T PRK05201 288 STVSTKY--G---------MVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDALTEEDFVRILTEPKASLIKQ 354 (443)
T ss_pred ceeeecc--e---------eEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhcCChhHHHHH
Confidence 3222100 0 1112678888865 346777888987 9999999999999999998822 2222
Q ss_pred -------CCCC---cCCCHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHHh
Q psy7780 249 -------MTLA---EDVNLQELIMAK-------DDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 249 -------~~~~---~~~~~~~ia~~t-------~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~~ 305 (317)
.++. .+..+..||+.+ .+.=.+-|+.++.....-+.-+- .-.|+.+-+...+..++.
T Consensus 355 y~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~ 434 (443)
T PRK05201 355 YQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLGDLVK 434 (443)
T ss_pred HHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHHHHHh
Confidence 1111 223355565543 34445556666665543332221 235777777777777765
Q ss_pred hh
Q psy7780 306 RK 307 (317)
Q Consensus 306 ~~ 307 (317)
..
T Consensus 435 ~~ 436 (443)
T PRK05201 435 DE 436 (443)
T ss_pred cC
Confidence 43
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=115.18 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=103.1
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CCC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TLD 215 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~Ld 215 (317)
..++|+||++.+-+ ..+..|.+.+++ +.. . +..+..+...+.++++|+|+|..+ .++
T Consensus 132 ~GvL~lDEi~~L~~-----------~~Q~~Ll~~l~~--g~~-~--------v~r~G~~~~~~~r~iviat~np~eg~l~ 189 (337)
T TIGR02030 132 RGILYIDEVNLLED-----------HLVDVLLDVAAS--GWN-V--------VEREGISIRHPARFVLVGSGNPEEGELR 189 (337)
T ss_pred CCEEEecChHhCCH-----------HHHHHHHHHHHh--CCe-E--------EEECCEEEEcCCCEEEEeccccccCCCC
Confidence 36999999998733 245666665543 100 0 001112233446789999998765 699
Q ss_pred ccccCCCcceeEEEeCCCCH-HHHHHHHHHHhcCC--CCC-----------------------cCCC--------HHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDE-KTKRRIFNIHTSRM--TLA-----------------------EDVN--------LQELI 261 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~-~~r~~Il~~~l~~~--~~~-----------------------~~~~--------~~~ia 261 (317)
++++. ||...+.+++|.. ++|.+|++...... +.. .++. +.+++
T Consensus 190 ~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~ 267 (337)
T TIGR02030 190 PQLLD--RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELC 267 (337)
T ss_pred HHHHh--hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 99999 9999999999975 89999998743210 000 1111 22333
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 262 MAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 262 ~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
..+..-+++--..+++.|...|..+++..|+.+|+..++.-++.++-..
T Consensus 268 ~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~ 316 (337)
T TIGR02030 268 AELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRK 316 (337)
T ss_pred HHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 3444446777778889899999999999999999999999999888653
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=115.97 Aligned_cols=200 Identities=15% Similarity=0.119 Sum_probs=115.6
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCc--eEEEEech-hhhhhhcCCc-hHHH--HHHHHHHHhh---CCceEeeccccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSA--TFLRVVGS-ELIQKYLGDG-PKLV--RELFRVAEEH---APSIVFIDEIDA 147 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s-~l~~~~~g~~-~~~l--~~~f~~a~~~---~P~Ii~iDEiD~ 147 (317)
+|++||+||||||||+ ++|...+. +|..+.+. ..-...+|.. -... ..-|...... ...++|+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 3489999999999999 77765532 33333221 0111222211 0010 1112222111 124999999975
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCCcc
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPGRI 224 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpgRf 224 (317)
+.+ ..+..|.+.+++-. ++.......+|.+++++++ |... ...+|+.. ||
T Consensus 119 asp-----------~~QsaLLeam~Er~-------------~t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~D--RF 171 (498)
T PRK13531 119 AGP-----------AILNTLLTAINERR-------------FRNGAHEEKIPMRLLVTAS-NELPEADSSLEALYD--RM 171 (498)
T ss_pred CCH-----------HHHHHHHHHHHhCe-------------EecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHh--hE
Confidence 432 34556666654411 1122233444444544444 7422 13349999 99
Q ss_pred eeEEEeCCCC-HHHHHHHHHHHhcC--CCC--CcCCC-----------------------HHHHHHh---C---CCCCHH
Q psy7780 225 DRKIEFPLPD-EKTKRRIFNIHTSR--MTL--AEDVN-----------------------LQELIMA---K---DDLSGA 270 (317)
Q Consensus 225 ~~~I~~~~P~-~~~r~~Il~~~l~~--~~~--~~~~~-----------------------~~~ia~~---t---~g~s~~ 270 (317)
-.++.+|+|+ .++-.+|+...... .+. ..-+. +.+++.. + ...|++
T Consensus 172 liri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR 251 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDR 251 (498)
T ss_pred EEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcH
Confidence 9999999997 56667888764321 111 00111 1223321 2 237899
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 271 dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
--.++++-|...|.-.+|..|+++|+. .+..++.++
T Consensus 252 ~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 252 RWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 999999999999999999999999999 778777654
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-11 Score=120.18 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=110.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce-------------------------EEEEechhhhhhhcCCchHHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT-------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAE 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~-------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~ 133 (317)
.+||+||||+|||+ ++|+.+.+. ++.++++. ..+...++++.+.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~ 113 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQ 113 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHh
Confidence 46899999999999 777776542 22232211 122345566655443
Q ss_pred hh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 134 EH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 134 ~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
.. ...||+|||+|.+.. ..+..|+..++... ..+++|++|+
T Consensus 114 ~~p~~~~~kVvIIDEa~~L~~--------------~a~naLLk~LEepp---------------------~~tv~Il~t~ 158 (585)
T PRK14950 114 FRPALARYKVYIIDEVHMLST--------------AAFNALLKTLEEPP---------------------PHAIFILATT 158 (585)
T ss_pred hCcccCCeEEEEEeChHhCCH--------------HHHHHHHHHHhcCC---------------------CCeEEEEEeC
Confidence 22 235999999998742 12334555554432 4566777788
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy7780 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR 288 (317)
Q Consensus 210 ~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~ 288 (317)
..+.+.+.+++ |+. .++|+.++..+...+++....+.++. ++..+..++..+.| +.+++.+.++..... ..
T Consensus 159 ~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~~y----~~ 230 (585)
T PRK14950 159 EVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLATT----YG 230 (585)
T ss_pred ChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cC
Confidence 88889899998 885 78999999999999888887655443 22346677777766 788877777754332 23
Q ss_pred CCcCHHHHHHH
Q psy7780 289 MKVTNEDFKKS 299 (317)
Q Consensus 289 ~~it~~d~~~a 299 (317)
..|+.+++.+.
T Consensus 231 ~~It~e~V~~l 241 (585)
T PRK14950 231 GEISLSQVQSL 241 (585)
T ss_pred CCCCHHHHHHH
Confidence 45777776553
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.2e-11 Score=119.76 Aligned_cols=180 Identities=12% Similarity=0.131 Sum_probs=110.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEE----------Eec---h---hhhh-------hhcC---CchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLR----------VVG---S---ELIQ-------KYLG---DGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~----------v~~---s---~l~~-------~~~g---~~~~~l~~~f~~a 132 (317)
.+||+||||||||+ ++|+.+.+.--. -.| . .+.. .+-| .+...|+++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~ 119 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENV 119 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHH
Confidence 47999999999999 788877662100 011 0 0000 0111 1234566665555
Q ss_pred Hh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 EE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
.. ...-|++|||+|.+... ..+.|+..++... +.+++|++|
T Consensus 120 ~~~P~~~~~KVvIIdEad~Lt~~--------------a~naLLK~LEePp---------------------~~tv~IL~t 164 (620)
T PRK14954 120 RYGPQKGRYRVYIIDEVHMLSTA--------------AFNAFLKTLEEPP---------------------PHAIFIFAT 164 (620)
T ss_pred HhhhhcCCCEEEEEeChhhcCHH--------------HHHHHHHHHhCCC---------------------CCeEEEEEe
Confidence 32 12359999999988421 2334555444432 456677777
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH-Hh
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMAL-RE 286 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~-~~ 286 (317)
+.+..|.+++++ |+. .++|..++.++....++..+.+.+.. ++..++.++..+.| +.+++.+.++....++. ..
T Consensus 165 ~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~ 240 (620)
T PRK14954 165 TELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSE 240 (620)
T ss_pred CChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccc
Confidence 778999999999 884 89999999999888888776654432 33346667777665 66666666665444431 12
Q ss_pred cCCCcCHHHHHHHH
Q psy7780 287 RRMKVTNEDFKKSK 300 (317)
Q Consensus 287 ~~~~it~~d~~~al 300 (317)
....|+.+++.+.+
T Consensus 241 ~~~~It~~~V~~lv 254 (620)
T PRK14954 241 AEKVIAYQGVAELL 254 (620)
T ss_pred cCCccCHHHHHHHH
Confidence 24567777775543
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-11 Score=113.45 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=95.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce-----------------------EEEEechhhhhhhcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT-----------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~-----------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||||+|||+ ++|+.+.+. ++.+.... ...+-..+|++++.+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~ 112 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARR 112 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhC
Confidence 58999999999998 666655442 12221110 112244688888887643
Q ss_pred ----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 ----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
...|++|||+|.+... .++. ||..|+... .++++|.+|+++
T Consensus 113 p~~~~~kViiIDead~m~~~-----------aana---LLk~LEep~---------------------~~~~fIL~a~~~ 157 (394)
T PRK07940 113 PSTGRWRIVVIEDADRLTER-----------AANA---LLKAVEEPP---------------------PRTVWLLCAPSP 157 (394)
T ss_pred cccCCcEEEEEechhhcCHH-----------HHHH---HHHHhhcCC---------------------CCCeEEEEECCh
Confidence 2359999999998432 1233 444444321 445566666669
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 274 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~ 274 (317)
+.|+|++++ |+ ..++|++|+.++..+++.... +.. ......++..+.|..++.+.-
T Consensus 158 ~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 999999999 99 599999999999888876332 222 233556788888877665543
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-11 Score=122.67 Aligned_cols=175 Identities=20% Similarity=0.251 Sum_probs=114.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..||.||||||||+ ++|+.++.+++.++++++.++ |+|..+ ...+.+..+.+..+||+|||+|
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEie 563 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIE 563 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechh
Confidence 46999999999999 999999999999999886542 223221 2234444555666899999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--------------
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------- 212 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------- 212 (317)
.+.+ +++..|.++++. |.-....+.. ..-.+.++|+|||...
T Consensus 564 ka~~-----------~~~~~Ll~~ld~--g~~~d~~g~~-----------vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~ 619 (731)
T TIGR02639 564 KAHP-----------DIYNILLQVMDY--ATLTDNNGRK-----------ADFRNVILIMTSNAGASEMSKPPIGFGSEN 619 (731)
T ss_pred hcCH-----------HHHHHHHHhhcc--CeeecCCCcc-----------cCCCCCEEEECCCcchhhhhhccCCcchhh
Confidence 7742 345555555543 1110000000 0115788999998732
Q ss_pred -----------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC---------CC-cCCCHHHHHHh--CCCCCH
Q psy7780 213 -----------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT---------LA-EDVNLQELIMA--KDDLSG 269 (317)
Q Consensus 213 -----------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~---------~~-~~~~~~~ia~~--t~g~s~ 269 (317)
.+.|.++. |||.+|.|.+.+.++..+|++..+++.. +. ++...+.++.. ...+-.
T Consensus 620 ~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~Ga 697 (731)
T TIGR02639 620 VESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGA 697 (731)
T ss_pred hHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCc
Confidence 25677887 9999999999999999999998875421 11 22224445553 345667
Q ss_pred HHHHHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMAL 284 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~ 284 (317)
+.|+.+++.-....+
T Consensus 698 R~l~r~i~~~~~~~l 712 (731)
T TIGR02639 698 RPLARVIQEEIKKPL 712 (731)
T ss_pred hHHHHHHHHHhHHHH
Confidence 778877776554443
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-11 Score=104.78 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=106.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+..|+|++|+|||+ ++|+..++. +++..++...+ +..... .+|+|||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCCC--------
Confidence 36799999999999 777776655 34333322211 111111 4888999997621
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEeCCC
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKIEFPLP 233 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I~~~~P 233 (317)
.+.++-.+++.+.+. +..+||+++..|.. ..+.|++ ||. ..+++..|
T Consensus 102 ~~~~lf~l~n~~~~~--------------------------g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~p 153 (226)
T PRK09087 102 DETGLFHLINSVRQA--------------------------GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEP 153 (226)
T ss_pred CHHHHHHHHHHHHhC--------------------------CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCC
Confidence 122233333333221 44556666544443 3688999 985 78999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
+.+.|.++++.+++..++. ++..++.|+++..+ +.+.+..+++.-...+...+ ..+|...++++++.+
T Consensus 154 d~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 154 DDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 9999999999998765544 33446667777654 45555555555444554444 559999999998865
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=109.70 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=102.6
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CCC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TLD 215 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~Ld 215 (317)
..+||+||++.+-+. .+..|.+.+++ +. .. +..+..+...+.++++|+|.|..+ .++
T Consensus 145 ~GiL~lDEInrL~~~-----------~Q~~LLeam~e--~~-~~--------ier~G~s~~~p~rfiviaT~np~eg~l~ 202 (350)
T CHL00081 145 RGILYVDEVNLLDDH-----------LVDILLDSAAS--GW-NT--------VEREGISIRHPARFVLVGSGNPEEGELR 202 (350)
T ss_pred CCEEEecChHhCCHH-----------HHHHHHHHHHh--CC-eE--------EeeCCeeeecCCCEEEEeccCcccCCCC
Confidence 369999999988533 35555555543 10 00 000112234457899999999766 599
Q ss_pred ccccCCCcceeEEEeCCCC-HHHHHHHHHHHhcCC--CCC--------cCCC-----------------------HHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPD-EKTKRRIFNIHTSRM--TLA--------EDVN-----------------------LQELI 261 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~-~~~r~~Il~~~l~~~--~~~--------~~~~-----------------------~~~ia 261 (317)
++++. ||...+.+..|+ .+.+.+|++...... +.. .... +.+++
T Consensus 203 ~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~ 280 (350)
T CHL00081 203 PQLLD--RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQIC 280 (350)
T ss_pred HHHHH--HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999 999999999997 699999998753211 000 0001 12233
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 262 MAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 262 ~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
..+.--+++--..+++.|...|+-+++..|+.+|+..+..-++.++-..
T Consensus 281 ~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~~ 329 (350)
T CHL00081 281 SELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLRK 329 (350)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 3344446777777888888899999999999999999999999888653
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=108.83 Aligned_cols=188 Identities=19% Similarity=0.253 Sum_probs=127.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
|.++||+.|.|||. |++++. +..+++++...++..++-.....=.+-|..-. +-.+++||+++.+.++.
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~- 191 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE- 191 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh-
Confidence 78999999999998 666655 45788888888776655333222233455444 33699999999998764
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC---CccccCCCcce--eEE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL---DPALIRPGRID--RKI 228 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L---d~al~rpgRf~--~~I 228 (317)
..+.+.-.+++.+.+. ++-+|+.+-..|..+ .|.|++ ||. ..+
T Consensus 192 ----~~qeefFh~FN~l~~~--------------------------~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~ 239 (408)
T COG0593 192 ----RTQEEFFHTFNALLEN--------------------------GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVV 239 (408)
T ss_pred ----hHHHHHHHHHHHHHhc--------------------------CCEEEEEcCCCchhhccccHHHHH--HHhceeEE
Confidence 1244445555555443 444444444556664 588999 985 667
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+.+|+.+.|..||+......++. ++.-..-++..... +.+++..+++.....|...++ .||.+.+.++++.+...
T Consensus 240 ~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 240 EIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 888999999999999976655554 33335556665443 678888777777666665554 67777777777776643
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=116.02 Aligned_cols=205 Identities=18% Similarity=0.218 Sum_probs=128.0
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCc--eEEEEechhhhhhhcCCchHHHHHHHHHH---------HhhCCceEeeccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELIQKYLGDGPKLVRELFRVA---------EEHAPSIVFIDEI 145 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~~~~~g~~~~~l~~~f~~a---------~~~~P~Ii~iDEi 145 (317)
.|++|+.|+||||||+ ++++.+.. +|+.+..+..-+..+|.. .+...+... .+....+||+||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 5789999999999999 77776643 688887533223233321 111111100 0111259999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPG 222 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpg 222 (317)
+.+-+. .+..|.+.+++ +. .. +..+..+...+.++.||+|+|..+ .|+++|+.
T Consensus 94 ~rl~~~-----------~q~~Ll~al~~--g~-v~--------i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 94 NLLDDG-----------LSNRLLQALDE--GV-VI--------VEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred hhCCHH-----------HHHHHHHHHHc--CC-eE--------EEECCCceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 988532 35555555543 11 00 001122234456789999999876 79999999
Q ss_pred cceeEEEeCC-CCHHHHHHHHHHHhcCCC----C---------------C-----cCCCHHHHHHh--CCCCC-HHHHHH
Q psy7780 223 RIDRKIEFPL-PDEKTKRRIFNIHTSRMT----L---------------A-----EDVNLQELIMA--KDDLS-GADIKA 274 (317)
Q Consensus 223 Rf~~~I~~~~-P~~~~r~~Il~~~l~~~~----~---------------~-----~~~~~~~ia~~--t~g~s-~~dl~~ 274 (317)
||...+.+.. |..++|.+|++.++.... . . ++..+..++.. ..|.+ .+--..
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~ 229 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLF 229 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHH
Confidence 9998888775 467889999987652210 0 0 11111222222 12443 455556
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 275 ICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 275 l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
+++-|...|.-+++..|+.+|+..|+.-++.++...
T Consensus 230 ~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~ 265 (589)
T TIGR02031 230 AVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATR 265 (589)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccC
Confidence 777777888889999999999999999999887643
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=116.79 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=113.6
Q ss_pred hHHHhh--hcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCC------ceEeeccc
Q psy7780 82 SELIQK--YLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP------SIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G--~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P------~Ii~iDEi 145 (317)
+.+..| |++.|||| |+|+++ +.+++++++++-.+ -..++++...+....| -|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 667788 89999999 899997 66899999998422 3467776665543332 59999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcce
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRID 225 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~ 225 (317)
|.+.. ..+..|..++++ .. +++.+|++||.++.+.++|++ ||.
T Consensus 640 D~Lt~-----------~AQnALLk~lEe---p~---------------------~~~~FILi~N~~~kIi~tIrS--RC~ 682 (846)
T PRK04132 640 DALTQ-----------DAQQALRRTMEM---FS---------------------SNVRFILSCNYSSKIIEPIQS--RCA 682 (846)
T ss_pred ccCCH-----------HHHHHHHHHhhC---CC---------------------CCeEEEEEeCChhhCchHHhh--hce
Confidence 99842 234555555544 22 568899999999999999999 994
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 226 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 226 ~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
.+.|++|+.++....++....+.++. ++..+..++..+.| +.+...++++.++
T Consensus 683 -~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 683 -IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred -EEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 89999999999998888776654433 34457788888777 4555556666544
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-11 Score=103.81 Aligned_cols=164 Identities=17% Similarity=0.265 Sum_probs=99.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCch-HHHHHHHHHHHhhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGP-KLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~-~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r 152 (317)
|..+||++|+|||. |+++++ +..++++++.++...+..... ..+.++.+..+ ...+|+||+++.+..+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch
Confidence 45799999999999 777664 678999999888765432221 12222222222 33799999999986432
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eE
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RK 227 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~ 227 (317)
..+..+..+++.+-. . ++.+||++...|.. +++.|.+ ||. ..
T Consensus 114 ---------~~q~~lf~l~n~~~~---~-------------------~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~ 160 (219)
T PF00308_consen 114 ---------RTQEELFHLFNRLIE---S-------------------GKQLILTSDRPPSELSGLLPDLRS--RLSWGLV 160 (219)
T ss_dssp ---------HHHHHHHHHHHHHHH---T-------------------TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEE
T ss_pred ---------HHHHHHHHHHHHHHh---h-------------------CCeEEEEeCCCCccccccChhhhh--hHhhcch
Confidence 234444445444332 1 44455555555665 5678888 885 58
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
+.+..|+.+.|.+|++......++. ++.-++-++....+ +.++|..++++-..
T Consensus 161 ~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 161 VELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp EEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 8999999999999999987665554 22224556666444 77777777765433
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=114.90 Aligned_cols=170 Identities=21% Similarity=0.243 Sum_probs=122.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhh--hhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQ--KYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~--~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|+ |.|.||+|||. .+|... +..++.++.+.++. +|.|+.+..++.+.+..++..+.|+|||||+
T Consensus 194 Pv-LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiH 272 (786)
T COG0542 194 PV-LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIH 272 (786)
T ss_pred Ce-EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 44 45999999998 444433 57899999998874 7999999999999999998889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+.+.-...+ + .....+.|.-.|.. +.+-+|++|+.-+ .=|+||-|
T Consensus 273 tiVGAG~~~G-~-a~DAaNiLKPaLAR--------------------------GeL~~IGATT~~EYRk~iEKD~AL~R- 323 (786)
T COG0542 273 TIVGAGATEG-G-AMDAANLLKPALAR--------------------------GELRCIGATTLDEYRKYIEKDAALER- 323 (786)
T ss_pred hhcCCCcccc-c-ccchhhhhHHHHhc--------------------------CCeEEEEeccHHHHHHHhhhchHHHh-
Confidence 9987643322 1 34456666666655 7788999996533 36999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-----CCHHHHHHh-----CCCCCHHHHHHHHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-----VNLQELIMA-----KDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~-----~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a 283 (317)
||. .|.+..|+.++-..||+-.-.++..... ..+...+.. ++.|-|.---.++.+|+...
T Consensus 324 -RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~ 393 (786)
T COG0542 324 -RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARV 393 (786)
T ss_pred -cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHH
Confidence 996 8999999999999999877554433222 223333333 23344444456666665443
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=117.90 Aligned_cols=203 Identities=18% Similarity=0.232 Sum_probs=125.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC-----------------------------------CceEEEEechhhhhhhcCCch
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT-----------------------------------SATFLRVVGSELIQKYLGDGP 122 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~-----------------------------------~~~~~~v~~s~l~~~~~g~~~ 122 (317)
|++||+|+||||||+ ++++.+ ..+|+.+.++...+..+|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 569999999999999 776665 356777665543333333220
Q ss_pred HHHHHHHHHH---------HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccc
Q psy7780 123 KLVRELFRVA---------EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSL 193 (317)
Q Consensus 123 ~~l~~~f~~a---------~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~ 193 (317)
+...+... ......||||||++.+... .+..|.++++. +.. .+..+.
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~-----------~q~~Ll~~le~--g~~---------~v~r~g 161 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH-----------LVDVLLDAAAM--GVN---------RVEREG 161 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-----------HHHHHHHHHhc--CCE---------EEEECC
Confidence 11111100 0111259999999988532 34555555542 100 001122
Q ss_pred ccccCCCCeEEEEEcCCC-CCCCccccCCCcceeEEEeCCCC-HHHHHHHHHHHhcCC--C-------------------
Q psy7780 194 TLIYLPGDVKVIMATNRI-ETLDPALIRPGRIDRKIEFPLPD-EKTKRRIFNIHTSRM--T------------------- 250 (317)
Q Consensus 194 ~~~~~~~~v~vI~tTN~~-~~Ld~al~rpgRf~~~I~~~~P~-~~~r~~Il~~~l~~~--~------------------- 250 (317)
.+...+.++.+|+|+|.. ..+.++|+. ||+..|.++.|. .+++.++++..+... .
T Consensus 162 ~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 239 (633)
T TIGR02442 162 LSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIA 239 (633)
T ss_pred ceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHH
Confidence 223344679999999964 358999999 999999999874 678888886543210 0
Q ss_pred ----CC-----cCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 251 ----LA-----EDVNLQELIMAK--DDL-SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 251 ----~~-----~~~~~~~ia~~t--~g~-s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+. ++..+..++..+ .|. +.+-...+++-|...|.-+++..|+.+|+.+|++-++.++..
T Consensus 240 ~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~~ 310 (633)
T TIGR02442 240 RARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRRR 310 (633)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhcc
Confidence 00 001112222221 244 456666777888788888999999999999999999988764
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-12 Score=101.35 Aligned_cols=111 Identities=26% Similarity=0.319 Sum_probs=65.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEech-hhhh-hhcCCc-----h----HHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGS-ELIQ-KYLGDG-----P----KLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s-~l~~-~~~g~~-----~----~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|+|++|+||+|||+ ++|..++..|.+|.++ ++.- ...|.. . -.-..+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 57899999999999 9999999999999775 3321 111111 0 0011122 26999999987
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCC
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPG 222 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpg 222 (317)
.-++ .++.+.+.+.+ .++.++..++.+|.+++||+|-|+.+ .|++|++.
T Consensus 74 appk-----------tQsAlLeam~E-------------r~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D-- 127 (131)
T PF07726_consen 74 APPK-----------TQSALLEAMEE-------------RQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD-- 127 (131)
T ss_dssp S-HH-----------HHHHHHHHHHH-------------SEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--
T ss_pred CCHH-----------HHHHHHHHHHc-------------CeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--
Confidence 6443 46777777765 34566777899999999999999977 59999999
Q ss_pred cce
Q psy7780 223 RID 225 (317)
Q Consensus 223 Rf~ 225 (317)
||-
T Consensus 128 RF~ 130 (131)
T PF07726_consen 128 RFM 130 (131)
T ss_dssp TSS
T ss_pred ccc
Confidence 883
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=94.53 Aligned_cols=121 Identities=36% Similarity=0.489 Sum_probs=79.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHH---HHHHHHHHHhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKL---VRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~---l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
.+.+++|+||||||+ .+++.+ +.+++.+++.+............ ....+..+....+.+|++||++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~ 99 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG 99 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH
Confidence 367899999999999 888877 88999999987665433222111 122233445556899999999987211
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--CCCccccCCCcceeEEE
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--TLDPALIRPGRIDRKIE 229 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~Ld~al~rpgRf~~~I~ 229 (317)
....+.+++..+.... ..+.++.+|+++|... .+++.+.+ ||+..+.
T Consensus 100 -----------~~~~~~~~i~~~~~~~------------------~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~ 148 (151)
T cd00009 100 -----------AQNALLRVLETLNDLR------------------IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIV 148 (151)
T ss_pred -----------HHHHHHHHHHhcCcee------------------ccCCCeEEEEecCccccCCcChhHHh--hhccEee
Confidence 1222333333321110 0015688999999877 78888988 9988888
Q ss_pred eCC
Q psy7780 230 FPL 232 (317)
Q Consensus 230 ~~~ 232 (317)
+++
T Consensus 149 ~~~ 151 (151)
T cd00009 149 IPL 151 (151)
T ss_pred cCC
Confidence 763
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-10 Score=103.05 Aligned_cols=103 Identities=25% Similarity=0.246 Sum_probs=82.5
Q ss_pred eEEEEEcCC------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCC
Q psy7780 202 VKVIMATNR------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 268 (317)
Q Consensus 202 v~vI~tTN~------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s 268 (317)
-++|++||| |..||..|+. |+ ..|...+++.++.++|+++..+...+. ++..++.++.....-|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 568888887 5668999999 88 478888889999999999987655444 3445677777766677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 269 GADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 269 ~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
-+-.-+|+.-|...|.++++..|..+|+++|.+-....+
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHH
Confidence 788888999999999999999999999999977655443
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=105.89 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=80.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh----hhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE----LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~----l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
|++|+||||||||+ ++|+.++.+|+.+++.. +.. +.+........-|-.|.+ ...+++|||++.+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~--- 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPE--- 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCCHH---
Confidence 89999999999999 99999999999998531 111 111111111111222322 3579999999977432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-----------CCCCccccCCCc
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-----------ETLDPALIRPGR 223 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-----------~~Ld~al~rpgR 223 (317)
++..|..+++. ++-.. .........++.+|+|+|.+ ..|++|+++ |
T Consensus 196 --------vq~~L~~lLd~--r~l~l-----------~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--R 252 (383)
T PHA02244 196 --------ALIIINSAIAN--KFFDF-----------ADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--R 252 (383)
T ss_pred --------HHHHHHHHhcc--CeEEe-----------cCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--h
Confidence 34444444432 11000 00011122678999999983 568999999 9
Q ss_pred ceeEEEeCCCCHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIF 242 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il 242 (317)
|- .|+|++|+. ....|.
T Consensus 253 Fv-~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 253 FA-PIEFDYDEK-IEHLIS 269 (383)
T ss_pred cE-EeeCCCCcH-HHHHHh
Confidence 95 799999984 333444
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-10 Score=112.75 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=111.2
Q ss_pred cCCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCc------------------------
Q psy7780 70 NQTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSA------------------------ 103 (317)
Q Consensus 70 ~~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~------------------------ 103 (317)
..++.+|++|.| .+|||||+|+|||+ ++|..+.+
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 346667777777 47999999999998 66665542
Q ss_pred -eEEEEechhhhhhhcCCchHHHHHHHHHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 104 -TFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 104 -~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
+++.+++.+ ..+...++.+.+.+.... .-|++|||+|.+.. .....|+..|+...
T Consensus 90 ~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------~a~naLLK~LEepp 149 (614)
T PRK14971 90 YNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------AAFNAFLKTLEEPP 149 (614)
T ss_pred CceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------HHHHHHHHHHhCCC
Confidence 344444321 122446777776664322 24999999998832 12334444444432
Q ss_pred cccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CCCH
Q psy7780 179 SRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DVNL 257 (317)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~~~ 257 (317)
...++|++|+....|-++|++ |+. .++|..++.++....++..+.+.++.- ...+
T Consensus 150 ---------------------~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al 205 (614)
T PRK14971 150 ---------------------SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEAL 205 (614)
T ss_pred ---------------------CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 456677777778899999999 985 799999999999999888776655542 2346
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7780 258 QELIMAKDDLSGADIKAICTEAGLM 282 (317)
Q Consensus 258 ~~ia~~t~g~s~~dl~~l~~~A~~~ 282 (317)
..++..+.| +.+++.+++.....+
T Consensus 206 ~~La~~s~g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 206 NVIAQKADG-GMRDALSIFDQVVSF 229 (614)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 667777654 666766666654433
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.1e-10 Score=108.13 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=126.3
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCceE--EEEech------hhh------
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSATF--LRVVGS------ELI------ 114 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~~~--~~v~~s------~l~------ 114 (317)
.++.+|+|+.| .+||.||-|||||+ .+|..+++.= ..-.|. ++.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 36778888888 89999999999999 7777776531 100111 111
Q ss_pred ----hhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccc
Q psy7780 115 ----QKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRL 186 (317)
Q Consensus 115 ----~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~ 186 (317)
+.-...+-..+|++-+.+.. ...-|.+|||++-+. ...++.||..++.-.
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEEPP-------- 147 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEEPP-------- 147 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcccccCc--------
Confidence 11122345567887777643 224599999999873 245667777665432
Q ss_pred hhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-CCHHHHHHhCC
Q psy7780 187 SEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQELIMAKD 265 (317)
Q Consensus 187 ~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~-~~~~~ia~~t~ 265 (317)
.+|.+|.+|..+..+|+.+++ |+. ++.|...+.++....+...+.+.++..+ ..+.-+++..+
T Consensus 148 -------------~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 148 -------------SHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred -------------cCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 679999999999999999999 995 7899999999999999999887766633 34566677777
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy7780 266 DLSGADIKAICTEAGLMA 283 (317)
Q Consensus 266 g~s~~dl~~l~~~A~~~a 283 (317)
| |.+|..+++..|....
T Consensus 212 G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 212 G-SLRDALSLLDQAIAFG 228 (515)
T ss_pred C-ChhhHHHHHHHHHHcc
Confidence 7 8899999999876553
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=101.46 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=69.4
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCc
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKV 291 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~i 291 (317)
.+.+ |+...+++++.+.++..+++...+...+.. .+..++.+.+.+.|. ++.|..+|..|...|..++...|
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i 254 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREI 254 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCC
Confidence 3556 788889999999999999998887654321 233567778889996 56799999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy7780 292 TNEDFKKSKESVL 304 (317)
Q Consensus 292 t~~d~~~al~~v~ 304 (317)
+.+++..++..+.
T Consensus 255 ~~~~v~~~~~~~~ 267 (269)
T TIGR03015 255 GGEEVREVIAEID 267 (269)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998764
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-10 Score=90.09 Aligned_cols=121 Identities=26% Similarity=0.343 Sum_probs=80.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce---EEEEechhhhhh--------------hcCCchHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT---FLRVVGSELIQK--------------YLGDGPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~---~~~v~~s~l~~~--------------~~g~~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..+++||||||||+ ++|..+... ++.+++...... .........+.+++.|+...|.+|+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 46789999999999 788888775 888887754321 2234566788899999988889999
Q ss_pred ecccccccccccCCCCCchhHHHHHHHHH--HHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CCCCCccc
Q psy7780 142 IDEIDAVGTKRYDSNSGGEREIQRTMLEL--LNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IETLDPAL 218 (317)
Q Consensus 142 iDEiD~l~~~r~~~~~~~~~~~~~~l~~l--l~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~~Ld~al 218 (317)
+||++.+..... ....... ......... .....+|+++|. ....+..+
T Consensus 84 iDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~~~~~~~~~~~~~~ 134 (148)
T smart00382 84 LDEITSLLDAEQ----------EALLLLLEELRLLLLLKS-------------------EKNLTVILTTNDEKDLGPALL 134 (148)
T ss_pred EECCcccCCHHH----------HHHHHhhhhhHHHHHHHh-------------------cCCCEEEEEeCCCccCchhhh
Confidence 999999865431 0000000 000000001 156778999987 45566666
Q ss_pred cCCCcceeEEEeCCC
Q psy7780 219 IRPGRIDRKIEFPLP 233 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P 233 (317)
.+ |++..+.++.+
T Consensus 135 ~~--~~~~~~~~~~~ 147 (148)
T smart00382 135 RR--RFDRRIVLLLI 147 (148)
T ss_pred hh--ccceEEEecCC
Confidence 66 88888888665
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=112.96 Aligned_cols=172 Identities=17% Similarity=0.270 Sum_probs=109.7
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.||.||||||||. ++|..+ ...++.++++++... |+|..+.- .+.+..+++..+||+|||
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDE 676 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDE 676 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEec
Confidence 6999999999999 888887 458899999887543 44443221 233445567779999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC------------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE------------ 212 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~------------ 212 (317)
||... .++...|.++++. |.-....+..+ .-.+.++|+|||...
T Consensus 677 ieka~-----------~~v~~~Llq~ld~--g~l~d~~Gr~v-----------d~~n~iiI~TSNlg~~~~~~~~~~~~~ 732 (852)
T TIGR03345 677 VEKAH-----------PDVLELFYQVFDK--GVMEDGEGREI-----------DFKNTVILLTSNAGSDLIMALCADPET 732 (852)
T ss_pred hhhcC-----------HHHHHHHHHHhhc--ceeecCCCcEE-----------eccccEEEEeCCCchHHHHHhccCccc
Confidence 98653 2345555555543 21111111110 015788999998521
Q ss_pred -----------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC--------CC--C-cCCCHHHHHHhC
Q psy7780 213 -----------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--------TL--A-EDVNLQELIMAK 264 (317)
Q Consensus 213 -----------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~--------~~--~-~~~~~~~ia~~t 264 (317)
.+.|+++. |++ .|.|.+++.++..+|+...+... ++ . ++...+.|+...
T Consensus 733 ~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g 809 (852)
T TIGR03345 733 APDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARC 809 (852)
T ss_pred CcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHc
Confidence 15678888 997 89999999999999998876442 22 1 222245566654
Q ss_pred CC--CCHHHHHHHHHHHHHHH
Q psy7780 265 DD--LSGADIKAICTEAGLMA 283 (317)
Q Consensus 265 ~g--~s~~dl~~l~~~A~~~a 283 (317)
.+ +-.+.++++++.-...+
T Consensus 810 ~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 810 TEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred CCCCCChHHHHHHHHHHHHHH
Confidence 33 45777888777644433
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=110.35 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCCeEEEEEcCCC--CCCCccccCCCcce---eEEEeCC--C-CHHHHHHHHHHHhc---CCCCCcCCC---HHHHHHh
Q psy7780 198 LPGDVKVIMATNRI--ETLDPALIRPGRID---RKIEFPL--P-DEKTKRRIFNIHTS---RMTLAEDVN---LQELIMA 263 (317)
Q Consensus 198 ~~~~v~vI~tTN~~--~~Ld~al~rpgRf~---~~I~~~~--P-~~~~r~~Il~~~l~---~~~~~~~~~---~~~ia~~ 263 (317)
.|.++.+|+++|.. ..++|+|++ ||+ .+++|+. | +.+.|.++.+...+ +.+..+..+ +..+.+.
T Consensus 265 ip~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~ 342 (608)
T TIGR00764 265 VPCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVRE 342 (608)
T ss_pred CccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 45688999999974 579999999 999 7777753 3 56667666554332 221111222 3333321
Q ss_pred ----C---C--CCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 264 ----K---D--DLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 264 ----t---~--g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
+ . -.+.++|.+++++|...|..++...|+.+|+.+|++....+
T Consensus 343 ~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~ 394 (608)
T TIGR00764 343 AQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTL 394 (608)
T ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHH
Confidence 1 1 24579999999999888878888899999999998866543
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=93.77 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=88.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|..+... +..+.... . ..+...++++.+.+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~~~ 90 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFLSR 90 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHHcc
Confidence 47899999999998 566665321 22222110 0 0123466666766654
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....||+|||+|.+... ....|+..++... ....+|++||.
T Consensus 91 ~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~~~---------------------~~~~~il~~~~ 135 (188)
T TIGR00678 91 TPQESGRRVVIIEDAERMNEA--------------AANALLKTLEEPP---------------------PNTLFILITPS 135 (188)
T ss_pred CcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcCCC---------------------CCeEEEEEECC
Confidence 23469999999988432 2223455544421 44667777888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g 266 (317)
+..|.+++++ |+. .++|++|+.++..++++.. +++ +..+..++..+.|
T Consensus 136 ~~~l~~~i~s--r~~-~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 136 PEKLLPTIRS--RCQ-VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred hHhChHHHHh--hcE-EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999 885 8999999999999988876 232 2235555555554
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=112.72 Aligned_cols=176 Identities=23% Similarity=0.269 Sum_probs=111.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
+.||.||||||||+ ++|..+ +.++++++++++... |+|..+ -..+....+.+..+|||||
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllD 674 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFD 674 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEe
Confidence 47899999999999 777766 468999999876432 222211 1233344455555899999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----------
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---------- 213 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---------- 213 (317)
|||.+. ..++..|.+++++ |.-....+.. ..-.+.++|+|||....
T Consensus 675 eieka~-----------~~v~~~Ll~~l~~--g~l~d~~g~~-----------vd~rn~iiI~TSn~g~~~~~~~~~~~~ 730 (852)
T TIGR03346 675 EVEKAH-----------PDVFNVLLQVLDD--GRLTDGQGRT-----------VDFRNTVIIMTSNLGSQFIQELAGGDD 730 (852)
T ss_pred ccccCC-----------HHHHHHHHHHHhc--CceecCCCeE-----------EecCCcEEEEeCCcchHhHhhhccccc
Confidence 999763 3356666666643 1100000000 00156789999998221
Q ss_pred ---------------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHhC--CC
Q psy7780 214 ---------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMAK--DD 266 (317)
Q Consensus 214 ---------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~t--~g 266 (317)
+.|.|+. |+|.++.|.+++.+...+|+...+... ++. ++...+.+++.. ..
T Consensus 731 ~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~ 808 (852)
T TIGR03346 731 YEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPV 808 (852)
T ss_pred HHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCC
Confidence 3467777 999999999999999999998776421 111 122244455542 25
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy7780 267 LSGADIKAICTEAGLMALR 285 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~ 285 (317)
+..+.|++++++.....+.
T Consensus 809 ~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 809 YGARPLKRAIQREIENPLA 827 (852)
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 6788888888877655543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >KOG1514|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=101.45 Aligned_cols=192 Identities=17% Similarity=0.213 Sum_probs=125.9
Q ss_pred hHHHhhhcCCCchh---hhhh---------cC-CceEEEEechhhhh----------hhcCCchH------HHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---------QT-SATFLRVVGSELIQ----------KYLGDGPK------LVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---------~~-~~~~~~v~~s~l~~----------~~~g~~~~------~l~~~f~~a 132 (317)
-.-+.|.||||||. .+-. ++ .+.|++|++-.|.+ .+.|+... .+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 45678999999997 2222 22 36889998866543 33444322 222223311
Q ss_pred -HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 133 -EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 133 -~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
....|+||+|||+|.|+..+ |.+|..+++....-. .+++||+.+|..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt~~~---------------------sKLvvi~IaNTm 551 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPTLKN---------------------SKLVVIAIANTM 551 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCcCCC---------------------CceEEEEecccc
Confidence 23447999999999999775 567777776532211 568888888876
Q ss_pred CCC----CccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCH--HHHHHHHHHHHHHHH
Q psy7780 212 ETL----DPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG--ADIKAICTEAGLMAL 284 (317)
Q Consensus 212 ~~L----d~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~--~dl~~l~~~A~~~a~ 284 (317)
+.. ..-+.+ |++ .+|.|.+++.++..+|+...+.....-.+...+-+|+.-...|| +-...+|++|...|.
T Consensus 552 dlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 552 DLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred cCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 643 333334 543 67899999999999999999887632222223333444333333 345578999999888
Q ss_pred HhcC-------CCcCHHHHHHHHHHHHhhh
Q psy7780 285 RERR-------MKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 285 ~~~~-------~~it~~d~~~al~~v~~~~ 307 (317)
.+.. ..|++.|+.+|+..+....
T Consensus 630 ~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 630 ERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred hhcccccccccceeehHHHHHHHHHHhhhh
Confidence 7665 6799999999999988644
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-10 Score=93.48 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=65.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh------hhhc---CCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI------QKYL---GDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~------~~~~---g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
|++++||||||||+ .+|+.++.+++.++++.-. ..|. +...-. ...+-.|.. .++|++|||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~-~~~l~~a~~-~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFK-DGPLVRAMR-KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEE-E-CCCTTHH-EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccc-ccccccccc-ceeEEEECCcccCC
Confidence 46899999999999 9999999999999886532 2222 111000 000001111 46899999999763
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcc--cccccchhhhcccccccCCCCeEEEEEcCCCC----CCCccccCCCc
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSR--VQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----TLDPALIRPGR 223 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----~Ld~al~rpgR 223 (317)
.++...|..++ +.-.-. ...... ..........++.+|+|+|..+ .+++|+++ |
T Consensus 79 -----------~~v~~~L~~ll---~~~~~~~~~~~~~~----~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 79 -----------PEVLESLLSLL---EERRIQLPEGGEEI----KEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp -----------HHHHHTTHHHH---SSSEEEE-TSSSEE----E--TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred -----------HHHHHHHHHHH---hhCcccccCCCcEE----ecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 22344444444 332111 000000 0000000112489999999998 89999999 9
Q ss_pred c
Q psy7780 224 I 224 (317)
Q Consensus 224 f 224 (317)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=104.06 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=79.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------eEEEEe----chhhhhhhcCC--c----hHHHHHHHHHHHhh--CCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------TFLRVV----GSELIQKYLGD--G----PKLVRELFRVAEEH--APSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------~~~~v~----~s~l~~~~~g~--~----~~~l~~~f~~a~~~--~P~I 139 (317)
.++|+||||||||+ .+|+.+.. .++.+. ..+++..+.-. + ...+.++...|+.. .|++
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~v 275 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYV 275 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcE
Confidence 77899999999999 66666532 222222 22444333111 1 12344555667653 4899
Q ss_pred EeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhc--ccccccCCCCeEEEEEcCCCC----C
Q psy7780 140 VFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYS--SLTLIYLPGDVKVIMATNRIE----T 213 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~--~~~~~~~~~~v~vI~tTN~~~----~ 213 (317)
|+||||+..... +++-+++..++.-... ....++-.+. +...+..|.++.+|+|+|..+ .
T Consensus 276 liIDEINRani~-------------kiFGel~~lLE~~~rg-~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 276 FIIDEINRANLS-------------KVFGEVMMLMEHDKRG-ENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred EEEehhhccCHH-------------Hhhhhhhhhccccccc-cccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 999999975322 3444455544421100 0000010011 123578899999999999998 7
Q ss_pred CCccccCCCcceeEEEeCC
Q psy7780 214 LDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 214 Ld~al~rpgRf~~~I~~~~ 232 (317)
+|.|++| ||. .|++.+
T Consensus 342 lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 342 VDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccHHHHh--hhh-eEEecC
Confidence 9999999 996 566654
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=105.52 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=118.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-eEEEE---echhhhh-----hhcCCchHHHHH-HHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-TFLRV---VGSELIQ-----KYLGDGPKLVRE-LFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-~~~~v---~~s~l~~-----~~~g~~~~~l~~-~f~~a~~~~P~Ii~iDEiD~l 148 (317)
++|++|+||||||+ ++++.... .|... ++..+.. ...|+. .++. .+..| ...+++|||+|.+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A---~~Gil~iDEi~~l 312 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALVLA---DNGVCCIDEFDKM 312 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEEec---CCCEEEEechhhC
Confidence 68999999999998 67665543 33321 2222211 111110 0000 01111 2369999999987
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------------CCC
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------TLD 215 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------~Ld 215 (317)
-.. .+..|.+.+++ -.-. ....+....++.++.||+|+|..+ .|+
T Consensus 313 ~~~-----------~q~~L~e~me~---~~i~--------i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 313 DDS-----------DRTAIHEAMEQ---QTIS--------IAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred CHH-----------HHHHHHHHHhc---CEEE--------EEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 432 34555555543 1100 001122344557899999999863 599
Q ss_pred ccccCCCcceeEE-EeCCCCHHHHHHHHHHHhcCCC---------C--------------------CcCCC---HHHHHH
Q psy7780 216 PALIRPGRIDRKI-EFPLPDEKTKRRIFNIHTSRMT---------L--------------------AEDVN---LQELIM 262 (317)
Q Consensus 216 ~al~rpgRf~~~I-~~~~P~~~~r~~Il~~~l~~~~---------~--------------------~~~~~---~~~ia~ 262 (317)
+++++ |||... ....|+.+...+|.+..+.... . .+.+. .+.+.+
T Consensus 371 ~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~ 448 (509)
T smart00350 371 APILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVK 448 (509)
T ss_pred hHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999 998754 4478999999998877532110 0 00000 010100
Q ss_pred -----h----------CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 263 -----A----------KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 263 -----~----------t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+ ..+.|++.+..+++-|...|.-+.+..|+.+|+..|++-+..
T Consensus 449 ~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 449 AYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred HHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 1 125689999999999999999999999999999999986643
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=103.90 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=95.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh-hhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE-LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~-l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
..||+||||+|||. .+|...+.||+.+-.++ ++.......-..++.+|+.|++..-+||++|+|+.|..=- .
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v----p 615 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV----P 615 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc----c
Confidence 57899999999999 88999999999986654 3332212223469999999999988999999999986321 1
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEeCCCCH-
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFPLPDE- 235 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~-al~rpgRf~~~I~~~~P~~- 235 (317)
-+.+....++..|+..+...... +.+.+|++||.+.+.|.. .++. +|+..|++|..+.
T Consensus 616 IGPRfSN~vlQaL~VllK~~ppk------------------g~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPPK------------------GRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTG 675 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCCC------------------CceEEEEecccHHHHHHHcCHHH--hhhheeecCccCch
Confidence 11111122333444444444333 146778888887766654 4667 8999999998865
Q ss_pred HHHHHHHHH
Q psy7780 236 KTKRRIFNI 244 (317)
Q Consensus 236 ~~r~~Il~~ 244 (317)
++-.+++..
T Consensus 676 ~~~~~vl~~ 684 (744)
T KOG0741|consen 676 EQLLEVLEE 684 (744)
T ss_pred HHHHHHHHH
Confidence 666666654
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-09 Score=108.53 Aligned_cols=177 Identities=23% Similarity=0.266 Sum_probs=105.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCCchHH----HHHHHHHH-HhhCCceEeecc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGDGPKL----VRELFRVA-EEHAPSIVFIDE 144 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~~~~~----l~~~f~~a-~~~~P~Ii~iDE 144 (317)
|+.||.||||||||+ ++|+.+ +.+|+.++++++... .+|..+.. -...+..+ +....++|+|||
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEee
Confidence 357999999999999 888766 457999999886542 12211000 01122333 333348999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI------------- 211 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~------------- 211 (317)
+|.+. ..++..|.++++. |.-....+.. ....+.++|+|||..
T Consensus 679 ieka~-----------~~v~~~Ll~ile~--g~l~d~~gr~-----------vd~rn~iiI~TSN~g~~~~~~~~~~~~~ 734 (857)
T PRK10865 679 VEKAH-----------PDVFNILLQVLDD--GRLTDGQGRT-----------VDFRNTVVIMTSNLGSDLIQERFGELDY 734 (857)
T ss_pred hhhCC-----------HHHHHHHHHHHhh--CceecCCceE-----------EeecccEEEEeCCcchHHHHHhccccch
Confidence 98763 2345666666643 1100000000 001456789999973
Q ss_pred ------------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCCcCCC---HHHHHHhC--CCC
Q psy7780 212 ------------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLAEDVN---LQELIMAK--DDL 267 (317)
Q Consensus 212 ------------~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~~~~~---~~~ia~~t--~g~ 267 (317)
..+.|+|+. |+|..+.|.+++.+...+|++.++.+. ++.-.++ ++.++... ..+
T Consensus 735 ~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~ 812 (857)
T PRK10865 735 AHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVY 812 (857)
T ss_pred HHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccC
Confidence 124578888 999999999999999999988876542 1111122 33344321 123
Q ss_pred CHHHHHHHHHHHHHHH
Q psy7780 268 SGADIKAICTEAGLMA 283 (317)
Q Consensus 268 s~~dl~~l~~~A~~~a 283 (317)
-.+.|+++++.-....
T Consensus 813 GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 813 GARPLKRAIQQQIENP 828 (857)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3567777777654433
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-09 Score=109.20 Aligned_cols=171 Identities=20% Similarity=0.229 Sum_probs=106.6
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhh-----h-------hcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQ-----K-------YLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~-----~-------~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.||.||||||||+ ++|+.+ +.++++++++++.. + |+|..+ ...+.+..+.+..+||+|||
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECC
Confidence 6899999999999 888876 46899999887643 2 333222 22345555555558999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC-----------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET----------- 213 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~----------- 213 (317)
+|... .++.+.|.++++. |.-....+.. ..-.+.++|+|||....
T Consensus 620 ieka~-----------~~v~~~Llq~le~--g~~~d~~g~~-----------v~~~~~i~I~Tsn~g~~~i~~~~~~~gf 675 (821)
T CHL00095 620 IEKAH-----------PDIFNLLLQILDD--GRLTDSKGRT-----------IDFKNTLIIMTSNLGSKVIETNSGGLGF 675 (821)
T ss_pred hhhCC-----------HHHHHHHHHHhcc--CceecCCCcE-----------EecCceEEEEeCCcchHHHHhhccccCC
Confidence 99763 2345555555543 1110000000 00167889999985311
Q ss_pred --------------------------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------C--CC-cCCCH
Q psy7780 214 --------------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------T--LA-EDVNL 257 (317)
Q Consensus 214 --------------------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~--~~-~~~~~ 257 (317)
+.|.++. |+|.+|.|.+.+.++..+|++..+.+. + +. ++...
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~ 753 (821)
T CHL00095 676 ELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIK 753 (821)
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHH
Confidence 2356788 999999999999999999998876542 1 11 11223
Q ss_pred HHHHHh--CCCCCHHHHHHHHHHHHH
Q psy7780 258 QELIMA--KDDLSGADIKAICTEAGL 281 (317)
Q Consensus 258 ~~ia~~--t~g~s~~dl~~l~~~A~~ 281 (317)
+.++.. ...+-.+.|+.+++.-..
T Consensus 754 ~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 754 TLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred HHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 445554 223446667777665443
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=89.40 Aligned_cols=155 Identities=20% Similarity=0.243 Sum_probs=101.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhh-CCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-APSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEiD~l~~~r~~ 154 (317)
++|++|..|||||+ ++.++. |..++.|.-.+|. .+-++++..+.. .+-|||+|++- +..
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~---------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~--- 119 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG---------DLPELLDLLRDRPYKFILFCDDLS--FEE--- 119 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---------cHHHHHHHHhcCCCCEEEEecCCC--CCC---
Confidence 78999999999999 666644 6788888877653 344566655532 35799999864 221
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc------------------
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP------------------ 216 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~------------------ 216 (317)
... ....|-..|||--.. -|.+|++.+|+||-..+++
T Consensus 120 -~d~-------~yk~LKs~LeGgle~-----------------~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~ 174 (249)
T PF05673_consen 120 -GDT-------EYKALKSVLEGGLEA-----------------RPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDT 174 (249)
T ss_pred -CcH-------HHHHHHHHhcCcccc-----------------CCCcEEEEEecchhhccchhhhhccCCCccccCcchH
Confidence 111 123444445553222 1478999999999665543
Q ss_pred -----cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-CCHH----HHHHhCCCCCHHHHHHHHH
Q psy7780 217 -----ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQ----ELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 217 -----al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~-~~~~----~ia~~t~g~s~~dl~~l~~ 277 (317)
+|.. ||...|.|..|+.++=.+|++.++.+.++.-+ ..+. ..|..-.|.||+--++.+.
T Consensus 175 ~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 175 IEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2445 89999999999999999999999987655422 1121 1223345566666655554
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=94.41 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=85.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------------------------ceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------------------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------------------------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
..||+||||+|||+ ++|+++. -.++.++.++....- .....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 48999999999999 8888887 478888887743311 124455555444433
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ..-||+|||+|.+... .+..+...+++ .. .+..+|.+||+
T Consensus 104 ~~~~~~~kviiidead~mt~~-----------A~nallk~lEe---p~---------------------~~~~~il~~n~ 148 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTED-----------AANALLKTLEE---PP---------------------KNTRFILITND 148 (325)
T ss_pred CCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHhcc---CC---------------------CCeEEEEEcCC
Confidence 2 2469999999998542 23344444433 22 56789999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
++.+-+.+++ |+. .+.|++|+...+....+
T Consensus 149 ~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 149 PSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred hhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 9999999999 995 88888876655555444
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=99.81 Aligned_cols=140 Identities=19% Similarity=0.304 Sum_probs=87.8
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-----C
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-----E 212 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-----~ 212 (317)
.+|||||++.+.. ..+..|.+.|+.- .+.-. ........+.++.+|+++|.- .
T Consensus 297 GvLfLDEi~e~~~-----------~~~~~L~~~LE~~-~v~i~----------r~g~~~~~pa~frlIaa~Npcpcg~~~ 354 (499)
T TIGR00368 297 GVLFLDELPEFKR-----------SVLDALREPIEDG-SISIS----------RASAKIFYPARFQLVAAMNPCPCGHYG 354 (499)
T ss_pred CeEecCChhhCCH-----------HHHHHHHHHHHcC-cEEEE----------ecCcceeccCCeEEEEecCCcccCcCC
Confidence 6999999997632 3456666665431 10000 001112244689999999963 1
Q ss_pred ------------------CCCccccCCCcceeEEEeCCCCHH-------------HHHHHHHHH------hcCC---CCC
Q psy7780 213 ------------------TLDPALIRPGRIDRKIEFPLPDEK-------------TKRRIFNIH------TSRM---TLA 252 (317)
Q Consensus 213 ------------------~Ld~al~rpgRf~~~I~~~~P~~~-------------~r~~Il~~~------l~~~---~~~ 252 (317)
.|...|++ |||..+.++.++.+ -|..+.+.. ++.. .+.
T Consensus 355 ~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N 432 (499)
T TIGR00368 355 GKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKN 432 (499)
T ss_pred CCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 48889999 99999999976433 223333221 1111 111
Q ss_pred cCCCH-------------HH---HHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 253 EDVNL-------------QE---LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 253 ~~~~~-------------~~---ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
..... .+ -+....++|.+-...+++-|...|--++...|+.+|+.+|+.
T Consensus 433 ~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 433 ADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred ccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 11111 11 112235689999999999999999999999999999999975
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >KOG1969|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.3e-08 Score=97.70 Aligned_cols=177 Identities=19% Similarity=0.210 Sum_probs=107.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh--------hCCceEeecccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE--------HAPSIVFIDEIDAVGT 150 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~--------~~P~Ii~iDEiD~l~~ 150 (317)
..||+||||-|||| .+|+++|+.+++|++|+= .+...+++-...|-+ .+|..+++||||--.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 46899999999999 999999999999999984 334555555554432 459999999999422
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhh--cccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEE
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVY--SSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKI 228 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~--~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I 228 (317)
.....++..++..-.... .+++..... ++.....+. .-+|+.+|.. --|||+.---|-..|
T Consensus 401 ----------~~~Vdvilslv~a~~k~~---~Gkq~~~~~~rkkkr~~~L~--RPIICICNdL--YaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 401 ----------RAAVDVILSLVKATNKQA---TGKQAKKDKKRKKKRSKLLT--RPIICICNDL--YAPALRPLRPFAEII 463 (877)
T ss_pred ----------HHHHHHHHHHHHhhcchh---hcCcccchhhhhhhcccccc--CCEEEEecCc--cchhhhhcccceEEE
Confidence 234455555555211110 011110000 111112222 2377888864 346664211477899
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
+|++|...-..+=|+....+.++. +.-.+..+++.|. .||++.++.-.+.+...
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASNV 518 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhc
Confidence 999998776666665555444433 2223555666554 49999998777666544
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-09 Score=108.58 Aligned_cols=171 Identities=22% Similarity=0.303 Sum_probs=113.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC---ceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
..||.||.|+|||- ++|..+. -.++++++|+.+.+ |+|..+.- .+-+..+++..|||+||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlD 600 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLD 600 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEec
Confidence 45899999999998 9999997 89999999998764 66655421 23344455556999999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----------
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---------- 213 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---------- 213 (317)
||+.-.+ .+..+|.|.|+. |.-....+..+.+ .+.++|+|||--..
T Consensus 601 EIEKAHp-----------dV~nilLQVlDd--GrLTD~~Gr~VdF-----------rNtiIImTSN~Gs~~i~~~~~~~~ 656 (786)
T COG0542 601 EIEKAHP-----------DVFNLLLQVLDD--GRLTDGQGRTVDF-----------RNTIIIMTSNAGSEEILRDADGDD 656 (786)
T ss_pred hhhhcCH-----------HHHHHHHHHhcC--CeeecCCCCEEec-----------ceeEEEEecccchHHHHhhccccc
Confidence 9997643 344555554431 3222222222221 67899999985211
Q ss_pred ------------------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC---------CC-cCCCHHHHHHhC-
Q psy7780 214 ------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT---------LA-EDVNLQELIMAK- 264 (317)
Q Consensus 214 ------------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~---------~~-~~~~~~~ia~~t- 264 (317)
..|+++. |+|.+|.|.+.+.+...+|+...+.++. +. ++.-.+.++...
T Consensus 657 ~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 657 FADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred cchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 3577888 9999999999999999999988875431 11 112234455543
Q ss_pred -CCCCHHHHHHHHHHHH
Q psy7780 265 -DDLSGADIKAICTEAG 280 (317)
Q Consensus 265 -~g~s~~dl~~l~~~A~ 280 (317)
..|-++-|++++++-.
T Consensus 735 d~~~GARpL~R~Iq~~i 751 (786)
T COG0542 735 DPEYGARPLRRAIQQEI 751 (786)
T ss_pred CCCcCchHHHHHHHHHH
Confidence 2455666777766543
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=95.48 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=73.5
Q ss_pred HHHHHHHHHHH----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 123 KLVRELFRVAE----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 123 ~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
..+|++-+... ....-|++|||+|.+... ..+. +|..++...
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-----------aana---LLk~LEEpp-------------------- 169 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-----------AANA---ILKTLEEPP-------------------- 169 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcCHH-----------HHHH---HHHHHhcCC--------------------
Confidence 34555444333 233569999999998432 1233 444443322
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
.+.++|..|+.++.+.|.+++ |+ ..+.|++|+.++-.++++.......++ +..+..+++.+.| +++...+++..
T Consensus 170 -~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 170 -ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred -CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 446677778889999999999 99 599999999999999998743222211 2224566666666 56555555543
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=95.34 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=72.4
Q ss_pred HHHHHHHHHHH----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 123 KLVRELFRVAE----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 123 ~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
..+|++-+.+. ...|-|++|||+|.+... ..+.|...+++ ..
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~-----------aanaLLK~LEe---pp-------------------- 169 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMNAN-----------AANALLKVLEE---PP-------------------- 169 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-----------HHHHHHHHHhc---CC--------------------
Confidence 44666555543 344779999999987322 23444444443 21
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
.+.++|.+|+.++.+.+.+++ |+. .+.|++|+.++-.+++....... .+..+..++..+.| +++...++
T Consensus 170 -~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~~l~~~s~G-sp~~Al~l 238 (365)
T PRK07471 170 -ARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPDL---PDDPRAALAALAEG-SVGRALRL 238 (365)
T ss_pred -CCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHcCC-CHHHHHHH
Confidence 457788899999999999999 985 89999999999999998764221 11112456666666 44443333
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=94.15 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=92.0
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
...+||+||+|+|||+ ++|+.+.+ .++.+....- + ...+-..+|++.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHHHH
Confidence 3368999999999998 55555543 2333322100 0 012345677776665
Q ss_pred Hh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 EE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
.. ...-|++||++|.+... ..+.|...|++ -. +++++|.+|
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~-----------aaNaLLK~LEE---Pp---------------------~~~~fiL~t 143 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRN-----------AANALLKSLEE---PS---------------------GDTVLLLIS 143 (328)
T ss_pred hhccccCCCeEEEECChhhCCHH-----------HHHHHHHHHhC---CC---------------------CCeEEEEEE
Confidence 43 23468999999988432 23444444444 21 568899999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g 266 (317)
+.++.|.|.+++ |+. .+.|++|+.++..+.+...... ..+.+...++..+.|
T Consensus 144 ~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 144 HQPSRLLPTIKS--RCQ-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred CChhhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 999999999999 996 6999999999888888765421 112223445556665
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-09 Score=89.66 Aligned_cols=116 Identities=21% Similarity=0.179 Sum_probs=67.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc----eEEEEechhhhhhhcCCchHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA----TFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~----~~~~v~~s~l~~~~~g~~~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
.||.||+|||||. ++|+.+.. +++.++++++... ++.+..+..++..+ ......||||||||.+.+.
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 4789999999997 99999996 9999999998661 11222333333321 1111249999999999886
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~ 213 (317)
.+...+-....+++.|+++++ +-.-... .. ....-.++++|+|+|--..
T Consensus 84 ~~~~~~v~~~~V~~~LL~~le---~g~~~d~--~g--------~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 84 NSGGADVSGEGVQNSLLQLLE---GGTLTDS--YG--------RTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TTTCSHHHHHHHHHHHHHHHH---HSEEEET--TC--------CEEEGTTEEEEEEESSSTH
T ss_pred ccccchhhHHHHHHHHHHHhc---ccceecc--cc--------eEEEeCCceEEEecccccc
Confidence 322112222344555555554 3211100 00 0011178999999997543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.2e-09 Score=90.76 Aligned_cols=163 Identities=15% Similarity=0.258 Sum_probs=94.8
Q ss_pred ccCCCceEeechh------------------hHHHhhhcCCCchh---hhhhcC-C----ceEEEEechhhhhhhcCCch
Q psy7780 69 ANQTSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT-S----ATFLRVVGSELIQKYLGDGP 122 (317)
Q Consensus 69 ~~~~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~-~----~~~~~v~~s~l~~~~~g~~~ 122 (317)
++.++..+.||+| +.+|.||||||||+ ++|+++ | --+.++++|+=.+- +.-
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI---DvV 95 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI---DVV 95 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc---HHH
Confidence 3446667777777 56899999999999 888887 2 24677777763210 112
Q ss_pred HHHHHHHHHHHhhC-C---ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 123 KLVRELFRVAEEHA-P---SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 123 ~~l~~~f~~a~~~~-P---~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
++--+.|.+-+-.- | -||++||+|+... +. ++.+..-++...
T Consensus 96 Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------gA----QQAlRRtMEiyS----------------------- 141 (333)
T KOG0991|consen 96 RNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------GA----QQALRRTMEIYS----------------------- 141 (333)
T ss_pred HHHHHHHHHhhccCCCCceeEEEeeccchhhh-------HH----HHHHHHHHHHHc-----------------------
Confidence 22233454433222 2 4999999998742 22 233333332211
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh--cCCCCCcCCCHHHHHHhCCCCCHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHT--SRMTLAEDVNLQELIMAKDDLSGADIKAIC 276 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l--~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~ 276 (317)
+...+..++|..+.|=+.+.+ |+- .+.|...+..+...=+.... .+.+.. +.-++.+.-..+| |+++.+
T Consensus 142 -~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt-~dgLeaiifta~G----DMRQal 212 (333)
T KOG0991|consen 142 -NTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYT-DDGLEAIIFTAQG----DMRQAL 212 (333)
T ss_pred -ccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCC-cchHHHhhhhccc----hHHHHH
Confidence 223377889999988888888 875 66777766655444333332 233332 3346666666555 555444
Q ss_pred H
Q psy7780 277 T 277 (317)
Q Consensus 277 ~ 277 (317)
+
T Consensus 213 N 213 (333)
T KOG0991|consen 213 N 213 (333)
T ss_pred H
Confidence 4
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-08 Score=94.93 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=86.8
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----- 212 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----- 212 (317)
-++|+||++.+-. ..+..|.+.|+.= .+.- .........|.++.+|+|+|...
T Consensus 296 GvLfLDEi~e~~~-----------~~~~~L~~~LE~g-~v~I----------~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 296 GVLFLDELPEFER-----------RTLDALREPIESG-QIHL----------SRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred CEEecCCchhCCH-----------HHHHHHHHHHHcC-cEEE----------ecCCcceeccCCEEEEEeecCccceecC
Confidence 5999999987532 2345555555331 1100 00111223457899999999853
Q ss_pred ----------------CCCccccCCCcceeEEEeCCCCHHH----------HHHHHHHHh--------cCCCCCcCCCHH
Q psy7780 213 ----------------TLDPALIRPGRIDRKIEFPLPDEKT----------KRRIFNIHT--------SRMTLAEDVNLQ 258 (317)
Q Consensus 213 ----------------~Ld~al~rpgRf~~~I~~~~P~~~~----------r~~Il~~~l--------~~~~~~~~~~~~ 258 (317)
.|+.++++ |||..+.++.|+.++ +..|-+... ++-.+.....-.
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~ 431 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSP 431 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHH
Confidence 47779999 999999999884321 111221110 000001111111
Q ss_pred H----------------HHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 259 E----------------LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 259 ~----------------ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
. -+....|+|++....+++-|...|.-+++..|+.+|+.+|+.-
T Consensus 432 ~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 432 EIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 1 1123357899999999999999999999999999999999863
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=86.91 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=112.0
Q ss_pred HHHhhhcCCCchh---hhhh------c---CCceEEEEechh----------hhhh----h--cCCchHHHHHHHHHHHh
Q psy7780 83 ELIQKYLGDGPKL---AVAN------Q---TSATFLRVVGSE----------LIQK----Y--LGDGPKLVRELFRVAEE 134 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~------~---~~~~~~~v~~s~----------l~~~----~--~g~~~~~l~~~f~~a~~ 134 (317)
.|++|++|.|||+ ..+. . ..++++.+.+.. ++.. + .....+.-..+....+.
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~ 143 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRR 143 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999 1111 1 124777775522 1111 1 11112333344566677
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-- 212 (317)
..+-+|+|||++.++..+ ..-++.+..+|..+..-- .-.++.+||-.-..
T Consensus 144 ~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~NeL--------------------~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLGNEL--------------------QIPIVGVGTREAYRAL 195 (302)
T ss_pred cCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHhhcc--------------------CCCeEEeccHHHHHHh
Confidence 888999999999976432 112344444444432111 13455555542222
Q ss_pred CCCccccCCCcceeEEEeCCCC-HHHHHHHHHHHhcCCCCC--cCCCHH----HHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 213 TLDPALIRPGRIDRKIEFPLPD-EKTKRRIFNIHTSRMTLA--EDVNLQ----ELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 213 ~Ld~al~rpgRf~~~I~~~~P~-~~~r~~Il~~~l~~~~~~--~~~~~~----~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
.-|+.+-+ ||+ .+.+|... -++-..++..+-..+++. +...-. .|-..++|.+ +++.++++.|+..|++
T Consensus 196 ~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 196 RTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIR 271 (302)
T ss_pred ccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHh
Confidence 24778888 997 66777653 244456777776666554 233333 3445577855 4888999999999999
Q ss_pred hcCCCcCHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKS 299 (317)
Q Consensus 286 ~~~~~it~~d~~~a 299 (317)
.+.+.||.+.+..+
T Consensus 272 sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 272 SGEERITREILDKI 285 (302)
T ss_pred cCCceecHHHHhhC
Confidence 99999999998653
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.7e-08 Score=90.68 Aligned_cols=140 Identities=11% Similarity=0.169 Sum_probs=88.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--------eEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD 146 (317)
.+||+||+|+|||+ ++|+.+-+ .++.+...+ + ...+-..++++.+.+.. ...-|++||++|
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad 103 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE 103 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechh
Confidence 56899999999999 66665432 233332210 0 11123457776665432 224599999998
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+... ..+ .+|..++... .++++|.+|+.++.+.|.+++ |+.
T Consensus 104 ~m~~~-----------a~n---aLLK~LEepp---------------------~~t~~il~~~~~~~ll~TI~S--Rc~- 145 (313)
T PRK05564 104 KMTEQ-----------AQN---AFLKTIEEPP---------------------KGVFIILLCENLEQILDTIKS--RCQ- 145 (313)
T ss_pred hcCHH-----------HHH---HHHHHhcCCC---------------------CCeEEEEEeCChHhCcHHHHh--hce-
Confidence 87321 233 4444444321 556777777889999999999 995
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g 266 (317)
.++|+.|+.++....++...... . ...+..++..+.|
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~~~l~~~~~g 182 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDI--K-EEEKKSAIAFSDG 182 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCC--C-HHHHHHHHHHcCC
Confidence 89999999999888887655322 1 2224455556555
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=89.05 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=74.8
Q ss_pred HHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 124 LVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 124 ~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
.+|++-+.+.. ....|++||++|.+... ..+.|...|++ .
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~-----------aaNaLLK~LEE---P---------------------- 151 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNEA-----------AANALLKTLEE---P---------------------- 151 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------HHHHHHHHHhC---C----------------------
Confidence 56666655543 23469999999988432 23445555544 2
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
++.++|..|+.++.|-|.+++ |+. .+.|++|+.++..++++....... .+.+...++....| +++...++++
T Consensus 152 p~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 152 GNGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred CCCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCC-CHHHHHHHHH
Confidence 234578888899999999999 994 899999999999999987643211 11224677777777 5555544544
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=95.42 Aligned_cols=203 Identities=16% Similarity=0.129 Sum_probs=129.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCc--hHHHHH---HHH---HHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDG--PKLVRE---LFR---VAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~--~~~l~~---~f~---~a~~~~P~Ii~iDEiD~ 147 (317)
|++++.|.+|||||+ +++.-+. .+|..+..+-=.+..+|.. +..++. .|+ .+..+ ..|||+||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah-~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD-GGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc-CCEEEecCccc
Confidence 578999999999999 6666553 4777765443223333332 111110 010 01112 25999999987
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---CCCCccccCCCcc
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---ETLDPALIRPGRI 224 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---~~Ld~al~rpgRf 224 (317)
+-+ +++..|++-|+.-... +..+..++.+|.++++|++-|.. ..|+++++. ||
T Consensus 105 ~~~--------------~~~~aLleame~G~vt--------IeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf 160 (584)
T PRK13406 105 LEP--------------GTAARLAAALDTGEVR--------LERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RL 160 (584)
T ss_pred CCH--------------HHHHHHHHHHhCCcEE--------EEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--he
Confidence 742 2444555555432211 11356677888999999985433 349999999 99
Q ss_pred eeEEEeCCCCHHHHH-------HHH--HHHhcCCCCCcCCCHHHHHHh--CCCC-CHHHHHHHHHHHHHHHHHhcCCCcC
Q psy7780 225 DRKIEFPLPDEKTKR-------RIF--NIHTSRMTLAEDVNLQELIMA--KDDL-SGADIKAICTEAGLMALRERRMKVT 292 (317)
Q Consensus 225 ~~~I~~~~P~~~~r~-------~Il--~~~l~~~~~~~~~~~~~ia~~--t~g~-s~~dl~~l~~~A~~~a~~~~~~~it 292 (317)
+..+.++.|+..+.. .|. +..+.+..+. +..+..++.. ..|. |.+--..+++-|...|.-+++..|+
T Consensus 161 ~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~ 239 (584)
T PRK13406 161 AFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVE 239 (584)
T ss_pred EEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999988754321 233 2223333332 2223333332 2465 7788888899899999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy7780 293 NEDFKKSKESVLYRKKE 309 (317)
Q Consensus 293 ~~d~~~al~~v~~~~~~ 309 (317)
.+|+.+|+.-++.++..
T Consensus 240 ~~dv~~Aa~lvL~hR~~ 256 (584)
T PRK13406 240 EEDLALAARLVLAPRAT 256 (584)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999988764
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.3e-08 Score=88.40 Aligned_cols=90 Identities=22% Similarity=0.436 Sum_probs=65.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHHH----hhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAE----EHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r 152 (317)
-+|+-||.|||||+ .+|..++.||-.-+++.|.. .|+|+- +..+-++.+.|. +....||+|||||.+..+.
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 56899999999999 99999999999999999876 689887 445566655442 2335799999999999876
Q ss_pred cCCC---CCchhHHHHHHHHHH
Q psy7780 153 YDSN---SGGEREIQRTMLELL 171 (317)
Q Consensus 153 ~~~~---~~~~~~~~~~l~~ll 171 (317)
.+.. +-+..-+|+.|..++
T Consensus 179 eN~SITRDVSGEGVQQALLKii 200 (408)
T COG1219 179 ENPSITRDVSGEGVQQALLKII 200 (408)
T ss_pred CCCCcccccCchHHHHHHHHHH
Confidence 4322 112234566554444
|
|
| >KOG0745|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=6e-08 Score=91.66 Aligned_cols=140 Identities=27% Similarity=0.395 Sum_probs=90.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHHH----hhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAE----EHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r 152 (317)
-+|+-||.|+|||+ .+|.-++.||...+|+.|.+ .|+|+- +..|.+++..|. +.+..||||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 46889999999999 99999999999999999876 689887 667788877662 3445799999999998544
Q ss_pred cCCC---CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCccccCCC
Q psy7780 153 YDSN---SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDPALIRPG 222 (317)
Q Consensus 153 ~~~~---~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~al~rpg 222 (317)
.+-. +-+..-+|+.|+.+++ |---+.. -........+..+.|-|||-. -.||.-+-|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllE---GtvVnVp--------eK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r-- 374 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLE---GTVVNVP--------EKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR-- 374 (564)
T ss_pred ccccccccccchhHHHHHHHHhc---ccEEccc--------CCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--
Confidence 2211 2223346666655554 3211100 000111122444444444432 347777777
Q ss_pred cc-eeEEEeCCCC
Q psy7780 223 RI-DRKIEFPLPD 234 (317)
Q Consensus 223 Rf-~~~I~~~~P~ 234 (317)
|. +..+-|..|+
T Consensus 375 R~~d~slGFg~~s 387 (564)
T KOG0745|consen 375 RLDDKSLGFGAPS 387 (564)
T ss_pred hhcchhcccCCCC
Confidence 76 5667888883
|
|
| >KOG2227|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=85.42 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=118.2
Q ss_pred hHHHhhhcCCCchh-------hhhhcCC-ceEEEEechhhh----------hhh----cCCc-hHHHHHHHHHH-Hhh-C
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTS-ATFLRVVGSELI----------QKY----LGDG-PKLVRELFRVA-EEH-A 136 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~-~~~~~v~~s~l~----------~~~----~g~~-~~~l~~~f~~a-~~~-~ 136 (317)
..-+.|-||||||. ..-.+.. ...++++|.+|. +.+ .+.+ +......|+.= .+. .
T Consensus 177 SlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~ 256 (529)
T KOG2227|consen 177 SLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKF 256 (529)
T ss_pred ceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccc
Confidence 34467889999997 1222222 356888887532 111 2222 22333444432 222 3
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
|-++++||+|.|+..+ +.++.++.+ ++.+.+ .++++|+.+|..|.=|.
T Consensus 257 ~~llVlDEmD~L~tr~-----------~~vLy~lFe-wp~lp~--------------------sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRS-----------QTVLYTLFE-WPKLPN--------------------SRIILIGIANSLDLTDR 304 (529)
T ss_pred eEEEEechhhHHhhcc-----------cceeeeehh-cccCCc--------------------ceeeeeeehhhhhHHHH
Confidence 6789999999998543 223433332 233322 57889999999887664
Q ss_pred cccC----CCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCC--CHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHhc
Q psy7780 217 ALIR----PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV--NLQELIMAKDDLSGADIK---AICTEAGLMALRER 287 (317)
Q Consensus 217 al~r----pgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~--~~~~ia~~t~g~s~~dl~---~l~~~A~~~a~~~~ 287 (317)
.|-| -+.-...+.|++++.++..+|++..+......... .++-.|+...+.|| |++ .+|+.|...+-.+.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEK 383 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHH
Confidence 4421 12224689999999999999999998876654333 35666777888776 555 45787877776554
Q ss_pred C----------------CCcCHHHHHHHHHHHHh
Q psy7780 288 R----------------MKVTNEDFKKSKESVLY 305 (317)
Q Consensus 288 ~----------------~~it~~d~~~al~~v~~ 305 (317)
+ ..|..+++-.++.++-.
T Consensus 384 r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 384 RKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred hhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 3 34557777777776643
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=87.70 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=32.3
Q ss_pred CCeEEEEEcCC------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC
Q psy7780 200 GDVKVIMATNR------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL 251 (317)
Q Consensus 200 ~~v~vI~tTN~------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~ 251 (317)
-.-+||++||| |..+|..|+. |+ ..|...+++.++.++|++...+...+
T Consensus 306 ~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~E~v 366 (398)
T PF06068_consen 306 LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKEEDV 366 (398)
T ss_dssp T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHHCT-
T ss_pred CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhhhcC
Confidence 44678888984 4568889999 98 58889999999999999999865443
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-07 Score=93.28 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=99.5
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCCch--------HHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGDGP--------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~~~--------~~l~~~f~~a~~~~P~Ii~i 142 (317)
|+|+.|.+||||++ ++.+. .+.+|+.++|..+-.. .+|..+ ..-..+|+.|. ...|||
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfL 313 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFL 313 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC---CceEEe
Confidence 89999999999999 44433 4569999999865321 122110 00112344443 358999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--C-----
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--T----- 213 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~----- 213 (317)
|||+.+-.. .+.-|..+|.+-. .+.+. ...+-++.+|++||..- .
T Consensus 314 deI~~Lp~~-----------~Q~~Ll~~L~~~~~~r~g~~---------------~~~~~dvRiIaat~~~l~~~v~~g~ 367 (526)
T TIGR02329 314 DEIGEMPLP-----------LQTRLLRVLEEREVVRVGGT---------------EPVPVDVRVVAATHCALTTAVQQGR 367 (526)
T ss_pred cChHhCCHH-----------HHHHHHHHHhcCcEEecCCC---------------ceeeecceEEeccCCCHHHHhhhcc
Confidence 999998432 3555555654411 11000 01124578999997742 1
Q ss_pred CCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCCCC--cCCCHHHHHH--------hCCCC--CHHHHHHHHHH
Q psy7780 214 LDPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMTLA--EDVNLQELIM--------AKDDL--SGADIKAICTE 278 (317)
Q Consensus 214 Ld~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~~~--~~~~~~~ia~--------~t~g~--s~~dl~~l~~~ 278 (317)
+.+.|.. |+. ..|++|+.. .++...+++.++.+.... ...+-+.+.. ....+ +-++|++++++
T Consensus 368 fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier 445 (526)
T TIGR02329 368 FRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVER 445 (526)
T ss_pred hhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2223333 443 466676663 255556666766543211 1122222111 11222 56788899888
Q ss_pred HHHHHHHhcCCCcCHHHHH
Q psy7780 279 AGLMALRERRMKVTNEDFK 297 (317)
Q Consensus 279 A~~~a~~~~~~~it~~d~~ 297 (317)
++..+.......|+.+|+.
T Consensus 446 ~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 446 LALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHhcccCCCCccCHHHhh
Confidence 8765432223456666654
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >KOG2035|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=9e-07 Score=79.55 Aligned_cols=175 Identities=14% Similarity=0.262 Sum_probs=108.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC-C--c--------------------------eEEEEechhhhhhhcCCchH-HHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-S--A--------------------------TFLRVVGSELIQKYLGDGPK-LVREL 128 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-~--~--------------------------~~~~v~~s~l~~~~~g~~~~-~l~~~ 128 (317)
+.+||||+|+||.| ++-+++ | . ..+++++|+ .|.-.+ -++++
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQel 110 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQEL 110 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHH
Confidence 57899999999998 666665 1 1 112333333 333322 35555
Q ss_pred HHHHHhhCC---------ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 129 FRVAEEHAP---------SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 129 f~~a~~~~P---------~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
.....+.+| -+++|-|+|.|... .|..|..-++. +.
T Consensus 111 lKevAQt~qie~~~qr~fKvvvi~ead~LT~d-----------AQ~aLRRTMEk---Ys--------------------- 155 (351)
T KOG2035|consen 111 LKEVAQTQQIETQGQRPFKVVVINEADELTRD-----------AQHALRRTMEK---YS--------------------- 155 (351)
T ss_pred HHHHHhhcchhhccccceEEEEEechHhhhHH-----------HHHHHHHHHHH---Hh---------------------
Confidence 555433332 48999999998432 23333333332 21
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHH--
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC-- 276 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~-- 276 (317)
+++.+|..+|....+-+++++ |+ .-|.+|.|+.++...+++..+.+.++. +..-+..+|+.+. ++++..+
T Consensus 156 ~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~----~nLRrAllm 228 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN----RNLRRALLM 228 (351)
T ss_pred cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc----ccHHHHHHH
Confidence 557799999999999999999 88 479999999999999999998876655 3334566777654 4555332
Q ss_pred HHHHHHH---HHhcCCCcCHHHHHHHHHHH
Q psy7780 277 TEAGLMA---LRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 277 ~~A~~~a---~~~~~~~it~~d~~~al~~v 303 (317)
-+|+... ...+...+..-|++..+.++
T Consensus 229 lE~~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 229 LEAVRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HHHHHhccccccccCCCCCCccHHHHHHHH
Confidence 2332221 11122445555666655544
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-07 Score=93.28 Aligned_cols=186 Identities=19% Similarity=0.211 Sum_probs=96.0
Q ss_pred hHHHhhhcCCCchh---hhhhc-----------CCceEEEEechhhhhh-----hcCCchH--------HHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ-----------TSATFLRVVGSELIQK-----YLGDGPK--------LVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~-----------~~~~~~~v~~s~l~~~-----~~g~~~~--------~l~~~f~~a~~ 134 (317)
|+|+.|.+||||++ ++-+. .+.+|+.++|+.+-.. .+|..+. .-.-+|+.|.
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~- 322 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH- 322 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccC-
Confidence 89999999999999 44433 4579999999875321 1221110 0112444443
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-- 212 (317)
...||||||+.+-.. .+..|..+|++-.- ... ......+-++.+|++||..-
T Consensus 323 --gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~~-~r~------------G~~~~~~~dvRiIaat~~~L~~ 376 (538)
T PRK15424 323 --GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKEV-TRV------------GGHQPVPVDVRVISATHCDLEE 376 (538)
T ss_pred --CCEEEEcChHhCCHH-----------HHHHHHhhhhcCeE-Eec------------CCCceeccceEEEEecCCCHHH
Confidence 358999999998433 35555555543110 000 00011124678999998741
Q ss_pred C-----CCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCC--CCcCCCHHHH------HH--hCCCC--CHHHH
Q psy7780 213 T-----LDPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMT--LAEDVNLQEL------IM--AKDDL--SGADI 272 (317)
Q Consensus 213 ~-----Ld~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~--~~~~~~~~~i------a~--~t~g~--s~~dl 272 (317)
. +.+.|.. |+. ..|++|+.. .++...+++.++++.. ......-+.+ .. ....+ +-++|
T Consensus 377 ~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 377 DVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 1 1222333 332 355565552 2455556676665421 1111111111 01 11222 67889
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHH
Q psy7780 273 KAICTEAGLMALRERRMKVTNEDF 296 (317)
Q Consensus 273 ~~l~~~A~~~a~~~~~~~it~~d~ 296 (317)
++++++++..+.......++.+++
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHh
Confidence 999998877542221234444443
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-07 Score=85.75 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=95.2
Q ss_pred hhHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCch-------HHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGP-------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~-------~~l~~~f~~a~~~~P~Ii~i 142 (317)
.|+|+.|.+||||++ ++... .+.+|+.|+|+.+-... +|... ..-...|+.| ....|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 389999999999999 33332 34699999998653211 11100 0001123333 2469999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld 215 (317)
||||.+-. ..+..|..+++.-. +... . .....+.++.+|++||.. ..+.
T Consensus 100 dei~~L~~-----------~~Q~~Ll~~l~~~~-~~~~-g-----------~~~~~~~~~RiI~at~~~l~~~~~~g~fr 155 (329)
T TIGR02974 100 DELATASL-----------LVQEKLLRVIEYGE-FERV-G-----------GSQTLQVDVRLVCATNADLPALAAEGRFR 155 (329)
T ss_pred CChHhCCH-----------HHHHHHHHHHHcCc-EEec-C-----------CCceeccceEEEEechhhHHHHhhcCchH
Confidence 99999843 23555555554311 1000 0 000112568899999863 2355
Q ss_pred ccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC--cCCCHH---HHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA--EDVNLQ---ELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~--~~~~~~---~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
+.|.. ||. ..|.+|+.. .++...+++.++.+. +.. ..++-+ .+....=--+-++|++++++|+..+
T Consensus 156 ~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 156 ADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 66666 773 467776664 355666666665432 111 122222 2222221125678888888877654
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-07 Score=90.70 Aligned_cols=158 Identities=13% Similarity=0.199 Sum_probs=87.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE-Eechh-------------hhhh--hcCCchHHHHHHHHHHHh---------
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR-VVGSE-------------LIQK--YLGDGPKLVRELFRVAEE--------- 134 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~-v~~s~-------------l~~~--~~g~~~~~l~~~f~~a~~--------- 134 (317)
.+|+||||||||+ ++|.+++..+++ ++... +... ........+++++..|..
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~ 192 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDL 192 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhccccccc
Confidence 6789999999999 889888865433 21110 0000 011223455666666652
Q ss_pred -hCCceEeecccccccccccCCCCCchhHHHHHHHHHHH-HhcCCCcccccccchhhhcccccccCCCCeEEEEEcC-CC
Q psy7780 135 -HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLN-QLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN-RI 211 (317)
Q Consensus 135 -~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~-~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN-~~ 211 (317)
....||||||++.++..- . +.+..+|. .... . +.+.+|+++| .+
T Consensus 193 ~~~~~IILIDEiPn~~~r~-------~----~~lq~lLr~~~~e---~-------------------~~~pLI~I~TE~~ 239 (637)
T TIGR00602 193 MTDKKIILVEDLPNQFYRD-------T----RALHEILRWKYVS---I-------------------GRCPLVFIITESL 239 (637)
T ss_pred CCceeEEEeecchhhchhh-------H----HHHHHHHHHHhhc---C-------------------CCceEEEEecCCc
Confidence 235699999999876321 1 12223333 1111 1 3333444443 12
Q ss_pred C--------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC--Cc------CCCHHHHHHhCCCCCH
Q psy7780 212 E--------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL--AE------DVNLQELIMAKDDLSG 269 (317)
Q Consensus 212 ~--------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~--~~------~~~~~~ia~~t~g~s~ 269 (317)
. .|.++++..-|+ .+|.|++.+...-.+.|+..+..... .. ...+..|+.. +.
T Consensus 240 ~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~----s~ 314 (637)
T TIGR00602 240 EGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG----CS 314 (637)
T ss_pred cccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh----CC
Confidence 1 133678742244 37999999999977777777654211 11 1235556654 45
Q ss_pred HHHHHHHHH
Q psy7780 270 ADIKAICTE 278 (317)
Q Consensus 270 ~dl~~l~~~ 278 (317)
+|++..++.
T Consensus 315 GDiRsAIn~ 323 (637)
T TIGR00602 315 GDIRSAINS 323 (637)
T ss_pred ChHHHHHHH
Confidence 588877663
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-07 Score=90.26 Aligned_cols=173 Identities=23% Similarity=0.229 Sum_probs=99.6
Q ss_pred hHHHhhhcCCCchh------hhhhc-CCceEEEEechhhhhh-------------hcCCchHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL------AVANQ-TSATFLRVVGSELIQK-------------YLGDGPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~-~~~~~~~v~~s~l~~~-------------~~g~~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
|+|+.|.+||||++ +.+.. .+.||+.+||+.+-.. |.| ....-.-+|+.|.. -++|
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLf 178 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLF 178 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecCC---CEEe
Confidence 99999999999998 44455 5789999999886432 222 11122234444433 4999
Q ss_pred ecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--CCCCCc--c
Q psy7780 142 IDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR--IETLDP--A 217 (317)
Q Consensus 142 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~--~~~Ld~--a 217 (317)
+|||..+-+. .+..+..+|+.-. .... +.....+.+|.+|+|||- .+.+-. .
T Consensus 179 LDEI~~LP~~-----------~Q~kLl~~le~g~--~~rv-----------G~~~~~~~dVRli~AT~~~l~~~~~~g~d 234 (403)
T COG1221 179 LDEIHRLPPE-----------GQEKLLRVLEEGE--YRRV-----------GGSQPRPVDVRLICATTEDLEEAVLAGAD 234 (403)
T ss_pred hhhhhhCCHh-----------HHHHHHHHHHcCc--eEec-----------CCCCCcCCCceeeeccccCHHHHHHhhcc
Confidence 9999988432 2444445554311 1000 011122367999999974 222222 3
Q ss_pred ccCCCcceeEEEeCCCC--HHHHHHHHHHHhc----CCCCCcCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHH
Q psy7780 218 LIRPGRIDRKIEFPLPD--EKTKRRIFNIHTS----RMTLAEDVNLQELIMA-----KDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~--~~~r~~Il~~~l~----~~~~~~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~ 284 (317)
+.+ -|+...|.+|+.. .+++..+++.+++ +.+.....+..+..+. ..| +-+++++++..++..+.
T Consensus 235 l~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 235 LTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred hhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 332 1566677877763 3555556666554 3333322222222222 244 67899999999988774
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-07 Score=89.20 Aligned_cols=184 Identities=21% Similarity=0.290 Sum_probs=101.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCchHH-------HHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGPKL-------VRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~~~-------l~~~f~~a~~~~P~Ii~iD 143 (317)
|+|+.|++||||++ ++.+. .+.+|+.++|+.+-... +|..... -...|+.| ...+||||
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ld 297 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLD 297 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEe
Confidence 89999999999999 55544 35699999998753221 1111000 00012222 24699999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~ 216 (317)
|||.+... .+..|..+++.-. +...... ...+.++.+|++|+..- .+.+
T Consensus 298 ei~~L~~~-----------~Q~~Ll~~l~~~~-~~~~~~~------------~~~~~~~riI~~s~~~l~~~~~~~~f~~ 353 (534)
T TIGR01817 298 EIGEISPA-----------FQAKLLRVLQEGE-FERVGGN------------RTLKVDVRLVAATNRDLEEAVAKGEFRA 353 (534)
T ss_pred chhhCCHH-----------HHHHHHHHHhcCc-EEECCCC------------ceEeecEEEEEeCCCCHHHHHHcCCCCH
Confidence 99998432 3555555554311 1100000 00013578999987631 2333
Q ss_pred cccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCC----CCcCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 217 ALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMT----LAEDVN---LQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 217 al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~----~~~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
.|.. |+. ..|.+|+.. .++...|++.++.+.. .....+ +..+....=--+-++|++++++|+..+
T Consensus 354 ~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~--- 428 (534)
T TIGR01817 354 DLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS--- 428 (534)
T ss_pred HHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---
Confidence 4444 443 467777664 4666677777765421 111222 222333221126778888888877543
Q ss_pred cCCCcCHHHHH
Q psy7780 287 RRMKVTNEDFK 297 (317)
Q Consensus 287 ~~~~it~~d~~ 297 (317)
....|+.+|+.
T Consensus 429 ~~~~I~~~~l~ 439 (534)
T TIGR01817 429 RSGTITRSDFS 439 (534)
T ss_pred CCCcccHHHCc
Confidence 34578888874
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-07 Score=85.30 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..+|++.+.+... .--|++||++|.+... ..+ .||..++.-.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaN---aLLKtLEEPp------------------- 160 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-----------AAN---ALLKTLEEPP------------------- 160 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHH-----------HHH---HHHHHhcCCC-------------------
Confidence 34667666654322 2359999999988432 233 4444444321
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~ 245 (317)
.++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 161 --~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 --PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred --cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 678899999999999999999 99 58999999999999888764
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-07 Score=84.08 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=94.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhh-----hhcCCch-------HHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQ-----KYLGDGP-------KLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~-----~~~g~~~-------~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|+|+.|.+||||++ ++... .+.+|+.++|+.+-. ..+|... ..-...|+.| ....||||
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~ 107 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLD 107 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEEeC
Confidence 89999999999999 33322 346999999987532 1122110 0001123333 24689999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~ 216 (317)
|+|.+... .+..|..+++.-. +..... .-..+.++.+|+||+.. ..+.+
T Consensus 108 ~i~~L~~~-----------~Q~~L~~~l~~~~-~~~~g~------------~~~~~~~~RiI~~s~~~l~~l~~~g~f~~ 163 (326)
T PRK11608 108 ELATAPML-----------VQEKLLRVIEYGE-LERVGG------------SQPLQVNVRLVCATNADLPAMVAEGKFRA 163 (326)
T ss_pred ChhhCCHH-----------HHHHHHHHHhcCc-EEeCCC------------CceeeccEEEEEeCchhHHHHHHcCCchH
Confidence 99998532 3555555554311 100000 00111368899998763 34667
Q ss_pred cccCCCcc-eeEEEeCCCC--HHHHHHHHHHHhcCC----CCC--cCCCHHHHHHh-CCCC--CHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRI-DRKIEFPLPD--EKTKRRIFNIHTSRM----TLA--EDVNLQELIMA-KDDL--SGADIKAICTEAGLM 282 (317)
Q Consensus 217 al~rpgRf-~~~I~~~~P~--~~~r~~Il~~~l~~~----~~~--~~~~~~~ia~~-t~g~--s~~dl~~l~~~A~~~ 282 (317)
.|.. || ...|.+|+.. .++...+++.++.+. +.. ..++-+.+... ...+ +-++|++++++|+..
T Consensus 164 dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 164 DLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 7777 77 4567777663 255566666665432 111 12333333222 1222 567888888887764
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-07 Score=83.32 Aligned_cols=125 Identities=16% Similarity=0.215 Sum_probs=73.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhc----CCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYL----GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~----g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+.+|+|+||||||+ |+|+++ +.+++.++.++++..+. +.......++++... ...+|+|||+.....
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~~- 192 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAERD- 192 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCCC-
Confidence 58899999999999 888875 78899999988776532 111122223333332 236999999864211
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-CC----CCccccCCCcc--
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-ET----LDPALIRPGRI-- 224 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-~~----Ld~al~rpgRf-- 224 (317)
....+..+.++++..- . .+..+|.|||.+ +. ++..+.+ |+
T Consensus 193 --------t~~~~~~l~~iin~r~---~--------------------~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e 239 (268)
T PRK08116 193 --------TEWAREKVYNIIDSRY---R--------------------KGLPTIVTTNLSLEELKNQYGKRIYD--RILE 239 (268)
T ss_pred --------CHHHHHHHHHHHHHHH---H--------------------CCCCEEEECCCCHHHHHHHHhHHHHH--HHHH
Confidence 1122334444544321 1 223388888874 33 4667777 74
Q ss_pred -eeEEEeCCCCHHHHHHHHHH
Q psy7780 225 -DRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 225 -~~~I~~~~P~~~~r~~Il~~ 244 (317)
-..|.++-|+. |..+.+.
T Consensus 240 ~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 240 MCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred cCEEEEeeCcCh--hHHHHHH
Confidence 23466666653 4444443
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=87.58 Aligned_cols=187 Identities=16% Similarity=0.230 Sum_probs=97.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhh-----hhhcCCc----hHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELI-----QKYLGDG----PKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~-----~~~~g~~----~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|+||+|.+||||++ ++.+.. +.+|+.++|..+- +..+|.. ...-...|+.| ....|||||||
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~ 426 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVE 426 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChh
Confidence 89999999999999 555443 4699999997652 2223321 00000123222 24699999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCcccc
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDPALI 219 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~al~ 219 (317)
.+-.. .+..|..+|+.=. +... . .....+-++.+|+|||..- .+.+.|.
T Consensus 427 ~l~~~-----------~Q~~Ll~~l~~~~-~~~~-~-----------~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~ 482 (638)
T PRK11388 427 YLSPE-----------LQSALLQVLKTGV-ITRL-D-----------SRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482 (638)
T ss_pred hCCHH-----------HHHHHHHHHhcCc-EEeC-C-----------CCceEEeeEEEEEeccCCHHHHHhcCCChHHHh
Confidence 88432 3555555554210 0000 0 0000113578999998642 1222232
Q ss_pred CCCcc-eeEEEeCCCCH--HHHHHHHHHHhcCC----CCCcCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 220 RPGRI-DRKIEFPLPDE--KTKRRIFNIHTSRM----TLAEDVN---LQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 220 rpgRf-~~~I~~~~P~~--~~r~~Il~~~l~~~----~~~~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
. |+ ...|.+|+..+ ++...+++.++.+. .....++ +..+....=--+-++|+++++.|...+ ...
T Consensus 483 ~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~ 557 (638)
T PRK11388 483 Y--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DNG 557 (638)
T ss_pred h--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCC
Confidence 2 33 34566665532 44555666665432 1111122 222333221125678888888776543 233
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+|+...+
T Consensus 558 ~i~~~~lp~~~ 568 (638)
T PRK11388 558 RIRLSDLPEHL 568 (638)
T ss_pred eecHHHCchhh
Confidence 56666664443
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=81.71 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=78.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|+||++ ++|+.+-+ .+..+... ++ .-+-..++++.+.+..
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~ 104 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSK 104 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhh
Confidence 56899999999998 55554422 12222211 00 0123456666555432
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
...-|++|||+|.+... .++ .||..++... +++++|.+|+.
T Consensus 105 ~~~~~~~kvviI~~a~~~~~~-----------a~N---aLLK~LEEPp---------------------~~~~~Il~t~~ 149 (329)
T PRK08058 105 SGVESNKKVYIIEHADKMTAS-----------AAN---SLLKFLEEPS---------------------GGTTAILLTEN 149 (329)
T ss_pred CCcccCceEEEeehHhhhCHH-----------HHH---HHHHHhcCCC---------------------CCceEEEEeCC
Confidence 22359999999987422 233 4454444322 56778889989
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
+..|.|++++ |+. .++|++|+.++..++++.
T Consensus 150 ~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 150 KHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 9999999999 994 899999999888777764
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-06 Score=79.73 Aligned_cols=145 Identities=21% Similarity=0.331 Sum_probs=91.5
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-CCCCc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-ETLDP 216 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-~~Ld~ 216 (317)
.|+++||+..|-. .++.+|...+.+ |. + .+-.++-+...|.++++|+|+|.- ..|=|
T Consensus 146 GIlYvDEvnlL~d-----------~lvd~LLd~aae--G~-n--------~vereGisi~hpa~fvligTmNPEeGeLrp 203 (423)
T COG1239 146 GILYVDEVNLLDD-----------HLVDALLDVAAE--GV-N--------DVEREGISIRHPARFLLIGTMNPEEGELRP 203 (423)
T ss_pred CEEEEeccccccH-----------HHHHHHHHHHHh--CC-c--------eeeeCceeeccCccEEEEeecCccccccch
Confidence 5999999988742 244555555443 10 0 122344455667899999999985 45889
Q ss_pred cccCCCcceeEEEeCCC-CHHHHHHHHHHHhcCCCCCcCCCH-------------------------------HHHHHh-
Q psy7780 217 ALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTSRMTLAEDVNL-------------------------------QELIMA- 263 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~~~~~~~~~~~-------------------------------~~ia~~- 263 (317)
.|+. ||...|.+..| +.++|.+|.++.+.-. ..++.-+ ..++..
T Consensus 204 qLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~ 280 (423)
T COG1239 204 QLLD--RFGLEVDTHYPLDLEERVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELC 280 (423)
T ss_pred hhHh--hhcceeeccCCCCHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHH
Confidence 9999 99999999887 6799999998765421 1111000 111111
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 264 ----KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 264 ----t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
..| .-+|+ .+.+.|...|.-.++..++.+|+.+|++-.+.++..
T Consensus 281 ~~~~v~g-~radi-~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~ 328 (423)
T COG1239 281 ARLAVDG-HRADI-VVVRAAKALAALRGRTEVEEEDIREAAELALLHRRR 328 (423)
T ss_pred HHhccCC-Cchhh-HHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhc
Confidence 011 11122 233334455666788999999999999998877654
|
|
| >KOG0990|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.9e-06 Score=76.88 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=83.3
Q ss_pred eEeechh--hHHHhhhcCCCchh---hhhhcCCce------EEEEechhhhhhhcCCc-hHHHHHHHHHHHh-------h
Q psy7780 75 TFLRVVG--SELIQKYLGDGPKL---AVANQTSAT------FLRVVGSELIQKYLGDG-PKLVRELFRVAEE-------H 135 (317)
Q Consensus 75 ~~~~i~g--~~Ll~G~pGtGKT~---aiA~~~~~~------~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~-------~ 135 (317)
.|.+.++ +.|||||||||||+ +.|..+-.+ +..+++|+ -.|.. .+.=...|..++. .
T Consensus 55 ~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd----~rgid~vr~qi~~fast~~~~~fst~~ 130 (360)
T KOG0990|consen 55 RYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD----DRGIDPVRQQIHLFASTQQPTTYSTHA 130 (360)
T ss_pred HhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC----ccCCcchHHHHHHHHhhccceeccccC
Confidence 3444444 78999999999998 777766543 11122221 11211 2233345666663 2
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
.+-.|++||.|+.... .|..|.. .+..+. .++.+...+|++..+.
T Consensus 131 ~fKlvILDEADaMT~~-----------AQnALRR---viek~t---------------------~n~rF~ii~n~~~ki~ 175 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-----------AQNALRR---VIEKYT---------------------ANTRFATISNPPQKIH 175 (360)
T ss_pred ceeEEEecchhHhhHH-----------HHHHHHH---HHHHhc---------------------cceEEEEeccChhhcC
Confidence 5678999999987432 2333333 222222 4456778889999999
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 249 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~ 249 (317)
|++++ ||. ...|.+.+.++-...+..+...-
T Consensus 176 pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 176 PAQQS--RCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred chhhc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 99999 996 66777777777777776665543
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-07 Score=82.97 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=28.8
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----- 212 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----- 212 (317)
.|||+||+-.+- .+++..++.-++.-... +.....+...|.++++|+|+|.-.
T Consensus 108 GVLflDE~~ef~--------------~~vld~Lr~ple~g~v~--------i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~ 165 (206)
T PF01078_consen 108 GVLFLDELNEFD--------------RSVLDALRQPLEDGEVT--------ISRAGGSVTYPARFLLVAAMNPCPCGYYG 165 (206)
T ss_dssp SEEEECETTTS---------------HHHHHHHHHHHHHSBEE--------EEETTEEEEEB--EEEEEEE-S-------
T ss_pred CEEEechhhhcC--------------HHHHHHHHHHHHCCeEE--------EEECCceEEEecccEEEEEeccccccccc
Confidence 599999997762 23444444444332211 223445567778999999998621
Q ss_pred ------------------CCCccccCCCcceeEEEeCCCCHH
Q psy7780 213 ------------------TLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 213 ------------------~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
.|.-.|+. |||..+.++..+.+
T Consensus 166 ~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 166 DPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp ------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccC
Confidence 14445666 77766666655443
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=82.43 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=85.3
Q ss_pred eechhhHHHhhhcCCCchh---hhhhcCCc-------------------------eEEEEechhhhhhhcC-----CchH
Q psy7780 77 LRVVGSELIQKYLGDGPKL---AVANQTSA-------------------------TFLRVVGSELIQKYLG-----DGPK 123 (317)
Q Consensus 77 ~~i~g~~Ll~G~pGtGKT~---aiA~~~~~-------------------------~~~~v~~s~l~~~~~g-----~~~~ 123 (317)
..+...+||+||+|+|||+ ++|+.+.+ .|+.++...-. ...| -+-.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 3555568999999999998 44444321 35555432100 0011 2355
Q ss_pred HHHHHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 124 LVRELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 124 ~l~~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
.+|++.+.+... ..-|+++|+++.+-.. .+..+...+++..
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-----------a~naLLk~LEep~------------------------ 141 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNLQ-----------AANSLLKVLEEPP------------------------ 141 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCHH-----------HHHHHHHHHHhCc------------------------
Confidence 678877777542 2358999999988432 2455555655521
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
.++.+|.+|++++.+.+.+++ |+. .+.|++|+.++..+.+..
T Consensus 142 ~~~~~Ilvth~~~~ll~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 142 PQVVFLLVSHAADKVLPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCCEEEEEeCChHhChHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 335577899999999999999 994 889999999988877754
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.3e-06 Score=77.47 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..||++.+.+.... --|++||++|.+... ..+.|...|++ -.
T Consensus 95 idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---Pp------------------- 141 (319)
T PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAINRA-----------ACNALLKTLEE---PS------------------- 141 (319)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHH-----------HHHHHHHHhhC---CC-------------------
Confidence 446777766554332 259999999998432 23444445544 21
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 269 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~ 269 (317)
.++++|.+|+.++.|.|.+++ |+. .+.|+.|+.++-.+.+... +.+ ..+...++..+.|-.+
T Consensus 142 --~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 142 --PGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred --CCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 567899999999999999999 995 8899999998888777642 222 1123345556666433
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=79.52 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=82.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|+||++ ++|+.+-+ .|+.+...+ ++ ..+-..+|++-+.+..
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKVSQ 101 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHHhh
Confidence 57899999999998 44444422 133332110 01 1234567776555543
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
..--|++||++|.+... ..+.|...|++ - |.++++|.+|+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~-----------AaNaLLKtLEE---P---------------------p~~~~fiL~t~~ 146 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA-----------AANALLKTLEE---P---------------------RPNTYFLLQADL 146 (325)
T ss_pred ccccCCceEEEEechhhhCHH-----------HHHHHHHHhcC---C---------------------CCCeEEEEEECC
Confidence 22359999999988432 23445555544 2 267889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~ 245 (317)
++.|.|.+++ |+. .+.|++|+.++..+.+...
T Consensus 147 ~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 147 SAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 9999999999 995 8899999999888888764
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=80.92 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=81.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|+||++ ++|..+-+ .++.+.... -+ ...+-..+|++-+.+..
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GK--SSLGVDAVREVTEKLYE 102 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cc--ccCCHHHHHHHHHHHhh
Confidence 57899999999998 44444422 122232110 00 01234466666665543
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
...-|++||++|.+... ..+.|...|++ - |.+.++|.+|++
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---P---------------------p~~t~fiL~t~~ 147 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDA-----------AANALLKTLEE---P---------------------PENTWFFLACRE 147 (334)
T ss_pred ccccCCceEEEEcchHhhCHH-----------HHHHHHHHhcC---C---------------------CCCeEEEEEECC
Confidence 33459999999998532 23445455544 2 167889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
++.|.|.+++ |+. .+.|++|+.++..+.+..
T Consensus 148 ~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 148 PARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred hhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 9999999999 996 689999999888887764
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.9e-06 Score=83.05 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=98.0
Q ss_pred CCceEeechh--------------------hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCC
Q psy7780 72 TSATFLRVVG--------------------SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGD 120 (317)
Q Consensus 72 ~~~~~~~i~g--------------------~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~ 120 (317)
...+|+++.| |+|++|.+||||++ ++... .+.+|+.++|+.+-.. .+|.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~ 278 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGH 278 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCC
Confidence 4567777777 89999999999999 33222 2469999999875331 1221
Q ss_pred ch-------HHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccc
Q psy7780 121 GP-------KLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSL 193 (317)
Q Consensus 121 ~~-------~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~ 193 (317)
.. ..-..+|+.|. ...|||||||.+... .+..|..+++.-. +.....
T Consensus 279 ~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~-~~~~g~----------- 332 (520)
T PRK10820 279 APGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR-----------MQAKLLRFLNDGT-FRRVGE----------- 332 (520)
T ss_pred CCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH-----------HHHHHHHHHhcCC-cccCCC-----------
Confidence 11 00112344332 368999999998432 3555556654310 111000
Q ss_pred ccccCCCCeEEEEEcCCCC-------CCCccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhcC----CCCC-cCCCHH
Q psy7780 194 TLIYLPGDVKVIMATNRIE-------TLDPALIRPGRID-RKIEFPLPDE--KTKRRIFNIHTSR----MTLA-EDVNLQ 258 (317)
Q Consensus 194 ~~~~~~~~v~vI~tTN~~~-------~Ld~al~rpgRf~-~~I~~~~P~~--~~r~~Il~~~l~~----~~~~-~~~~~~ 258 (317)
......++.+|++|+..- .+.+.|.. |+. ..|.+|+..+ +....+++.++.+ .+.. .....+
T Consensus 333 -~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 -DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred -CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 000114678999887642 24455665 654 4556665532 3444455555443 2211 123333
Q ss_pred HHHHhC-CCC--CHHHHHHHHHHHHHH
Q psy7780 259 ELIMAK-DDL--SGADIKAICTEAGLM 282 (317)
Q Consensus 259 ~ia~~t-~g~--s~~dl~~l~~~A~~~ 282 (317)
.+.... ..+ +-++|++++.+|...
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 333221 222 567788888877654
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=70.90 Aligned_cols=154 Identities=18% Similarity=0.264 Sum_probs=100.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC-CceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~ 154 (317)
.+|++|.-|||||+ |+-++. +..+++|+-.++.. +-.+++..+... +-|||+|++- +.
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS------Fe 151 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS------FE 151 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC------CC
Confidence 78999999999999 555554 45688888877643 344555554432 4799999863 11
Q ss_pred CCCCchhHHHHHHHHHHHHhcC-CCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-----------------
Q psy7780 155 SNSGGEREIQRTMLELLNQLDG-FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP----------------- 216 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~----------------- 216 (317)
.+.. .-+.|. ..+|| +... |.+|++-+|+||-..|++
T Consensus 152 ~gd~----~yK~LK---s~LeG~ve~r------------------P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~ea 206 (287)
T COG2607 152 EGDD----AYKALK---SALEGGVEGR------------------PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEA 206 (287)
T ss_pred CCch----HHHHHH---HHhcCCcccC------------------CCeEEEEEecCCcccccHhhhhCCCcccccChhHH
Confidence 1111 123333 33454 3322 378999999999877763
Q ss_pred -----cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCC-CHHHH----HHhCCCCCHHHHHHHHH
Q psy7780 217 -----ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV-NLQEL----IMAKDDLSGADIKAICT 277 (317)
Q Consensus 217 -----al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~-~~~~i----a~~t~g~s~~dl~~l~~ 277 (317)
++.. ||...+.|++++.++-..|+..+.++.+++-+. .+..- |..-.|-||+--.+.++
T Consensus 207 veEKlSlSD--RFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 207 VEEKLSLSD--RFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred HHHhhchhh--hcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHH
Confidence 2344 999999999999999999999999888776421 12111 22234556665555544
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=87.40 Aligned_cols=39 Identities=21% Similarity=0.038 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.|.+.|+++++-|-..|--+-+..|+.+|++.|++-+..
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~ 806 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKS 806 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHH
Confidence 679999999998877777777899999999999987654
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-06 Score=78.35 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=46.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcC---CchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLG---DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g---~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+|+||||||+ ++|+++ +..++.++.++++....+ ........+++... ...+|+|||++...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 67899999999998 888777 778899999888764322 11122334444433 35799999998753
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.9e-06 Score=74.32 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=77.3
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCch
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE 160 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~ 160 (317)
.++||+|||||. ++|+.+|.+++..+|++-++ ...+..+|.=+... -+-++|||++.+-
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~----------- 97 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS----------- 97 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS-----------
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh-----------
Confidence 368999999998 99999999999999998654 56777788655544 3899999999873
Q ss_pred hHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC----CCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 161 REIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR----IETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 161 ~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~----~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
.++.+++.+.+..+...-... ............+..+.-++.|.|. -..||+.|+. -| +-+.+-.||.+
T Consensus 98 ~~vLS~i~~~i~~i~~al~~~----~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 98 EEVLSVISQQIQSIQDALRAK----QKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----SSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred HHHHHHHHHHHHHHHHhhccc----ccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 233445544444332110000 0112223333444455666667763 3569999986 55 68999999887
Q ss_pred HHHHHHH
Q psy7780 237 TKRRIFN 243 (317)
Q Consensus 237 ~r~~Il~ 243 (317)
...+++-
T Consensus 171 ~I~ei~L 177 (231)
T PF12774_consen 171 LIAEILL 177 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-06 Score=79.52 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=53.1
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcC-CchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
..+|+||||||||. ++|++ .|..++.++..+++..... .......+.++... .+.+|+|||++.+....
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~~-- 183 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKDQ-- 183 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCCH--
Confidence 57899999999998 66643 4778888898888875421 11123334444433 35799999998764321
Q ss_pred CCCCchhHHHHHHHHHHHHh
Q psy7780 155 SNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~l 174 (317)
.....+.++++..
T Consensus 184 -------~~~~~Lf~lin~R 196 (269)
T PRK08181 184 -------AETSVLFELISAR 196 (269)
T ss_pred -------HHHHHHHHHHHHH
Confidence 2244566666653
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-06 Score=84.09 Aligned_cols=179 Identities=20% Similarity=0.301 Sum_probs=97.6
Q ss_pred CCceEeechh--------------------hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh---------
Q psy7780 72 TSATFLRVVG--------------------SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK--------- 116 (317)
Q Consensus 72 ~~~~~~~i~g--------------------~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~--------- 116 (317)
...+|++|.| ++|+.|-+||||.+ ++-+.. +-||+.+||..+-..
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGy 319 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGY 319 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCc
Confidence 4468999999 88999999999999 444444 569999999653221
Q ss_pred ----hcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcc
Q psy7780 117 ----YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSS 192 (317)
Q Consensus 117 ----~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~ 192 (317)
|.|....--.-+|+.|.. .-||||||..+- -.+|.-|...|.+-. +..-
T Consensus 320 e~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp-----------l~LQaKLLRVLQEke-i~rv------------ 372 (560)
T COG3829 320 EKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP-----------LPLQAKLLRVLQEKE-IERV------------ 372 (560)
T ss_pred CCccccccccCCCCcceeeccC---CeEEehhhccCC-----------HHHHHHHHHHHhhce-EEec------------
Confidence 122211112234555543 489999998763 234555555555411 1100
Q ss_pred cccccCCCCeEEEEEcCCCCCCCccccCCCcce-------eEEEeCCCCH----HHHHHHHHHHhcC----CCCC-cCCC
Q psy7780 193 LTLIYLPGDVKVIMATNRIETLDPALIRPGRID-------RKIEFPLPDE----KTKRRIFNIHTSR----MTLA-EDVN 256 (317)
Q Consensus 193 ~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~-------~~I~~~~P~~----~~r~~Il~~~l~~----~~~~-~~~~ 256 (317)
+..-..+-+|.+|+|||+. |-.++ .-|+|. .++.+..|-. ++...+...++.+ ++.. ..+.
T Consensus 373 G~t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 1111122579999999982 22222 224442 1333444433 3333344444443 2222 2222
Q ss_pred HHH---HHHh-CCCCCHHHHHHHHHHHHH
Q psy7780 257 LQE---LIMA-KDDLSGADIKAICTEAGL 281 (317)
Q Consensus 257 ~~~---ia~~-t~g~s~~dl~~l~~~A~~ 281 (317)
-+. +.+. =.| +-++|.|++.+|..
T Consensus 450 ~~a~~~L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 450 PDALALLLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 222 2222 234 67899999998886
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-06 Score=85.58 Aligned_cols=171 Identities=20% Similarity=0.281 Sum_probs=90.2
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCC--------chHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGD--------GPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~--------~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
|+|+.|++|||||+ ++... .+.+|+.++|..+-.. .+|. ..... ..|+.| ...+|||
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~L 476 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFL 476 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhc---CCCeEEE
Confidence 89999999999998 44433 3579999999865321 2221 11111 234333 2469999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--C-----CC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--T-----LD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~-----Ld 215 (317)
||||.+-. ..+..|..++..-. +..... ....+.++.+|++|+..- . +.
T Consensus 477 dei~~L~~-----------~~Q~~L~~~l~~~~-~~~~g~------------~~~~~~~~RiI~~t~~~l~~~~~~~~f~ 532 (686)
T PRK15429 477 DEVGDMPL-----------ELQPKLLRVLQEQE-FERLGS------------NKIIQTDVRLIAATNRDLKKMVADREFR 532 (686)
T ss_pred echhhCCH-----------HHHHHHHHHHHhCC-EEeCCC------------CCcccceEEEEEeCCCCHHHHHHcCccc
Confidence 99999843 23555555554311 110000 001124688999998742 1 22
Q ss_pred ccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCCH---HHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVNL---QELIMAKDDLSGADIKAICTEAGLM 282 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~~---~~ia~~t~g~s~~dl~~l~~~A~~~ 282 (317)
+.|.. |+. ..|.+|+.. .++...+++.++.+. +.. ..+.- ..+....==-+-++|++++++|+..
T Consensus 533 ~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 533 SDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 23333 442 345555542 244444566665432 111 11222 2222221112678899999988764
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-06 Score=70.61 Aligned_cols=103 Identities=26% Similarity=0.416 Sum_probs=59.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCCch-------HHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGDGP-------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~~~-------~~l~~~f~~a~~~~P~Ii~i 142 (317)
.|+|++|.+||||++ ++.+.. +.+|+.|+|+.+-.. .+|... ..-.-+|+.|.. .+|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEee
Confidence 389999999999999 555544 469999999875332 122210 111245555544 59999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
|||+.+.. ..|.-|..+|+.-. +...... ...+-++.+|++||.
T Consensus 100 d~I~~L~~-----------~~Q~~Ll~~l~~~~-~~~~g~~------------~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPP-----------ELQAKLLRVLEEGK-FTRLGSD------------KPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-H-----------HHHHHHHHHHHHSE-EECCTSS------------SEEE--EEEEEEESS
T ss_pred cchhhhHH-----------HHHHHHHHHHhhch-hcccccc------------ccccccceEEeecCc
Confidence 99999853 34667777776421 1100000 011157899999986
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.3e-06 Score=82.58 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=93.8
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCCchH-------HHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGDGPK-------LVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~~~~-------~l~~~f~~a~~~~P~Ii~iD 143 (317)
|+|++|.+||||++ ++... .+.+|+.++|+.+-.. .+|.... .-.-.|+.| ....||||
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ld 288 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLD 288 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEEEec
Confidence 78899999999999 44443 4569999999876321 1221100 001124333 24689999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CC
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TL 214 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~L 214 (317)
|||.+... .+..|..++..-. ...+. ...+.++.+|++||+.- .+
T Consensus 289 eI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~---------------~~~~~~~RiI~~t~~~l~~~~~~~~f 342 (509)
T PRK05022 289 EIGELPLA-----------LQAKLLRVLQYGEIQRVGSD---------------RSLRVDVRVIAATNRDLREEVRAGRF 342 (509)
T ss_pred ChhhCCHH-----------HHHHHHHHHhcCCEeeCCCC---------------cceecceEEEEecCCCHHHHHHcCCc
Confidence 99998532 3455555554311 11100 00114678999998742 24
Q ss_pred CccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCCHHHHHHh-CCC--CCHHHHHHHHHHHHHHH
Q psy7780 215 DPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVNLQELIMA-KDD--LSGADIKAICTEAGLMA 283 (317)
Q Consensus 215 d~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~-t~g--~s~~dl~~l~~~A~~~a 283 (317)
.+.|.. |+. ..|++|+.. .++...+++.++++. +.. ..++-+.+... ... -+-++|++++++|+..+
T Consensus 343 ~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 343 RADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred cHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 444444 553 346666653 244555556555432 111 12232222222 122 26789999999988765
Q ss_pred H
Q psy7780 284 L 284 (317)
Q Consensus 284 ~ 284 (317)
.
T Consensus 421 ~ 421 (509)
T PRK05022 421 R 421 (509)
T ss_pred C
Confidence 4
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-06 Score=77.08 Aligned_cols=140 Identities=16% Similarity=0.291 Sum_probs=72.9
Q ss_pred hHHHhhhcCCCchh----hhhhcCCce--EEEEechhhhhhhcCCchHHHHHHHHHH-----------HhhCCceEeecc
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSAT--FLRVVGSELIQKYLGDGPKLVRELFRVA-----------EEHAPSIVFIDE 144 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~--~~~v~~s~l~~~~~g~~~~~l~~~f~~a-----------~~~~P~Ii~iDE 144 (317)
|.||.||+|||||+ .+.+.-+.. ...++++.... ...++.+.+.. .....+|+||||
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDD 108 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDD 108 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEET
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecc
Confidence 88999999999999 343322222 33454443211 22222222211 112247999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCC
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRP 221 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rp 221 (317)
+..-.+.. -+.. .....|.++++. .|+..... . ....=.++.+|+|.|... .+++.++|
T Consensus 109 lN~p~~d~----ygtq-~~iElLRQ~i~~-~g~yd~~~----------~-~~~~i~~i~~vaa~~p~~Gr~~is~R~~r- 170 (272)
T PF12775_consen 109 LNMPQPDK----YGTQ-PPIELLRQLIDY-GGFYDRKK----------L-EWKSIEDIQFVAAMNPTGGRNPISPRFLR- 170 (272)
T ss_dssp TT-S---T----TS---HHHHHHHHHHHC-SEEECTTT----------T-EEEEECSEEEEEEESSTTT--SHHHHHHT-
T ss_pred cCCCCCCC----CCCc-CHHHHHHHHHHh-cCcccCCC----------c-EEEEEeeeEEEEecCCCCCCCCCChHHhh-
Confidence 98654332 1222 123344455443 23322100 0 011115788999988643 48888998
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.|. .+.++.|+.+.-..|+..++.
T Consensus 171 -~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 171 -HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp -TEE-EEE----TCCHHHHHHHHHHH
T ss_pred -heE-EEEecCCChHHHHHHHHHHHh
Confidence 885 899999999999988877664
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.5e-06 Score=76.80 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=41.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------eEEEEec----hhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------TFLRVVG----SELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------~~~~v~~----s~l~~~~~g~~~~~l~~~f~~a 132 (317)
..+|.||||||||+ ++|+.++. +++.+.. +......++-.+..+|..|...
T Consensus 80 il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 80 ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHHH
Confidence 46899999999999 99999987 8999988 7766666666677777777544
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-06 Score=75.87 Aligned_cols=120 Identities=15% Similarity=0.228 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHhhC-CceEeeccccccc-ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 122 PKLVRELFRVAEEHA-PSIVFIDEIDAVG-TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~-~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
...+..+++...+.. ..||+|||++.+. ..+ ... ..+..+...++.....
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~---~~~~~l~~~~~~~~~~------------------- 154 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDK---DFLKSLRSLLDSLLSQ------------------- 154 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTH---HHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chH---HHHHHHHHHHhhcccc-------------------
Confidence 455777777766543 4899999999998 222 112 2333444444432222
Q ss_pred CCeEEEEEcCCCC------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC-C-CcCCCHHHHHHhCCCCCHHH
Q psy7780 200 GDVKVIMATNRIE------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT-L-AEDVNLQELIMAKDDLSGAD 271 (317)
Q Consensus 200 ~~v~vI~tTN~~~------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~-~-~~~~~~~~ia~~t~g~s~~d 271 (317)
.++.+|.++.... .-...+.. |+.. +.+++.+.++..++++..+.... + .++.+++.+...|.|. |+-
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~ 230 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRY 230 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHH
T ss_pred CCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHH
Confidence 4444444443321 12233444 8876 99999999999999999876651 1 2455677777777774 554
Q ss_pred HH
Q psy7780 272 IK 273 (317)
Q Consensus 272 l~ 273 (317)
|.
T Consensus 231 l~ 232 (234)
T PF01637_consen 231 LQ 232 (234)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-06 Score=76.49 Aligned_cols=81 Identities=11% Similarity=0.213 Sum_probs=50.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCC--chHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGD--GPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~--~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|+|+||||||+ |+|+++ +..++.++..+++...... ......++++.. ....+|+|||++....+.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s~- 179 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRETK- 179 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCCH-
Confidence 56899999999998 777776 6778888888877643210 000112333333 235799999997653221
Q ss_pred CCCCCchhHHHHHHHHHHHH
Q psy7780 154 DSNSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ 173 (317)
..+.+|.++++.
T Consensus 180 --------~~~~~l~~ii~~ 191 (248)
T PRK12377 180 --------NEQVVLNQIIDR 191 (248)
T ss_pred --------HHHHHHHHHHHH
Confidence 134566666665
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-06 Score=80.41 Aligned_cols=140 Identities=16% Similarity=0.243 Sum_probs=84.6
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---- 213 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---- 213 (317)
-|+||||+-.+- .++|..|-+-|+.-.- ..+....+...|.++.+|+++|..-.
T Consensus 285 GVLFLDElpef~--------------~~iLe~LR~PLE~g~i--------~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~ 342 (490)
T COG0606 285 GVLFLDELPEFK--------------RSILEALREPLENGKI--------IISRAGSKVTYPARFQLVAAMNPCPCGNLG 342 (490)
T ss_pred CEEEeeccchhh--------------HHHHHHHhCccccCcE--------EEEEcCCeeEEeeeeEEhhhcCCCCccCCC
Confidence 599999986541 1344444444432211 12333444556678999999987321
Q ss_pred -------------------CCccccCCCcceeEEEeCCCCHHHH--------------HHHHHHH------hcCCCCCcC
Q psy7780 214 -------------------LDPALIRPGRIDRKIEFPLPDEKTK--------------RRIFNIH------TSRMTLAED 254 (317)
Q Consensus 214 -------------------Ld~al~rpgRf~~~I~~~~P~~~~r--------------~~Il~~~------l~~~~~~~~ 254 (317)
|-..+++ |||..++++.++..++ ..+++.. ..+...+..
T Consensus 343 ~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~ 420 (490)
T COG0606 343 APLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAE 420 (490)
T ss_pred CCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchh
Confidence 3446788 9999999998763332 2222211 111101111
Q ss_pred ----------------CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 255 ----------------VNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 255 ----------------~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
.++.+.+-..-++|.+....+++-|...|--++...|...|+.+|+.
T Consensus 421 l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 421 LSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred cCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHh
Confidence 12222333445788888888888888888888888899999988875
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-05 Score=65.42 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=40.8
Q ss_pred HHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
.+++||.|||||+ .+++++. ..++++++.+.......... +.+.|.......+.+|||||+..+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999 6666655 67888887765442111111 222222222225689999999877
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.1e-06 Score=68.63 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=68.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----------------------ceEEEEechhhhhhhcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----------------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----------------------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||+|+||++ ++|+.+- -.++.++...-.. .-....++++.+.+...
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEFLSLS 97 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHHCTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHHHHHH
Confidence 46899999999998 4444331 1344443332100 11245677666665432
Q ss_pred ----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 ----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
..-|++|||+|.+.. +.+..|...|++ .. .++.+|.+|+.+
T Consensus 98 ~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEe---pp---------------------~~~~fiL~t~~~ 142 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEE---PP---------------------ENTYFILITNNP 142 (162)
T ss_dssp -TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHS---TT---------------------TTEEEEEEES-G
T ss_pred HhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcC---CC---------------------CCEEEEEEECCh
Confidence 245999999998843 234555555554 22 578899999999
Q ss_pred CCCCccccCCCcceeEEEeCCC
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P 233 (317)
+.|.|.+++ |+- .+.|+++
T Consensus 143 ~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 143 SKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp GGS-HHHHT--TSE-EEEE---
T ss_pred HHChHHHHh--hce-EEecCCC
Confidence 999999999 984 7777654
|
... |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.9e-06 Score=76.29 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||.|+||++ ++|+.+-+ .|+.+.... .++ ..+-..+|++-+.+...
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNRLAQES 103 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHHHHhhC
Confidence 57999999999998 44443321 233333211 000 01234566665555332
Q ss_pred ----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 ----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
.--|++||++|.+... ..+.|...|++ - |.++++|.+|+.+
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---P---------------------p~~t~fiL~t~~~ 148 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNES-----------ASNALLKTLEE---P---------------------APNCLFLLVTHNQ 148 (319)
T ss_pred cccCCceEEEecchhhhCHH-----------HHHHHHHHhcC---C---------------------CCCeEEEEEECCh
Confidence 2369999999998432 23444455544 2 1678899999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
+.|.|.+++ |+. .+.|+.|+.++..+.+..
T Consensus 149 ~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 149 KRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 999999999 995 899999999988888764
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-06 Score=74.95 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=44.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcC-CchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
..+|+||||||||+ +++.+ .|..+..+++.++...+.. .....+..+|... ...|.+++|||++...
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 57799999999999 55443 4778888888887754321 1112344555543 2356799999998653
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=66.08 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh----------------------hcCC--chHHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK----------------------YLGD--GPKLVRELFRVA 132 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~----------------------~~g~--~~~~l~~~f~~a 132 (317)
.+++|+||+|||+ .++..+ +.+++.++...-... +... .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 4689999999999 454444 456666655322110 0011 111122334556
Q ss_pred HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 133 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
....|.+++|||+..+.........+......+.+..++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 124 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR 124 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 6777899999999998754321001122333445555555543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-06 Score=79.66 Aligned_cols=169 Identities=21% Similarity=0.326 Sum_probs=92.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcC--------CchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLG--------DGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g--------~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
++|+.|.+||||-+ ++.+.. +.||+.|||..+-.. .+| ...+.. -.|+.|.. ..|||
T Consensus 166 ~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~-G~fE~A~G---GTLfL 241 (464)
T COG2204 166 SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRI-GRFEQANG---GTLFL 241 (464)
T ss_pred CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccC-cceeEcCC---ceEEe
Confidence 89999999999998 554444 459999999764321 122 111111 13444433 59999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHH--hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQ--LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIR 220 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~r 220 (317)
|||..+-. ++|.-|...|.+ +..+.++ ...+-+|-||++||+. |...+-
T Consensus 242 DEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~~---------------~~i~vdvRiIaaT~~d--L~~~v~- 292 (464)
T COG2204 242 DEIGEMPL-----------ELQVKLLRVLQEREFERVGGN---------------KPIKVDVRIIAATNRD--LEEEVA- 292 (464)
T ss_pred eccccCCH-----------HHHHHHHHHHHcCeeEecCCC---------------cccceeeEEEeecCcC--HHHHHH-
Confidence 99987732 244445555543 1111111 0111468899999972 222222
Q ss_pred CCcce-------eEEEeCCCCH----HHHHHHHHHHhcCC----CC-CcCCCHHHHHHhC-CCC--CHHHHHHHHHHHHH
Q psy7780 221 PGRID-------RKIEFPLPDE----KTKRRIFNIHTSRM----TL-AEDVNLQELIMAK-DDL--SGADIKAICTEAGL 281 (317)
Q Consensus 221 pgRf~-------~~I~~~~P~~----~~r~~Il~~~l~~~----~~-~~~~~~~~ia~~t-~g~--s~~dl~~l~~~A~~ 281 (317)
-|||. .++.+..|.. ++.-.+++.++++. +. ....+-+.+...+ ..+ +-++|+|++++++.
T Consensus 293 ~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 293 AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHh
Confidence 23332 2444444543 44444666666542 11 2344445554442 333 46778888888776
Q ss_pred HH
Q psy7780 282 MA 283 (317)
Q Consensus 282 ~a 283 (317)
.+
T Consensus 373 l~ 374 (464)
T COG2204 373 LS 374 (464)
T ss_pred cC
Confidence 54
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.3e-06 Score=74.11 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=41.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
.+.+|+|+||+|||+ |+|+++ +..+++++..+++...... .....+.++.. ....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 468899999999998 777765 6778888887766542111 11122222222 2347999999943
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=9e-06 Score=76.34 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=45.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcC---CchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLG---DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g---~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
...+|+|+||||||+ |+|+++ |..+++++..+++..... +........++.... ..+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCC
Confidence 468899999999998 888876 778999999888765421 111111222333332 3799999997653
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-06 Score=75.78 Aligned_cols=73 Identities=8% Similarity=0.116 Sum_probs=45.1
Q ss_pred eEeechhhHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcCC-chHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 75 TFLRVVGSELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 75 ~~~~i~g~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
.|-+-+...+|+||||||||+ +++.+ .|..+..++.++++...... ....+...+... ..+.+|+|||++.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~ 170 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGY 170 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEccccc
Confidence 344433467899999999998 55554 36777777777776643211 111222222222 2357999999987
Q ss_pred cc
Q psy7780 148 VG 149 (317)
Q Consensus 148 l~ 149 (317)
+.
T Consensus 171 ~~ 172 (254)
T PRK06526 171 IP 172 (254)
T ss_pred CC
Confidence 64
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.7e-06 Score=79.15 Aligned_cols=176 Identities=21% Similarity=0.265 Sum_probs=91.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcCCchHHHHHHHHHH---------------HhhCCceE
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLGDGPKLVRELFRVA---------------EEHAPSIV 140 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a---------------~~~~P~Ii 140 (317)
++++.|.+|||||+ ++.+. .+.+|+.++|..+-.... -..+|..+ .......|
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 232 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCEE
Confidence 67899999999998 33333 457999999987532111 11122111 11224689
Q ss_pred eecccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 141 FIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 141 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
||||+|.+... .+..+..+++.-. ...+. .....++.+|+||+.. ++..+
T Consensus 233 ~l~~i~~l~~~-----------~q~~L~~~l~~~~~~~~g~~---------------~~~~~~~rii~~~~~~--l~~~~ 284 (444)
T PRK15115 233 FLDEIGDMPAP-----------LQVKLLRVLQERKVRPLGSN---------------RDIDIDVRIISATHRD--LPKAM 284 (444)
T ss_pred EEEccccCCHH-----------HHHHHHHHHhhCCEEeCCCC---------------ceeeeeEEEEEeCCCC--HHHHH
Confidence 99999998543 3455555554311 11000 0001368899999863 43333
Q ss_pred cCCCcc---------eeEEEeCCCCHHHHH----HHHHHHhcCC----CCC----cCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 219 IRPGRI---------DRKIEFPLPDEKTKR----RIFNIHTSRM----TLA----EDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 219 ~rpgRf---------~~~I~~~~P~~~~r~----~Il~~~l~~~----~~~----~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
.+ |+| ...|.+|+ -.+|. .+++.++++. ... +...+..+....=--+.++|+++++
T Consensus 285 ~~-~~f~~~l~~~l~~~~i~lPp--Lr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~ 361 (444)
T PRK15115 285 AR-GEFREDLYYRLNVVSLKIPA--LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 (444)
T ss_pred Hc-CCccHHHHHhhceeeecCCC--hHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHH
Confidence 22 444 23444444 44443 3555555432 111 1122333433331226778888888
Q ss_pred HHHHHHHHhcCCCcCHHHHH
Q psy7780 278 EAGLMALRERRMKVTNEDFK 297 (317)
Q Consensus 278 ~A~~~a~~~~~~~it~~d~~ 297 (317)
+|+..+ ....|+.+++.
T Consensus 362 ~~~~~~---~~~~i~~~~l~ 378 (444)
T PRK15115 362 QCVALT---SSPVISDALVE 378 (444)
T ss_pred HHHHhC---CCCccChhhhh
Confidence 876542 23345555553
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.7e-05 Score=62.75 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=49.8
Q ss_pred HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC
Q psy7780 133 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~ 212 (317)
....+.+|+||.+|.+...... .........+.+++.. . . +.++.+|.|+....
T Consensus 78 ~~~~~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~-~-~---------------------~~~~~liit~r~~~ 131 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ-A-L---------------------PPGVKLIITSRPRA 131 (166)
T ss_pred HcCCceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh-c-c---------------------CCCCeEEEEEcCCh
Confidence 3455678999999999764311 1122233344444433 0 1 13445555554322
Q ss_pred C--CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 213 T--LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 213 ~--Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
. +...+.. ...+.++..+.+++.++++.++++
T Consensus 132 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 132 FPDLRRRLKQ----AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHhcCC----CcEEEECCCCHHHHHHHHHHHhhc
Confidence 2 3333332 147899999999999999998864
|
|
| >KOG1968|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=81.97 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=100.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc-----CC--chHHHHHHH---HHHHh-hCC-ceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL-----GD--GPKLVRELF---RVAEE-HAP-SIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~-----g~--~~~~l~~~f---~~a~~-~~P-~Ii~iDEiD~ 147 (317)
.|+.||||+|||+ ++|.++|..++..++++..+++. |+ +...|..-| ..... ..+ -||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 5999999999999 99999999999999987765432 22 122333334 00000 012 3899999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
.... .+.....+.+++.. ..+-+|+++|........-+. |-...
T Consensus 440 ~~~~--------dRg~v~~l~~l~~k--------------------------s~~Piv~~cndr~~p~sr~~~--~~~~~ 483 (871)
T KOG1968|consen 440 MFGE--------DRGGVSKLSSLCKK--------------------------SSRPLVCTCNDRNLPKSRALS--RACSD 483 (871)
T ss_pred ccch--------hhhhHHHHHHHHHh--------------------------ccCCeEEEecCCCCccccchh--hhcce
Confidence 8651 11112333344432 234488999887766653333 33357
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCC-CcCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTL-AEDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~-~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
++|+.|+.+.+..-+...+....+ -.+..++++.+.+ ++||++++..-.+
T Consensus 484 l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 484 LRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQF 534 (871)
T ss_pred eeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhh
Confidence 999999998887766655443222 2344577777764 7788877765443
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.3e-06 Score=72.02 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=40.1
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
..++|+|||+..+++.|..... .....+ +++.+.-. .+.-+|.+|.++..||
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~----~~~~~~-~~l~~hRh-----------------------~g~diiliTQ~~~~id 130 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGK----KVPEII-EFLAQHRH-----------------------YGWDIILITQSPSQID 130 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T--------HHH-HGGGGCCC-----------------------TT-EEEEEES-GGGB-
T ss_pred CCcEEEEECChhhcCCCccccc----cchHHH-HHHHHhCc-----------------------CCcEEEEEeCCHHHHh
Confidence 4589999999999998843211 112223 44433222 3455999999999999
Q ss_pred ccccCCCcceeEEEeCCC
Q psy7780 216 PALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P 233 (317)
+.+++ +.+..+++..+
T Consensus 131 ~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 131 KFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp HHHHC--CEEEEEEEEE-
T ss_pred HHHHH--HHheEEEEEee
Confidence 99988 88888877654
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.5e-05 Score=75.14 Aligned_cols=167 Identities=13% Similarity=0.207 Sum_probs=90.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe-chhhh------hhhcCCch------H---HHHHH-HHHHHh-------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV-GSELI------QKYLGDGP------K---LVREL-FRVAEE------- 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~-~s~l~------~~~~g~~~------~---~l~~~-f~~a~~------- 134 (317)
..|++||||||||+ ++|++++..+.+-. ...+. ..|.+... . ...++ +..++.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g 126 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG 126 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence 36789999999999 99999998877643 22211 11111111 1 11111 111121
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCC-CeEEEEE-c
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPG-DVKVIMA-T 208 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~-~v~vI~t-T 208 (317)
..+.||+|||+=.++... ......+|.+++.. +. . ++++|.+ +
T Consensus 127 ~~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L~~~l~~-----~~-------------------~~PlV~iiSe~ 175 (519)
T PF03215_consen 127 SNSSSNKKVILVEDLPNVFHRD-------TSRFREALRQYLRS-----SR-------------------CLPLVFIISET 175 (519)
T ss_pred CCcCCCceEEEeeccccccchh-------HHHHHHHHHHHHHc-----CC-------------------CCCEEEEEecc
Confidence 236799999987654332 13445555555543 11 2 5666666 1
Q ss_pred ------CCCC--------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC--------CCCcCCC-HHHHHHhCC
Q psy7780 209 ------NRIE--------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--------TLAEDVN-LQELIMAKD 265 (317)
Q Consensus 209 ------N~~~--------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~--------~~~~~~~-~~~ia~~t~ 265 (317)
|... .+++.++.-.++ ..|.|.+-....-++-|+..+... ....... ++.|+..+
T Consensus 176 ~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s- 253 (519)
T PF03215_consen 176 ESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS- 253 (519)
T ss_pred cccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc-
Confidence 1111 467777654445 478888776655555554443321 1111122 56777664
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy7780 266 DLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 266 g~s~~dl~~l~~~A~~~a~ 284 (317)
.+||+..++.--+.+.
T Consensus 254 ---~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 254 ---NGDIRSAINNLQFWCL 269 (519)
T ss_pred ---CchHHHHHHHHHHHhc
Confidence 4599988876555554
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.6e-06 Score=67.81 Aligned_cols=67 Identities=27% Similarity=0.435 Sum_probs=44.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCC---ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
|++++|.|||||++ ++....+ .+|+.++|..+- .++++.+ .+..|+|+|+|.+-..
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~---- 84 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE---- 84 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH----
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH----
Confidence 88999999999999 4444433 467777776532 3455554 5579999999998433
Q ss_pred CCCchhHHHHHHHHHHHH
Q psy7780 156 NSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ 173 (317)
.+..+..++..
T Consensus 85 -------~Q~~L~~~l~~ 95 (138)
T PF14532_consen 85 -------AQRRLLDLLKR 95 (138)
T ss_dssp -------HHHHHHHHHHH
T ss_pred -------HHHHHHHHHHh
Confidence 46666677766
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=74.24 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=44.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCC-chHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+.+|+|+||||||. |+|+++ |..+..+..++++...... ....+.+.++..+ ...+|+|||+.+-
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 67899999999999 888887 7778888888776543211 0112334444433 3479999999764
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.8e-05 Score=73.24 Aligned_cols=173 Identities=19% Similarity=0.220 Sum_probs=90.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCch-------HHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGP-------KLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~-------~~l~~~f~~a~~~~P~Ii~iD 143 (317)
++++.|.+||||++ ++... .+.+|+.++|+.+-... .|... ......|+. ....+||||
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ 240 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLD 240 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEe
Confidence 78899999999998 44333 34689999998753221 11100 000001221 224699999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~ 216 (317)
|+|.+... .+..+..+++.-. +.... .....+.++.+|+||+.. ..+.+
T Consensus 241 ~i~~l~~~-----------~q~~l~~~l~~~~-~~~~~------------~~~~~~~~~rii~~~~~~l~~~~~~~~~~~ 296 (445)
T TIGR02915 241 EIGDLPLN-----------LQAKLLRFLQERV-IERLG------------GREEIPVDVRIVCATNQDLKRMIAEGTFRE 296 (445)
T ss_pred chhhCCHH-----------HHHHHHHHHhhCe-EEeCC------------CCceeeeceEEEEecCCCHHHHHHcCCccH
Confidence 99998532 3555555654311 10000 000112467899999874 23444
Q ss_pred cccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVN---LQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 217 al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
.|.. |+. ..|++|+.. .++...+++.++.+. +.. ...+ +..+....=--+-++|++++++|+..+
T Consensus 297 ~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 297 DLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 4544 553 445555542 133334555555432 111 1222 233333221225788999999887543
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.8e-05 Score=77.67 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=103.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCchH----HHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGPK----LVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~~----~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
++++.|.+||||++ ++... .+.+|+.++|..+-..+ .|.... ................|||||+|
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 67899999999999 44333 35699999997753221 121100 00000000112235789999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcC--CCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCcc
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDG--FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDPA 217 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~--~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~a 217 (317)
.+... .+..|..++..-.. ..+. .....++.+|++|+..- .+.+.
T Consensus 239 ~l~~~-----------~q~~ll~~l~~~~~~~~~~~---------------~~~~~~~rii~~~~~~l~~~~~~~~f~~~ 292 (463)
T TIGR01818 239 DMPLD-----------AQTRLLRVLADGEFYRVGGR---------------TPIKVDVRIVAATHQNLEALVRQGKFRED 292 (463)
T ss_pred hCCHH-----------HHHHHHHHHhcCcEEECCCC---------------ceeeeeeEEEEeCCCCHHHHHHcCCcHHH
Confidence 88432 35555556543110 0000 00113577899987642 34445
Q ss_pred ccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCCC----C-cCCCHHHHHHh-CCCC--CHHHHHHHHHHHHHHHHHh
Q psy7780 218 LIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMTL----A-EDVNLQELIMA-KDDL--SGADIKAICTEAGLMALRE 286 (317)
Q Consensus 218 l~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~~----~-~~~~~~~ia~~-t~g~--s~~dl~~l~~~A~~~a~~~ 286 (317)
|.. |+. ..|++|+.. .++...+++.++.+... . ...+-+.+... ..++ +-++|++++++|+..+
T Consensus 293 L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~--- 367 (463)
T TIGR01818 293 LFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA--- 367 (463)
T ss_pred HHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---
Confidence 555 554 477777765 56777777776654311 1 12222222222 1233 4588888888877654
Q ss_pred cCCCcCHHHHHHHH
Q psy7780 287 RRMKVTNEDFKKSK 300 (317)
Q Consensus 287 ~~~~it~~d~~~al 300 (317)
....|+.+|+...+
T Consensus 368 ~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 368 SGDEVLVSDLPAEL 381 (463)
T ss_pred CCCcccHHhchHHH
Confidence 23568888886554
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.2e-05 Score=68.97 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=42.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCC-chHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
..+|+|+||||||. |+|+++ |..+..++.++|+...... ......+.++.... +.+|+|||+..
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 57899999999999 555544 7889999999988764321 11223344444433 47999999864
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.2e-05 Score=61.36 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=41.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC--------CceEEEEechhhhh----------hh----cC-Cc-hHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT--------SATFLRVVGSELIQ----------KY----LG-DG-PKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~--------~~~~~~v~~s~l~~----------~~----~g-~~-~~~l~~~f~~a~~ 134 (317)
..+++|+||+|||+ .++.+. +.+++.++++...+ .+ .+ .+ ......+.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 45689999999999 666655 77888888765331 10 11 12 2233334444444
Q ss_pred hCCceEeeccccccc
Q psy7780 135 HAPSIVFIDEIDAVG 149 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~ 149 (317)
....+|+|||+|.+.
T Consensus 86 ~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 86 RRVVLLVIDEADHLF 100 (131)
T ss_dssp CTEEEEEEETTHHHH
T ss_pred cCCeEEEEeChHhcC
Confidence 444599999999975
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.6e-05 Score=70.70 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=43.3
Q ss_pred hhhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcC-----CchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLG-----DGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g-----~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+...+|+|+||+|||. |+|+++ |..++.+..++++..... ..+..+... . ....+|+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccCc
Confidence 3367899999999999 666665 788999999998875321 112222111 2 22369999998765
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.5e-05 Score=72.71 Aligned_cols=183 Identities=22% Similarity=0.284 Sum_probs=92.5
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCCchHH-------HHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGDGPKL-------VRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~~~~~-------l~~~f~~a~~~~P~Ii~iD 143 (317)
+++++|++||||++ ++... .+.+|+.++|..+-.. .+|..... -...|..| ...+||||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld 244 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLD 244 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEe
Confidence 78999999999999 44333 4569999999875322 11111000 00112222 23699999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~ 216 (317)
|+|.+... .+..+..++..-. +..... ....+.++.+|+|||..- .+.+
T Consensus 245 ~i~~l~~~-----------~q~~L~~~l~~~~-~~~~~~------------~~~~~~~~rii~~t~~~l~~~~~~g~~~~ 300 (457)
T PRK11361 245 EIGEMPLV-----------LQAKLLRILQERE-FERIGG------------HQTIKVDIRIIAATNRDLQAMVKEGTFRE 300 (457)
T ss_pred chhhCCHH-----------HHHHHHHHHhcCc-EEeCCC------------CceeeeceEEEEeCCCCHHHHHHcCCchH
Confidence 99998533 3455555554311 110000 001124688999998642 2333
Q ss_pred cccCCCcceeEEEeCCCCHHHH----HHHHHHHhcCCCC----C-cCCCHHH---HHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTK----RRIFNIHTSRMTL----A-EDVNLQE---LIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r----~~Il~~~l~~~~~----~-~~~~~~~---ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
.+.. |+. .+.+..|...+| ..++..++.+... . ...+.+. +....=--+-++|++++++|...+
T Consensus 301 ~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~- 376 (457)
T PRK11361 301 DLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN- 376 (457)
T ss_pred HHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC-
Confidence 4443 442 244444444444 3355555443211 1 1222222 222221126788888888876543
Q ss_pred HhcCCCcCHHHHH
Q psy7780 285 RERRMKVTNEDFK 297 (317)
Q Consensus 285 ~~~~~~it~~d~~ 297 (317)
....|+.+|+.
T Consensus 377 --~~~~i~~~~l~ 387 (457)
T PRK11361 377 --SGPIIFSEDLP 387 (457)
T ss_pred --CCCcccHHHCh
Confidence 23345555554
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.5e-05 Score=75.02 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=99.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh-----hhh-----hhcCCchHHHH-HHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE-----LIQ-----KYLGDGPKLVR-ELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~-----l~~-----~~~g~~~~~l~-~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
++|+.|.||||||. .+++-.. .-+++++.. |.. ...|+ ..++ -.+-.|. ..|++|||+|.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~p-r~v~~~g~~~s~~gLta~~~~d~~~~~--~~leaGalvlad---~GiccIDe~dk 132 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAP-RSVYTSGKGSSAAGLTASVSRDPVTGE--WVLEAGALVLAD---GGICCIDEFDK 132 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-S-SEEEEECCGSTCCCCCEEECCCGGTSS--ECEEE-HHHHCT---TSEEEECTTTT
T ss_pred ceeeccchhhhHHHHHHHHHhhCC-ceEEECCCCcccCCccceeccccccce--eEEeCCchhccc---Cceeeeccccc
Confidence 89999999999998 3333322 223333322 110 00111 0111 0122222 36999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------------CC
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------TL 214 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------~L 214 (317)
+-.. ....|.+.+++ ..-.. .+.+-...++.+.-|++++|... .+
T Consensus 133 ~~~~-----------~~~~l~eaMEq---q~isi--------~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l 190 (331)
T PF00493_consen 133 MKED-----------DRDALHEAMEQ---QTISI--------AKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINL 190 (331)
T ss_dssp --CH-----------HHHHHHHHHHC---SCEEE--------CTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S
T ss_pred ccch-----------HHHHHHHHHHc---Ceecc--------chhhhcccccchhhhHHHHhhhhhhcchhhhhHHhccc
Confidence 7431 13344444443 22111 11112244567788999999876 48
Q ss_pred CccccCCCcceeEEEe-CCCCHHHHHHHHHHHhcCCCCC---------c---CCC------HHHHHH-------------
Q psy7780 215 DPALIRPGRIDRKIEF-PLPDEKTKRRIFNIHTSRMTLA---------E---DVN------LQELIM------------- 262 (317)
Q Consensus 215 d~al~rpgRf~~~I~~-~~P~~~~r~~Il~~~l~~~~~~---------~---~~~------~~~ia~------------- 262 (317)
+++|++ |||..+.+ ..|+.+.-..|.+..++..... . ..+ +-..++
T Consensus 191 ~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~ 268 (331)
T PF00493_consen 191 PPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKE 268 (331)
T ss_dssp -CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHH
T ss_pred chhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHH
Confidence 899999 99977654 5667665555555444332110 0 000 011111
Q ss_pred -----------------hCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 263 -----------------AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 263 -----------------~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.....|.+.|..+++-|-..|.-+-+..|+.+|+..|++-+..
T Consensus 269 ~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 269 LIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 0123677888889888888887777899999999999886543
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.8e-05 Score=74.23 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=101.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhh-----cCCchH-------HHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKY-----LGDGPK-------LVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~-----~g~~~~-------~l~~~f~~a~~~~P~Ii~iD 143 (317)
|+++.|.+|||||+ ++.+.. +.+|+.++|+.+-... .|.... .-...|+.| ....+|||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~ 239 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLD 239 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEe
Confidence 88999999999999 444443 4699999998763211 111100 000012222 24589999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~ 216 (317)
|+|.+... .+..|..+++.-. +..... ......++.+|+||+.. ..+.+
T Consensus 240 ~i~~l~~~-----------~q~~L~~~l~~~~-~~~~~~------------~~~~~~~~rii~~~~~~l~~~~~~~~~~~ 295 (469)
T PRK10923 240 EIGDMPLD-----------VQTRLLRVLADGQ-FYRVGG------------YAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 (469)
T ss_pred ccccCCHH-----------HHHHHHHHHhcCc-EEeCCC------------CCeEEeeEEEEEeCCCCHHHHHHcCCchH
Confidence 99998533 3455555554311 000000 00001357899999763 23556
Q ss_pred cccCCCcc-eeEEEeCCCC--HHHHHHHHHHHhcCCC----CC-cCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRI-DRKIEFPLPD--EKTKRRIFNIHTSRMT----LA-EDVN---LQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 217 al~rpgRf-~~~I~~~~P~--~~~r~~Il~~~l~~~~----~~-~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
.|.. || ...|++|+.. .++...+++.++++.. .. ...+ +..+....=--+-++|++++++|...+
T Consensus 296 ~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~-- 371 (469)
T PRK10923 296 DLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA-- 371 (469)
T ss_pred HHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC--
Confidence 6666 76 4667776653 3555667777665421 11 1122 222333221225788888888877654
Q ss_pred hcCCCcCHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKS 299 (317)
Q Consensus 286 ~~~~~it~~d~~~a 299 (317)
....|+.+|+-..
T Consensus 372 -~~~~i~~~~l~~~ 384 (469)
T PRK10923 372 -AGQEVLIQDLPGE 384 (469)
T ss_pred -CCCcccHHHCcHh
Confidence 2446777777433
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=7e-05 Score=80.85 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=88.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh---hhhhh----cCC--chHHHHH-HHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE---LIQKY----LGD--GPKLVRE-LFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~---l~~~~----~g~--~~~~l~~-~f~~a~~~~P~Ii~iDEiD~l 148 (317)
|+|+.|-||+|||+ |+|+++|-.+++|+.|+ |++-+ .++ ++-..++ =|-.|-+. .--|++||+...
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNLa 1623 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINLA 1623 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhhh
Confidence 89999999999999 99999999999999875 33321 222 1111111 12223222 257899998643
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc-ccCCCCeEEEEEcCCCCC------CCccccCC
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL-IYLPGDVKVIMATNRIET------LDPALIRP 221 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~-~~~~~~v~vI~tTN~~~~------Ld~al~rp 221 (317)
.|+++..+=..+|.-... ++-++.+ +..-.++.|++|-|..+. ||..++.
T Consensus 1624 --------------SQSVlEGLNacLDhR~ea--------yIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n- 1680 (4600)
T COG5271 1624 --------------SQSVLEGLNACLDHRREA--------YIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN- 1680 (4600)
T ss_pred --------------HHHHHHHHHHHHhhcccc--------ccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh-
Confidence 134444444444432211 1111211 333367888888887654 9999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
||. ++++...+.+....|......+
T Consensus 1681 -RFs-vV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1681 -RFS-VVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred -hhh-eEEecccccchHHHHHHhhCCc
Confidence 996 7888888777777777666543
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00087 Score=60.00 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=110.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC---ceEEEEechh-----hhhhh----cCCc--------hHHHHHHHHHHHh-hCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS---ATFLRVVGSE-----LIQKY----LGDG--------PKLVRELFRVAEE-HAP 137 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~-----l~~~~----~g~~--------~~~l~~~f~~a~~-~~P 137 (317)
-..+.|.-|+|||. |++..++ .-.+.++... +..-+ .+.. ++.-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 34578999999999 4444443 2334444322 22211 1111 2222333333333 346
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CCCCC-
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IETLD- 215 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~~Ld- 215 (317)
-++++||++.+.... ...+.-|.+.-++..+. -.+++|+-..- +..--
T Consensus 133 v~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~-------------------l~ivL~Gqp~L~~~lr~~ 182 (269)
T COG3267 133 VVLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKL-------------------LSIVLIGQPKLRPRLRLP 182 (269)
T ss_pred eEEeehhHhhhChhH-----------HHHHHHHHhhcccccCc-------------------eeeeecCCcccchhhchH
Confidence 899999999885432 12222222222222111 34666665421 11111
Q ss_pred --ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC----CcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 216 --PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL----AEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 216 --~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~----~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
..+.. |++.+|++++.+.++-...++.+++.... -++..+..+...+.| .|+-+.++|..|...|...+..
T Consensus 183 ~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~ 259 (269)
T COG3267 183 VLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGED 259 (269)
T ss_pred HHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCC
Confidence 13446 88888999999999888899888876533 244456777778888 7999999999999999999999
Q ss_pred CcCHHHHH
Q psy7780 290 KVTNEDFK 297 (317)
Q Consensus 290 ~it~~d~~ 297 (317)
.|+...+.
T Consensus 260 ~v~~a~~~ 267 (269)
T COG3267 260 GVSEAEIK 267 (269)
T ss_pred ccchhhcc
Confidence 88877654
|
|
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00042 Score=63.18 Aligned_cols=104 Identities=27% Similarity=0.266 Sum_probs=76.2
Q ss_pred eEEEEEcCC-------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCC
Q psy7780 202 VKVIMATNR-------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 267 (317)
Q Consensus 202 v~vI~tTN~-------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~ 267 (317)
-+||++||| |..+|+.|+. |+- .|..-+++.++.++|++...+...+. .+..+..++.....-
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~t 402 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTST 402 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccch
Confidence 457777776 4558889998 884 66666778888889998886654444 333456666665556
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 268 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 268 s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
|-+-..+++.-|...|-..++..|+.+|++++-+-.+..++
T Consensus 403 sLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~ 443 (456)
T KOG1942|consen 403 SLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKR 443 (456)
T ss_pred hHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchh
Confidence 67777788888888998899999999999998776654443
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.6e-05 Score=74.46 Aligned_cols=169 Identities=22% Similarity=0.342 Sum_probs=89.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCC----chHHH---HHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGD----GPKLV---RELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~----~~~~l---~~~f~~a~~~~P~Ii~iD 143 (317)
++|+.|-.||||-. +|-+.. +.+|+.+||+.+-.. .+|. ....+ +--|+.|. ..-+|+|
T Consensus 248 tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLD 324 (550)
T COG3604 248 TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLD 324 (550)
T ss_pred eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecC---CCeEech
Confidence 78999999999999 555444 569999999765322 1111 10000 01133332 3589999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHH--hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCC
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQ--LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRP 221 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rp 221 (317)
||..+-.. +|.-|...|.+ +..+-+. +.. .-+|-||+|||+ +|-.+++.
T Consensus 325 EIGelPL~-----------lQaKLLRvLQegEieRvG~~----r~i-----------kVDVRiIAATNR--DL~~~V~~- 375 (550)
T COG3604 325 EIGELPLA-----------LQAKLLRVLQEGEIERVGGD----RTI-----------KVDVRVIAATNR--DLEEMVRD- 375 (550)
T ss_pred hhccCCHH-----------HHHHHHHHHhhcceeecCCC----cee-----------EEEEEEEeccch--hHHHHHHc-
Confidence 99877322 33434434332 2222221 110 136899999998 44444443
Q ss_pred Cccee-------E--EEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCC---HHHHHHhC-CCCCHHHHHHHHHHHHH
Q psy7780 222 GRIDR-------K--IEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVN---LQELIMAK-DDLSGADIKAICTEAGL 281 (317)
Q Consensus 222 gRf~~-------~--I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~---~~~ia~~t-~g~s~~dl~~l~~~A~~ 281 (317)
|+|.. + |++|+.- .+..--+.+.+++++ +.. -..+ ++.+.+.. .| +-+++++++++|+.
T Consensus 376 G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPG-NVRELen~veRavl 454 (550)
T COG3604 376 GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPG-NVRELENVVERAVL 454 (550)
T ss_pred CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCC-cHHHHHHHHHHHHH
Confidence 56531 1 3333331 123333344444432 221 1112 23333322 23 67999999999999
Q ss_pred HH
Q psy7780 282 MA 283 (317)
Q Consensus 282 ~a 283 (317)
.|
T Consensus 455 la 456 (550)
T COG3604 455 LA 456 (550)
T ss_pred Hh
Confidence 87
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=69.19 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=90.2
Q ss_pred hHHHhhhcCCCchh---hhh---hcCCceEEEEechhhhhhh-----cCCchHHH----HHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVA---NQTSATFLRVVGSELIQKY-----LGDGPKLV----RELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA---~~~~~~~~~v~~s~l~~~~-----~g~~~~~l----~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+++++|.+||||++ ++. ...+.+|+.++|+.+.... .|...... ...........+.+|||||+|
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccc
Confidence 67889999999998 333 2345799999998653221 11110000 000000112235799999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcce-
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRID- 225 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~- 225 (317)
.+... .+..+..++..-. +... + .....+.++.+|+||+..- .....+|+|.
T Consensus 244 ~l~~~-----------~q~~l~~~l~~~~-~~~~-~-----------~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~ 296 (441)
T PRK10365 244 DISPM-----------MQVRLLRAIQERE-VQRV-G-----------SNQTISVDVRLIAATHRDL---AAEVNAGRFRQ 296 (441)
T ss_pred cCCHH-----------HHHHHHHHHccCc-EEeC-C-----------CCceeeeceEEEEeCCCCH---HHHHHcCCchH
Confidence 98543 2344444443311 0000 0 0000113577888887632 1223344552
Q ss_pred --------eEEEeCCCC--HHHHHHHHHHHhcCCC----CC-cCCCH---HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 226 --------RKIEFPLPD--EKTKRRIFNIHTSRMT----LA-EDVNL---QELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 226 --------~~I~~~~P~--~~~r~~Il~~~l~~~~----~~-~~~~~---~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
..|.+|+.. .++...+++.++.+.. .. ...+. ..+....=--+-++|+++++.|+..+ .
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~ 373 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---T 373 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---C
Confidence 345555442 2344456666654321 11 11222 22332221125677888888776542 2
Q ss_pred CCCcCHHHHH
Q psy7780 288 RMKVTNEDFK 297 (317)
Q Consensus 288 ~~~it~~d~~ 297 (317)
...|+.+|+.
T Consensus 374 ~~~i~~~~l~ 383 (441)
T PRK10365 374 GEYISERELP 383 (441)
T ss_pred CCccchHhCc
Confidence 2345555553
|
|
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00013 Score=75.76 Aligned_cols=103 Identities=24% Similarity=0.279 Sum_probs=66.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..+|.||.|+|||- |+|..+ .-.|++++++++.. .|+|..+ ...+.+..++..-|||||||||
T Consensus 593 wflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 593 WFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred EEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechh
Confidence 46899999999998 777776 34799999986332 2555543 3356666666666999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.-. ..++..|.++++.-.--++. +..+ .-++++||+|+|.
T Consensus 671 kAh-----------~~v~n~llq~lD~GrltDs~--Gr~V-----------d~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 671 KAH-----------PDVLNILLQLLDRGRLTDSH--GREV-----------DFKNAIFIMTSNV 710 (898)
T ss_pred hcC-----------HHHHHHHHHHHhcCccccCC--CcEe-----------eccceEEEEeccc
Confidence 653 33455666665531111111 1111 1178999999876
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=64.05 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=42.3
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechhh-----hh---hh----cC-----------CchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSEL-----IQ---KY----LG-----------DGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l-----~~---~~----~g-----------~~~~~l~~~f~~a 132 (317)
..+++|+||+|||+ .+|. ..+...++++..++ .. .+ .+ +....+..+.+.+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 93 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFI 93 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHH
Confidence 35789999999998 2221 33566777776431 11 00 00 0112244555556
Q ss_pred HhhCCceEeecccccccc
Q psy7780 133 EEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~ 150 (317)
.++.|++|+||-+.++..
T Consensus 94 ~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 94 DRDSASLVVVDSFTALYR 111 (209)
T ss_pred hhcCccEEEEeCcHHHhH
Confidence 666789999999999864
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >KOG1970|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00067 Score=66.51 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=24.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
..|+.||+|||||| .+|.++|..++.-+
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 46789999999999 99999999887754
|
|
| >KOG2228|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0021 Score=59.78 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=82.6
Q ss_pred hHHHhhhcCCCchh----hh--hhcCCceEEEE--echhhh-------------------hhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL----AV--ANQTSATFLRV--VGSELI-------------------QKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----ai--A~~~~~~~~~v--~~s~l~-------------------~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+++.||.|+|||. .+ +++.|-+|+.+ ++.-.. .+..|.....+..+....+.
T Consensus 51 sviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~ 130 (408)
T KOG2228|consen 51 SVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKK 130 (408)
T ss_pred ceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhc
Confidence 46788999999998 33 44667676655 332111 12345555556555554443
Q ss_pred h-----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 135 H-----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 135 ~-----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
. .|.|.++||+|.+++.. -+..+..+.+. .++.. .++.+|+.|.
T Consensus 131 ~~~~t~~~ViFIldEfDlf~~h~----------rQtllYnlfDi---sqs~r------------------~Piciig~Tt 179 (408)
T KOG2228|consen 131 GDETTSGKVIFILDEFDLFAPHS----------RQTLLYNLFDI---SQSAR------------------APICIIGVTT 179 (408)
T ss_pred CCCCCCceEEEEeehhhccccch----------hhHHHHHHHHH---HhhcC------------------CCeEEEEeec
Confidence 2 13355568999997653 12333444443 32221 6799999998
Q ss_pred CCCC---CCccccCCCcceeE-EEeCCC-CHHHHHHHHHHHh
Q psy7780 210 RIET---LDPALIRPGRIDRK-IEFPLP-DEKTKRRIFNIHT 246 (317)
Q Consensus 210 ~~~~---Ld~al~rpgRf~~~-I~~~~P-~~~~r~~Il~~~l 246 (317)
+.+. |...+.+ ||..+ |+++++ ..++-..+++..+
T Consensus 180 rld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 8765 5678888 99655 887766 5677788888776
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00022 Score=66.76 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=43.4
Q ss_pred hHHHhhhcCCCchh----hh--hhcCCceEEEEechhhhh----------------hhcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL----AV--ANQTSATFLRVVGSELIQ----------------KYLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----ai--A~~~~~~~~~v~~s~l~~----------------~~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||||||+ .+ +...+...++++..+-.+ ......+..+..+-..++...+.+
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 46789999999999 12 233456666776532111 011122334444444456677899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||-+-++.+.
T Consensus 137 IVIDSvaal~~~ 148 (325)
T cd00983 137 IVVDSVAALVPK 148 (325)
T ss_pred EEEcchHhhccc
Confidence 999999999864
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00037 Score=72.56 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=107.0
Q ss_pred HhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhh-CCceEeecccccc
Q psy7780 85 IQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEIDAV 148 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEiD~l 148 (317)
+.|.||+|||. -+|+.. +..++.++...+. .++.|+.+..++.+.+.+... ...||||||++.+
T Consensus 213 LVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~l 292 (898)
T KOG1051|consen 213 LVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWL 292 (898)
T ss_pred EEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeee
Confidence 56999999998 333332 3466777766554 357889999999999998844 4567899999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCc
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGR 223 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgR 223 (317)
...... .+..+....|..+|.. +.+.+|+||..-+ .=||++-| |
T Consensus 293 vg~g~~---~~~~d~~nlLkp~L~r--------------------------g~l~~IGatT~e~Y~k~iekdPalEr--r 341 (898)
T KOG1051|consen 293 VGSGSN---YGAIDAANLLKPLLAR--------------------------GGLWCIGATTLETYRKCIEKDPALER--R 341 (898)
T ss_pred ecCCCc---chHHHHHHhhHHHHhc--------------------------CCeEEEecccHHHHHHHHhhCcchhh--C
Confidence 866532 1122333444444433 5688999886322 25899999 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----cC---CCHHHHH--HhCCCCCHHHHHHHHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----ED---VNLQELI--MAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----~~---~~~~~ia--~~t~g~s~~dl~~l~~~A~~~a 283 (317)
|+ .+.++.|+.+.-..||+....+.-.. .+ +....+. ..+..+-|.-...++.+|+...
T Consensus 342 w~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~ 410 (898)
T KOG1051|consen 342 WQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALV 410 (898)
T ss_pred cc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHH
Confidence 97 78889999887777777665542111 11 1111111 2244455666667777776543
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00025 Score=66.25 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=54.2
Q ss_pred hHHHhhhcCCCchh----hhh--hcCCceEEEEechhhhh----------------hhcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL----AVA--NQTSATFLRVVGSELIQ----------------KYLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA--~~~~~~~~~v~~s~l~~----------------~~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||||||+ .++ ...+...+++++.+-.+ ......+..+..+....+...+.+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 46789999999999 122 22355666665533211 011122334444444556678999
Q ss_pred EeecccccccccccCCCC---CchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGTKRYDSNS---GGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|+||-+-++.+...-.+. .......+.+.+++..+.+.-..
T Consensus 137 IVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~ 180 (321)
T TIGR02012 137 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSK 180 (321)
T ss_pred EEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999864321111 11112234455666555554433
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00024 Score=55.60 Aligned_cols=12 Identities=25% Similarity=0.077 Sum_probs=11.0
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
.|+|+||+|||+
T Consensus 2 ~i~G~~G~GKS~ 13 (107)
T PF00910_consen 2 WIYGPPGIGKST 13 (107)
T ss_pred EEECCCCCCHHH
Confidence 479999999998
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0015 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCCceEeecccccccc
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
..+...+....|.+|+||++..+..
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 4455555677899999999998764
|
A related protein is found in archaea. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00077 Score=66.07 Aligned_cols=71 Identities=27% Similarity=0.336 Sum_probs=48.3
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh------cCC--------chHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY------LGD--------GPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~------~g~--------~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..+++|+||+|||+ .+|.. .+..+++++..+-.... .|. .+..+..+++..++..|.+|+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVV 161 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVV 161 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEE
Confidence 56899999999999 33332 25677787764422211 111 123466777778888899999
Q ss_pred ecccccccccc
Q psy7780 142 IDEIDAVGTKR 152 (317)
Q Consensus 142 iDEiD~l~~~r 152 (317)
||++..+....
T Consensus 162 IDSIq~l~~~~ 172 (446)
T PRK11823 162 IDSIQTMYSPE 172 (446)
T ss_pred Eechhhhcccc
Confidence 99999987543
|
|
| >KOG2680|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=60.33 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
|..||-.++. |+ ..|...+++.++.++||++......+.- +..++-+......-|-+---+|+..|.+.|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 5668888998 87 4778888899999999999876544432 222333444444556667778899999999999999
Q ss_pred CcCHHHHHHHHHHHHhhhcc
Q psy7780 290 KVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 290 ~it~~d~~~al~~v~~~~~~ 309 (317)
.+..+|+.++.+-.+..+++
T Consensus 416 ~v~~~di~r~y~LFlD~~Rs 435 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLDEKRS 435 (454)
T ss_pred eeehhHHHHHHHHHhhhhhh
Confidence 99999999999887765554
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=61.36 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=76.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------------eEEEEe--chhhhhhhcCCchHHHHHHHHHHHh-----hCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------------TFLRVV--GSELIQKYLGDGPKLVRELFRVAEE-----HAPS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------------~~~~v~--~s~l~~~~~g~~~~~l~~~f~~a~~-----~~P~ 138 (317)
.+||+|+.|.||+. .+|+.+-+ .++.++ +.. -+-..++++.+.+.. ...-
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcccCCce
Confidence 57899999999998 44444311 233333 211 122456665555422 2346
Q ss_pred eEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 139 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 139 Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
|++||++|.+... ....|...|++ .. ..+++|.+|+.++.|-|.+
T Consensus 93 vvII~~~e~m~~~-----------a~NaLLK~LEE---Pp---------------------~~t~~il~~~~~~kll~TI 137 (299)
T PRK07132 93 ILIIKNIEKTSNS-----------LLNALLKTIEE---PP---------------------KDTYFLLTTKNINKVLPTI 137 (299)
T ss_pred EEEEecccccCHH-----------HHHHHHHHhhC---CC---------------------CCeEEEEEeCChHhChHHH
Confidence 9999999876321 23344444444 22 5677888888889999999
Q ss_pred cCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 219 IRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
++ |+. .++|++|+.++..+.+..
T Consensus 138 ~S--Rc~-~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 138 VS--RCQ-VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred Hh--CeE-EEECCCCCHHHHHHHHHH
Confidence 99 885 799999998888777664
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0002 Score=68.18 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
+..++|++|+|||+
T Consensus 64 GlYl~G~vG~GKT~ 77 (362)
T PF03969_consen 64 GLYLWGPVGRGKTM 77 (362)
T ss_pred eEEEECCCCCchhH
Confidence 56799999999998
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00019 Score=66.06 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc----------------eEEEEechhhhhhhcCCchHHHHHHHHHHHhh----CCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA----------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEEH----APS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~----------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~ 138 (317)
.+||+||+|+||+. ++|..+-+ .++.+.... -++ .-+-..+|++-+.+... ..-
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGR--LHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCC--cCcHHHHHHHHHHHhhCccCCCce
Confidence 57899999999998 44444422 122221100 000 01244566666555432 235
Q ss_pred eEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 139 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 139 Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
|++||++|.+... .++.|..+|++ - |.++++|..|+.++.|.|.+
T Consensus 98 v~ii~~ad~mt~~-----------AaNaLLK~LEE---P---------------------p~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 98 IYIIHEADRMTLD-----------AISAFLKVLED---P---------------------PQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred EEEEechhhcCHH-----------HHHHHHHHhhc---C---------------------CCCeEEEEEeCChhhCcHHH
Confidence 9999999998532 24555555555 2 26788999999999999999
Q ss_pred cCCCcceeEEEeCCC
Q psy7780 219 IRPGRIDRKIEFPLP 233 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P 233 (317)
++ |+. .+.|+++
T Consensus 143 ~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 143 RS--RSL-SIHIPME 154 (290)
T ss_pred Hh--cce-EEEccch
Confidence 99 995 7778765
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00063 Score=62.12 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC----CCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 201 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT----LAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 201 ~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~----~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
+..+|.||...... ...- .-...++++..+.++..++|+....... ........+|++.+.| .|--|..+
T Consensus 129 ~~kilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 129 GSKILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp S-EEEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 45577788654322 1121 1146899999999999999999865433 1112235678888877 46555544
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.014 Score=57.93 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=84.8
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
|+|++|.|++.++.. ..+.+.+..+....... ++.+||.+. ...+|+
T Consensus 82 ~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~~~----------------------~~~~i~~~~--~~~~p~ 128 (489)
T CHL00195 82 PALFLLKDFNRFLND---------ISISRKLRNLSRILKTQ----------------------PKTIIIIAS--ELNIPK 128 (489)
T ss_pred CcEEEEecchhhhcc---------hHHHHHHHHHHHHHHhC----------------------CCEEEEEcC--CCCCCH
Confidence 789999999999832 23455555555443332 334444444 356787
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d 295 (317)
.|.+ +-.++.+|+|+.+++.++++.+....+.. ++.+++.+++.+.|+|-.++++++..+.. . ...++.++
T Consensus 129 el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~-~~~~~~~~ 200 (489)
T CHL00195 129 ELKD---LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----T-YKTIDENS 200 (489)
T ss_pred HHHh---ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----H-cCCCChhh
Confidence 8775 44688999999999999998887644333 45567889999999999999999886432 1 23466666
Q ss_pred HHHHHH
Q psy7780 296 FKKSKE 301 (317)
Q Consensus 296 ~~~al~ 301 (317)
+...++
T Consensus 201 ~~~i~~ 206 (489)
T CHL00195 201 IPLILE 206 (489)
T ss_pred HHHHHH
Confidence 554443
|
|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.001 Score=58.99 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=47.3
Q ss_pred HHHhhhcCCCchh-hhhhcCCceEEEEechh-hhhh---------hcCCchHHHHHHHHHHHh--hCCceEeeccccccc
Q psy7780 83 ELIQKYLGDGPKL-AVANQTSATFLRVVGSE-LIQK---------YLGDGPKLVRELFRVAEE--HAPSIVFIDEIDAVG 149 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-aiA~~~~~~~~~v~~s~-l~~~---------~~g~~~~~l~~~f~~a~~--~~P~Ii~iDEiD~l~ 149 (317)
+||||+||+|||+ |-.-.-...++..+.+. .+.. -....-..+.+.+..+.. ....+|+||.++.+.
T Consensus 15 ~liyG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~ 94 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQ 94 (220)
T ss_pred EEEECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHH
Confidence 5799999999999 22211224455554432 1110 011112233344443332 335799999999875
Q ss_pred c------cccC-C---CCCchhHHHHHHHHHHHHhcC
Q psy7780 150 T------KRYD-S---NSGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 150 ~------~r~~-~---~~~~~~~~~~~l~~ll~~ld~ 176 (317)
. .+.. . ...+-..+...+..++..+..
T Consensus 95 ~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~ 131 (220)
T TIGR01618 95 NLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE 131 (220)
T ss_pred HHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 4 2211 1 112224455556666666554
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=62.35 Aligned_cols=71 Identities=28% Similarity=0.331 Sum_probs=47.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------hcCC--------chHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------YLGD--------GPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------~~g~--------~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..+++|+||+|||+ .+|... +..++++++.+-... ..|. .+..+..+++.+....|.+|+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVV 163 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVI 163 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEE
Confidence 56899999999999 344332 346777765431111 1121 133466777778888999999
Q ss_pred ecccccccccc
Q psy7780 142 IDEIDAVGTKR 152 (317)
Q Consensus 142 iDEiD~l~~~r 152 (317)
||++..+....
T Consensus 164 IDSIq~l~~~~ 174 (372)
T cd01121 164 IDSIQTVYSSE 174 (372)
T ss_pred EcchHHhhccc
Confidence 99999986543
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=63.84 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.9
Q ss_pred HhCCCCCHHHHHHHHHHHH-HHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 262 MAKDDLSGADIKAICTEAG-LMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 262 ~~t~g~s~~dl~~l~~~A~-~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
....+++.+|..++-+... +.-+---...++.+|++++++-.+..++
T Consensus 391 ~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~Rr 438 (449)
T TIGR02688 391 SLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEGRQ 438 (449)
T ss_pred ecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456789999888766543 2223234567999999999988887654
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.024 Score=53.45 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=87.1
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhhhhh------------------cC-------------CchHHH
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQKY------------------LG-------------DGPKLV 125 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~~~------------------~g-------------~~~~~l 125 (317)
..++||..+|||+ .-++..|...+.+++..+-+.. .+ ......
T Consensus 34 ~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~ 113 (331)
T PF14516_consen 34 IRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISC 113 (331)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhH
Confidence 4578999999999 3344457888888776532110 00 011223
Q ss_pred HHHHHHH---HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCe
Q psy7780 126 RELFRVA---EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDV 202 (317)
Q Consensus 126 ~~~f~~a---~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v 202 (317)
...|+.. ....|-||+|||+|.++... .-..+....+..+.++-. .... ...+
T Consensus 114 ~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~---~~~~----------------~~~L 169 (331)
T PF14516_consen 114 TEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRK---NNPI----------------WQKL 169 (331)
T ss_pred HHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcc---cCcc----------------cceE
Confidence 3334431 12358899999999997532 111122222222222111 0000 0223
Q ss_pred EEEEEcCCCCCCCccc-cCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 203 KVIMATNRIETLDPAL-IRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al-~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
.+|++......+.... .+|=-+...|.++.-+.++...+++.|-... ... .++.+-..|.| -|.=+..+|..
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~~~-~~~~l~~~tgG-hP~Lv~~~~~~ 242 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--SQE-QLEQLMDWTGG-HPYLVQKACYL 242 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--CHH-HHHHHHHHHCC-CHHHHHHHHHH
Confidence 3333332222222222 2332344577888889999999998874332 222 27788888888 35455544443
|
|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00058 Score=60.45 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=38.7
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechhh----hhhhcCC-------------------chHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSEL----IQKYLGD-------------------GPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l----~~~~~g~-------------------~~~~l~~~f~~a 132 (317)
-.+++|+||+|||+ .+|. ..+...+++++..+ +....+. ....++.+....
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 104 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEKLA 104 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHHHHHH
Confidence 35789999999998 3332 23566777766521 1100110 011122222222
Q ss_pred HhhCCceEeeccccccccc
Q psy7780 133 EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~ 151 (317)
. ..+.+|+||-+.++...
T Consensus 105 ~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 105 K-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred H-hcccEEEEeCcHHHhHH
Confidence 2 57899999999998754
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0012 Score=67.08 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.|.++|.++++-|-..|-.+-...|+.+|+.+|++-+..
T Consensus 556 iT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~ 594 (682)
T COG1241 556 ITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDF 594 (682)
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 789999999998888888888899999999999988773
|
|
| >KOG0478|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0025 Score=64.02 Aligned_cols=83 Identities=27% Similarity=0.408 Sum_probs=47.2
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---- 213 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---- 213 (317)
.|-.|||+|.+... ..++|-+.+++-.- . .-+.+-..-++.+.-|||++|..+.
T Consensus 528 GiCCIDEFDKM~dS-----------trSvLhEvMEQQTv-S----------IAKAGII~sLNAR~SVLAaANP~~skynp 585 (804)
T KOG0478|consen 528 GICCIDEFDKMSDS-----------TRSVLHEVMEQQTL-S----------IAKAGIIASLNARCSVLAAANPIRSKYNP 585 (804)
T ss_pred ceEEchhhhhhhHH-----------HHHHHHHHHHHhhh-h----------HhhcceeeeccccceeeeeeccccccCCC
Confidence 47789999998322 13455565554210 0 0011111233456669999996432
Q ss_pred ---------CCccccCCCcceeEE-EeCCCCHHHHHHHHHH
Q psy7780 214 ---------LDPALIRPGRIDRKI-EFPLPDEKTKRRIFNI 244 (317)
Q Consensus 214 ---------Ld~al~rpgRf~~~I-~~~~P~~~~r~~Il~~ 244 (317)
|+|.|++ |||.+. -+..|++..=+.|-..
T Consensus 586 ~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 586 NKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred CCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 8999999 999554 3455665433344333
|
|
| >KOG0480|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=64.66 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=87.2
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---- 213 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---- 213 (317)
.|-.|||+|..-.+. +..+-+.+++ ..-+ ..+.+...-++.+--+|||+|....
T Consensus 444 GICCIDEFDKMd~~d-----------qvAihEAMEQ---QtIS--------IaKAGv~aTLnARtSIlAAANPv~GhYdR 501 (764)
T KOG0480|consen 444 GICCIDEFDKMDVKD-----------QVAIHEAMEQ---QTIS--------IAKAGVVATLNARTSILAAANPVGGHYDR 501 (764)
T ss_pred ceEEechhcccChHh-----------HHHHHHHHHh---heeh--------heecceEEeecchhhhhhhcCCcCCcccc
Confidence 588999999874322 2333344443 1111 1122223344456668999988643
Q ss_pred ---------CCccccCCCcceeE-EEeCCCCHHHHHHHHHHHhcCCC-CCcC------CCH-------------------
Q psy7780 214 ---------LDPALIRPGRIDRK-IEFPLPDEKTKRRIFNIHTSRMT-LAED------VNL------------------- 257 (317)
Q Consensus 214 ---------Ld~al~rpgRf~~~-I~~~~P~~~~r~~Il~~~l~~~~-~~~~------~~~------------------- 257 (317)
+.+++++ |||.. |-+..|++..=..|-+..+.... ++.. ...
T Consensus 502 ~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ 579 (764)
T KOG0480|consen 502 KKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSK 579 (764)
T ss_pred ccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccH
Confidence 7899999 99943 45667877666666555443210 0000 000
Q ss_pred ---HHHHH---------------hCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 258 ---QELIM---------------AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 258 ---~~ia~---------------~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+.+ .+.+.|-++|+.+++-+-..|.-+-+..+|.+|+++|.+-+.+
T Consensus 580 ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 580 EASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 11111 1236889999999997776776677889999999999987654
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=58.11 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCeEEEEEc--CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC------CCC-cCCCHHHHHHhCCCCCHH
Q psy7780 200 GDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM------TLA-EDVNLQELIMAKDDLSGA 270 (317)
Q Consensus 200 ~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~------~~~-~~~~~~~ia~~t~g~s~~ 270 (317)
+.|++|+|| |..-.+.+||++ |+ +++.+.+++.++...++++.+... .+. ++..+..|+..+.|
T Consensus 7 G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G---- 79 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG---- 79 (300)
T ss_pred CcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC----
Confidence 789999888 778889999999 99 589999999999999999887531 111 22335556666555
Q ss_pred HHHHHHH---HHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 271 DIKAICT---EAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 271 dl~~l~~---~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
|.+..++ .|...+.......||.+++++++.+....+
T Consensus 80 DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~y 119 (300)
T PRK14700 80 DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDF 119 (300)
T ss_pred HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcc
Confidence 6554444 333211111122499999999887654444
|
|
| >COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0027 Score=68.66 Aligned_cols=178 Identities=16% Similarity=0.082 Sum_probs=101.2
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC--------C------ceEeec
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA--------P------SIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~--------P------~Ii~iD 143 (317)
.++|.||||+|||+ ++-+++-..++.++.+.-. .++..++.+-+...... | -|+|.|
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 57899999999999 7888888888888765421 12333333322221111 1 289999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC-----ccc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD-----PAL 218 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld-----~al 218 (317)
||. .+....-.... .=.+..-|-+-+|+.+.....-. -=.++++.+++|.+...- ..+
T Consensus 1571 eIn--Lp~~~~y~~~~----vI~FlR~l~e~QGfw~s~~~~wv-----------TI~~i~l~Gacnp~td~gRv~~~eRf 1633 (3164)
T COG5245 1571 EIN--LPYGFEYYPPT----VIVFLRPLVERQGFWSSIAVSWV-----------TICGIILYGACNPGTDEGRVKYYERF 1633 (3164)
T ss_pred ccC--CccccccCCCc----eEEeeHHHHHhcccccchhhhHh-----------hhcceEEEccCCCCCCcccCccHHHH
Confidence 999 33321111111 11222233344666654221111 116799999999876532 334
Q ss_pred cCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-C------------CCHH--------HHHHhCCCCCHHHHHHHHH
Q psy7780 219 IRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-D------------VNLQ--------ELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~------------~~~~--------~ia~~t~g~s~~dl~~l~~ 277 (317)
+| | ...+++.+|.......|...++.+.-+.. + +.+- ...+.-.+|+|+|+...++
T Consensus 1634 ~r--~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr 1710 (3164)
T COG5245 1634 IR--K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLR 1710 (3164)
T ss_pred hc--C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHH
Confidence 43 2 25688999999999999988876532211 0 0000 0011125899999999988
Q ss_pred HHHHHHH
Q psy7780 278 EAGLMAL 284 (317)
Q Consensus 278 ~A~~~a~ 284 (317)
.--..|-
T Consensus 1711 ~i~~yae 1717 (3164)
T COG5245 1711 AIFGYAE 1717 (3164)
T ss_pred HHHhHHh
Confidence 4444443
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=58.34 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
.-|++|+++|.+... ....|..+|++ - |.++++|.+|+.++.+.|
T Consensus 89 ~KV~II~~ae~m~~~-----------AaNaLLK~LEE---P---------------------p~~t~fiLit~~~~~lLp 133 (261)
T PRK05818 89 KKIYIIYGIEKLNKQ-----------SANSLLKLIEE---P---------------------PKNTYGIFTTRNENNILN 133 (261)
T ss_pred CEEEEeccHhhhCHH-----------HHHHHHHhhcC---C---------------------CCCeEEEEEECChHhCch
Confidence 469999999988432 23444444444 2 267889999999999999
Q ss_pred cccCCCcceeEEEeCCC
Q psy7780 217 ALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P 233 (317)
.+++ |+. .+.|+.+
T Consensus 134 TI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 134 TILS--RCV-QYVVLSK 147 (261)
T ss_pred Hhhh--hee-eeecCCh
Confidence 9999 985 5777776
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0014 Score=61.90 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=42.4
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEechhhhh------------h----hcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQ------------K----YLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~------------~----~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||||||+ +-+...|-..++++..+-.+ . .....+..+..+-...+...+.+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 46789999999999 22233466666665533111 0 01112333333334455677899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||=+-++.+.
T Consensus 142 IVIDSvaaL~~~ 153 (349)
T PRK09354 142 IVVDSVAALVPK 153 (349)
T ss_pred EEEeChhhhcch
Confidence 999999999863
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0028 Score=55.69 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=19.5
Q ss_pred HHHhhhcCCCchh---hhhhc---CCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQ---TSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~ 110 (317)
.+++|+||+|||+ .+|.+ .+.+.++++.
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 5689999999999 33332 2556666654
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=59.26 Aligned_cols=154 Identities=22% Similarity=0.315 Sum_probs=93.2
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC--CCCC
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI--ETLD 215 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~--~~Ld 215 (317)
-||||||+..|.... ....|..++..-.-...+.. +....-+..-..|.++.+|+..|+- ..+.
T Consensus 227 GVLiIdei~lL~~~~----------~w~~LKa~~~k~~~~~~~~~----~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~ 292 (647)
T COG1067 227 GVLIIDEIGLLAQPL----------QWKLLKALLDKEQPIWGSSE----PSSGAPVRPESVPLDLKLILAGNREDLEDLH 292 (647)
T ss_pred cEEEEEhhhhhCcHH----------HHHHHHHHHhccccccCcCc----cccCcccCCCCcccceEEEeeCCHHHHHhhc
Confidence 599999999886332 23444444433111111100 0011223345566788899999873 3344
Q ss_pred c---cccCCCcceeEEEe--CCC-CHHHHHHHHHHHhcCCCCC------cCCCHHHHH----HhCC-----CCCHHHHHH
Q psy7780 216 P---ALIRPGRIDRKIEF--PLP-DEKTKRRIFNIHTSRMTLA------EDVNLQELI----MAKD-----DLSGADIKA 274 (317)
Q Consensus 216 ~---al~rpgRf~~~I~~--~~P-~~~~r~~Il~~~l~~~~~~------~~~~~~~ia----~~t~-----g~s~~dl~~ 274 (317)
+ .++. =|....+| +.| +.+.|.++++.+.+.+..+ ....+..|. +++. -.+++||.+
T Consensus 293 ~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~ 370 (647)
T COG1067 293 EPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGN 370 (647)
T ss_pred ccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHH
Confidence 4 4443 24444555 456 7799999998886543211 111222222 2221 268999999
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 275 ICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 275 l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
++++|+..|..+++..|+.+|+++|+++.....
T Consensus 371 lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e 403 (647)
T COG1067 371 LVREAGDIAVSEGRKLITAEDVEEALQKRELRE 403 (647)
T ss_pred HHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999855433
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0021 Score=54.44 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 204 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.|.-.|....++..+ . ++|..|++..|...-...+++..++
T Consensus 62 wVidG~~~~~~~~~l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 62 WIIDGNYGGTMDIRL-N--AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred EEEeCCcchHHHHHH-H--hCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 555666666666444 3 6899999999988777888888765
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0051 Score=67.26 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCH----HHHHHhCCCCC
Q psy7780 203 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNL----QELIMAKDDLS 268 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~----~~ia~~t~g~s 268 (317)
.||.||.+.. +.+...+++.++++.|+.++..+++..+.-+.... ..++ .++++++.|+.
T Consensus 326 rIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 326 RIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAGNLP 389 (1153)
T ss_pred EEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCc
Confidence 3667776533 33322467789999999999999998875432211 1222 34556667654
|
syringae 6; Provisional |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0049 Score=56.39 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=38.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc----------eEEEEe-chhhhhhhc-------CC------chHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA----------TFLRVV-GSELIQKYL-------GD------GPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~----------~~~~v~-~s~l~~~~~-------g~------~~~~l~~~f~~a~~ 134 (317)
..++.||||+|||| +++..+.- .+..++ ..++...+. |. .......++..++.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~ 192 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRS 192 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHh
Confidence 34788999999999 77776632 332222 223322211 11 11123346667777
Q ss_pred hCCceEeeccc
Q psy7780 135 HAPSIVFIDEI 145 (317)
Q Consensus 135 ~~P~Ii~iDEi 145 (317)
+.|.||++||+
T Consensus 193 ~~P~villDE~ 203 (270)
T TIGR02858 193 MSPDVIVVDEI 203 (270)
T ss_pred CCCCEEEEeCC
Confidence 89999999995
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0011 Score=57.69 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=39.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC----ceEEEEech-hhh---------hhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS----ATFLRVVGS-ELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~----~~~~~v~~s-~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|-+++.||+|+|||| +++.++. ..++.+..+ ++. ...+|.......+.+..+....|.+|++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 446789999999999 5555553 223332211 211 11123333445666677777889999999
Q ss_pred cc
Q psy7780 144 EI 145 (317)
Q Consensus 144 Ei 145 (317)
|+
T Consensus 82 Ei 83 (198)
T cd01131 82 EM 83 (198)
T ss_pred CC
Confidence 97
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0048 Score=53.36 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHhhhcCCCchh---hhhh---cCCceEEEEech-h-------hhhhhcCCc-----hHHHHHHHHHHHh--hCCceEe
Q psy7780 83 ELIQKYLGDGPKL---AVAN---QTSATFLRVVGS-E-------LIQKYLGDG-----PKLVRELFRVAEE--HAPSIVF 141 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s-~-------l~~~~~g~~-----~~~l~~~f~~a~~--~~P~Ii~ 141 (317)
.+++|+||+|||+ .++. ..+..++.++++ + +.+ ..|.. .....++++.++. ..+.+|+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 5689999999998 2222 235555555431 1 111 11211 1123445554433 4567999
Q ss_pred ecccccc
Q psy7780 142 IDEIDAV 148 (317)
Q Consensus 142 iDEiD~l 148 (317)
|||+..+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999544
|
|
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00078 Score=61.47 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
.+||.||||||||. ++++|+| .||..+.+|++.+..+..++ .+.+-|.+|
T Consensus 66 avLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTE-vLmenfRRa 120 (456)
T KOG1942|consen 66 AVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTE-VLMENFRRA 120 (456)
T ss_pred EEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHH-HHHHHHHHH
Confidence 68999999999998 9999996 68999999999887666555 445556665
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0058 Score=56.94 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCC-CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPG 200 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (317)
+...++..+.|..+ .||||||||.++.+.+..+ +-+..-+|+ .+|-.+.|..-+... + ....+
T Consensus 238 e~i~~eAi~~aE~~--GIvFIDEIDKIa~~~~~g~~dvSREGVQR---DlLPlvEGstV~TKy--G---------~VkTd 301 (444)
T COG1220 238 EEIKQEAIDAAEQN--GIVFIDEIDKIAKRGGSGGPDVSREGVQR---DLLPLVEGSTVSTKY--G---------PVKTD 301 (444)
T ss_pred HHHHHHHHHHHHhc--CeEEEehhhHHHhcCCCCCCCcchhhhcc---cccccccCceeeccc--c---------ccccc
Confidence 34445555656555 6999999999998764222 222233444 444445554322000 0 11126
Q ss_pred CeEEEEEc----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 201 DVKVIMAT----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 201 ~v~vI~tT----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
++++|++- ..|+.|=|.|.- ||..++++...+.+.-..||.
T Consensus 302 HILFIasGAFh~sKPSDLiPELQG--RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 302 HILFIASGAFHVAKPSDLIPELQG--RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEEecCceecCChhhcChhhcC--CCceEEEcccCCHHHHHHHHc
Confidence 78999875 568888889976 999999999999998888874
|
|
| >KOG2170|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0081 Score=55.12 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHhhhcCCCchh---hhhhcCC-----ceEEEE-----ec--hhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 84 LIQKYLGDGPKL---AVANQTS-----ATFLRV-----VG--SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~-----~~~~~v-----~~--s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
-|+|++||||.. .+|+.+- .+++.. ++ ..-++.|. ++.-..+-..++.++.+|.++||+|.+
T Consensus 114 SfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 114 SFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred EecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH---HHHHHHHHHHHHhcCCceEEechhhhc
Confidence 389999999998 7887652 122111 01 11122222 222233444566777899999999998
Q ss_pred c
Q psy7780 149 G 149 (317)
Q Consensus 149 ~ 149 (317)
-
T Consensus 191 p 191 (344)
T KOG2170|consen 191 P 191 (344)
T ss_pred C
Confidence 4
|
|
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0057 Score=58.36 Aligned_cols=153 Identities=22% Similarity=0.315 Sum_probs=91.3
Q ss_pred ceEeechh-------hHHHhhhcCCCchh---hhhhcC--CceEEEEechhhhh------hhcC--------CchHHHHH
Q psy7780 74 ATFLRVVG-------SELIQKYLGDGPKL---AVANQT--SATFLRVVGSELIQ------KYLG--------DGPKLVRE 127 (317)
Q Consensus 74 ~~~~~i~g-------~~Ll~G~pGtGKT~---aiA~~~--~~~~~~v~~s~l~~------~~~g--------~~~~~l~~ 127 (317)
..|+++-| .+|+-|-||.|||| .+|..+ ...+.+|++.+=.. +-.| -.+.++.+
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~ 159 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLED 159 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHH
Confidence 45677655 57888999999999 333222 22788998754222 2222 23667899
Q ss_pred HHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA 207 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t 207 (317)
+.+.+.+..|.+++||-|..+....-++..+.-.++.....+++.. ....+ -.+++++.
T Consensus 160 I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~-AK~~~--------------------i~~fiVGH 218 (456)
T COG1066 160 IIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL-AKTKN--------------------IAIFIVGH 218 (456)
T ss_pred HHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH-HHHcC--------------------CeEEEEEE
Confidence 9999999999999999999998765443344333333333333332 11110 23556665
Q ss_pred cCCCCCC-CccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC
Q psy7780 208 TNRIETL-DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 249 (317)
Q Consensus 208 TN~~~~L-d~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~ 249 (317)
...--.| -|.++- +-.|.+++|.- ++.....|++.+-+++
T Consensus 219 VTKeG~IAGPrvLE-HmVDtVlyFEG-d~~~~~RiLR~vKNRF 259 (456)
T COG1066 219 VTKEGAIAGPRVLE-HMVDTVLYFEG-DRHSRYRILRSVKNRF 259 (456)
T ss_pred EcccccccCchhee-eeeeEEEEEec-cCCCceeeeehhcccC
Confidence 5544333 233333 13567777754 5556677777665444
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.003 Score=53.70 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 204 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.|.-.|....+-+..+. ++|.+|.+..|...-...+++....
T Consensus 61 wIidg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 61 WIIDGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred EEEcCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 44444444434334445 7899999999988888888888764
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0012 Score=58.50 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+++.|+||||||+ ++|++++
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999 7777765
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00067 Score=53.66 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
+++.|+||+|||| .+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 3578999999999 899999988776543
|
... |
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.005 Score=58.90 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=27.8
Q ss_pred EEEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEe
Q psy7780 3 VGTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLN 47 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~ 47 (317)
+.-+.|++.++.....+. .++.-+.--.+.+.+..|+.||.|.-.
T Consensus 51 ~~g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~ 100 (416)
T PRK09376 51 GEGVLEILPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFNLRTGDTVEGK 100 (416)
T ss_pred EEEEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 455778887776665542 222222222566777889999998753
|
|
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.064 Score=50.05 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=68.4
Q ss_pred HHHHHHHHHh--h-CCceEeecccccccccccCCCC---CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 125 VRELFRVAEE--H-APSIVFIDEIDAVGTKRYDSNS---GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 125 l~~~f~~a~~--~-~P~Ii~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
+..++++... . .|.++-+|++.+++....--.. .-...-..+...|+..+.+-..-.
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~----------------- 204 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFK----------------- 204 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccC-----------------
Confidence 4444444432 2 4778899999999876321111 112222334445555444333221
Q ss_pred CCCeEE--EEEcCC---CC--CCCccccCCCc------ce-------------eEEEeCCCCHHHHHHHHHHHhcCCCCC
Q psy7780 199 PGDVKV--IMATNR---IE--TLDPALIRPGR------ID-------------RKIEFPLPDEKTKRRIFNIHTSRMTLA 252 (317)
Q Consensus 199 ~~~v~v--I~tTN~---~~--~Ld~al~rpgR------f~-------------~~I~~~~P~~~~r~~Il~~~l~~~~~~ 252 (317)
+..+| +++|.. +. .++.++..... |. ..|+++..+.+|-..+++.+...--+.
T Consensus 205 -nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 205 -NGAVVTALAATSVSNAPKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred -CCeEEEEEeccccccccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 33333 555532 33 56666664111 11 268999999999999999987654333
Q ss_pred c---CCCHHHHHHhCCCCCHHHHHH
Q psy7780 253 E---DVNLQELIMAKDDLSGADIKA 274 (317)
Q Consensus 253 ~---~~~~~~ia~~t~g~s~~dl~~ 274 (317)
. +....+--..+.|-+|+++.+
T Consensus 284 ~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 284 SRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred cCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 2 111222222234557777653
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0084 Score=53.52 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEech----hhhhhh--cC-------------------------CchHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGS----ELIQKY--LG-------------------------DGPKL 124 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s----~l~~~~--~g-------------------------~~~~~ 124 (317)
..++.|+||||||+ .++. .-+...++++.. +++... .| +....
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRKF 105 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHHHH
Confidence 36789999999999 2222 225566666542 111110 00 01334
Q ss_pred HHHHHHHHHhhCCceEeeccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+..+.+.+....|.++++||+-.+.
T Consensus 106 l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 106 LKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHhcCCCEEEEECccHHh
Confidence 4555666666678999999998875
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=14.7
Q ss_pred HHHHHHHHhhCCceEeecccccc
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
-...+.|.+.+ .+|+||||..+
T Consensus 91 ~~al~rA~~~a-DvIIIDEIGpM 112 (179)
T COG1618 91 IPALRRALEEA-DVIIIDEIGPM 112 (179)
T ss_pred HHHHHHHhhcC-CEEEEecccch
Confidence 33445555554 79999999765
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0069 Score=51.40 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=24.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||+ .+|+.++++|+..+
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4678999999999 99999999988876
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0096 Score=58.53 Aligned_cols=70 Identities=29% Similarity=0.275 Sum_probs=44.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh------hcCC--------chHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK------YLGD--------GPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~------~~g~--------~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..++.|+||+|||+ .+|.. .+.+++++++.+-... -.|- .+..+..+.+.+.+..|.+|+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vV 175 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQACV 175 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEE
Confidence 57899999999999 33222 2346777765332111 0111 123456667777788899999
Q ss_pred eccccccccc
Q psy7780 142 IDEIDAVGTK 151 (317)
Q Consensus 142 iDEiD~l~~~ 151 (317)
||.|-.+...
T Consensus 176 IDSIq~l~~~ 185 (454)
T TIGR00416 176 IDSIQTLYSP 185 (454)
T ss_pred Eecchhhccc
Confidence 9999988643
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.11 Score=48.02 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..+|++-+.+.. ....|++||++|.+... ..+.|...|++ -.
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLEE---Pp------------------- 132 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-----------AANSLLKVIEE---PQ------------------- 132 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-----------HHHHHHHHhcC---CC-------------------
Confidence 3567776665543 22369999999998532 23444444444 21
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
.++++|.+|+.++.|-|.+++ |+. .|.|+. +.++..+++.
T Consensus 133 --~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 133 --SEIYIFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred --CCeEEEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHH
Confidence 568899999999999999999 994 788876 5565555554
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.011 Score=50.27 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=51.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh-----------------hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK-----------------YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~-----------------~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
.|+.|+||+|||+ .++...+.+.+++....-.+. ...|....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 4678999999999 555556667777754432211 12233445555543222 4679999
Q ss_pred cccccccccccCCCCCc-hhHHHHHHHHHHHHhcC
Q psy7780 143 DEIDAVGTKRYDSNSGG-EREIQRTMLELLNQLDG 176 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~-~~~~~~~l~~ll~~ld~ 176 (317)
|-+..+..+.-..+... ...+...+..++..+..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 99988765542211110 12233445556666554
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0041 Score=55.60 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHHHHhhCCceEeeccc
Q psy7780 128 LFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEi 145 (317)
.+.+|-...|.|+++||=
T Consensus 140 aiARAL~~~P~lLLlDEP 157 (248)
T COG1116 140 AIARALATRPKLLLLDEP 157 (248)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 344555677999999994
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0061 Score=53.72 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=23.9
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
...+.+|+||-+..+....... .+...+..+.+.+++..|..+.
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999887543111 1111223344555555555443
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.016 Score=54.48 Aligned_cols=102 Identities=34% Similarity=0.447 Sum_probs=62.5
Q ss_pred hHHHhhhcCCCchh-hhhhcC-----CceEEEEechhhhhh-----hcCCch--HHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL-AVANQT-----SATFLRVVGSELIQK-----YLGDGP--KLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-aiA~~~-----~~~~~~v~~s~l~~~-----~~g~~~--~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
|.|++|-.||||-+ |-|-++ ..+|+-++|..+-.. .+|..+ .--.-+|+.|... -+|+|||..+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc
Confidence 89999999999999 333222 579999999765432 222222 2334577777654 7999999766
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ..++.-+..||+ ||.-.+..... .+ .-+|.||+||..
T Consensus 306 S-----------p~lQaKLLRFL~--DGtFRRVGee~--Ev---------~vdVRVIcatq~ 343 (511)
T COG3283 306 S-----------PRLQAKLLRFLN--DGTFRRVGEDH--EV---------HVDVRVICATQV 343 (511)
T ss_pred C-----------HHHHHHHHHHhc--CCceeecCCcc--eE---------EEEEEEEecccc
Confidence 3 345666666765 33222111100 00 036889999965
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.013 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhCCceEeecccc
Q psy7780 123 KLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 123 ~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+.++++++.+....|.++++||.-
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~ 115 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIF 115 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEeccc
Confidence 456777777665578999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.006 Score=49.53 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
+++.|+||+|||+ .++..++ ...++.-.+.....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcc
Confidence 4678999999999 7788888 445666566554433
|
... |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0042 Score=59.31 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=57.1
Q ss_pred echhhHHHhhhcCCCchh---hhhhc----CC-ceEEEEechh-------hhh---hhcC------CchHHHHHHHHHHH
Q psy7780 78 RVVGSELIQKYLGDGPKL---AVANQ----TS-ATFLRVVGSE-------LIQ---KYLG------DGPKLVRELFRVAE 133 (317)
Q Consensus 78 ~i~g~~Ll~G~pGtGKT~---aiA~~----~~-~~~~~v~~s~-------l~~---~~~g------~~~~~l~~~f~~a~ 133 (317)
+-++.++|.||+|+|||| .+|.. .| ..+..+..-. -+. +..| .....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 335578899999999999 44432 23 2332332211 111 1111 1122333333322
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~ 213 (317)
....+|+||....... ...+.+.+..+.+..... ..++|+.+|+..+.
T Consensus 214 -~~~DlVLIDTaG~~~~-------------d~~l~e~La~L~~~~~~~------------------~~lLVLsAts~~~~ 261 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQR-------------DRTVSDQIAMLHGADTPV------------------QRLLLLNATSHGDT 261 (374)
T ss_pred -cCCCEEEEcCCCCCcc-------------cHHHHHHHHHHhccCCCC------------------eEEEEecCccChHH
Confidence 3347999998753211 123445555554433210 45788888888888
Q ss_pred CCcccc
Q psy7780 214 LDPALI 219 (317)
Q Consensus 214 Ld~al~ 219 (317)
+...+.
T Consensus 262 l~evi~ 267 (374)
T PRK14722 262 LNEVVQ 267 (374)
T ss_pred HHHHHH
Confidence 876654
|
|
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0021 Score=54.56 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=32.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 131 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~ 131 (317)
+.|.|++|+|||| ++|+.++.+|+..+ .++.+..| ..+.++|+.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g---~sI~eIF~~ 51 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG---MSIAEIFEE 51 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC---cCHHHHHHH
Confidence 4578999999999 99999999999875 34554444 345555653
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.021 Score=51.62 Aligned_cols=70 Identities=13% Similarity=0.292 Sum_probs=39.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----e-EEEEec------hhhhhhh--------cCCch-H---HHHHHHHHHH-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----T-FLRVVG------SELIQKY--------LGDGP-K---LVRELFRVAE- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----~-~~~v~~------s~l~~~~--------~g~~~-~---~l~~~f~~a~- 133 (317)
-.++.|++|||||+ .+++.... . |+.+.. .++.... .++.. . ....+.+.|.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999 77766643 2 334222 1222221 22221 1 2224444443
Q ss_pred ---hhCCceEeeccccccccc
Q psy7780 134 ---EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 134 ---~~~P~Ii~iDEiD~l~~~ 151 (317)
...+.++|+||+..+...
T Consensus 98 ~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhh
Confidence 234679999999998643
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0047 Score=53.69 Aligned_cols=67 Identities=12% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHhhhcCCCchh---h---hhhcCCceEEEEechhhh----hhhcCCchHHHHHHHHHHHh---------hCCceEeec
Q psy7780 83 ELIQKYLGDGPKL---A---VANQTSATFLRVVGSELI----QKYLGDGPKLVRELFRVAEE---------HAPSIVFID 143 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---a---iA~~~~~~~~~v~~s~l~----~~~~g~~~~~l~~~f~~a~~---------~~P~Ii~iD 143 (317)
.++.|+||||||+ . ...+.+..++.+..+.-. ....|.....|..++..... ....+|++|
T Consensus 21 ~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVD 100 (196)
T PF13604_consen 21 SVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVD 100 (196)
T ss_dssp EEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEES
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEEe
Confidence 4578999999999 2 233346777777665321 22223333444444332211 224799999
Q ss_pred cccccc
Q psy7780 144 EIDAVG 149 (317)
Q Consensus 144 EiD~l~ 149 (317)
|+--+.
T Consensus 101 Easmv~ 106 (196)
T PF13604_consen 101 EASMVD 106 (196)
T ss_dssp SGGG-B
T ss_pred cccccC
Confidence 987663
|
|
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.12 Score=50.10 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=62.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
.+++||-+||||+ .+.....-.+++++..++...... -......+..+.....+.||||||..+-.
T Consensus 40 ~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~--l~d~~~~~~~~~~~~~~yifLDEIq~v~~--------- 108 (398)
T COG1373 40 ILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE--LLDLLRAYIELKEREKSYIFLDEIQNVPD--------- 108 (398)
T ss_pred EEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh--HHHHHHHHHHhhccCCceEEEecccCchh---------
Confidence 6799999999999 444444333666665554432211 11222222222222347999999987621
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
-.+.+..+.+. .. .+|++.+++...-....+-.=|||. ..+.+.+.+..+..
T Consensus 109 ---W~~~lk~l~d~---~~---------------------~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl 160 (398)
T COG1373 109 ---WERALKYLYDR---GN---------------------LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFL 160 (398)
T ss_pred ---HHHHHHHHHcc---cc---------------------ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHH
Confidence 23444444432 10 1233333333222233333446796 47777777888875
Q ss_pred H
Q psy7780 240 R 240 (317)
Q Consensus 240 ~ 240 (317)
.
T Consensus 161 ~ 161 (398)
T COG1373 161 K 161 (398)
T ss_pred h
Confidence 4
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.004 Score=59.83 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.0
Q ss_pred EEEEcCCCCCCCccccCCCccee
Q psy7780 204 VIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
+|.+|-.+..||..++. +++.
T Consensus 138 IiliTQ~~~~Id~~iR~--lvE~ 158 (399)
T PHA00350 138 IILLTPNIRKIHSDIRA--MIEM 158 (399)
T ss_pred EEEEeCCHHHhhHHHHH--hhhh
Confidence 88889889999988876 6654
|
|
| >KOG3928|consensus | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.051 Score=51.95 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=35.4
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC----cCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA----EDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~----~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
.|+++.++.++-..++..|+++.-+. .+..+.++--.+ +.+|+.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 48888999999999999887653222 233455554444 678988888875
|
|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0071 Score=50.68 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=26.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
+++.|+||||||+ ++|+.++.+|+.. ..+.....|
T Consensus 7 i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~~g 44 (175)
T PRK00131 7 IVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEARAG 44 (175)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 5689999999999 8999999988864 344444444
|
|
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0099 Score=61.68 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=41.3
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEechhhhh----hh------------cCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQ----KY------------LGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~----~~------------~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++|+||||||+ +-+...|-..++++..+-+. .. ....+..+..+-...++..+.+
T Consensus 62 iteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~L 141 (790)
T PRK09519 62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141 (790)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeE
Confidence 46789999999999 22224455666665443111 00 1111333333333345567899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||-+.++.+.
T Consensus 142 VVIDSI~aL~~r 153 (790)
T PRK09519 142 VVIDSVAALVPR 153 (790)
T ss_pred EEEcchhhhcch
Confidence 999999999863
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.027 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhCCceEeecccccc
Q psy7780 123 KLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 123 ~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
..+..+-+.++...|.+++||-+..+
T Consensus 102 ~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 102 ELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp HHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 34455555667778899999999999
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0093 Score=52.00 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=57.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
.+|.|.-|+|||+ .++.+ ++.-+... ... ...+. ....+ -|+.+||++.+..+.
T Consensus 55 lvl~G~QG~GKStf~~~L~~~----~~~d~~~~-----~~~-kd~~~----~l~~~--~iveldEl~~~~k~~------- 111 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPE----YFSDSIND-----FDD-KDFLE----QLQGK--WIVELDELDGLSKKD------- 111 (198)
T ss_pred eeEecCCcccHHHHHHHHhHH----hccCcccc-----CCC-cHHHH----HHHHh--HheeHHHHhhcchhh-------
Confidence 6789999999999 66544 22111111 011 11111 12222 489999999875221
Q ss_pred hhHHHHHHHHHHHH-hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC-CccccCCCcceeEEEeCC
Q psy7780 160 EREIQRTMLELLNQ-LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL-DPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 160 ~~~~~~~l~~ll~~-ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L-d~al~rpgRf~~~I~~~~ 232 (317)
...+..++.. .+.+... +.-.....|...++|+|||..+-| |+.=-| || ..|.++.
T Consensus 112 ----~~~lK~~iT~~~~~~R~p----------Y~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 112 ----VEALKSFITRRTDTYRPP----------YGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ----HHHHHHHhcccceeeecC----------CcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1233334332 1111110 111223345678899999998865 445667 87 3555554
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0042 Score=58.82 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=42.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC----ceEEEEe-chhhh---------hhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS----ATFLRVV-GSELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~----~~~~~v~-~s~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|-+++.||+|+|||| ++.+++. ..++.+. ..++. ...+|.......+.+..+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 567899999999999 5555443 3344432 11221 11234333346667777888899999999
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.046 Score=55.90 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=69.9
Q ss_pred CCCCeEEEEEcCCC--CCCCccccCCCcce---eEEEeCC--C-CHHHHHHHHHHHhcCCCC---CcCCC---HHHHHHh
Q psy7780 198 LPGDVKVIMATNRI--ETLDPALIRPGRID---RKIEFPL--P-DEKTKRRIFNIHTSRMTL---AEDVN---LQELIMA 263 (317)
Q Consensus 198 ~~~~v~vI~tTN~~--~~Ld~al~rpgRf~---~~I~~~~--P-~~~~r~~Il~~~l~~~~~---~~~~~---~~~ia~~ 263 (317)
.|.++.||+++|+. ..+||+|+. ||. ..++|.. + +.+.+..+++...+.... ....+ +..+.+.
T Consensus 274 ip~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~ 351 (637)
T PRK13765 274 VPCDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIRE 351 (637)
T ss_pred eeeeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Confidence 44678999999984 567999998 986 6676663 2 456677777644432211 11222 2333322
Q ss_pred ---CCC------CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 264 ---KDD------LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 264 ---t~g------~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
..| +..++|..++++|...|..+++..++.+|+.+|+.+
T Consensus 352 ~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 352 AKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 111 447899999999999999999999999999888753
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0084 Score=53.19 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=24.5
Q ss_pred HHhh-CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 132 AEEH-APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 132 a~~~-~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
..+. .+.+|+||-+..+....... .+...+..+.+.+++..+..+.
T Consensus 110 l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la 156 (235)
T cd01123 110 LIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLA 156 (235)
T ss_pred HhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHH
Confidence 3445 78999999999886421111 1111223344555555554443
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.018 Score=52.28 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.4
Q ss_pred HHhhCCceEeeccccccccc
Q psy7780 132 AEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 132 a~~~~P~Ii~iDEiD~l~~~ 151 (317)
++.+.|.+|+||.+..+...
T Consensus 136 ~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 136 AVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HhcCCceEEEECCHHHHhcc
Confidence 34567899999999988644
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.037 Score=46.82 Aligned_cols=12 Identities=25% Similarity=0.047 Sum_probs=11.0
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
++.|+||+|||+
T Consensus 4 ~ltG~~G~GKTT 15 (174)
T PRK13695 4 GITGPPGVGKTT 15 (174)
T ss_pred EEECCCCCCHHH
Confidence 578999999999
|
|
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.055 Score=46.74 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHhhhcCCCchh---hhhhcC--CceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT--SATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~--~~~~~ 106 (317)
+.++|+||||||+ .+++.+ +..++
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3578999999999 788888 55554
|
|
| >PHA00012 I assembly protein | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.014 Score=54.41 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=37.6
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
-+++++||+...++.|....... ....+++...-. .++-+|.+|..+..+|.
T Consensus 82 gsLlVlDEaq~~fp~R~~~sk~p-----~~vie~l~~hRh-----------------------~G~DvilITQ~ps~VDs 133 (361)
T PHA00012 82 NGLLVLDECGTWFNSRSWNDKER-----QPVIDWFLHARK-----------------------LGWDIIFIIQDISIMDK 133 (361)
T ss_pred CcEEEEECcccccCCCCcCcCCc-----HHHHHHHHHhcc-----------------------CCceEEEEcCCHHHHhH
Confidence 47999999999999985433221 223344444322 34558999999999998
Q ss_pred ccc
Q psy7780 217 ALI 219 (317)
Q Consensus 217 al~ 219 (317)
.++
T Consensus 134 ~IR 136 (361)
T PHA00012 134 QAR 136 (361)
T ss_pred HHH
Confidence 875
|
|
| >KOG2383|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0082 Score=57.07 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCeEEEEEcCC-CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCC-C--CCHH-HHHH
Q psy7780 200 GDVKVIMATNR-IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD-D--LSGA-DIKA 274 (317)
Q Consensus 200 ~~v~vI~tTN~-~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~-g--~s~~-dl~~ 274 (317)
..|++++|+|| |+.|-..=+. +..++|- ..+|+.++.-..+++.+|+...+...+ + |.+. |...
T Consensus 223 ~GvVlvATSNR~P~dLYknGlQ-----R~~F~Pf------I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~ 291 (467)
T KOG2383|consen 223 NGVVLVATSNRAPEDLYKNGLQ-----RENFIPF------IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVET 291 (467)
T ss_pred CCeEEEEeCCCChHHHhhcchh-----hhhhhhH------HHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHH
Confidence 67999999999 6666654433 3444443 467788887778888888883333221 1 3333 7777
Q ss_pred HHHHHH
Q psy7780 275 ICTEAG 280 (317)
Q Consensus 275 l~~~A~ 280 (317)
++++--
T Consensus 292 ~l~~~f 297 (467)
T KOG2383|consen 292 VLKEWF 297 (467)
T ss_pred HHHHHH
Confidence 776543
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.02 Score=50.93 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=19.3
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEe
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVV 109 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~ 109 (317)
..++.|+||+|||+ ..|...+.++++++
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 36789999999998 22333366666665
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.015 Score=49.41 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh-----------------cCCchHHHHHHHHHHHhhCCceEee
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY-----------------LGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~-----------------~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
+++.|+||+|||+ .++.+.+.+++++......+.. .-|.+..+..+++.. ...+.+|+|
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~VlI 82 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVLV 82 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEEe
Confidence 4688999999999 7777777777777654432210 001122344444321 123568999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 176 (317)
|-+..+..+.-..+. .......+.+++..+..
T Consensus 83 D~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 83 DCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ 114 (170)
T ss_pred hhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc
Confidence 999888654321111 12233445556666554
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0041 Score=53.36 Aligned_cols=33 Identities=3% Similarity=0.059 Sum_probs=25.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||| .+|+..|+.+ ++..+++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~~ 38 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRAA 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHHH
Confidence 4678999999999 8899888655 5566666654
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.038 Score=49.56 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.+++.|+||+|||+
T Consensus 66 l~LIaG~PG~GKT~ 79 (237)
T PRK05973 66 LVLLGARPGHGKTL 79 (237)
T ss_pred EEEEEeCCCCCHHH
Confidence 57899999999998
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.062 Score=51.73 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=29.4
Q ss_pred EEEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEecc
Q psy7780 3 VGTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLNHK 49 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 49 (317)
+.-+.|+++++.....+. +++.-+.--.+.+.+..|+.||+|.-.-+
T Consensus 51 ~~g~le~~~~g~gflr~~~~~~~~~~~d~yvs~~~i~~~~lr~gd~v~g~~R 102 (415)
T TIGR00767 51 GEGVLEILPDGFGFLRSPDSSYLPGPDDIYVSPSQIRRFNLRTGDTIEGQIR 102 (415)
T ss_pred EEEEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEe
Confidence 345677887777666542 23332222356677889999999975433
|
Members of this family differ in the specificity of RNA binding. |
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0051 Score=52.47 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||+ .+|+.++++|+.++
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4678999999999 99999999998775
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.001 Score=66.61 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=67.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
++|+||||||||+ ++++.++-..+.++++.=.. -|...-...--+++||++-.-+-...+-.+|.
T Consensus 434 il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~ 501 (647)
T PHA02624 434 WLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGCAIDQFMVVFEDVKGQPADNKDLPSGQ 501 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhhhhhceEEEeeeccccccccccCCccc
Confidence 6899999999999 99999965666687543111 12221111114889998864433211111111
Q ss_pred hhHHHHHHHHHHHHhcCC-CcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q psy7780 160 EREIQRTMLELLNQLDGF-DSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~-~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
. -.-+..+-+.+||- .-+...+.-. . ... .---+|.|||. ..||..+.- ||..++.|..
T Consensus 502 ~---~dNl~~lRn~LDG~V~v~ld~KH~n--~---~q~---~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 502 G---MNNLDNLRDYLDGSVPVNLEKKHLN--K---RSQ---IFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred c---cchhhHHHhhcCCCCccccchhccC--c---hhc---cCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 1 01123455666775 2111111000 0 000 00126777774 678999998 9999998854
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.022 Score=47.85 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.|++|+|||+
T Consensus 26 ~~~i~~~~GsGKT~ 39 (201)
T smart00487 26 DVILAAPTGSGKTL 39 (201)
T ss_pred cEEEECCCCCchhH
Confidence 56789999999998
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0037 Score=53.24 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||+ .+|+.+++ ..++.++++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHHH
Confidence 3578999999999 88998875 566666766544
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.003 Score=53.87 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||| .+|+.++++|+.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4578999999999 99999999887754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.061 Score=57.12 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=52.0
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L 214 (317)
..|.+|+|||++.+-.. .+...+..++..+. .++.+|.++...-.+
T Consensus 120 ~~~~~lvlDD~h~~~~~----------~~~~~l~~l~~~~~------------------------~~~~lv~~sR~~~~~ 165 (903)
T PRK04841 120 HQPLYLVIDDYHLITNP----------EIHEAMRFFLRHQP------------------------ENLTLVVLSRNLPPL 165 (903)
T ss_pred CCCEEEEEeCcCcCCCh----------HHHHHHHHHHHhCC------------------------CCeEEEEEeCCCCCC
Confidence 56899999999987311 23345555554421 445555566442122
Q ss_pred Cc-cccCCCcceeEEEeC--CCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCC
Q psy7780 215 DP-ALIRPGRIDRKIEFP--LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 268 (317)
Q Consensus 215 d~-al~rpgRf~~~I~~~--~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s 268 (317)
+- .+..-|.+ ..|... ..+.++-.+++...+.. .+ +..+...+.+.|+|..
T Consensus 166 ~~~~l~~~~~~-~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 166 GIANLRVRDQL-LEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWA 219 (903)
T ss_pred chHhHHhcCcc-eecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChH
Confidence 21 11111121 123333 56888888888766542 22 2334677888888853
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0076 Score=57.62 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=43.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcC-----CceEEEEech-hhh-----------hhhcCCchHHHHHHHHHHHhhCCceE
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT-----SATFLRVVGS-ELI-----------QKYLGDGPKLVRELFRVAEEHAPSIV 140 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s-~l~-----------~~~~g~~~~~l~~~f~~a~~~~P~Ii 140 (317)
|.+|+.||+|+|||| +++++. +...+.+.-+ ++. +..+|............|.++.|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 467899999999999 655544 2345555322 221 12233333345667777888899999
Q ss_pred eecccc
Q psy7780 141 FIDEID 146 (317)
Q Consensus 141 ~iDEiD 146 (317)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999985
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.019 Score=48.65 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=36.6
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L 214 (317)
..|.|+++||+-+-+.. .....+..++..+..+ .+|.+++.|..++.
T Consensus 150 ~~P~ILLLDE~TsALD~------~nkr~ie~mi~~~v~~--------------------------q~vAv~WiTHd~dq- 196 (223)
T COG4619 150 FMPKILLLDEITSALDE------SNKRNIEEMIHRYVRE--------------------------QNVAVLWITHDKDQ- 196 (223)
T ss_pred cCCceEEecCchhhcCh------hhHHHHHHHHHHHhhh--------------------------hceEEEEEecChHH-
Confidence 44899999998765432 1223344444444432 67889999987653
Q ss_pred CccccCCCcceeEEEeCC
Q psy7780 215 DPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 215 d~al~rpgRf~~~I~~~~ 232 (317)
++ | -++++|.+-+
T Consensus 197 --a~-r--ha~k~itl~~ 209 (223)
T COG4619 197 --AI-R--HADKVITLQP 209 (223)
T ss_pred --Hh-h--hhheEEEecc
Confidence 22 3 5667777654
|
|
| >PRK12339 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.07 Score=46.48 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=23.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+++.|+||+|||+ .+|.+++..+ +..++++
T Consensus 6 i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~ 38 (197)
T PRK12339 6 HFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYL 38 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHH
Confidence 4688999999999 7999988755 4555543
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.046 Score=53.39 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=30.5
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 255 VNLQELIMAKDDLSGADIKAICTEAGLM---------ALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 255 ~~~~~ia~~t~g~s~~dl~~l~~~A~~~---------a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.+.+.++.+.-| -+|+..|++.|... +-+-.....+.+||.+-++.+.+
T Consensus 277 f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 277 FDPDRFISRLLG--MGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred CCHHHHHHHHhC--CCChHHHHHHHHHhhhHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 345666766544 35777777755432 11112457899999998888764
|
|
| >KOG2543|consensus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.055 Score=51.29 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=26.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+||..|||||. ++-++++.+.+.++|-+.
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 3689999999999 888888999999888654
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.013 Score=49.04 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=25.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||| .+++.++..++.++.-.+..
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 4578999999999 88888865666666655554
|
|
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0052 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=21.2
Q ss_pred HhhhcCCCchh---hhhhcCCceEEE
Q psy7780 85 IQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.||||||||| -+|+++|.++++
T Consensus 5 IsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 5 ISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred eccCCCCChhHHHHHHHHHhCCceee
Confidence 57999999999 999999999876
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.042 Score=51.36 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=24.7
Q ss_pred HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 133 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
.+..+.+|+||-+-+++...... .+.-.+.++.+.+++..|..+.
T Consensus 188 ~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la 232 (313)
T TIGR02238 188 SEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKIS 232 (313)
T ss_pred hccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHH
Confidence 34568899999999887543211 1122222334555555544443
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.018 Score=54.71 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
.++.|.||||||. .+|.++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh
Confidence 3678999999999 566655
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.022 Score=50.64 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=39.8
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechh----hhh----------hhcC-------------------Cch
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSE----LIQ----------KYLG-------------------DGP 122 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~----l~~----------~~~g-------------------~~~ 122 (317)
..+++|+||+|||+ +++. ..+...++++..+ +.. ++.. ...
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 106 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLAN 106 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcchHH
Confidence 46789999999998 3322 2355666665422 111 1100 012
Q ss_pred HHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 123 KLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 123 ~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
..+..+-+...+..|.+++||++-.+.
T Consensus 107 ~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 107 KLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 233444444555678999999999774
|
|
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.0082 Score=49.37 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=27.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
+++.|+||+|||+ .+|+.++++++..+ .+.....|.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~~ 40 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAGM 40 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcCC
Confidence 4688999999999 89999999888654 555444443
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.023 Score=50.45 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHhhhcCCCchh-------hhhhc----CCceEEEEech-hhhhhhcC-------------CchHHHHHHHHHHHhhCC
Q psy7780 83 ELIQKYLGDGPKL-------AVANQ----TSATFLRVVGS-ELIQKYLG-------------DGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-------aiA~~----~~~~~~~v~~s-~l~~~~~g-------------~~~~~l~~~f~~a~~~~P 137 (317)
.|+-||||||||| .++.. +...+..++-+ ++..-..| .....-.-+....+.++|
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~P 219 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSP 219 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcCC
Confidence 4678999999999 33333 33444555433 33221111 111222234455688999
Q ss_pred ceEeeccccc
Q psy7780 138 SIVFIDEIDA 147 (317)
Q Consensus 138 ~Ii~iDEiD~ 147 (317)
-||++|||..
T Consensus 220 EViIvDEIGt 229 (308)
T COG3854 220 EVIIVDEIGT 229 (308)
T ss_pred cEEEEecccc
Confidence 9999999853
|
|
| >KOG3347|consensus | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.0046 Score=51.07 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+|+.|-||||||+ .+|..++..++.++
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 5789999999999 99999998877653
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.042 Score=49.92 Aligned_cols=14 Identities=21% Similarity=0.078 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||||||+
T Consensus 38 ~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 38 VINITGVSDTGKSL 51 (259)
T ss_pred EEEEEcCCCCCHHH
Confidence 56899999999998
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.011 Score=46.55 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.6
Q ss_pred CCceEeeccccccccc
Q psy7780 136 APSIVFIDEIDAVGTK 151 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~ 151 (317)
...+|+|||++.+...
T Consensus 103 ~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 103 KLDLLILDEAHRLLNQ 118 (144)
T ss_pred cCCEEEEeCHHHHhhc
Confidence 4679999999988543
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.028 Score=47.17 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=45.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechhh--------hhhhcCC-----chHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSEL--------IQKYLGD-----GPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l--------~~~~~g~-----~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
...+.|++|+|||+ .++..... --+.+++.++ ....++. +...-+-.+..|-...|.++++|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlD 107 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILD 107 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 35688999999999 66655421 1122322211 1111111 11233445666677789999999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHh
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 174 (317)
|--.-. +.+..+.+.+++.++
T Consensus 108 EP~~~L----------D~~~~~~l~~~l~~~ 128 (163)
T cd03216 108 EPTAAL----------TPAEVERLFKVIRRL 128 (163)
T ss_pred CCCcCC----------CHHHHHHHHHHHHHH
Confidence 964322 233445566666654
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.032 Score=52.37 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=12.2
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
+.-++|+=|+|||+
T Consensus 67 GlYl~GgVGrGKT~ 80 (367)
T COG1485 67 GLYLWGGVGRGKTM 80 (367)
T ss_pred eEEEECCCCccHHH
Confidence 45689999999998
|
|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.0052 Score=51.72 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=27.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
+++.|+||||||+ .+|+.++.+|+..+ .++....|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~ 42 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGM 42 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCC
Confidence 4678999999999 99999999997754 344443443
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.087 Score=47.06 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCceEeecccccc
Q psy7780 124 LVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 124 ~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
.+..+.+.+....|.+|+||.+-.+
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHh
Confidence 4455555565667999999988777
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.068 Score=47.78 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=19.1
Q ss_pred hHHHhhhcCCCchh----hhhh--cCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL----AVAN--QTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~--~~~~~~~~v~~ 110 (317)
..|++|+||+|||+ .+++ ..|-+.++++.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 47899999999998 1222 23555555543
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.048 Score=51.04 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=54.9
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhhhh----------------hcCCchHHHHHHHHHHHhhCCceE
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQK----------------YLGDGPKLVRELFRVAEEHAPSIV 140 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~~----------------~~g~~~~~l~~~f~~a~~~~P~Ii 140 (317)
.-++||+|+|||+ +-++..+.....+++..-++. .....+..+..+-...+....++|
T Consensus 56 vEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lV 135 (322)
T PF00154_consen 56 VEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLV 135 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEE
T ss_pred EEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEE
Confidence 4578999999998 334456777888877432221 122234444433334455556799
Q ss_pred eecccccccccccCCC---CCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 141 FIDEIDAVGTKRYDSN---SGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 141 ~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
++|=+.++.++..-.+ +.......+.+++++..+...-+.
T Consensus 136 VvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~ 178 (322)
T PF00154_consen 136 VVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSK 178 (322)
T ss_dssp EEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHh
Confidence 9999999987653221 111223456778888877765544
|
In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A .... |
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.54 Score=45.54 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=30.9
Q ss_pred EEEEcCCCC---CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 204 VIMATNRIE---TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 204 vI~tTN~~~---~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
||+.|+... .|..||=. |.-+.|.+.-.+.+.-+..+..++..
T Consensus 186 VIFlT~dv~~~k~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKALPN--RVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEEECCCCchhhhHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhcc
Confidence 555565443 36667754 76679999999988888888887754
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.028 Score=56.32 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceE-EEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATF-LRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~-~~v~~ 110 (317)
.+|+||||||||+ ++++.++-.. ..++.
T Consensus 437 iv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 437 LVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 5799999999999 8888875333 33553
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.068 Score=47.07 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=12.1
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 32 ~~itGpNg~GKSt 44 (213)
T cd03281 32 MVITGPNSSGKSV 44 (213)
T ss_pred EEEECCCCCChHH
Confidence 6799999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.075 Score=45.41 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=17.4
Q ss_pred HHHHHHHHHHh-hCCceEeeccccccccc
Q psy7780 124 LVRELFRVAEE-HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 124 ~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~ 151 (317)
.++.+.+.+.+ ..|.+|+||-+..+...
T Consensus 128 ~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 128 DLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 45566777777 67999999999999865
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.026 Score=62.27 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=85.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh--hhhcC----CchHH---HHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI--QKYLG----DGPKL---VRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~--~~~~g----~~~~~---l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
|+|+.||..+|||+ .+|.++|-.|++|+-.+-. +.|+| ..... -.-+.-.|-+.. --|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 99999999999999 9999999999999865432 22333 21110 011222333332 47889998643
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc-ccCC-CCeEEEEEcCCCCC------CCccccCC
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL-IYLP-GDVKVIMATNRIET------LDPALIRP 221 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~vI~tTN~~~~------Ld~al~rp 221 (317)
++ .+..+|+.+|+--..+ ++-.+- ...| .++.+++|.|.|-. |..|++.
T Consensus 968 pT----------DVLEaLNRLLDDNRel------------fIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN- 1024 (4600)
T COG5271 968 PT----------DVLEALNRLLDDNREL------------FIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN- 1024 (4600)
T ss_pred cH----------HHHHHHHHhhccccce------------ecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh-
Confidence 22 3555666665421111 111110 2223 34667777787654 7889999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
|| ..++|.--.+++...||+...
T Consensus 1025 -RF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1025 -RF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred -hh-HhhhcccCcHHHHHHHHhccC
Confidence 99 478888777888888887554
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.0067 Score=52.01 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||| .+|+.+|++++ ++++++.+
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr~ 39 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLRS 39 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHHH
Confidence 4688999999999 88999887654 45555543
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.045 Score=51.83 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCC
Q psy7780 132 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF 177 (317)
Q Consensus 132 a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 177 (317)
..+..+.+|+||-+-+++...... .+.-.+.++.+.+++..|..+
T Consensus 217 i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~l 261 (344)
T PLN03187 217 MAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKI 261 (344)
T ss_pred HHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHH
Confidence 344568999999999887643221 122223344455555555443
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.0092 Score=59.63 Aligned_cols=171 Identities=17% Similarity=0.217 Sum_probs=92.8
Q ss_pred hHHHhhhcCCCchh---hhhh--cCCceEEEEechhhhh-----hhcCCchHHHHHHHHHHHhh-----CCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVAN--QTSATFLRVVGSELIQ-----KYLGDGPKLVRELFRVAEEH-----APSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~--~~~~~~~~v~~s~l~~-----~~~g~~~~~l~~~f~~a~~~-----~P~Ii~iDEiD 146 (317)
|+++.|-|||||-. ++-+ +..-+|+-|+|..+-+ .++|..+...--.+.+-.+. .--.+|+|||.
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhh
Confidence 89999999999987 4333 3445899999976433 23333322211111111111 12489999998
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRI 224 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf 224 (317)
.+. -..|..|...|.+=. .+.+. . -+-+|-||+||++.= ..+.+-|||
T Consensus 418 d~p-----------~~~Qs~LLrVl~e~~v~p~g~~--------------~--~~vdirvi~ath~dl---~~lv~~g~f 467 (606)
T COG3284 418 DMP-----------LALQSRLLRVLQEGVVTPLGGT--------------R--IKVDIRVIAATHRDL---AQLVEQGRF 467 (606)
T ss_pred hch-----------HHHHHHHHHHHhhCceeccCCc--------------c--eeEEEEEEeccCcCH---HHHHHcCCc
Confidence 763 234555666665411 11111 0 124688999998732 244556666
Q ss_pred e---------eEEEeCCC-CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh----CCCCCHHHHHHHHHHHHHHH
Q psy7780 225 D---------RKIEFPLP-DEKTKRRIFNIHTSRMTLA-EDVNLQELIMA----KDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 225 ~---------~~I~~~~P-~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~----t~g~s~~dl~~l~~~A~~~a 283 (317)
. ..|++|+. .+.++...+..++.+.... -..+-+.++.. =.| +-+++.++++.++..+
T Consensus 468 redLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 468 REDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred hHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC
Confidence 4 45666655 4455666666555443221 12222223222 234 5678888888776544
|
|
| >PRK13946 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.019 Score=49.25 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
.+++.|+||||||+ .+|+.+|++|+..+.
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 35788999999999 999999999988763
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.077 Score=46.16 Aligned_cols=13 Identities=15% Similarity=0.013 Sum_probs=11.6
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
++|.||+|+||||
T Consensus 4 i~lvGptGvGKTT 16 (196)
T PF00448_consen 4 IALVGPTGVGKTT 16 (196)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCchHh
Confidence 4688999999999
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.031 Score=51.46 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=43.9
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEec---------hh-hhhhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVG---------SE-LIQKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~---------s~-l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|-+|..||.|+|||| ++-.+. ..+.+.+.- .. +.+..+|.--.........|.+..|.|||+-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvG 205 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVG 205 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEe
Confidence 467899999999999 333333 345555522 22 2234567666666666777777889999998
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 206 EmR 208 (353)
T COG2805 206 EMR 208 (353)
T ss_pred ccc
Confidence 874
|
|
| >KOG2680|consensus | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.0099 Score=54.61 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=40.6
Q ss_pred chh-hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 79 VVG-SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 79 i~g-~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
|+| .+|+.|+||||||. .+|+.+| .||..++++++.+.....++. +-+.|..+
T Consensus 64 iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEA-ltQAfRks 122 (454)
T KOG2680|consen 64 IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEA-LTQAFRKS 122 (454)
T ss_pred ccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHH-HHHHHHHh
Confidence 444 67899999999998 7888887 599999999998876666653 44445544
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.093 Score=44.83 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=15.9
Q ss_pred HHHHHHHHhhC--CceEeeccccc
Q psy7780 126 RELFRVAEEHA--PSIVFIDEIDA 147 (317)
Q Consensus 126 ~~~f~~a~~~~--P~Ii~iDEiD~ 147 (317)
+-.+..|-... |.++++||--.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcc
Confidence 34455666677 99999999643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.07 Score=49.89 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||||||.
T Consensus 104 vtei~G~~GsGKT~ 117 (317)
T PRK04301 104 ITEFYGEFGSGKTQ 117 (317)
T ss_pred EEEEECCCCCCHhH
Confidence 56799999999998
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.015 Score=52.97 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=41.0
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCC---ceEEEEec-hhhhhh------h-cCCchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTS---ATFLRVVG-SELIQK------Y-LGDGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~-s~l~~~------~-~g~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
+|.+++.|++|+|||+ ++..++. ..++.+.- .++.-. + .........+++..+.+..|.+|++.|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 3467899999999999 5555553 34444432 222111 0 0123446778888888999999999998
Q ss_pred c
Q psy7780 146 D 146 (317)
Q Consensus 146 D 146 (317)
-
T Consensus 207 R 207 (270)
T PF00437_consen 207 R 207 (270)
T ss_dssp -
T ss_pred C
Confidence 5
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >KOG0477|consensus | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.053 Score=54.35 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.|-+-|..+++.+...|-..-+..|+.+|+..|+.-++..
T Consensus 721 iTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 721 ITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 3567777777766656655557789999999998877643
|
|
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.01 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+++.|+||+|||+ .++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 4678999999999 778888876654
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.074 Score=49.46 Aligned_cols=14 Identities=14% Similarity=0.136 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||+|||+
T Consensus 97 i~ei~G~~g~GKT~ 110 (310)
T TIGR02236 97 ITEVFGEFGSGKTQ 110 (310)
T ss_pred EEEEECCCCCCHHH
Confidence 45799999999998
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.024 Score=51.02 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=22.8
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
++|.|+||+|||+ ++|..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 4688999999999 677765 456677665444
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.091 Score=46.65 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.++.||.|+|||+
T Consensus 33 ~~~itG~N~~GKSt 46 (222)
T cd03287 33 CQIITGPNMGGKSS 46 (222)
T ss_pred EEEEECCCCCCHHH
Confidence 35789999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.013 Score=42.99 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=10.4
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
++.||||||||+
T Consensus 14 vv~g~pGtGKT~ 25 (76)
T PF13245_consen 14 VVQGPPGTGKTT 25 (76)
T ss_pred EEECCCCCCHHH
Confidence 358999999996
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.11 Score=49.03 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=24.5
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF 177 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 177 (317)
...+.+|+||=+-+++..... +.+...+.++.+.+++..|..+
T Consensus 211 ~~~~~lvVIDSital~r~~~~-~~~~~~~r~~~l~~~~~~L~~l 253 (337)
T PTZ00035 211 EERFALLIVDSATALFRVDYS-GRGELAERQQHLGKFLRALQKL 253 (337)
T ss_pred ccCccEEEEECcHHhhhhhcc-CcccHHHHHHHHHHHHHHHHHH
Confidence 456789999999998754221 1112223344455666555544
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.015 Score=50.67 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=10.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||||||||+
T Consensus 20 ~~i~GpPGTGKT~ 32 (236)
T PF13086_consen 20 TLIQGPPGTGKTT 32 (236)
T ss_dssp EEEE-STTSSHHH
T ss_pred EEEECCCCCChHH
Confidence 5689999999997
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.01 Score=50.88 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=24.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||+ .+|+.+++.+ ++..+++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~~ 37 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLREE 37 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHHH
Confidence 3678999999999 8888887665 5555665543
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.018 Score=49.57 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=28.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
.+++.|++|+|||+ .+|+.++.+|+..+ .++....|.
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~ 51 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGK 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhC
Confidence 35688999999999 99999999999766 444444443
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.0095 Score=50.41 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|.||||||| .++ ++|...++++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 3578999999999 677 8888877754
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.14 Score=45.95 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
-++.+|.++.+.-.||+.++. =++..+-++ .+......|++.+.
T Consensus 127 ~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 127 YNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred cceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhcc
Confidence 357799999999999999977 677777675 46666666666553
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=94.45 E-value=0.021 Score=47.19 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=24.9
Q ss_pred hhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 86 QKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 86 ~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
.||||+|||+ .+|++.|+ .+++..+++....
T Consensus 2 ~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 5999999999 89998875 5677778776554
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.012 Score=50.37 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||| ++|+.++.+++..+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4678999999999 99999999887765
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.023 Score=52.81 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=42.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEech-hhh-------hhhcCCchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGS-ELI-------QKYLGDGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s-~l~-------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
..++.|++|+|||+ ++++.. +..++.+.-. ++. ....++......+++..+.++.|..|++.|+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGEi 213 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGEV 213 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 67899999999999 666664 2334333221 221 1111222226778888899999999999987
Q ss_pred c
Q psy7780 146 D 146 (317)
Q Consensus 146 D 146 (317)
-
T Consensus 214 R 214 (299)
T TIGR02782 214 R 214 (299)
T ss_pred C
Confidence 4
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.057 Score=46.36 Aligned_cols=13 Identities=15% Similarity=-0.021 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|.|||+
T Consensus 2 ~~ltG~N~~GKst 14 (185)
T smart00534 2 VIITGPNMGGKST 14 (185)
T ss_pred EEEECCCCCcHHH
Confidence 3688999999998
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.011 Score=48.11 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
.+.|+||||||+ .+|..++++++..+
T Consensus 3 ~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999 89999999988876
|
|
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.048 Score=45.15 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=36.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhh---cCC----chHHHHHHHHHHHh--hCCceEeeccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKY---LGD----GPKLVRELFRVAEE--HAPSIVFIDEI 145 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~---~g~----~~~~l~~~f~~a~~--~~P~Ii~iDEi 145 (317)
+++.|+||+|||+ .++..+ +...+.++.-.+.... .+. ....++.+...++. .+..++++|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~ 79 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFI 79 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 3578999999999 777766 6666777655443311 111 12334444444443 23467777743
|
The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. |
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.2 Score=47.90 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=28.2
Q ss_pred EEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEecc
Q psy7780 4 GTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLNHK 49 (317)
Q Consensus 4 ~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 49 (317)
.-+.|+++++.....+. .++.-+.--.+.+.+..|+.|+.|.-..+
T Consensus 20 ~g~l~~~~~g~gflr~~~~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r 70 (380)
T PRK12608 20 LGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVAR 70 (380)
T ss_pred eEEEEEcCCCceEeecCccCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccC
Confidence 34677888876665542 22222222245667788999999987543
|
|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.016 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.0
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
++.||||+|||+ .+++.++..++.
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 467999999999 888998876654
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.033 Score=49.87 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=26.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||+ .+|+++|+. ++++++++.+.
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 4688999999999 789988864 67788877653
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.074 Score=46.22 Aligned_cols=14 Identities=21% Similarity=-0.062 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.++.||.|+|||+
T Consensus 31 ~~~l~G~Ng~GKSt 44 (202)
T cd03243 31 LLLITGPNMGGKST 44 (202)
T ss_pred EEEEECCCCCccHH
Confidence 46799999999999
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.079 Score=50.00 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=36.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhh-------hhhh---cC---------Cc-hHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSEL-------IQKY---LG---------DG-PKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l-------~~~~---~g---------~~-~~~l~~~f~~a~~~ 135 (317)
.++|.|+||+|||| .+|.. .+..+..+.+-.. +..| .| .. ...+.+..+.++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~ 221 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR 221 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999 34433 2444444443211 1100 11 11 12234444555555
Q ss_pred CCceEeecccccc
Q psy7780 136 APSIVFIDEIDAV 148 (317)
Q Consensus 136 ~P~Ii~iDEiD~l 148 (317)
.-.+|+||....+
T Consensus 222 ~~DvVLIDTaGr~ 234 (336)
T PRK14974 222 GIDVVLIDTAGRM 234 (336)
T ss_pred CCCEEEEECCCcc
Confidence 4579999987654
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.16 Score=44.05 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=12.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 31 ~~ltG~Ng~GKSt 43 (200)
T cd03280 31 LVITGPNAGGKTV 43 (200)
T ss_pred EEEECCCCCChHH
Confidence 6899999999999
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.21 Score=43.95 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=22.8
Q ss_pred HHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 131 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 131 ~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
.+.+..+..++||-+..+...- +...+....+..++..+.
T Consensus 102 ~i~~~~~~~vVIDsls~l~~~~-----~~~~~~r~~l~~l~~~lk 141 (224)
T TIGR03880 102 LIKELGASRVVIDPISLLETLF-----DDDAERRTELFRFYSSLR 141 (224)
T ss_pred HHHHhCCCEEEEcChHHHhhhc-----CCHHHHHHHHHHHHHHHH
Confidence 3455678899999888773211 112233344556666553
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.0084 Score=52.94 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=10.9
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
+++|+||+|||+
T Consensus 2 vv~G~pGsGKSt 13 (234)
T PF01443_consen 2 VVHGVPGSGKST 13 (234)
T ss_pred EEEcCCCCCHHH
Confidence 468999999999
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.1 Score=49.43 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 132 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 132 a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
.....+.+|+||=+-+++..... +.+...+.++.|.+++..|..+...
T Consensus 214 ~~~~~~~LIVIDSI~alfr~~~~-~~g~l~~r~~~L~~~l~~L~~lA~~ 261 (342)
T PLN03186 214 MAETRFALMIVDSATALYRTEFS-GRGELSARQMHLGKFLRSLQRLADE 261 (342)
T ss_pred hhccCCCEEEEeCcHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999998754221 1122223344566776666554433
|
|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.05 Score=47.86 Aligned_cols=66 Identities=18% Similarity=0.068 Sum_probs=37.2
Q ss_pred HHHhhhcCCCchhhhhhcCCceEEEEechhhh-h------hhcCCchHHHHHHHHHHHh--hCCceEeecccccc
Q psy7780 83 ELIQKYLGDGPKLAVANQTSATFLRVVGSELI-Q------KYLGDGPKLVRELFRVAEE--HAPSIVFIDEIDAV 148 (317)
Q Consensus 83 ~Ll~G~pGtGKT~aiA~~~~~~~~~v~~s~l~-~------~~~g~~~~~l~~~f~~a~~--~~P~Ii~iDEiD~l 148 (317)
.++||+||+|||+.++.--+.-|+.+..+... . .+.=.+-..+.+.++.+.. ..-..|+||-++.+
T Consensus 6 ~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 47899999999993333333344555444211 0 0111234456666654422 23368999988875
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.12 Score=43.18 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.|+|||+
T Consensus 23 ~~~i~G~NgsGKS~ 36 (162)
T cd03227 23 LTIITGPNGSGKST 36 (162)
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999998
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.35 Score=44.18 Aligned_cols=209 Identities=14% Similarity=0.050 Sum_probs=95.7
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHH-hhCCceEeecccccc-------
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE-EHAPSIVFIDEIDAV------- 148 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~-~~~P~Ii~iDEiD~l------- 148 (317)
+|+.|+.|.+|+||++ .+|.-+++.++.+..+.-.+ ..+-...++.++..|- +..|.+++|+|-+-.
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~ 108 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLED 108 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHH
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHH
Confidence 4678899999999999 67777788999887543111 1122456777777765 556888888764432
Q ss_pred ----cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC--eEEEEEcCCCCC-----CCcc
Q psy7780 149 ----GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD--VKVIMATNRIET-----LDPA 217 (317)
Q Consensus 149 ----~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~--v~vI~tTN~~~~-----Ld~a 217 (317)
...-.-.+-=...|...++..+-.......-... .....+-+......+ |++.+....+.. --|+
T Consensus 109 in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~----~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPa 184 (268)
T PF12780_consen 109 INSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDS----RESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPA 184 (268)
T ss_dssp HHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SS----HHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCC
T ss_pred HHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCc----hHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcc
Confidence 1111000001123444444444333221110000 001111111111133 343333322221 2467
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH--HhcCCCcCHHH
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL--RERRMKVTNED 295 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~--~~~~~~it~~d 295 (317)
|.+ ++. ...+..-..+....+-..+++.....+...-+.++.. -..+..-+.++...=. .++...+|+.-
T Consensus 185 L~~--~ct-IdW~~~W~~eaL~~Va~~~l~~~~~~~~~~~~~l~~~-----~~~iH~sv~~~s~~y~~~~~r~~yvTP~s 256 (268)
T PF12780_consen 185 LVN--CCT-IDWFDPWPEEALLSVANKFLSDIELLSEELKKSLAEI-----MVFIHQSVEEISRKYLQELRRYNYVTPKS 256 (268)
T ss_dssp HHH--HSE-EEEEES--HHHHHHHHHHHCCHHHTSS--HHHHHHHH-----HHHHHHHHHHHHHHHHHHCS------HHH
T ss_pred hhc--ccE-EEeCCcCCHHHHHHHHHHHHHhhcccchhHHHHHHHH-----HHHHhccchHhHHHHHHHcCCcceECcHH
Confidence 777 664 5666677888999999988876432221111222221 2233333333322211 23456899998
Q ss_pred HHHHHHH
Q psy7780 296 FKKSKES 302 (317)
Q Consensus 296 ~~~al~~ 302 (317)
+.+-++-
T Consensus 257 yL~~i~~ 263 (268)
T PF12780_consen 257 YLEFIKT 263 (268)
T ss_dssp HHHHHH-
T ss_pred HHHHHhh
Confidence 8776653
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.016 Score=50.95 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
+++.|+||+|||| .+|+.++++++. ..+++....
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~~~~~i~--~g~~lr~~~ 42 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEFGVEHVT--TGDALRANK 42 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe--ccHHHHHhc
Confidence 4578999999999 889999876554 455554433
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.035 Score=52.33 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=42.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEe-chhhhh-----------h--hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVV-GSELIQ-----------K--YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~-~s~l~~-----------~--~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
.+++.|++|+|||| +++.+... .++.+. ..++.- . -.|...-...+++..+.+..|..|++
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Iiv 241 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIV 241 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEEE
Confidence 67899999999999 66666542 233331 112210 0 01223345778889999999999999
Q ss_pred cccc
Q psy7780 143 DEID 146 (317)
Q Consensus 143 DEiD 146 (317)
.|+-
T Consensus 242 GEiR 245 (332)
T PRK13900 242 GELR 245 (332)
T ss_pred EecC
Confidence 9985
|
|
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.099 Score=56.77 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCC--CCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 200 GDVKVIMATNRIE--TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 200 ~~v~vI~tTN~~~--~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
-.|.+|.+|.||+ .|...++. -|..+|-|..-+..+-+.||..
T Consensus 1174 aGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263 1174 AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred cCeEEEEEecCcccccchHHHHh--hccceEEEEcCCHHHHHHhcCC
Confidence 5688999999986 57777776 6888899998888888888743
|
|
| >PRK03731 aroL shikimate kinase II; Reviewed | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.015 Score=49.04 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||+ .+|+.+|++|+..+
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 4678999999999 99999999988654
|
|
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.028 Score=49.38 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|..+++..+ +.++++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl~r~ 37 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI--STGDMLRA 37 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--ECCccHHH
Confidence 4678999999999 78998886554 45555543
|
|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.3 Score=43.84 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..+|++-+.+.. ...-|++|+++|.+... ....|...|++ -
T Consensus 71 IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~-----------AANALLKtLEE---P-------------------- 116 (263)
T PRK06581 71 IEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLN-----------AANSCLKILED---A-------------------- 116 (263)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEechHHhCHH-----------HHHHHHHhhcC---C--------------------
Confidence 4466666555532 23469999999998532 23445555544 2
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 249 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~ 249 (317)
|.++++|..|++++.|.|.+++ |+. .+.|+.|+...-.++....+..+
T Consensus 117 -P~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e~~~~~~~p~ 164 (263)
T PRK06581 117 -PKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNELYSQFIQPI 164 (263)
T ss_pred -CCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHHHHHHhcccc
Confidence 1568888889899999999999 994 89999999988888887777654
|
|
| >TIGR02239 recomb_RAD51 DNA repair protein RAD51 | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.064 Score=50.24 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=24.0
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
...+.+|+||-+-+++...... .+.-...+..+.+++..|..+.
T Consensus 189 ~~~~~LvVIDSI~al~r~~~~~-~~~~~~rq~~l~~~~~~L~~la 232 (316)
T TIGR02239 189 ESRFALLIVDSATALYRTDFSG-RGELSARQMHLARFLRSLQRLA 232 (316)
T ss_pred cCCccEEEEECcHHHhhhhcCC-cchHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999886542211 1111122344455555555443
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.11 Score=50.02 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=63.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC---------CceEEEEechhh-----hhh---------hcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---------SATFLRVVGSEL-----IQK---------YLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~l-----~~~---------~~g~~~~~l~~~f~~a~~~ 135 (317)
.++|.||+|+|||| -+|..+ ...++.+++-.. +.. ........+...+....
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~-- 253 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK-- 253 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC--
Confidence 57899999999999 344322 234555554221 111 12233344555444443
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
.-.+|+||.+..... + ...+.++...++...... ..++|+.+|.....+.
T Consensus 254 ~~DlVLIDTaGr~~~---------~---~~~l~el~~~l~~~~~~~------------------e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 254 DFDLVLVDTIGKSPK---------D---FMKLAEMKELLNACGRDA------------------EFHLAVSSTTKTSDVK 303 (388)
T ss_pred CCCEEEEcCCCCCcc---------C---HHHHHHHHHHHHhcCCCC------------------eEEEEEcCCCCHHHHH
Confidence 347999999876521 1 111334444444332110 3467888887777777
Q ss_pred ccccCCCc--ceeEEEeCCCCHHHHH
Q psy7780 216 PALIRPGR--IDRKIEFPLPDEKTKR 239 (317)
Q Consensus 216 ~al~rpgR--f~~~I~~~~P~~~~r~ 239 (317)
..+.+-.. ++ .+-|-..|+..+.
T Consensus 304 ~~~~~~~~~~~~-~~I~TKlDet~~~ 328 (388)
T PRK12723 304 EIFHQFSPFSYK-TVIFTKLDETTCV 328 (388)
T ss_pred HHHHHhcCCCCC-EEEEEeccCCCcc
Confidence 55543111 23 3344455554444
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.26 Score=49.21 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhCCceEeecccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
+..+-+.+....|..|+||-+..+..
T Consensus 119 ~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 119 FIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred HHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 33444455667889999999988753
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.038 Score=50.41 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEe-chhhh-----hhhcC-CchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVV-GSELI-----QKYLG-DGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~-~s~l~-----~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|.+++.|++|+|||| ++..++. ..++.+. ..++. .-.+. +......++...+.++.|.+|+++|+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 357899999999999 5544442 3455542 11211 11111 122346677777888899999999984
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.065 Score=49.24 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=43.0
Q ss_pred hHHHhhhcCCCchh---------hhhhcCCceEEEEechhhhhhhcCCch-----HHHHHHHHHHH--------hhCCce
Q psy7780 82 SELIQKYLGDGPKL---------AVANQTSATFLRVVGSELIQKYLGDGP-----KLVRELFRVAE--------EHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---------aiA~~~~~~~~~v~~s~l~~~~~g~~~-----~~l~~~f~~a~--------~~~P~I 139 (317)
|+|+.||.|.||++ ..-+++.-.|++|+|..+... +. ..++-.|.-|+ ......
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd----~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD----TAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc----hHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 89999999999998 334556679999999887532 11 01222222222 122469
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
+|+|||..++.
T Consensus 286 lfldeigelga 296 (531)
T COG4650 286 LFLDEIGELGA 296 (531)
T ss_pred EehHhhhhcCc
Confidence 99999998864
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.1 Score=54.34 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=40.0
Q ss_pred hHHHhhhcCCCchh------hhhhcCC--ceEEEEechh----hhhhhcCCchHHHHHHHHHHH----------hhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTS--ATFLRVVGSE----LIQKYLGDGPKLVRELFRVAE----------EHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~--~~~~~v~~s~----l~~~~~g~~~~~l~~~f~~a~----------~~~P~I 139 (317)
..++.|+||||||+ .++...+ ..++-+..+. -+....|.....++.++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 36789999999999 3344445 4555554332 223334544556666665321 123479
Q ss_pred Eeecccccc
Q psy7780 140 VFIDEIDAV 148 (317)
Q Consensus 140 i~iDEiD~l 148 (317)
|++||+--+
T Consensus 420 lIvDEaSMv 428 (720)
T TIGR01448 420 LIVDESSMM 428 (720)
T ss_pred EEEeccccC
Confidence 999998665
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.051 Score=49.72 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHhhhcCCCchh---hhhh---cCCceEEEEechhhh-h--hh-cCCchHHHHHHHHHHHh---hCCceEeeccccccc
Q psy7780 83 ELIQKYLGDGPKL---AVAN---QTSATFLRVVGSELI-Q--KY-LGDGPKLVRELFRVAEE---HAPSIVFIDEIDAVG 149 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l~-~--~~-~g~~~~~l~~~f~~a~~---~~P~Ii~iDEiD~l~ 149 (317)
+++.|.||+|||+ .++. +.+..+..++-..+. . .| -...++.+|..+..+-+ ....||++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 4689999999999 3333 356778788765554 1 12 12335555554443321 223799999887653
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.13 Score=43.95 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=12.5
Q ss_pred hCCceEeecccccccc
Q psy7780 135 HAPSIVFIDEIDAVGT 150 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~ 150 (317)
..|.++++||.+.-+.
T Consensus 115 ~~p~llilDEp~~~LD 130 (178)
T cd03239 115 KPSPFYVLDEIDAALD 130 (178)
T ss_pred CCCCEEEEECCCCCCC
Confidence 4689999999886543
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK01184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.021 Score=48.77 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh--hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL--AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~--aiA~~~~~~~~~v~~s~l~~ 115 (317)
+.+.|+||+|||| .++++.|++++.. ++++.
T Consensus 4 i~l~G~~GsGKsT~a~~~~~~g~~~i~~--~d~lr 36 (184)
T PRK01184 4 IGVVGMPGSGKGEFSKIAREMGIPVVVM--GDVIR 36 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCcEEEh--hHHHH
Confidence 3578999999999 6788888777554 45543
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.021 Score=48.58 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||| .+|+++|.. .++.++++-.
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~~~ 40 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLLRA 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHHHH
Confidence 4578999999999 788888754 5566665543
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.019 Score=51.23 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.||||+|||| .+|+.++++++ +..+++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~i--s~gdllr~ 43 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHI--NMGNILRE 43 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHHHH
Confidence 4678999999999 88898886555 45566544
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.098 Score=44.08 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHhhhcCCCchh---hhhh---cCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVAN---QTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s 111 (317)
.++.|+||+|||+ .+|. +.+..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 3578999999999 3333 235566666543
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.021 Score=48.80 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||+ .+|..++++.+ +..+++.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i--~~~~~~~ 37 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHI--STGDILR 37 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--EhHHHHH
Confidence 3578999999999 88888886554 4445443
|
|
| >PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.47 Score=39.99 Aligned_cols=130 Identities=15% Similarity=0.212 Sum_probs=67.3
Q ss_pred hhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHH
Q psy7780 87 KYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREI 163 (317)
Q Consensus 87 G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~ 163 (317)
+.+|||||| |+++-.+- +=.+..-++.++ ...+.++.+.+...+....+||.|==. ....+.
T Consensus 6 AtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNN-----------h~~reR 70 (168)
T PF08303_consen 6 ATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNN-----------HQKRER 70 (168)
T ss_pred cCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCC-----------chHHHH
Confidence 569999999 77766652 333433333222 345566677776644444678877322 222222
Q ss_pred HHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc--------cCCCcceeEEEeCCCCH
Q psy7780 164 QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL--------IRPGRIDRKIEFPLPDE 235 (317)
Q Consensus 164 ~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al--------~rpgRf~~~I~~~~P~~ 235 (317)
++.+..+-.....+-.. ..++.+|+-.-..+.-.+.+ +.-|==+..|.....+.
T Consensus 71 ~ql~~~~~~~~~~yl~~------------------~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~ 132 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPY------------------DTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDE 132 (168)
T ss_pred HHHHHHHHHhccccccc------------------CCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCH
Confidence 33333222221111100 14677777765444422222 22121235677666677
Q ss_pred HHHHHHHHHHhcCC
Q psy7780 236 KTKRRIFNIHTSRM 249 (317)
Q Consensus 236 ~~r~~Il~~~l~~~ 249 (317)
..-..|++.+++++
T Consensus 133 ~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 133 KKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHHHHhc
Confidence 77888888887765
|
Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.22 Score=40.80 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=34.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechh---hhhhhcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSE---LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~---l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
...+.|++|+|||+ +++..... --+.++... ++.. ...++ .-+-.+..|-...|.++++||-..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G~-~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGGE-KMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHHH-HHHHHHHHHHhcCCCEEEEeCCcc
Confidence 35688999999999 77776531 011111100 0000 11111 222234556667899999999654
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.021 Score=49.19 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.||||+|||+ .+|+..+++.+. ..+++.
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~lr 37 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQIS--TGDILR 37 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHHH
Confidence 3578999999999 888888876544 555544
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.021 Score=48.67 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|++|+|||+ .+|+.++.++++.+
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 5678999999999 88888887777543
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.049 Score=46.78 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=39.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEech-hhhh---h----------hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGS-ELIQ---K----------YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s-~l~~---~----------~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
.+++.|++|+|||+ +++..... ..+.+... ++.. . ..+.......+++..+.+..|.+|++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~i 106 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIV 106 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEE
Confidence 45789999999999 66665431 22222211 1110 0 00122345677788888888999999
Q ss_pred ccc
Q psy7780 143 DEI 145 (317)
Q Consensus 143 DEi 145 (317)
.|+
T Consensus 107 gEi 109 (186)
T cd01130 107 GEV 109 (186)
T ss_pred Ecc
Confidence 998
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.037 Score=49.81 Aligned_cols=33 Identities=6% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++-||||+||+| .+|+..+ +..++..+++...
T Consensus 34 i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~ 69 (244)
T PLN02674 34 LILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAA 69 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHH
Confidence 5688999999999 8888887 4566677776554
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.03 Score=56.63 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=37.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEe-chhh-----hhhhcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVV-GSEL-----IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~-~s~l-----~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
+.+|+.|+||+|||| +++.++. ..+..+. ..++ ...|. ............+....|.+|++||+-.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 367899999999999 6665553 3332331 1122 12221 0011123333344567899999999753
|
|
| >PRK14526 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.045 Score=48.17 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=24.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|..++.+ .++.++++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~--~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY--HISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eeecChHHHH
Confidence 3578999999999 788888755 4556666554
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.31 Score=48.35 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhCCceEeeccccccc
Q psy7780 124 LVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 124 ~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
.+..+........+..|+||=+..+.
T Consensus 108 ~l~~i~~~ls~g~~qRVvIDSl~aL~ 133 (484)
T TIGR02655 108 LIERINYAIRKYKAKRVSIDSVTAVF 133 (484)
T ss_pred HHHHHHHHHHHhCCcEEEEeehhHhh
Confidence 44555556666778889999777664
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.024 Score=49.61 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|+.+|+.. ++.++++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~--is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH--ISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe--eehhHHHHH
Confidence 3578999999999 7888887654 555566554
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.035 Score=48.76 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.||+|||||. ++|+..|.+++..+.-++...
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 4688999999998 999999999999988776553
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.4 Score=42.26 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=18.9
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~ 110 (317)
..++.|+||+|||+ .++. ..+-..+.++.
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46789999999998 2222 22445555553
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.37 Score=40.86 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred HHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHh
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 174 (317)
.+..|--..|.++++||--.-. +......+.+++..+
T Consensus 108 ~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~ 144 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHH
Confidence 4555566779999999965432 223345566666654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.042 Score=47.09 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=23.5
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++-|+||+|||| .+|+. .++.+++..++.-.
T Consensus 4 iilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r~ 37 (178)
T COG0563 4 LILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILRA 37 (178)
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhHh
Confidence 577999999999 78887 56677776655543
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.061 Score=50.15 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=41.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEe-chhhhh---h---------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVV-GSELIQ---K---------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~-~s~l~~---~---------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
.+++.|++|+|||| +++....- ..+.+. ..++.- . ..+...-...+++..+.+..|.+|++|
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~g 225 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILG 225 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEe
Confidence 67899999999999 66666532 222221 111110 0 011223456778888888999999999
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 226 E~r 228 (308)
T TIGR02788 226 ELR 228 (308)
T ss_pred ccC
Confidence 985
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.25 Score=45.42 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=29.2
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
..+|++|-+-++.+..... ++.....++.+.+.+..+.++...
T Consensus 142 i~LvVVDSvaa~~r~~~~~-d~~~~~~~r~ls~~l~~L~~~a~~ 184 (279)
T COG0468 142 IDLLVVDSVAALVRAEEIE-DGHLGLRARLLSKALRKLTRLANK 184 (279)
T ss_pred CCEEEEecCcccchhhhcC-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998888765433 333455567777777777766554
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.28 Score=44.21 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..|++|+||||||+
T Consensus 25 ~ili~G~pGsGKT~ 38 (249)
T PRK04328 25 VVLLSGGPGTGKSI 38 (249)
T ss_pred EEEEEcCCCCCHHH
Confidence 46899999999998
|
|
| >PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein [] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.076 Score=46.07 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEEEechhhhhhhcC------------------CchHHHHHHHHHHHhhCCceE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLRVVGSELIQKYLG------------------DGPKLVRELFRVAEEHAPSIV 140 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~~~~~g------------------~~~~~l~~~f~~a~~~~P~Ii 140 (317)
+++.|+||+|||+ .+..++ +-.++.|+.-++...... +.......+++.|......||
T Consensus 18 ~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~~nii 97 (199)
T PF06414_consen 18 IIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENRYNII 97 (199)
T ss_dssp EEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT--EE
T ss_pred EEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 4588999999999 555555 667888887665543211 112234455666666666666
Q ss_pred e
Q psy7780 141 F 141 (317)
Q Consensus 141 ~ 141 (317)
+
T Consensus 98 ~ 98 (199)
T PF06414_consen 98 F 98 (199)
T ss_dssp E
T ss_pred E
Confidence 6
|
It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D. |
| >COG4128 Zot Zonula occludens toxin [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.098 Score=47.98 Aligned_cols=122 Identities=20% Similarity=0.119 Sum_probs=68.5
Q ss_pred HHhhhcCCCchh-hhhhcC------CceEEE-Eechhhh---h---hhcCC------------chHHHHHHHHHHHhhCC
Q psy7780 84 LIQKYLGDGPKL-AVANQT------SATFLR-VVGSELI---Q---KYLGD------------GPKLVRELFRVAEEHAP 137 (317)
Q Consensus 84 Ll~G~pGtGKT~-aiA~~~------~~~~~~-v~~s~l~---~---~~~g~------------~~~~l~~~f~~a~~~~P 137 (317)
+.+|+||++||+ |++..+ |..++. |-+-.+- + +-.|+ .-...+..|+.|+..
T Consensus 5 ihhG~pGSyKTsgAv~~~~iPA~ksGR~IITNVrGl~ler~~~~~pd~~~~i~I~n~D~~~~d~~~~m~~~~~wa~~g-- 82 (398)
T COG4128 5 IHHGIPGSYKTSGAVCNVIIPAFKSGRRIITNVRGLQLERITERYPDATGEIIIVNDDVLKADFFPFMGGEGSWAQFG-- 82 (398)
T ss_pred EEecCCCCcccchhHHhhhhhhhcCCcEEEEecccccHHHHHHhccCCCCceEEEeccccCcccchhhcceeeccccC--
Confidence 358999999999 777655 433332 1111111 0 00111 111222334444444
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCcc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPA 217 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~a 217 (317)
+.|+|||...|++++=... =|+.+|.-. -..+..||..-+.|
T Consensus 83 afl~iDE~~rifpkswre~-------------dl~~~d~p~-------------------------~~~AedRp~~~~~a 124 (398)
T COG4128 83 AFLVIDEAWRIFPKSWRES-------------DLDMTDEPK-------------------------SFIAEDRPFTHPEA 124 (398)
T ss_pred cEEEEechhhccCcccccc-------------chhhhcCch-------------------------hhhhccCCCccccc
Confidence 6999999999999862211 122222211 23355778888888
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHH
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~ 245 (317)
.-|...|..-|.+-.|+-......++.-
T Consensus 125 ~trHRH~~wDivlttpnis~i~~~ir~~ 152 (398)
T COG4128 125 GTRHRHISWDIVLTTPNISNIARFIRDK 152 (398)
T ss_pred ccccccccccEEEcCccHHHHHHHHHHH
Confidence 8664357777888888877776666543
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.19 Score=53.86 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=41.0
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhhhh----hcCCchHHHHHHHHHHH-----hhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQK----YLGDGPKLVRELFRVAE-----EHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~~----~~g~~~~~l~~~f~~a~-----~~~P~Ii~iDEiD~ 147 (317)
.++.|+||||||+ .++...|..++-+..+....+ -.|.....|..++.... .....+|+|||+--
T Consensus 365 ~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEASM 444 (988)
T PRK13889 365 GVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAGM 444 (988)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECccc
Confidence 3589999999998 334455777777766544332 23444566666543211 11236999999865
Q ss_pred c
Q psy7780 148 V 148 (317)
Q Consensus 148 l 148 (317)
+
T Consensus 445 v 445 (988)
T PRK13889 445 V 445 (988)
T ss_pred C
Confidence 5
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.25 Score=49.06 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=43.9
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEech----hhhhh--hcC----------------------CchHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGS----ELIQK--YLG----------------------DGPKLVRE 127 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s----~l~~~--~~g----------------------~~~~~l~~ 127 (317)
..|+.|+||+|||+ ..+. ..|-+.++++.. ++... ..| ..+..+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~ 344 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQI 344 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHHH
Confidence 67899999999998 2222 224455555442 22211 011 01456677
Q ss_pred HHHHHHhhCCceEeecccccccc
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
+.+.+.+..|.+|+||-+..+..
T Consensus 345 i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 345 IKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHcCCCEEEEcCHHHHHH
Confidence 77778888899999999988754
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.024 Score=48.14 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=23.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
+++.|+||+|||| .++.+++.++++++.
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 5689999999999 888888877776644
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.079 Score=44.23 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
.|.|.||||||| ++++. |.+++.=.+..+..
T Consensus 3 ~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 578999999999 77777 88877554545543
|
|
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.094 Score=48.30 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=21.7
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~ 114 (317)
+++.|+||||||| .+++++ +..++ +.-++.
T Consensus 5 iil~G~pGSGKSTla~~L~~~~~~~~~l--~~D~~r 38 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKNPKAVNV--NRDDLR 38 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEE--eccHHH
Confidence 4678999999999 888887 55444 444443
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.092 Score=47.65 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=35.8
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~ 213 (317)
...-.+|+||-|-+++...... .+...+..+.|..++..|..+... .++.||.|..-...
T Consensus 131 ~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~-------------------~~iaVvvTNqv~~~ 190 (256)
T PF08423_consen 131 ESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARK-------------------YNIAVVVTNQVTTK 190 (256)
T ss_dssp HSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHH-------------------TT-EEEEEEEECSS
T ss_pred ccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHh-------------------CCceEEeeceeeec
Confidence 3445799999999998654221 122234456666666666555444 56777765544444
Q ss_pred CCc
Q psy7780 214 LDP 216 (317)
Q Consensus 214 Ld~ 216 (317)
.+.
T Consensus 191 ~~~ 193 (256)
T PF08423_consen 191 IDS 193 (256)
T ss_dssp TT-
T ss_pred CCc
Confidence 443
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.44 Score=44.18 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.3
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
|+..+.+|.|+..+...++...+.+
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 6788999999998888888777544
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.068 Score=50.27 Aligned_cols=65 Identities=26% Similarity=0.228 Sum_probs=41.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC-Cc-----------hHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG-DG-----------PKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g-~~-----------~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
.+.+.|+||+|||+ .+++..+.+++.-.+.+......+ +. ...... ...+.+.++.|||+|- +
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC-C
Confidence 45688999999999 899988998877776666654431 11 111112 2233345667999994 4
Q ss_pred cc
Q psy7780 147 AV 148 (317)
Q Consensus 147 ~l 148 (317)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 43
|
E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.27 Score=41.43 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.||+|+|||+ +++...
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 45688999999999 666654
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.071 Score=55.70 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhh----hhhcCCchHHHHHHHHHHH-----hhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELI----QKYLGDGPKLVRELFRVAE-----EHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~----~~~~g~~~~~l~~~f~~a~-----~~~P~Ii~iDEiD~ 147 (317)
.++.|+||||||+ .++...|..++-+..+... ....|.....+..+..... .....+|++||+--
T Consensus 371 ~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasM 450 (744)
T TIGR02768 371 AVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGM 450 (744)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECccc
Confidence 4689999999998 3344557777777555433 2233443444555422111 12347999999865
Q ss_pred c
Q psy7780 148 V 148 (317)
Q Consensus 148 l 148 (317)
+
T Consensus 451 v 451 (744)
T TIGR02768 451 V 451 (744)
T ss_pred C
Confidence 5
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.058 Score=51.38 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=39.1
Q ss_pred hhhHHHhhhcCCCchh---hhhhcC------CceEEEEec-hhhh------------hhhcCCchHHHHHHHHHHHhhCC
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQT------SATFLRVVG-SELI------------QKYLGDGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~------~~~~~~v~~-s~l~------------~~~~g~~~~~l~~~f~~a~~~~P 137 (317)
+|-+++.||+|+|||| +++.++ +..++.+.- .++. +..++............+....|
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 4578999999999999 666554 223333311 1111 11111111234455556777889
Q ss_pred ceEeecccc
Q psy7780 138 SIVFIDEID 146 (317)
Q Consensus 138 ~Ii~iDEiD 146 (317)
.+|++.|+-
T Consensus 214 d~i~vGEiR 222 (358)
T TIGR02524 214 HAILVGEAR 222 (358)
T ss_pred CEEeeeeeC
Confidence 999999864
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.063 Score=50.26 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=40.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA 132 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a 132 (317)
+|.-||.|+|||- -+|.-.++||+.|.++.+.. .|+|.- +..+|++-+.|
T Consensus 53 ILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~a 107 (444)
T COG1220 53 ILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (444)
T ss_pred eEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHH
Confidence 5678999999998 89999999999999987654 466654 66777776654
|
|
| >PRK14529 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.044 Score=48.67 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
++|.||||+|||| .+|..++.+. ++.++++...+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr~~i 39 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFREHI 39 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhhhhc
Confidence 3578999999999 7899988665 45566665543
|
|
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.034 Score=47.24 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
+++.|++|+|||+ .+|+.++++++..+.
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4688999999999 999999999887764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.34 Score=40.86 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.|+.|+|||+ +++...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 35688999999999 666654
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.34 Score=42.37 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=12.0
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 32 ~~l~G~n~~GKst 44 (204)
T cd03282 32 HIITGPNMSGKST 44 (204)
T ss_pred EEEECCCCCCHHH
Confidence 6789999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.053 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred hhcCCCchh---hhhhcCCceEEEEe
Q psy7780 87 KYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 87 G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
|..|||||+ ++|+++++.|+.=+
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGD 27 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGD 27 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceeccc
Confidence 789999999 99999999988743
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.067 Score=50.65 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=41.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEec-hhhhh------------hhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVG-SELIQ------------KYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~-s~l~~------------~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
.+++.|++|+|||| +++.+... .++.+.- .++.- ...|...-...+++..+.+..|..|++.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~IivG 243 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLG 243 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEEE
Confidence 57899999999999 77776532 2222211 11110 0012223456788888999999999998
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 244 EiR 246 (344)
T PRK13851 244 EMR 246 (344)
T ss_pred eeC
Confidence 874
|
|
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.044 Score=48.68 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=22.7
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~ 110 (317)
.++.||||+|||| .+-+++|.++..|+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNL 38 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNL 38 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEec
Confidence 3567999999999 788888988777753
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.65 Score=39.73 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=21.9
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
.+.|.+|+|||+ .+++..+++++ ++-++.....
T Consensus 3 ~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~ 38 (188)
T TIGR00152 3 GLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVV 38 (188)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHH
Confidence 478999999999 56665556665 4445544433
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.43 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=17.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..++.|++|||||+ |+|.-.
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999 888755
|
|
| >PRK04182 cytidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.04 Score=46.40 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||+ .+|..++++++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 3578999999999 999999988765
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.22 Score=41.21 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCc--eEEEEechhhh-------hhhcC-----CchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELI-------QKYLG-----DGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~-------~~~~g-----~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
..+.|++|+|||+ +++..... --+.+++..+. ...++ .+...-+-.+..|-...|.++++||.
T Consensus 28 ~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp 107 (157)
T cd00267 28 VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEP 107 (157)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5688999999999 77776532 11233322111 01011 01112222355555567899999997
Q ss_pred ccc
Q psy7780 146 DAV 148 (317)
Q Consensus 146 D~l 148 (317)
..=
T Consensus 108 ~~~ 110 (157)
T cd00267 108 TSG 110 (157)
T ss_pred CcC
Confidence 643
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.22 Score=41.82 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHHHHHHHh----hCCceEeecccccccc
Q psy7780 125 VRELFRVAEE----HAPSIVFIDEIDAVGT 150 (317)
Q Consensus 125 l~~~f~~a~~----~~P~Ii~iDEiD~l~~ 150 (317)
.+..++.|++ ....+|+|||+-....
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~ 109 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALG 109 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhh
Confidence 4445555543 3468999999987654
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.084 Score=49.23 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
.+.+.|+||||||+ .+|+.+|++|+.++
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 35688999999999 99999999999543
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.096 Score=49.11 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=41.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEe-chhhhh---h---hcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVV-GSELIQ---K---YLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~-~s~l~~---~---~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..++.|++|+|||+ +++.+. ...++.+. ..++.- . +....+....+++..+.+..|..|++.|+-
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEiR 229 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEVR 229 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEeccC
Confidence 56889999999999 666542 12333332 122210 0 111223457788889999999999999974
|
|
| >PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.096 Score=52.75 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
.+.|.|+||+|||+ .+|+.++++|+.++-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 35678999999999 999999999998863
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.18 Score=43.13 Aligned_cols=64 Identities=22% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCc--eEEEEechhh--hhhh--cCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA--TFLRVVGSEL--IQKY--LGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l--~~~~--~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
..+.|+.|+|||| .++..... --+.+++..+ .... ... ...-+-.+..|-...|.++++||--.
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4578999999999 66665421 1122222110 0000 111 11233345556667799999999643
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.27 Score=44.01 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHhhhcCCCchh--------hhhhcCCce--------------EEEEechh-hhh--hhcCCchHHHHHHHHHHHhhCC
Q psy7780 83 ELIQKYLGDGPKL--------AVANQTSAT--------------FLRVVGSE-LIQ--KYLGDGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 83 ~Ll~G~pGtGKT~--------aiA~~~~~~--------------~~~v~~s~-l~~--~~~g~~~~~l~~~f~~a~~~~P 137 (317)
.++.||...|||+ ++-.++|+. +.++...+ +.. .....--+.+..+++.+.+ .
T Consensus 46 ~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~--~ 123 (235)
T PF00488_consen 46 IIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE--K 123 (235)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T--T
T ss_pred EEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc--c
Confidence 5799999999998 333345531 12222111 110 0111113456677776654 4
Q ss_pred ceEeecccc
Q psy7780 138 SIVFIDEID 146 (317)
Q Consensus 138 ~Ii~iDEiD 146 (317)
++|+|||+-
T Consensus 124 sLvliDE~g 132 (235)
T PF00488_consen 124 SLVLIDELG 132 (235)
T ss_dssp EEEEEESTT
T ss_pred eeeeccccc
Confidence 799999985
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.087 Score=49.44 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=41.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEe-chhhhhh------hcCCchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVV-GSELIQK------YLGDGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~-~s~l~~~------~~g~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
.+++.|++|+|||| +++.+. +..++.+. ..++.-. +.........+++..|.+..|..|++.|+
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 56899999999999 666654 22334332 2222210 11122335777888888999999999887
|
|
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.03 Score=48.17 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.||||+|||+ .+|+.++.. .++..+++..
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~~~--~is~gd~~r~ 43 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELGLK--KLSTGDILRD 43 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--CCCccHHHHH
Confidence 5689999999999 788888764 4445555543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.92 Score=47.32 Aligned_cols=148 Identities=19% Similarity=0.275 Sum_probs=81.8
Q ss_pred HHHhhhcCCCchhhh-------hhcCCceEEEEechhh-----h-------hhhcC---Cc-------------hHHHHH
Q psy7780 83 ELIQKYLGDGPKLAV-------ANQTSATFLRVVGSEL-----I-------QKYLG---DG-------------PKLVRE 127 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ai-------A~~~~~~~~~v~~s~l-----~-------~~~~g---~~-------------~~~l~~ 127 (317)
.+|..|.|.||||.+ +...++-++.++.++- + +.+.. +. ...+..
T Consensus 40 ~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~ 119 (894)
T COG2909 40 ILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSS 119 (894)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHH
Confidence 578999999999922 2233456777765431 1 11111 11 224455
Q ss_pred HHHH-HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEE
Q psy7780 128 LFRV-AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206 (317)
Q Consensus 128 ~f~~-a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~ 206 (317)
+|.. +....|+.++|||.+.+-.. .+...+..|++. .|.++.+|.
T Consensus 120 L~~Ela~~~~pl~LVlDDyHli~~~----------~l~~~l~fLl~~------------------------~P~~l~lvv 165 (894)
T COG2909 120 LLNELASYEGPLYLVLDDYHLISDP----------ALHEALRFLLKH------------------------APENLTLVV 165 (894)
T ss_pred HHHHHHhhcCceEEEeccccccCcc----------cHHHHHHHHHHh------------------------CCCCeEEEE
Confidence 5554 34556999999999987432 244555566554 237788888
Q ss_pred EcCCCCCCCccccCCCcceeEEEeC----CCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCC
Q psy7780 207 ATNRIETLDPALIRPGRIDRKIEFP----LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 268 (317)
Q Consensus 207 tTN~~~~Ld~al~rpgRf~~~I~~~----~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s 268 (317)
+|...-.+.-+=+|-. +..++++ ..+.++-.+++....+ .++ +..++..+-..|+|+.
T Consensus 166 ~SR~rP~l~la~lRlr--~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~ 227 (894)
T COG2909 166 TSRSRPQLGLARLRLR--DELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWA 227 (894)
T ss_pred EeccCCCCcccceeeh--hhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHH
Confidence 8854322222222100 2233333 2367888888877652 222 2334666666777753
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.51 Score=41.77 Aligned_cols=14 Identities=7% Similarity=-0.135 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.|.|||+
T Consensus 32 ~~~itG~n~~gKs~ 45 (218)
T cd03286 32 ILVLTGPNMGGKST 45 (218)
T ss_pred EEEEECCCCCchHH
Confidence 35799999999997
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.64 Score=44.58 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..|+.|.||||||+
T Consensus 12 TLLIKG~PGTGKTt 25 (484)
T PF07088_consen 12 TLLIKGEPGTGKTT 25 (484)
T ss_pred EEEEecCCCCCcee
Confidence 56889999999998
|
GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding |
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.067 Score=52.52 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=38.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCce---EEEEe------chhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSAT---FLRVV------GSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~---~~~v~------~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|.+|+.||.|+|||+ ++.++++.+ ++.+. -+.+.+-.+.+. .-.....++...++.|.||.+.||-.
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 367999999999999 555555543 33331 111211111110 11223344445568899999999854
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.12 Score=51.01 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=41.0
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEec-hhh-----hhhhcCC-chHHHHHHHHHHHhhCCceEeecccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVG-SEL-----IQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~-s~l-----~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|.+|+.||.|+|||| ++.+++ +.+++.+.- -+. .+..++. ...........+.++.|.||++.|+-
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 468999999999999 433444 344555421 121 1111221 12345666677778899999999975
|
|
| >PRK13975 thymidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.083 Score=45.37 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATF 105 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~ 105 (317)
+.|.|++|+|||| .+|+.++..+
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 4578999999999 9999988644
|
|
| >PLN02459 probable adenylate kinase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.095 Score=47.60 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=24.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++|.||||+|||+ .+|+.+++ .+++.++++..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~--~~is~gdllR~ 66 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGV--PHIATGDLVRE 66 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--cEEeCcHHHHH
Confidence 4567999999999 88888774 55666676654
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=91.57 E-value=4.2 Score=37.15 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=47.3
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 226 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 226 ~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
..+.++.|+..+...+++..+++.+.. +...+..++..+.| |+..+.++.-..++-.+...||.+|+++.+..
T Consensus 104 ~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~----d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 104 QIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEG----NLLAIAQELEKLALYAPDGKITLEDVEEAVSD 177 (302)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc----HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhh
Confidence 478889999999999999988876654 33345566666443 55555444433333333346899998877653
|
subunit around DNA forming a DNA sliding clamp. |
| >PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.19 Score=48.69 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=25.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
-+.+.|++|||||| ++|+..|..++.--+-+..
T Consensus 221 ~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 221 TVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 45688999999999 9999988876665444444
|
|
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.15 Score=44.23 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=19.0
Q ss_pred hHHHhhhcCCCchh-------hhhhc---CCceEEEEech
Q psy7780 82 SELIQKYLGDGPKL-------AVANQ---TSATFLRVVGS 111 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~---~~~~~~~v~~s 111 (317)
+.|+.|.+|+|||+ .++.. -...++-+++.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 68999999999998 33332 24577777654
|
The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.12 Score=52.39 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=41.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEech------hhhhhhcC-CchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVGS------ELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s------~l~~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|.+|+.||+|+|||| ++.++++ .+++.+.-+ .+.+..+. +...........+.++.|.||++.|+-.
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 467899999999998 4444443 345544221 11111111 1123456667777888999999999854
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >TIGR02173 cyt_kin_arch cytidylate kinase, putative | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.058 Score=45.04 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||+ .+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 3578999999999 8999999886653
|
Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. |
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.08 Score=53.39 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=24.8
Q ss_pred HHHhhhcCCCchh-------hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL-------AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~s~l 113 (317)
-|+.||||||||. .++...+.++..+.+|.+
T Consensus 428 sLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNi 465 (935)
T KOG1802|consen 428 SLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNI 465 (935)
T ss_pred eeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccch
Confidence 4799999999997 667777778888777654
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.11 Score=51.62 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=39.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEec-hhhh-----hhhcCC-chHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVG-SELI-----QKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~-s~l~-----~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|-+++.||+|+|||| ++.+++. .+++.+.- .+.. +..+.. ...........+.++.|.||++.|+-.
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 357899999999999 4445543 34555422 1111 111111 112344555566778899999999853
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.56 Score=41.35 Aligned_cols=13 Identities=23% Similarity=-0.023 Sum_probs=12.0
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 33 ~~l~Gpn~sGKst 45 (216)
T cd03284 33 LLITGPNMAGKST 45 (216)
T ss_pred EEEECCCCCChHH
Confidence 5789999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.32 Score=42.35 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=11.8
Q ss_pred CCCCccccCCCcceeEEEeCCCCHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
+.+|..+++ +-|.+..+..|-.+
T Consensus 145 EtVPD~~l~--~Adev~lVDi~Pe~ 167 (211)
T PF02702_consen 145 ETVPDSVLD--RADEVELVDITPEE 167 (211)
T ss_dssp S-B-HHHHH--T-SCEEEB---HHH
T ss_pred eeCCHHHHh--hcCeEEEecCCHHH
Confidence 447778887 77877777766543
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B. |
| >PRK11545 gntK gluconate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.1 Score=43.93 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=17.8
Q ss_pred hhcCCCchh---hhhhcCCceEEE
Q psy7780 87 KYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 87 G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
|+||||||+ +++..++..++.
T Consensus 2 G~sGsGKSTla~~la~~l~~~~~~ 25 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHAAFLD 25 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCCeEEe
Confidence 899999999 889999875554
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.31 Score=52.76 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhh----hhhhcCCchHHHHHHH-HHHH----hhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSEL----IQKYLGDGPKLVRELF-RVAE----EHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l----~~~~~g~~~~~l~~~f-~~a~----~~~P~Ii~iDEiD~ 147 (317)
.++.|++|||||+ .+++..|..++-+..+.- +....|.....|..+. .... .....+|+|||+--
T Consensus 400 ~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsM 479 (1102)
T PRK13826 400 AAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGM 479 (1102)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECccc
Confidence 5689999999999 334466878777755432 2233444445555532 2111 11246999999875
Q ss_pred c
Q psy7780 148 V 148 (317)
Q Consensus 148 l 148 (317)
+
T Consensus 480 v 480 (1102)
T PRK13826 480 V 480 (1102)
T ss_pred C
Confidence 5
|
|
| >TIGR02653 Lon_rel_chp conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.88 Score=46.41 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHhCCCCCHHHHHHHHHHHH-HHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 260 LIMAKDDLSGADIKAICTEAG-LMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 260 ia~~t~g~s~~dl~~l~~~A~-~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
......+++.+|..++-+... +.-+---...++.+|++++++-.+..++
T Consensus 396 ~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~Ale~Rr 445 (675)
T TIGR02653 396 FFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYAMEGRR 445 (675)
T ss_pred hEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 334457899999988876543 2223234567999999999988776653
|
This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]. |
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.061 Score=43.31 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=15.2
Q ss_pred HHhhhcCCCchh---hhhhcC
Q psy7780 84 LIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~ 101 (317)
-|+|+||||||. .||+.+
T Consensus 57 SfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHH
Confidence 489999999998 777763
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.042 Score=46.29 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=18.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
..+++|+||+|||+ ++...+ +.-++.+++...
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46799999999998 333333 222777776654
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.1 Score=39.04 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhhC-CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCC
Q psy7780 122 PKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPG 200 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (317)
-..+|++.+.+.... ..-++|+++|.+... ..+.|...|++ - |.
T Consensus 39 Vd~iReii~~~~~~~~~~k~iI~~a~~l~~~-----------A~NaLLK~LEE---P---------------------p~ 83 (206)
T PRK08485 39 IEDAKEVIAEAYIAESEEKIIVIAAPSYGIE-----------AQNALLKILEE---P---------------------PK 83 (206)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEchHhhCHH-----------HHHHHHHHhcC---C---------------------CC
Confidence 456777777665332 233557888877422 23344444443 2 26
Q ss_pred CeEEEEEcCCCCCCCccccCCCccee------------EEEeCCCCHHHHHHHHHHH
Q psy7780 201 DVKVIMATNRIETLDPALIRPGRIDR------------KIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 201 ~v~vI~tTN~~~~Ld~al~rpgRf~~------------~I~~~~P~~~~r~~Il~~~ 245 (317)
++++|.+|+.+..+.|.+++ |+.. .+.+...+.++..+.++.+
T Consensus 84 ~~~fiL~t~~~~~llpTI~S--Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~ 138 (206)
T PRK08485 84 NICFIIVAKSKNLLLPTIRS--RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKEL 138 (206)
T ss_pred CeEEEEEeCChHhCchHHHh--hheeccccccccccccccccCCCCHHHHHHHHHHH
Confidence 78889999999999999999 8863 4677788888888888773
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.86 Score=38.22 Aligned_cols=20 Identities=30% Similarity=0.189 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.|+.|+|||+ +++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999 666654
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.17 Score=45.75 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=22.1
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEech
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVVGS 111 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~s 111 (317)
..|++|+||||||+ ..|.+ |-+.+.++..
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~ 60 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTE 60 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence 57899999999998 34444 7778887654
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.43 Score=47.60 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=40.6
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechh----hhhh--hcC----------------------CchHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSE----LIQK--YLG----------------------DGPKLVRE 127 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~----l~~~--~~g----------------------~~~~~l~~ 127 (317)
..+++|+||+|||+ .++. ..|-..++++..+ +... ..| ..+..+..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 354 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDHLII 354 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHHHHHH
Confidence 56789999999998 2222 2355555554421 1110 000 01233444
Q ss_pred HHHHHHhhCCceEeecccccccc
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
+-+...+..|.+|+||-+..+..
T Consensus 355 i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 355 IKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHcCCCEEEEcCHHHHHH
Confidence 45555667889999999998864
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.44 Score=46.03 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=37.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEec--hh-----hhhhh---------cCCchHHHHHHHHHHHhh-CCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVG--SE-----LIQKY---------LGDGPKLVRELFRVAEEH-APS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~--s~-----l~~~~---------~g~~~~~l~~~f~~a~~~-~P~ 138 (317)
.++|.||+|+|||| .+|..+ +..+..+++ .. -...| ....+..+.+....++.. .-.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~D 322 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVD 322 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCC
Confidence 56799999999999 444433 333333333 11 11111 134456666666666542 347
Q ss_pred eEeeccccc
Q psy7780 139 IVFIDEIDA 147 (317)
Q Consensus 139 Ii~iDEiD~ 147 (317)
+||||-...
T Consensus 323 vVLIDTaGR 331 (436)
T PRK11889 323 YILIDTAGK 331 (436)
T ss_pred EEEEeCccc
Confidence 899986543
|
|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.29 Score=41.28 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
+.+.|+||+|||+ ++|..+ +..+..+++-.+
T Consensus 7 i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4578999999999 666665 445666665443
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.49 Score=49.81 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.+.|||+
T Consensus 329 ~~iITGpN~gGKTt 342 (782)
T PRK00409 329 VLVITGPNTGGKTV 342 (782)
T ss_pred EEEEECCCCCCcHH
Confidence 36789999999997
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.83 Score=44.61 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.++|.||+|+||||
T Consensus 223 ~i~~vGptGvGKTT 236 (424)
T PRK05703 223 VVALVGPTGVGKTT 236 (424)
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999998
|
|
| >PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2 | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.083 Score=44.06 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=23.5
Q ss_pred cCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 89 LGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 89 pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
||+|||+ .+|..++++|+.++- ++....|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~--~i~~~~g 32 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDD--EIEERTG 32 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHH--HHHHHHT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCH--HHHHHhC
Confidence 7999999 999999999998764 4444455
|
7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.096 Score=44.18 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=19.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC-ceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS-ATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~-~~~~~v~ 109 (317)
+.+.|+||+|||| .+|.+++ ..++..+
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3467999999999 7888775 4444443
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.1 Score=52.06 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=20.1
Q ss_pred hHHHhhhcCCCchh----hhhhc--CCceEEEEechh
Q psy7780 82 SELIQKYLGDGPKL----AVANQ--TSATFLRVVGSE 112 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~--~~~~~~~v~~s~ 112 (317)
+.+++||||||||. .|.+. .+..++.+-++.
T Consensus 203 l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn 239 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSN 239 (649)
T ss_pred ceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCch
Confidence 67899999999998 22222 244555554443
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.17 Score=46.48 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.++|.||+|+||||
T Consensus 196 vi~~vGptGvGKTT 209 (282)
T TIGR03499 196 VIALVGPTGVGKTT 209 (282)
T ss_pred EEEEECCCCCCHHH
Confidence 57789999999999
|
|
| >COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.69 E-value=6.6 Score=35.62 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=48.3
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+.==-|..+++..+.+.-|.. .+-.++++.-+.=|....+..... --....++. -.+++.+-......|-.
T Consensus 193 GvHlVPg~i~~~~~~~n~~~~--~l~i~dee~Hr~RF~~R~~~t~~~--rp~~Ryl~y-----f~EiR~I~Dyl~~~Are 263 (299)
T COG2074 193 GVHLVPGLIKEEALGNNVFMF--MLYIADEELHRERFYDRIRYTHAS--RPGGRYLEY-----FKEIRTIHDYLVERARE 263 (299)
T ss_pred eeeeccccccHhhhccceEEE--EEEeCCHHHHHHHHHHHHHHHhcc--CchhHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 333447888877763333433 444455544433332222111001 111222222 23555555555566666
Q ss_pred hcCCCcCHHHHHHHHHHHHh
Q psy7780 286 ERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~ 305 (317)
.+-+.+..+|+.+++.+++.
T Consensus 264 ~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 264 HGVPVIENDDIDETVDRILE 283 (299)
T ss_pred cCCCeeccccHHHHHHHHHH
Confidence 67788999999999888875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-126
Identities = 113/222 (50%), Positives = 159/222 (71%), Gaps = 19/222 (8%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA +T+ATF+RVVGSEL++K++G+G LV+++F++A+E APSI+FIDEIDA+ KR D+
Sbjct: 70 AVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+GG+RE+QRT+++LL ++DGFD+R GDVK+I ATNR + LD
Sbjct: 130 LTGGDREVQRTLMQLLAEMDGFDAR-------------------GDVKIIGATNRPDILD 170
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PA++RPGR DR IE P PDEK + I IHT +M LAEDVNL+E+ + GA++KAI
Sbjct: 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAI 230
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
CTEAG+ A+RE R VT +DF+K+ E ++ +KK E +L
Sbjct: 231 CTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVKVKEPAHL 272
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 1e-66
Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 39/225 (17%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVAN+T A F + G E++ K G+ +R+ F AE++AP+I+FIDE+DA+ KR +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+ ER R + +LL +DG R V V+ ATNR ++D
Sbjct: 317 HGEVER---RIVSQLLTLMDGLKQR-------------------AHVIVMAATNRPNSID 354
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL R GR DR+++ +PD + I IHT M LA+DV+L+++ GAD+ A+
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414
Query: 276 CTEAGLMALRERR-----------------MKVTNEDFKKSKESV 303
C+EA L A+R++ + VT +DF+ +
Sbjct: 415 CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 4e-61
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 19/218 (8%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++F DE+D++ R +
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
G R + ++L ++DG ++ +V +I ATNR + +D
Sbjct: 128 IGDGGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIID 168
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L + SGAD+ I
Sbjct: 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 228
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE 313
C A +A+RE + ++ +E P
Sbjct: 229 CQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 266
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 1e-59
Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 34/229 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTK 151
V + + + EL G+ KL+R+ +R A E +FI+++DA +
Sbjct: 55 LVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGR 114
Query: 152 RYDSNSGG--EREIQRTMLELLN-----QLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204
+ + + T++ + + QL G ++ +N R V +
Sbjct: 115 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR----------------VPI 158
Query: 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 264
I+ N TL LIR GR+++ P +++ + + ++V ++++
Sbjct: 159 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG------VCTGIFRTDNVPAEDVVKIV 212
Query: 265 DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE 313
D+ G I + E R V+ +K + +L +G P
Sbjct: 213 DNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLL-NSFDGPPT 260
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 9e-58
Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 38/224 (16%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVAN++ F+ V G EL+ Y+G+ + VR++F+ A+ AP ++F DE+DA+ +R D
Sbjct: 63 AVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR 122
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+G R + +LL ++DG ++R V ++ ATNR + +D
Sbjct: 123 ETGAS---VRVVNQLLTEMDGLEAR-------------------QQVFIMAATNRPDIID 160
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHT---SRMTLAEDVNLQEL--IMAKDDLSGA 270
PA++RPGR+D+ + LP + I T ++ L DVNL+ + + D +GA
Sbjct: 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGA 220
Query: 271 DIKAICTEAGLMALRER-----------RMKVTNEDFKKSKESV 303
D+ A+ EA + ALR+ +KV+++ F+++ + V
Sbjct: 221 DLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 4e-51
Identities = 78/214 (36%), Positives = 107/214 (50%), Gaps = 26/214 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + FL + G+E ++ G G VR LF+ A AP IV+IDEIDAVG KR +
Sbjct: 58 AVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT 117
Query: 156 NSGG---EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212
SG E E +T+ +LL ++DG + V V+ +TNR +
Sbjct: 118 MSGFSNTEEE--QTLNQLLVEMDGMGTTDH-------------------VIVLASTNRAD 156
Query: 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD--LSGA 270
LD AL+RPGR+DR + LP + +R IF H + L + +A+ SGA
Sbjct: 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGA 216
Query: 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
DI IC EA L A RE V +F+ + E VL
Sbjct: 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERVL 250
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 1e-50
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 24/209 (11%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + ++TF V S+L+ K++G+ KLV++LF +A E+ PSI+FID++DA+ R +
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
S R R ELL Q++G + Q V V+ ATN LD
Sbjct: 130 ESEASR---RIKTELLVQMNGVGNDSQG------------------VLVLGATNIPWQLD 168
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAKDDLSGADIKA 274
A+ R R +R+I PLPD + +F I+ + + + L + SG+DI
Sbjct: 169 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226
Query: 275 ICTEAGLMALRERRMKVTNEDFKKSKESV 303
+ +A + +R+ + +D +
Sbjct: 227 VVKDALMQPIRKIQSATHFKDVSTEDDET 255
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 2e-50
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 34/221 (15%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + SATFL + + L KY+GDG KLVR LF VA PSI+FIDE+D++ ++R S
Sbjct: 73 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 132
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
R R E L + DG R + V+ ATNR + LD
Sbjct: 133 EHEASR---RLKTEFLVEFDGLPGNPDGDR----------------IVVLAATNRPQELD 173
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKA 274
A +R R +++ LPDE+T+ + N + + L+ L D SG+D+ A
Sbjct: 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231
Query: 275 ICTEAGLMALRERRMK------------VTNEDFKKSKESV 303
+ +A L +RE ++ +T +DF S + +
Sbjct: 232 LAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 6e-50
Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 37/222 (16%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
+A+Q+ ATF + S L K++G+G K+VR LF VA P+++FIDEID++ ++R
Sbjct: 136 CIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR--- 192
Query: 156 NSGGEREIQRTML-ELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
GE E R + E L QLDG + ++R + V+ ATNR + +
Sbjct: 193 -GDGEHESSRRIKTEFLVQLDGATTSSEDR-----------------ILVVGATNRPQEI 234
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR-MTLAEDVNLQELIMAKDDLSGADIK 273
D A R R+ +++ PLP+ +++I S+ + +++++ D SGAD+
Sbjct: 235 DEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT 292
Query: 274 AICTEAGLMALRERRMK------------VTNEDFKKSKESV 303
+C EA L +R + + DF+ + +V
Sbjct: 293 QLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 4e-49
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + ++TF V S+L+ K++G+ KLV++LF +A E+ PSI+FID++DA+ R +
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 162
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
S R R ELL Q++G + Q V V+ ATN LD
Sbjct: 163 ESEASR---RIKTELLVQMNGVGNDSQG------------------VLVLGATNIPWQLD 201
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAKDDLSGADIKA 274
A+ R R +R+I PLPD + +F I+ ++ + + L + SG+DI
Sbjct: 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259
Query: 275 ICTEAGLMALRERRMKVTNEDFKKSKESV 303
+ +A + +R+ + +D +
Sbjct: 260 VVKDALMQPIRKIQSATHFKDVSTEDDET 288
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 8e-49
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 25/209 (11%)
Query: 96 AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
AVA + ++TF + S+L+ K+LG+ KLV+ LF++A E+ PSI+FIDEID++ R +
Sbjct: 64 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
+ S R R E L Q+ G + V+ ATN L
Sbjct: 124 NESEAAR---RIKTEFLVQMQGVGVDNDG------------------ILVLGATNIPWVL 162
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 273
D A+ R R +++I PLP+ + +F +H + + + +EL D SGADI
Sbjct: 163 DSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS 220
Query: 274 AICTEAGLMALRERRMKVTNEDFKKSKES 302
I +A + +R+ + + + +
Sbjct: 221 IIVRDALMQPVRKVQSATHFKKVRGPSRA 249
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 1e-48
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA +++ATF + + L KY+G+G KLVR LF VA E PSI+FID++D++ +R +
Sbjct: 167 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG 226
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
R R E L + DG S +R V V+ ATNR + LD
Sbjct: 227 EHDASR---RLKTEFLIEFDGVQSAGDDR-----------------VLVMGATNRPQELD 266
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAKDDLSGADIKA 274
A++R R +++ LP+E+T+ + + + L +L D SG+D+ A
Sbjct: 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTA 324
Query: 275 ICTEAGLMALRERRMK------------VTNEDFKKSKESV 303
+ +A L +RE + + + DF +S + +
Sbjct: 325 LAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-48
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 23/212 (10%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F + GS I+ ++G G VR+LF A++ APSI+FIDEIDA+G R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 156 NSGG---EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212
ERE +T+ +LL ++DGF S V V+ ATNR E
Sbjct: 123 GVVSGNDERE--QTLNQLLAEMDGFGSENAP------------------VIVLAATNRPE 162
Query: 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADI 272
LDPAL+RPGR DR++ PD + I +H + LA DVNLQE+ L+GAD+
Sbjct: 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADL 222
Query: 273 KAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
I EA L+A R + +V + K++ E +
Sbjct: 223 ANIINEAALLAGRNNQKEVRQQHLKEAVERGI 254
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-47
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 19/209 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+A + F + GS+ ++ ++G G VR++F A++ AP I+FIDEIDAVG +R
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ ++L ++DGF+ + VI ATNR + LD
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLD 164
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD + + +I +H R+ LA D++ + SGAD+ +
Sbjct: 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 224
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVL 304
EA L A R + V+ +F+K+K+ ++
Sbjct: 225 VNEAALFAARGNKRVVSMVEFEKAKDKIM 253
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 1e-45
Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 19/204 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF+ + V+ ATNR + LD
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILD 192
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I PD K + +I IH LAEDV+L L GAD++ +
Sbjct: 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 252
Query: 276 CTEAGLMALRERRMKVTNEDFKKS 299
EA L+A RE R K+T +D +++
Sbjct: 253 LNEAALLAAREGRRKITMKDLEEA 276
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-45
Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 19/204 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 68 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF+ + V+ ATNR + LD
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILD 168
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I PD K + +I IH LAEDV+L L GAD++ +
Sbjct: 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 228
Query: 276 CTEAGLMALRERRMKVTNEDFKKS 299
EA L+A RE R K+T +D +++
Sbjct: 229 LNEAALLAAREGRRKITMKDLEEA 252
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 3e-45
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 25/209 (11%)
Query: 96 AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
AVA + ++TF + S+L+ K+LG+ KLV+ LF++A E+ PSI+FIDEID++ R +
Sbjct: 186 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 245
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
+ S R R E L Q+ G + V+ ATN L
Sbjct: 246 NESEAAR---RIKTEFLVQMQGVGVDNDG------------------ILVLGATNIPWVL 284
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 273
D A+ R R +++I PLP+ + +F +H + + + QEL D SGADI
Sbjct: 285 DSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS 342
Query: 274 AICTEAGLMALRERRMKVTNEDFKKSKES 302
I +A + +R+ + + + +
Sbjct: 343 IIVRDALMQPVRKVQSATHFKKVRGPSRA 371
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 3e-41
Identities = 87/215 (40%), Positives = 120/215 (55%), Gaps = 31/215 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + + F + GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG R
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127
Query: 156 NSGG--EREIQRTMLELLNQL----DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209
GG ERE + LNQL DGFDS+ + V+ ATN
Sbjct: 128 LGGGHDERE------QTLNQLLVEMDGFDSK-------------------EGIIVMAATN 162
Query: 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 269
R + LDPAL+RPGR D+KI PD +++I IHT LAEDVNL+ + G
Sbjct: 163 RPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVG 222
Query: 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
AD++ + EA L+A RE R K+T +DF+++ + V+
Sbjct: 223 ADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI 257
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 3e-41
Identities = 85/215 (39%), Positives = 115/215 (53%), Gaps = 31/215 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142
Query: 156 NSGG--EREIQRTMLELLNQL----DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209
GG ERE + LNQL DGF+ + V+ ATN
Sbjct: 143 VGGGNDERE------QTLNQLLVEMDGFEKD-------------------TAIVVMAATN 177
Query: 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 269
R + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L G
Sbjct: 178 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 237
Query: 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
AD++ + EA L+A RE R K+T +D +++ + V+
Sbjct: 238 ADLENLLNEAALLAAREGRRKITMKDLEEAADRVM 272
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-38
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 228 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287
P+E+ + I IH+ +M L +NL+++ SGA++K +CTEAG+ ALRER
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
Query: 288 RMKVTNEDFKKSKESVLYRK 307
R+ VT EDF+ + V+ +
Sbjct: 66 RVHVTQEDFEMAVAKVMQKD 85
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-37
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 231 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMK 290
P P+E+ + I IH+ +M L +NL+++ SGA++K +CTEAG+ ALRERR+
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH 60
Query: 291 VTNEDFKKSKESVLYRK 307
VT EDF+ + V+ +
Sbjct: 61 VTQEDFEMAVAKVMQKD 77
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 5e-34
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 297
+R IF S+M+LA + +L LI+ D LSGA I AI EAGL A+R+ R + D +
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 298 KSKESVLYRKKEGTPEGLY 316
++ + + Y
Sbjct: 63 EAYATQVKTDNTVDKFDFY 81
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-34
Identities = 31/76 (40%), Positives = 55/76 (72%)
Query: 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTN 293
D + KR IF+ TS+M L+E+V+L++ + D +SGADI +IC E+G++A+RE R V
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 294 EDFKKSKESVLYRKKE 309
+DF+K+ ++V+ + ++
Sbjct: 62 KDFEKAYKTVIKKDEQ 77
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-28
Identities = 27/199 (13%), Positives = 64/199 (32%), Gaps = 30/199 (15%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
+A +++ F+++ + + + + ++++F A + S V +D+I+ +
Sbjct: 83 KIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV-- 140
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
G R + LL L + + + +I T+R + L
Sbjct: 141 --PIGPRFSNLVLQALLVLLKKAPPQGRK------------------LLIIGTTSRKDVL 180
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMA---KDDLSGAD 271
+ I +P+ T ++ +D + K G
Sbjct: 181 Q-EMEMLNAFSTTIH--VPNIATGEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIK 236
Query: 272 IKAICTEAGLMALRERRMK 290
+ E L E R++
Sbjct: 237 KLLMLIEMSLQMDPEYRVR 255
|
| >3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii} Length = 85 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 2e-21
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+ VGT+ + + + +V +S G V++ FV+ D L PG V LN + VV VL +
Sbjct: 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPEL 78
Query: 61 TDPMV 65
Sbjct: 79 EHHHH 83
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-18
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTN 293
D + + IF IH+ M++ + + + + +GA+++++CTEAG+ A+R RR T
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 61
Query: 294 EDFKKSKESVL--YRKKEGTPE 313
+DF K+ + V+ Y+K T
Sbjct: 62 KDFLKAVDKVISGYKKFSSTSR 83
|
| >2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A Length = 109 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 4e-18
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+ VG + +I++D +V +S G + V+ ++++++L+PG V LN + A+V VL
Sbjct: 38 LLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTS 97
Query: 61 TDPMVTA 67
DPMV
Sbjct: 98 KDPMVYG 104
|
| >3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A Length = 251 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 5e-10
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
G L DD+ V TS G + ++ +D L+ G +V LN + V +
Sbjct: 99 SGYGVLLATHDDDTVDVFTS-GRKMRLTCSPNIDAASLKKGQTVRLNEALTVVEAGTFEA 157
Query: 61 TDPMVTAV 68
+ T
Sbjct: 158 VGEISTLR 165
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 8e-06
Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 52/222 (23%)
Query: 102 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGER 161
+ V +L+ +Y+G +E+ + ++FIDE + + + G E
Sbjct: 99 KGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAMGGVLFIDEAYYLYRPDNERDYGQE- 154
Query: 162 EIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRP 221
+E+L Q+ + D+ VI+A + P
Sbjct: 155 -----AIEILLQVMENNR--------------------DDLVVILAGYADRMENFFQSNP 189
Query: 222 G---RIDRKIEFPL--PDEKTKRRIFNIHTSRMTLAEDVNLQ-----ELIMAKDDLS-GA 270
G RI IEFP +E + + + + L + +
Sbjct: 190 GFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANAR 249
Query: 271 DIKAICTEAGL-MALR-----------ERRMKVTNEDFKKSK 300
I+ A L A R + ED + S+
Sbjct: 250 SIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRASR 291
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 51/337 (15%), Positives = 99/337 (29%), Gaps = 77/337 (22%)
Query: 29 ILSFV-DKDQLEP---GCSVLLNHKVHAVVGVLSDDTDPMVTAVANQTSATFLRVVGSEL 84
+L V + C +LL + V LS T ++ S T L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSL 306
Query: 85 IQKYLG----DGPKLAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 140
+ KYL D P+ + T+ L ++ E I+ DG V + +I+
Sbjct: 307 LLKYLDCRPQDLPREVL--TTNPRRLSIIA-ESIR----DGLATWDNWKHVNCDKLTTII 359
Query: 141 --FIDEIDAVGTKRY---------DSNSGGEREIQRTMLELL-NQLDGFDSRV-----QN 183
++ ++ ++ ++ I +L L+ + D V
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 184 RRLSEVYSSLTLIYLPG-DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF 242
L E + I +P +++ + L +++ I + + D+ +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLD 470
Query: 243 N-----I--HTSRMTLAEDVNLQELIMAKDDLS--GADIK----AICTEAGLMAL----- 284
I H + E + L ++ D I+ A ++
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 285 ------------RERRMKVTNEDFKKSKESVLYRKKE 309
ER + DF E L K
Sbjct: 529 FYKPYICDNDPKYERLVN-AILDFLPKIEENLICSKY 564
|
| >2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A Length = 153 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 19/135 (14%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
G L + +D V TS G + ++ +D D L G +V LN + V +
Sbjct: 8 SGYGVLLSVHEDKTVDVFTS-GRKMRLTCSPNIDTDTLALGQTVRLNEALTIVEAGTYEQ 66
Query: 61 TDPMVTAVANQTSATFLRVVGSELIQKYLGDGPKLAVANQTSATFLRVVGSELIQKYLGD 120
+ T +++ L DG + V + + + L +
Sbjct: 67 VGEIST------------------LREVLDDGLRALVVGHADEERIVWLAAPLAAVFADP 108
Query: 121 GPKLVRELFRVAEEH 135
++
Sbjct: 109 EADIIAYDADSPTRK 123
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 5e-04
Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 18/220 (8%)
Query: 105 FLRVVGSELIQKYLGDGPKLVRELFRVA---EEHAPSIVFIDEIDAVGTKRYDSNSGGER 161
F +VGSE+ + +++ E FR A V+ E+ + ++ GG
Sbjct: 93 FCPMVGSEVYSTEIK-KTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYG 151
Query: 162 EIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA-TNRIETLDPALIR 220
+ ++ L G ++ S S GDV I A + ++
Sbjct: 152 KTISHVIIGLKTAKG--TKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTY 209
Query: 221 PGRIDRKIE--FPLPDEKTKRRIFNIHTSRMTLAEDVNLQEL-IMAKDDLSGADIKAICT 277
D + E PLP ++ I V L +L + G DI ++
Sbjct: 210 ATEFDLEAEEYVPLPKGDVHKKKEIIQD--------VTLHDLDVANARPQGGQDILSMMG 261
Query: 278 EAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
+ E K+ E K + + E P L++
Sbjct: 262 QLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFV 301
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 100.0 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 100.0 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 100.0 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 100.0 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.98 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.98 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.97 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.97 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.97 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.95 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.95 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.89 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.83 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.83 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.81 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.78 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.77 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.77 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.75 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.75 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.74 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.73 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.73 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.72 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.72 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.72 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.7 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.7 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.69 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.69 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.67 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.66 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 99.66 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.66 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.65 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.65 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.64 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.63 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 99.63 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.63 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.62 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.62 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.62 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.62 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.62 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.59 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 99.58 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.57 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.57 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.56 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.56 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.56 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.54 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.53 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.53 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.53 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.51 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 99.47 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 99.46 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.41 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.37 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.37 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.37 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.32 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.27 | |
| 2wg5_A | 109 | General control protein GCN4, proteasome-activatin | 99.25 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.25 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.24 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.23 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.19 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.12 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.12 | |
| 3h43_A | 85 | Proteasome-activating nucleotidase; regulatory par | 99.1 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.03 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.81 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.74 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.71 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.68 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.62 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 98.57 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 98.55 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.51 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.5 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.45 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.4 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.35 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.24 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.24 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.21 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 98.21 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.13 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.01 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 97.94 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.87 | |
| 3m9b_A | 251 | Proteasome-associated ATPase; coil COIL with 5 bet | 97.8 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 97.48 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.45 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.13 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.06 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.06 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.98 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.88 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.87 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.87 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.79 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.74 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.72 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 96.65 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.59 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.55 | |
| 2wfw_A | 153 | ARC; ATP-binding protein, proteasomal atpases, PAN | 96.54 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.38 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.35 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.3 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.2 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.19 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.14 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.11 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.03 | |
| 3m9b_A | 251 | Proteasome-associated ATPase; coil COIL with 5 bet | 95.86 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.85 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.85 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.83 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 95.81 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.76 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 95.64 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 95.34 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.06 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 95.06 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.01 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.89 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 94.86 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.77 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 94.75 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.71 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.7 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.63 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 94.58 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.47 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.44 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.42 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.36 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 94.36 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 94.33 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 94.3 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 94.27 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.2 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.18 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.14 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 94.12 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.07 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.04 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 94.0 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.97 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.96 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 93.91 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.9 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 93.89 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 93.89 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 93.8 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 93.79 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.76 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 93.74 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 93.7 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 93.7 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 93.68 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 93.66 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 93.6 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.58 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 93.55 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.48 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 93.37 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 93.11 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 93.1 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.07 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 93.02 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 92.95 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 92.84 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 92.78 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 92.77 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 92.69 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 92.65 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 92.56 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 92.41 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 92.4 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 92.32 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 92.3 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 92.29 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 92.29 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.25 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 92.16 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 92.06 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 92.01 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 91.81 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 91.65 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 91.57 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 91.55 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 91.5 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 91.34 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 91.31 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 91.26 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 91.2 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 91.17 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 90.64 | |
| 3b0c_W | 76 | CENP-W, centromere protein W; histone fold, DNA bi | 90.63 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 90.45 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 90.34 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 90.22 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 90.2 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 90.15 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 90.04 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 89.94 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 89.89 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 89.84 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 89.61 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 89.36 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 89.35 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 89.08 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 89.01 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 88.87 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 88.81 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 88.75 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 88.68 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 88.55 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 88.51 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 88.49 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 88.46 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 88.43 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 88.42 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 88.29 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 88.09 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 87.89 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 87.86 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 87.58 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 87.56 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 87.52 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 87.44 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 87.38 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 87.31 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 86.86 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 86.66 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 86.48 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 86.44 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 86.05 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 86.0 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 85.8 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 85.6 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 85.33 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 84.75 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 84.67 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 84.66 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 84.63 | |
| 1fx0_A | 507 | ATP synthase alpha chain; latent ATPase, thermal s | 84.47 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 84.46 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 84.19 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 84.1 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 83.93 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 83.84 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 83.73 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 83.13 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 82.67 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 82.62 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 82.43 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 82.13 | |
| 2qe7_A | 502 | ATP synthase subunit alpha; blockage of ATP hydrol | 82.03 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 81.81 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 81.41 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 81.35 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 81.08 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 80.97 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 80.87 | |
| 3oaa_A | 513 | ATP synthase subunit alpha; rossmann fold, hydrola | 80.77 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 80.43 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 80.41 |
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-68 Score=506.10 Aligned_cols=298 Identities=70% Similarity=1.066 Sum_probs=286.6
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
+.||+|+|++|+++++|+++++++|++.+.++++++.++||++|++|.++..+++++|++.|+.+..|..+ |+++|+|
T Consensus 104 ~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~D 183 (437)
T 4b4t_I 104 LSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSD 183 (437)
T ss_dssp EEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGG
T ss_pred ceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCccee
Confidence 36899999999999999999999999999999999999999999999999999999999999999887655 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
||| ++|||||||||||+ |+|++++++|+.++++++.++|+|++++.
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ 263 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRL 263 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHH
Confidence 999 68999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++.+|..|++++||||||||+|+++++|...+.+++.+..++++++|+++|++... ++|+|
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-------------------~~ViV 324 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-------------------GDVKV 324 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-------------------SSEEE
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-------------------CCEEE
Confidence 99999999999999999999999999998777777788899999999999999877 88999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+|||+|+.|||||+||||||++|+|++|+.++|.+||+.|++++++..++|++.+|..|+||||+||+++|++|++.|+
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
++++..|+++||.+|+++++........+.+|+
T Consensus 405 r~~~~~It~eDf~~Al~rv~~~~~~e~le~lYl 437 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437 (437)
T ss_dssp HTTCSCBCHHHHHHHHHHHHHHHCCCSSSSCCC
T ss_pred HcCCCccCHHHHHHHHHHHhCCCChhhHHhhcC
Confidence 999999999999999999999888888899996
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=492.66 Aligned_cols=290 Identities=43% Similarity=0.747 Sum_probs=277.6
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
+||++.+.+++++++|+++++++|++.+.++++++.++||++|.++.++..+++++|.++++.+..+... |+++|+||
T Consensus 71 ~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dI 150 (405)
T 4b4t_J 71 YVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMV 150 (405)
T ss_dssp EEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGS
T ss_pred eEEEEEEEecCCeEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999999998876554 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|||||||||||+ |+|++++++|+.++++++.++|+|++++.+
T Consensus 151 gGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~v 230 (405)
T 4b4t_J 151 GGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMV 230 (405)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHH
Confidence 99 67899999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+++|..|++++||||||||+|+++++|.....+++.+..++++++|++|||+.+. .+|+||
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-------------------~~V~vI 291 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-------------------KNIKII 291 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-------------------CCEEEE
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-------------------CCeEEE
Confidence 9999999999999999999999999997777777788899999999999999877 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+|+.||||++||||||++|+||+|+.++|.+||+.|++++++..++|+..+|+.|+||||+||+++|++|++.|++
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
+++..|+++||++|+++++.+.++.
T Consensus 372 ~~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 372 ERRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp TTCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCcCHHHHHHHHHHHhCccccc
Confidence 9999999999999999998776553
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=479.53 Aligned_cols=289 Identities=38% Similarity=0.670 Sum_probs=276.5
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.||++.+.+++++++|+++++++|++.+.+.+++..++||+.|.++.++..+++++|+++++.+..+... |+++|+||
T Consensus 104 ~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~di 183 (437)
T 4b4t_L 104 LIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGI 183 (437)
T ss_dssp EEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGG
T ss_pred eeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHh
Confidence 6899999999999999999999999999999999999999999999999999999999999998877665 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|||||||||||+ |+|++++++|+.+++++++++|+|++++.+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~i 263 (437)
T 4b4t_L 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARII 263 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHH
Confidence 99 67999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|..|+.++||||||||+|+++++|.+.+...+.+..+++++||++|||+.+. ++|+||
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-------------------~~vivI 324 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL-------------------GQTKII 324 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-------------------TSSEEE
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC-------------------CCeEEE
Confidence 9999999999999999999999999998777777788899999999999999887 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+|+.|||||+||||||++|+||+|+.++|.+||+.|+++++...++|+..+|+.|+||||+||+++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+++..|+.+||.+|++++...++.
T Consensus 405 ~~~~~i~~~d~~~Al~~v~~~~k~ 428 (437)
T 4b4t_L 405 DDRDHINPDDLMKAVRKVAEVKKL 428 (437)
T ss_dssp TTCSSBCHHHHHHHHHHHHHTCC-
T ss_pred cCCCCCCHHHHHHHHHHHHhccCc
Confidence 999999999999999999876554
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-63 Score=475.00 Aligned_cols=296 Identities=46% Similarity=0.759 Sum_probs=278.2
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.||++.|.+|++++||+++++++|++.+.+.++++.++||+.|.++.++..++.+||.+.++.+..|... |+++|+||
T Consensus 95 ~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~di 174 (428)
T 4b4t_K 95 VIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADV 174 (428)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGS
T ss_pred eeeEEEEEccCCeeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHh
Confidence 5899999999999999999999999999999999999999999999999999999999999998887655 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|||||||||||+ |+|++++++|+.++++++.++|+|++++.+
T Consensus 175 gGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~i 254 (428)
T 4b4t_K 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMV 254 (428)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHH
Confidence 99 47999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|..|+.++||||||||+|+++++|.+...+++.+..+++++||++|||+.+. .+|+||
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~-------------------~~v~vI 315 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS-------------------TNVKVI 315 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS-------------------CSEEEE
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC-------------------CCEEEE
Confidence 9999999999999999999999999997777777778899999999999999877 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeC-CCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~-~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
+|||+|+.||||++||||||+.|+|| +|+.++|..||+.+++++++..++|++.+|..|+||||+||+++|++|++.|+
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred EecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~ 316 (317)
++++..|+++||.+|+.+++..........+|
T Consensus 396 r~~~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 396 RKNRYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp HTTCSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred HCCCCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 99999999999999999887555443334444
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-63 Score=474.82 Aligned_cols=281 Identities=42% Similarity=0.694 Sum_probs=268.9
Q ss_pred cCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeechh-------
Q psy7780 11 DDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRVVG------- 81 (317)
Q Consensus 11 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~g------- 81 (317)
++++.+|+.+++++|+|.+.+.++++.|+||++|.+|.+++.++.+||.++|+.+..|+.+ |+++|+||||
T Consensus 141 ~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~ 220 (467)
T 4b4t_H 141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEK 220 (467)
T ss_dssp CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHH
T ss_pred CCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999988765 9999999999
Q ss_pred ------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 ------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
++|||||||||||+ |+|++++++|+.+++++++++|+|++++.++.+|..|+.
T Consensus 221 L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMART 300 (467)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh
Confidence 67999999999999 999999999999999999999999999999999999999
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L 214 (317)
++||||||||+|+++.+|++.+.+......++++++|++||++... ++|+||+|||+|+.|
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-------------------~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR-------------------GNIKVMFATNRPNTL 361 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT-------------------TTEEEEEECSCTTSB
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC-------------------CcEEEEeCCCCcccC
Confidence 9999999999999999998777777788899999999999999877 889999999999999
Q ss_pred CccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Q psy7780 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNE 294 (317)
Q Consensus 215 d~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~ 294 (317)
|||++||||||++|+||+|+.++|.+||+.|++++++..+++++.+|+.|+||||+||+++|++|++.|+++++..|+++
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~ 441 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccC
Q psy7780 295 DFKKSKESVLYRKKEG 310 (317)
Q Consensus 295 d~~~al~~v~~~~~~~ 310 (317)
||.+|+++++...++.
T Consensus 442 Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 442 DFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCcccc
Confidence 9999999999876653
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-62 Score=473.01 Aligned_cols=282 Identities=46% Similarity=0.752 Sum_probs=266.9
Q ss_pred cEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeechh----------
Q psy7780 14 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRVVG---------- 81 (317)
Q Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~g---------- 81 (317)
.++|+++++++|++.+.+.++++.++||++|.+|.++..++++||.+.++.+..|... |+++|+||+|
T Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e 195 (434)
T 4b4t_M 116 AAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVE 195 (434)
T ss_dssp EEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHH
T ss_pred eEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999887665 9999999999
Q ss_pred ---------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCC
Q psy7780 82 ---------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 82 ---------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P 137 (317)
++|||||||||||+ |+|++++++|+.++++++.++|+|++++.++.+|..|+.++|
T Consensus 196 ~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 196 AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp HTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC
Confidence 67999999999999 999999999999999999999999999999999999999999
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCcc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPA 217 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~a 217 (317)
|||||||+|+++++|.+...++..+..+++.++|++||++.+. ++|+||+|||+|+.||||
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~-------------------~~ViVIaaTNrp~~LD~A 336 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD-------------------DRVKVLAATNRVDVLDPA 336 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS-------------------CSSEEEEECSSCCCCCTT
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC-------------------CCEEEEEeCCCchhcCHh
Confidence 9999999999999997766667778899999999999999887 889999999999999999
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHH
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 297 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~ 297 (317)
++||||||++|+||+|+.++|.+||+.|++++++..++++..+|+.|+||||+||+++|++|++.|+++++..|+.+||.
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~ 416 (434)
T 4b4t_M 337 LLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFV 416 (434)
T ss_dssp TCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred HhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCC
Q psy7780 298 KSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 298 ~al~~v~~~~~~~~~~~~~ 316 (317)
+|++++..+.++. -.+|
T Consensus 417 ~Al~~v~~~~~~~--i~~Y 433 (434)
T 4b4t_M 417 EGISEVQARKSKS--VSFY 433 (434)
T ss_dssp HHHHSCSSSCCCC--CCCC
T ss_pred HHHHHHhCCCCcC--cccc
Confidence 9999987665543 4566
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-47 Score=385.71 Aligned_cols=205 Identities=33% Similarity=0.587 Sum_probs=150.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|||||||||||+ |+|++++.+|+.+++++++++|+|++++.++++|+.|++.+||||||||+|+++++|+....+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC
Confidence 67999999999999 999999999999999999999999999999999999999999999999999999999654444
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.+....+++++||.+|||+.+. .+|+||+|||+||.||+|++||||||++|+||+|+.++|
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~~-------------------~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp -----CHHHHHHHHHHHSSCSS-------------------SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred CchHHHHHHHHHHHHHhCCCCC-------------------CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 4445668999999999999877 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-------------------------CCCcCH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-------------------------RMKVTN 293 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-------------------------~~~it~ 293 (317)
.+||+.++++.++..++|+..+|+.|+||||+||+++|++|++.|+++. ...|++
T Consensus 654 ~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 733 (806)
T 3cf2_A 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR 733 (806)
T ss_dssp HHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC---
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCH
Confidence 9999999999999999999999999999999999999999999999863 125899
Q ss_pred HHHHHHHHHHHh
Q psy7780 294 EDFKKSKESVLY 305 (317)
Q Consensus 294 ~d~~~al~~v~~ 305 (317)
+||++|++++..
T Consensus 734 ~df~~al~~~~p 745 (806)
T 3cf2_A 734 DHFEEAMRFARR 745 (806)
T ss_dssp -CCTTTC-----
T ss_pred HHHHHHHHhCCC
Confidence 999999998764
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=352.58 Aligned_cols=212 Identities=37% Similarity=0.597 Sum_probs=195.5
Q ss_pred CCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 72 TSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 72 ~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+.++|+||+| ++|||||||||||+ ++|++++++|+.+++++++++|
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 7799999999 57999999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
.|++++.++.+|+.|++++||||||||||+|+++|++.... ...+++.+|+.+||++.+.
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~---~~~riv~~LL~~mdg~~~~----------------- 338 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQR----------------- 338 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCT---THHHHHHHHHTHHHHCCGG-----------------
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCCh---HHHHHHHHHHHHHhccccc-----------------
Confidence 99999999999999999999999999999999998554332 3357888999999999877
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
++|+||+|||+++.||++|+|||||+++|+++.|+.++|.+||+.++++.++..++++..+|..|+||+|+||.++|+
T Consensus 339 --~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 339 --AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp --GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred --CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-----------------CCCcCHHHHHHHHHHHHh
Q psy7780 278 EAGLMALRER-----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 278 ~A~~~a~~~~-----------------~~~it~~d~~~al~~v~~ 305 (317)
+|++.|+++. ...++.+||..|++.+..
T Consensus 417 eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 417 EAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred HHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCC
Confidence 9999998763 235889999999887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=304.44 Aligned_cols=205 Identities=43% Similarity=0.687 Sum_probs=185.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++...|.|.++..++.+|..|+..+||||||||+|.++.+++....+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g 130 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc
Confidence 58999999999999 999999999999999999999999999999999999999999999999999999888544344
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..+++.+++..+|++... .+++||++||+++.||++++|||||++.|.++.|+.++|
T Consensus 131 ~~~~~~~~l~~LL~~ld~~~~~-------------------~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 131 GHDEREQTLNQLLVEMDGFDSK-------------------EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp --CHHHHHHHHHHHHHHHSCGG-------------------GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCC-------------------CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 5556678899999999988765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.+|++.++++.++..++++..++..+.|++|+||.++|++|+..|.+++...|+.+||.+|+++++.
T Consensus 192 ~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 9999999999888888999999999999999999999999999999988899999999999999874
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=288.47 Aligned_cols=202 Identities=35% Similarity=0.595 Sum_probs=174.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|.+++..++.+++.++.++|.|+.++.++.+|+.++...||++|+||+|.++..++....
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~- 124 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET- 124 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc-
Confidence 36899999999999 99999999999999999999999999999999999999999999999999999877643211
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
....+.+.+++.+|++.... ..++++++||+|+.||++++||||||+.|++++|+.++|
T Consensus 125 --~~~~~~~~~~l~~Lsgg~~~-------------------~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 125 --GASVRVVNQLLTEMDGLEAR-------------------QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp ----CTTHHHHHHHHHHTCCST-------------------TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred --hHHHHHHHHHHHhhhccccc-------------------CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 12345678999999998766 779999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCCCcCCCHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHHHH
Q psy7780 239 RRIFNIHTSR---MTLAEDVNLQELIMAK--DDLSGADIKAICTEAGLMALRER-----------RMKVTNEDFKKSKES 302 (317)
Q Consensus 239 ~~Il~~~l~~---~~~~~~~~~~~ia~~t--~g~s~~dl~~l~~~A~~~a~~~~-----------~~~it~~d~~~al~~ 302 (317)
.+||+.++++ .+...++++..++..+ +||||+||.++|++|++.|+++. ...|+++||++|+++
T Consensus 184 ~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~ 263 (274)
T 2x8a_A 184 LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKK 263 (274)
T ss_dssp HHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTT
T ss_pred HHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHH
Confidence 9999999854 4556789999999975 59999999999999999998752 347999999999998
Q ss_pred HHh
Q psy7780 303 VLY 305 (317)
Q Consensus 303 v~~ 305 (317)
+..
T Consensus 264 ~~p 266 (274)
T 2x8a_A 264 VRS 266 (274)
T ss_dssp CCC
T ss_pred hcC
Confidence 754
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=290.37 Aligned_cols=204 Identities=33% Similarity=0.593 Sum_probs=181.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|++++.++.+|+.|+...||||||||+|.+...++.....
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~ 130 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCC
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCC
Confidence 47899999999999 999999999999999999999999999999999999999999999999999999877543222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+++..++++... .+++||+|||+++.||++++|||||+..|+++.|+.++|
T Consensus 131 ~~~~~~~~~~~lL~~l~~~~~~-------------------~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 191 (301)
T 3cf0_A 131 GGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191 (301)
T ss_dssp SSCSCCHHHHHHHHHHHSSCTT-------------------SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCC-------------------CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHH
Confidence 2222345677889999987654 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-------------------------CCCcCH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-------------------------RMKVTN 293 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-------------------------~~~it~ 293 (317)
.+|++.++++.++..++++..++..+.||+|+||+++|++|++.|.++. ...|+.
T Consensus 192 ~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (301)
T 3cf0_A 192 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR 271 (301)
T ss_dssp HHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCH
T ss_pred HHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCH
Confidence 9999999999888888999999999999999999999999999887642 136899
Q ss_pred HHHHHHHHHHH
Q psy7780 294 EDFKKSKESVL 304 (317)
Q Consensus 294 ~d~~~al~~v~ 304 (317)
+||.+|++++.
T Consensus 272 ~~~~~al~~~~ 282 (301)
T 3cf0_A 272 DHFEEAMRFAR 282 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 99999998764
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=276.99 Aligned_cols=209 Identities=55% Similarity=0.904 Sum_probs=196.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.||+||||||||+ ++|++++.+++.++++++...+.|+.+..++.+|..++...|+||||||+|.+++++.+...+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~ 132 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCG
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCC
Confidence 57899999999999 999999999999999999999999999999999999999999999999999999988766666
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+.++.+..+++.++++... .+++||+|||+++.+|++++||+||+..++++.|+.++|
T Consensus 133 ~~~~~~~~l~~ll~~~~~~~~~-------------------~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 133 GDREVQRTLMQLLAEMDGFDAR-------------------GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp GGGHHHHHHHHHHHHHHTTCSS-------------------SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCC-------------------CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 6778889999999999988765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
.+|++.++++..+..+.++..++..+.|++++||.++|++|...|+++++..|+.+||.+|++++...++.
T Consensus 194 ~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 194 LEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcccc
Confidence 99999999988888888999999999999999999999999999999999999999999999999876644
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=271.72 Aligned_cols=206 Identities=36% Similarity=0.653 Sum_probs=188.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+++.++++++.+.+.|++++.++.+|+.|....|+++||||+|.+...+.....+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~ 126 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 126 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCC
Confidence 67999999999999 999999999999999999999999999999999999999999999999999999877543333
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..+.+.+++..++++... .+++||+|||+++.+|++++|||||++.++++.|+.++|
T Consensus 127 ~~~~~~~~~~~ll~~l~~~~~~-------------------~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 127 GHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSS-------------------SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred CchHHHHHHHHHHHHhhCcccC-------------------CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 4445567888999999988765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+|++.++++.++..+.++..++..+.||+++||.++|++|+..|.+++...|+.+||.+|++.+..+
T Consensus 188 ~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 188 EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 99999999988888888999999999999999999999999999999999999999999999988643
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=281.37 Aligned_cols=182 Identities=34% Similarity=0.550 Sum_probs=164.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC-CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
++||+||||||||+ ++|+++ +.+|+.++++++.++|.|++++.++.+|..|+..+|+||||||+|.+++++....
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~- 125 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE- 125 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC-
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc-
Confidence 57899999999999 999999 8999999999999999999999999999999999999999999999998875432
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
.....+++.+++.+++++... ..+++||+|||+++.||++++| ||+..++++.|+.++
T Consensus 126 --~~~~~~~~~~ll~~ld~~~~~------------------~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 126 --SEAARRIKTEFLVQMQGVGVD------------------NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHA 183 (322)
T ss_dssp --TTHHHHHHHHHHHHHHCSSSC------------------CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHH
T ss_pred --chHHHHHHHHHHHHHhccccc------------------CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHH
Confidence 233567788999999998642 1689999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 238 KRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 238 r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|.+||+.++++.+.. .+.++..+++.|.||+|+||.++|++|++.|+++
T Consensus 184 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 184 RAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999887654 5678999999999999999999999999999875
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=280.91 Aligned_cols=200 Identities=33% Similarity=0.504 Sum_probs=174.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|++++.++.+|..|+..+|+||||||+|.+.+++......
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 132 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 132 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------C
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcch
Confidence 47999999999999 999999999999999999999999999999999999999999999999999999887443322
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...++..+++..++++... ..+++||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 133 ---~~~~~~~~ll~~l~~~~~~------------------~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 133 ---ASRRIKTELLVQMNGVGND------------------SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 189 (322)
T ss_dssp ---CTHHHHHHHHHHHGGGGTS------------------CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHH
T ss_pred ---HHHHHHHHHHHHhcccccc------------------CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHH
Confidence 2345667888888887532 1679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC-----------------------------
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR----------------------------- 288 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~----------------------------- 288 (317)
.+||+.++++.+.. .+.++..++..+.||+|+||.++|++|.+.|+++..
T Consensus 190 ~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (322)
T 3eie_A 190 TTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAI 269 (322)
T ss_dssp HHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEE
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccc
Confidence 99999999887654 566889999999999999999999999999987631
Q ss_pred --------------CCcCHHHHHHHHHHHH
Q psy7780 289 --------------MKVTNEDFKKSKESVL 304 (317)
Q Consensus 289 --------------~~it~~d~~~al~~v~ 304 (317)
..|+++||.+|++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~it~~df~~al~~~~ 299 (322)
T 3eie_A 270 EMSWTDIEADELKEPDLTIKDFLKAIKSTR 299 (322)
T ss_dssp EEEGGGSCSSCBCCCCCCHHHHHHHHHHSC
T ss_pred cccccccccccccCCCCCHHHHHHHHHhcC
Confidence 3499999999998764
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=289.80 Aligned_cols=206 Identities=41% Similarity=0.660 Sum_probs=189.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+|+.++++++...+.|...+.++.+|+.++...|||+||||+|.++.+++....+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~ 145 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCC
Confidence 47999999999999 999999999999999999999999999999999999988899999999999999877543233
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..+++++++.+|++.... ..+++|++||+|+.||++++|||||++.|+++.|+.++|
T Consensus 146 ~~~e~~~~l~~LL~~Ldg~~~~-------------------~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 146 GNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp SSHHHHHHHHHHHHHGGGCCSS-------------------CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccC-------------------ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 4556678899999999998765 679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+||+.++++.++..++++..++..+.|++|+||+++|++|+..|.+++...|+.+||.+|+++++..
T Consensus 207 ~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 207 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 99999999988888889999999999999999999999999999998888899999999999998764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=258.02 Aligned_cols=199 Identities=42% Similarity=0.671 Sum_probs=176.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
++|+||||||||+ ++|++++..++.+++.++...+.++..+.++.+|+.+....|+++++||+|.++..+.......
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~ 131 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence 6899999999999 9999999999999999999888888888999999999888899999999999987764322223
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
..+..+.+.+++.++++.... ..++++++||+|+.||++++|||||++.++++.|+.++|.
T Consensus 132 ~~~~~~~~~~ll~~l~g~~~~-------------------~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 192 (254)
T 1ixz_A 132 NDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 192 (254)
T ss_dssp CHHHHHHHHHHHHHHHTCCTT-------------------CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCC-------------------CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHH
Confidence 445667888999999987655 6789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+||+.+.++.++..+.++..++..+.|++|+||.++|++|+..|.+++...|+.+||++|+
T Consensus 193 ~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 193 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 9999999888888889999999999999999999999999999999888899999999885
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=274.54 Aligned_cols=200 Identities=33% Similarity=0.497 Sum_probs=170.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|+.++.++.+|..|+...|+||||||+|.+.+.+....
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~-- 163 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-- 163 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--
Confidence 47899999999999 9999999999999999999999999999999999999999999999999999998874332
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.....++..+++..++++.... .+++||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 164 -~~~~~~~~~~ll~~l~~~~~~~------------------~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 164 -SEASRRIKTELLVQMNGVGNDS------------------QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 222 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---------------------CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred -chHHHHHHHHHHHHhhcccccC------------------CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHH
Confidence 2234566778888888875421 679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------------------------
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------------------------ 287 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------------------------ 287 (317)
.+||+.++++.+.. .+.++..++..|.||+|+||.++|++|++.|+++.
T Consensus 223 ~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
T 2qp9_X 223 TTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAI 302 (355)
T ss_dssp HHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEE
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchh
Confidence 99999999887653 56778999999999999999999999999999762
Q ss_pred -------------CCCcCHHHHHHHHHHHH
Q psy7780 288 -------------RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 -------------~~~it~~d~~~al~~v~ 304 (317)
...|+++||..|++.+.
T Consensus 303 ~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ 332 (355)
T 2qp9_X 303 EMSWTDIEADELKEPDLTIKDFLKAIKSTR 332 (355)
T ss_dssp ECCGGGSCGGGBCCCCBCHHHHHHHHHHSC
T ss_pred hcccccccccccccCCccHHHHHHHHHHcC
Confidence 13599999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=263.04 Aligned_cols=208 Identities=39% Similarity=0.586 Sum_probs=166.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+++.++++++.+.+.|.++..++.+|..+....|+||||||+|.++.++.....+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~ 120 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccC
Confidence 68999999999999 999999999999999999999999999999999999999999999999999998877432211
Q ss_pred -chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 159 -GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 159 -~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
...+.+..+.+++..+++.... .++++|+|||.++.+|++++|||||+..++++.|+.++
T Consensus 121 ~~~~~~~~~l~~ll~~~~~~~~~-------------------~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 121 FSNTEEEQTLNQLLVEMDGMGTT-------------------DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp ------CHHHHHHHHHHHTCCTT-------------------CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred ccchhHHHHHHHHHHHhhCcCCC-------------------CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 1334557788999999987654 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 238 KRRIFNIHTSRMTLAEDV--NLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~--~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
|.+|++.++++.+...+. .+..++..+.|++++||.++|++|+..|.+++...|+.+||.+|++++.....
T Consensus 182 r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 999999999877665433 34789999999999999999999999999988899999999999999886543
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=277.78 Aligned_cols=203 Identities=38% Similarity=0.598 Sum_probs=183.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
+||+||||||||+ ++|++++.+|+.++|+++.+.+.|+.+..++.+|..|...+|+||||||||.+.++++...
T Consensus 241 vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~--- 317 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc---
Confidence 7899999999999 9999999999999999999999999999999999999999999999999999998874332
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
.....++..+|+..+++.... .+++||+|||+++.||++++|+|||+..|+++.|+.++|.
T Consensus 318 ~~~~~~~~~~LL~~ld~~~~~-------------------~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~ 378 (489)
T 3hu3_A 318 GEVERRIVSQLLTLMDGLKQR-------------------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378 (489)
T ss_dssp CHHHHHHHHHHHHHHHHSCTT-------------------SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred chHHHHHHHHHHHHhhccccC-------------------CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHH
Confidence 223345667888888877655 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC-----------------CcCHHHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM-----------------KVTNEDFKKSKES 302 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~-----------------~it~~d~~~al~~ 302 (317)
+||+.++++.++..+.++..++..+.||+++||.++|++|++.|+++... .|+++||.+|+++
T Consensus 379 ~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (489)
T ss_dssp HHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTS
T ss_pred HHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHh
Confidence 99999999998888899999999999999999999999999999987532 5899999999998
Q ss_pred HHhhh
Q psy7780 303 VLYRK 307 (317)
Q Consensus 303 v~~~~ 307 (317)
+....
T Consensus 459 ~~ps~ 463 (489)
T 3hu3_A 459 SNPSA 463 (489)
T ss_dssp HHHHH
T ss_pred CCchh
Confidence 87543
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=276.58 Aligned_cols=182 Identities=35% Similarity=0.556 Sum_probs=154.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
++||+||||||||+ ++|+++ +.+|+.++++++.++|.|++++.++.+|..|+..+|+||||||+|.+++.+.....
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~ 248 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES 248 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccc
Confidence 36899999999999 999999 89999999999999999999999999999999999999999999999988754322
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
....+++.++|..++++... +.+++||+|||+++.||++++| ||+..++++.|+.++
T Consensus 249 ---~~~~~~~~~lL~~l~~~~~~------------------~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 249 ---EAARRIKTEFLVQMQGVGVD------------------NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305 (444)
T ss_dssp ---GGGHHHHHHHHTTTTCSSCC------------------CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred ---cHHHHHHHHHHHHHhCcccC------------------CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHH
Confidence 23456778999999987542 1679999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 238 KRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 238 r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|..||+.++.+.+.. .+.++..++..|.||+|+||.++|++|++.|+++
T Consensus 306 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp HHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999887653 5678999999999999999999999999999875
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=250.34 Aligned_cols=199 Identities=42% Similarity=0.671 Sum_probs=176.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
++|+||||||||+ ++|+.++..++.+++.++...+.+...+.++.+|+.+....|+++++||+|.++..+.......
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~ 155 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence 6899999999999 9999999999999999999888888888999999999988899999999999987664322223
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
..+..+.+.+++.++++.... ..++++++||+|+.||++++||+||++.|+++.|+.++|.
T Consensus 156 ~~~~~~~~~~ll~~lsgg~~~-------------------~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 216 (278)
T 1iy2_A 156 NDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 216 (278)
T ss_dssp CHHHHHHHHHHHHHHTTCCTT-------------------CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCC-------------------CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHH
Confidence 345677888999999987654 6789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+||+.++++.++..++++..++..+.|++++||+++|++|+..|.+++...|+.+||.+|+
T Consensus 217 ~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 217 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9999999888888888999999999999999999999999999998888899999999885
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-35 Score=264.34 Aligned_cols=210 Identities=40% Similarity=0.613 Sum_probs=178.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS- 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~- 157 (317)
++||+||||||||+ ++|++++.+|+.++++++.+.+.|.++..++.+|+.|....|+||||||+|.+...+...+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 125 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--------
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccC
Confidence 58999999999999 99999999999999999999999999889999999999999999999999999887632211
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
.......+.+.+++..+++.... ..+++||+|||+++.||++++|+|||+..++++.|+.++
T Consensus 126 ~~~~~~~~~~~~ll~~l~~~~~~------------------~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 126 SGNDEREQTLNQLLAEMDGFGSE------------------NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp --CCCSCSSTTTTTTTTTCSSCS------------------CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred CCchhHHHHHHHHHHHhhCcccC------------------CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 11111223556777777776543 156999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
|.+||+.++++.++..+.++..++..+.|++|+||.++|++|.+.|.+++...|+.+|+.+|++++....+.
T Consensus 188 r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 188 RVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp HHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcchh
Confidence 999999999988877888899999999999999999999999999988888899999999999887765544
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=252.13 Aligned_cols=202 Identities=32% Similarity=0.512 Sum_probs=171.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++..+|.|+.+..++.+|..++...|+||||||+|.+...+...
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--- 195 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--- 195 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---
Confidence 35789999999999 999999999999999999999999999999999999999999999999999999877432
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+++..+++..... +.+++||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~-----------------~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSS-----------------EDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR 256 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----C-----------------CCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred cchHHHHHHHHHHHHHhcccccC-----------------CCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence 22334567788899988865321 1679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------CCCcCHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------~~~it~~d~~~al~~v~~ 305 (317)
.+|++.++++.+.. .+.++..++..+.||+++||..+|++|.+.++++- ...|+.+||.+|++++..
T Consensus 257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 99999998765443 34568889999999999999999999999988753 357999999999998864
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=244.12 Aligned_cols=202 Identities=36% Similarity=0.549 Sum_probs=168.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++...+.|+++..++.+|..+....|+||||||+|.+...+......
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~ 135 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----C
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcch
Confidence 67899999999999 999999999999999999999999999999999999999999999999999999877433222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.. .+...+++..+++...... ..+++||++||+++.+|++++| ||+..++++.|+.++|
T Consensus 136 ~~---~~~~~~ll~~l~~~~~~~~----------------~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 136 AS---RRLKTEFLVEFDGLPGNPD----------------GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194 (297)
T ss_dssp CS---HHHHHHHHHHHHHCC----------------------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHH
T ss_pred HH---HHHHHHHHHHHhcccccCC----------------CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHH
Confidence 22 3455677777777654211 1569999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------CCCcCHHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------~~~it~~d~~~al~~v~ 304 (317)
..|++.++++.+.. .+.++..++..+.|++++||.++|++|++.|+++. ...|+.+||..|++++.
T Consensus 195 ~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 195 ELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 99999998765432 34567889999999999999999999999998874 25799999999987653
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=250.21 Aligned_cols=201 Identities=33% Similarity=0.506 Sum_probs=160.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++|+++...|.|+.+..++.+|..|+...|+||||||||.++..+....
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~-- 227 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE-- 227 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc--
Confidence 46899999999999 9999999999999999999999999999999999999999999999999999988764322
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.....+++.+++..+++..... +.+|+||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 228 -~~~~~~~~~~ll~~l~~~~~~~-----------------~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r 287 (389)
T 3vfd_A 228 -HDASRRLKTEFLIEFDGVQSAG-----------------DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR 287 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC----------------------CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHH
T ss_pred -chHHHHHHHHHHHHhhcccccC-----------------CCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHH
Confidence 2234566677888888765421 1679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh------------cCCCcCHHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE------------RRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~------------~~~~it~~d~~~al~~v~ 304 (317)
.+||+.++.+.... .+.++..++..+.|+++++|..+|+.|...++++ ....|+.+||..+++++.
T Consensus 288 ~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 288 LLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp HHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 99999998775433 3446788999999999999999999999999887 245799999999988653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=225.75 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=126.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHH----HhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
..||+||||||||+ ++|++++.+|++++++++.++|.|+++..++.+|..| +..+||||||||||.+++.+.+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~ 117 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 117 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCC
Confidence 47899999999999 9999999999999999999999999999999999999 5778999999999999986532
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 234 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~ 234 (317)
... .......+...|++.+|+........ ........+++||+|||+++.||++++|||||++.|++ |+
T Consensus 118 ~~~-~~~~~~~v~~~Ll~~ld~~~~~~~~~--------~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~ 186 (293)
T 3t15_A 118 TTQ-YTVNNQMVNATLMNIADNPTNVQLPG--------MYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 186 (293)
T ss_dssp -------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CC
T ss_pred Ccc-ccchHHHHHHHHHHHhcccccccccc--------ccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cC
Confidence 211 11112234455555555433110000 00000116799999999999999999999999988874 69
Q ss_pred HHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHH
Q psy7780 235 EKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 274 (317)
Q Consensus 235 ~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~ 274 (317)
.++|.+|++.++.. .+++...++..+.||++++|..
T Consensus 187 ~~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 187 REDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999999988763 4577899999999999999864
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-26 Score=225.34 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=114.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHH---HhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVA---EEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a---~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
++||+||||||||+ ++|++++ .+|+.++++++.++|.|+++. ++++|..| +...||||||||+|+++++|+
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 58999999999999 9999999 999999999999999999997 99999999 888899999999999999885
Q ss_pred CCCCCchhHH-H---------------HHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 154 DSNSGGEREI-Q---------------RTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 154 ~~~~~~~~~~-~---------------~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
....++..+. . +...+++..++ +.... +.++|++|||+++.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~-------------------~~v~i~attn~~~~ld 204 (456)
T 2c9o_A 144 ENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAG-------------------DVIYIEANSGAVKRQG 204 (456)
T ss_dssp ------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTT-------------------EEEEEETTTCCEEEEE
T ss_pred CCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCC-------------------CEEEEEcCCCCcccCC
Confidence 5432221111 1 11123555554 22211 3466669999999999
Q ss_pred ccccCCCccee--EEEeCCCC--HHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 216 PALIRPGRIDR--KIEFPLPD--EKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 216 ~al~rpgRf~~--~I~~~~P~--~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
++++||||||+ .+++|.|+ .++|.+|++.+.. .+++.++..+.| |+|+.++|..
T Consensus 205 ~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 205 RCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp EETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-----------------
T ss_pred hhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHHhh
Confidence 99999999998 66777774 5788888876552 258888999999 9999999964
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-21 Score=177.81 Aligned_cols=185 Identities=20% Similarity=0.238 Sum_probs=136.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechhhhhhh---------------------------------------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELIQKY--------------------------------------- 117 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~~~~--------------------------------------- 117 (317)
++||+||||||||+ ++|++++. +|+.+++..+...+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~ 151 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRT 151 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhccc
Confidence 57999999999999 88888875 89999887644332
Q ss_pred ----------cCCchHHHHHHHHHHHhh---------CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 118 ----------LGDGPKLVRELFRVAEEH---------APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 118 ----------~g~~~~~l~~~f~~a~~~---------~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
.|+....++..|..+... .|+||||||+|.+.. + .+..++..++...
T Consensus 152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-----------~---~~~~L~~~le~~~ 217 (368)
T 3uk6_A 152 QGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-----------E---SFSFLNRALESDM 217 (368)
T ss_dssp --CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-----------H---HHHHHHHHTTCTT
T ss_pred ccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-----------H---HHHHHHHHhhCcC
Confidence 233345666666665432 278999999998842 1 2233444443321
Q ss_pred cccccccchhhhcccccccCCCCeEEEEEc-----------CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 179 SRVQNRRLSEVYSSLTLIYLPGDVKVIMAT-----------NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT-----------N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.+++++++. |.++.+++++++ ||.. +.|++|+.+++.+|++..+.
T Consensus 218 ---------------------~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 218 ---------------------APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp ---------------------CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHH
T ss_pred ---------------------CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHH
Confidence 344444443 358889999999 9975 89999999999999998876
Q ss_pred CCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 248 RMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 248 ~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
..+.. ++..+..+++.+.+.+++++.++|+.|...|..++...|+.+|+.++++.+.
T Consensus 274 ~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 274 EEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred HcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 54332 2334677888887569999999999999999999999999999999998744
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-21 Score=175.80 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=136.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-------ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
++||+||||||||+ ++|++++ .+++.++++++.+.+.|.....++.+|..+ .++||||||+|.++..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~ 145 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRP 145 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccC
Confidence 68999999999999 7777773 389999999999999999999999999877 4689999999999876
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCccee
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGRIDR 226 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~ 226 (317)
+++ .....+... .|+..++... .++.+|++||..+ .++|+|++ ||+.
T Consensus 146 ~~~--~~~~~~~~~---~Ll~~l~~~~---------------------~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 146 DNE--RDYGQEAIE---ILLQVMENNR---------------------DDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp C-----CCTHHHHH---HHHHHHHHCT---------------------TTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred CCc--ccccHHHHH---HHHHHHhcCC---------------------CCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 532 122333444 4444444321 5688999998754 36899999 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh-------CCCCCHHHHHHHHHHHHHHHHHh----cCCCcCHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA-------KDDLSGADIKAICTEAGLMALRE----RRMKVTNE 294 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~-------t~g~s~~dl~~l~~~A~~~a~~~----~~~~it~~ 294 (317)
.++|++|+.+++.+|++.++.+.+.. ++..+..++.. ...-+++++.++++.|...+..+ ....++.+
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~ 277 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDAR 277 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 99999999999999999998765543 22224444443 22235899999999998766544 33556666
Q ss_pred HHHH
Q psy7780 295 DFKK 298 (317)
Q Consensus 295 d~~~ 298 (317)
|+..
T Consensus 278 ~l~~ 281 (309)
T 3syl_A 278 ALST 281 (309)
T ss_dssp HHHE
T ss_pred HHhh
Confidence 6543
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=168.03 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=138.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++.+. ....+..++.. ...+++|||||+|.+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-------- 120 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP-------- 120 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCH--------
Confidence 57899999999999 9999999999999997652 33444454443 24578999999998842
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
..+..+...++. .....-... ........... .++.+|++||+...++++|++ ||+..+++++|+.+++
T Consensus 121 ---~~~~~Ll~~l~~---~~~~~~~~~--~~~~~~~~~~~-~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 121 ---AIEEVLYPAMED---YRLDIIIGS--GPAAQTIKIDL-PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSEL 189 (338)
T ss_dssp ---HHHHHHHHHHHT---SCC-----------CCCCCCCC-CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHH
T ss_pred ---HHHHHHHHHHHh---ccchhhccc--CccccceecCC-CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHH
Confidence 234444444433 211000000 00000000111 258999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
..+++.++...+.. ++..+..++..+.| +++++.++++.+...|...+...|+.+++..++...
T Consensus 190 ~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 190 ALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99999988765543 23345667776555 789999999999888877778889999999888763
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-20 Score=184.21 Aligned_cols=203 Identities=19% Similarity=0.248 Sum_probs=129.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++|..++.++..++++.+.. .|+|.....+...|..|....| |+||||+|.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~ 188 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMS 188 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhh
Confidence 67899999999999 99999999999999877544 6788888889999998877776 99999999998
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
..+.+ .....++..+|.......... .........++++|+|||+++.||++|++ ||+ .|+
T Consensus 189 ~~~~~----------~~~~~LL~~ld~~~~~~~~~~------~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~ 249 (543)
T 3m6a_A 189 SDFRG----------DPSSAMLEVLDPEQNSSFSDH------YIEETFDLSKVLFIATANNLATIPGPLRD--RME-IIN 249 (543)
T ss_dssp -------------------CCGGGTCTTTTTBCCCS------SSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEE
T ss_pred hhhcc----------CHHHHHHHHHhhhhcceeecc------cCCeeecccceEEEeccCccccCCHHHHh--hcc-eee
Confidence 76421 123345666665432210000 00000001578999999999999999999 996 799
Q ss_pred eCCCCHHHHHHHHHHHhcC-----CCCC------cCCCHHHHHHhCC-CCCHHHHH----HHHHHHHHHHHHh--cCCCc
Q psy7780 230 FPLPDEKTKRRIFNIHTSR-----MTLA------EDVNLQELIMAKD-DLSGADIK----AICTEAGLMALRE--RRMKV 291 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~-----~~~~------~~~~~~~ia~~t~-g~s~~dl~----~l~~~A~~~a~~~--~~~~i 291 (317)
|+.|+.+++.+|++.++.+ ..+. ++..+..++.... ....++|+ ++|+.|+..+++. ....|
T Consensus 250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~I 329 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITV 329 (543)
T ss_dssp CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceec
Confidence 9999999999999998621 2221 1222444454333 23445555 5555555555544 34579
Q ss_pred CHHHHHHHHHHHH
Q psy7780 292 TNEDFKKSKESVL 304 (317)
Q Consensus 292 t~~d~~~al~~v~ 304 (317)
+.+|+.+++....
T Consensus 330 t~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 330 TEKNLQDFIGKRI 342 (543)
T ss_dssp CTTTTHHHHCSCC
T ss_pred CHHHHHHHhCCcc
Confidence 9999988876543
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-19 Score=163.20 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=128.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCc----hHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDG----PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~----~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
++||+||||||||+ ++|++++.+|+.+++++ .+.|.. ...++.+|+.+....+++|||||+|.+++.+..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 142 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 142 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC
Confidence 67999999999999 99999999999999876 334443 357889999998888999999999999876532
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEeCCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~-al~rpgRf~~~I~~~~P 233 (317)
. ...... .+..+...+++.... +.++++|+|||+++.+++ .+++ ||...|++|++
T Consensus 143 ~-~~~~~~---~l~~L~~~~~~~~~~------------------~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l 198 (272)
T 1d2n_A 143 G-PRFSNL---VLQALLVLLKKAPPQ------------------GRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNI 198 (272)
T ss_dssp T-TBCCHH---HHHHHHHHTTCCCST------------------TCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCE
T ss_pred C-hhHHHH---HHHHHHHHhcCccCC------------------CCCEEEEEecCChhhcchhhhhc--ccceEEcCCCc
Confidence 1 122222 333444445544322 156889999999999998 6666 99999999877
Q ss_pred CH-HHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCC----CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 234 DE-KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL----SGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 234 ~~-~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~----s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
+. ++...++... ..+ .+.++..+++.+.|+ +.+++.++++.|...+ .....++|.++++.
T Consensus 199 ~~r~~i~~i~~~~---~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 199 ATGEQLLEALELL---GNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRVRKFLALLRE 263 (272)
T ss_dssp EEHHHHHHHHHHH---TCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc---CCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHH
Confidence 65 5555555432 222 344578888888887 5777777777654322 23445555555543
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-19 Score=160.83 Aligned_cols=208 Identities=18% Similarity=0.257 Sum_probs=140.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH-----HhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA-----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a-----~~~~P~Ii~iDEiD~l~~~ 151 (317)
++||+||||||||+ ++|+.++.+++.++++++.. .|+|.. ...++.+|..+ ....++||||||+|.+...
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 131 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcc
Confidence 68999999999999 99999999999999999876 565543 45677777643 1233689999999999876
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE----cCCCCCCCccccCCCcceeE
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA----TNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t----TN~~~~Ld~al~rpgRf~~~ 227 (317)
.... +.+.....+...|+..+++..-.... . .....++++|++ ++.++.+++++++ ||+..
T Consensus 132 ~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~---------~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~ 196 (310)
T 1ofh_A 132 GEYS--GADVSREGVQRDLLPLVEGSTVSTKH---------G--MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIR 196 (310)
T ss_dssp SSCC--SSHHHHHHHHHHHHHHHHCCEEEETT---------E--EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEE
T ss_pred cccc--ccchhHHHHHHHHHHHhcCCeEeccc---------c--cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCce
Confidence 5321 22222222344555555543210000 0 001256888888 5678899999999 99989
Q ss_pred EEeCCCCHHHHHHHHHHHh-------------cCCCCC-cCCCHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHT-------------SRMTLA-EDVNLQELIMAK-------DDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l-------------~~~~~~-~~~~~~~ia~~t-------~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
++|++|+.+++.+|++... ....+. ++..++.+++.+ .+.+.+.+.++++.+...+..+
T Consensus 197 i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~ 276 (310)
T 1ofh_A 197 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 276 (310)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHH
T ss_pred EEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcC
Confidence 9999999999999998421 111111 223355566654 2568999999999877544322
Q ss_pred c-----C-CCcCHHHHHHHHHHHH
Q psy7780 287 R-----R-MKVTNEDFKKSKESVL 304 (317)
Q Consensus 287 ~-----~-~~it~~d~~~al~~v~ 304 (317)
. . ..|+.+|+.+++....
T Consensus 277 ~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 277 ASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp GGGCTTCEEEECHHHHHHHTCSSS
T ss_pred CccccCCEEEEeeHHHHHHHHhhh
Confidence 2 1 1499999999887643
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=163.82 Aligned_cols=218 Identities=17% Similarity=0.199 Sum_probs=140.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh-hcCCc-hHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK-YLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~-~~g~~-~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
.++||+||||||||+ ++|+.++.+|+.++|+++... |+|.. ...++.+|..+ ....|+||||||+|.+...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 378999999999999 999999999999999998754 77776 66788888876 4556799999999999988
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC----------CC--------
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI----------ET-------- 213 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~----------~~-------- 213 (317)
+.+...+.......+...||..|++........................++++|+++|.. ..
T Consensus 132 ~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~ 211 (363)
T 3hws_A 132 SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGA 211 (363)
T ss_dssp SSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------
T ss_pred ccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccc
Confidence 755443333333345666777777532110000000000000111122456666666642 11
Q ss_pred ---------------------------CCccccCCCcceeEEEeCCCCHHHHHHHHHH----Hhc-------CCCCC---
Q psy7780 214 ---------------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTS-------RMTLA--- 252 (317)
Q Consensus 214 ---------------------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~-------~~~~~--- 252 (317)
+.|+|++ ||+..+.|++|+.+.+.+|++. ++. .....
T Consensus 212 ~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~ 289 (363)
T 3hws_A 212 TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEF 289 (363)
T ss_dssp ------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEE
T ss_pred cccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 6888888 9999999999999999999986 221 11111
Q ss_pred cCCCHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC-------CcCHHHHHHHH
Q psy7780 253 EDVNLQELIM--AKDDLSGADIKAICTEAGLMALRERRM-------KVTNEDFKKSK 300 (317)
Q Consensus 253 ~~~~~~~ia~--~t~g~s~~dl~~l~~~A~~~a~~~~~~-------~it~~d~~~al 300 (317)
++..++.++. ....+..++|+++++++...++.+-.. .|+.+++++.+
T Consensus 290 ~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 290 RDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp CHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred CHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 2222455554 334566799999999998888765421 46666665544
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=158.39 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=136.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+|+.++++.+.. ...+...|..+ ...+++|||||+|.+...
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~------- 105 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQ------- 105 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-------
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccccc-------
Confidence 68999999999999 99999999999999876522 23333333321 145789999999987532
Q ss_pred chhHHHHHHHHHHHHhcC--CCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQLDG--FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~--~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
.+..+..+++...- +.+..... ........++.+|++||+++.+++++++ ||+..+.+++|+.+
T Consensus 106 ----~~~~L~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 106 ----AEEHLYPAMEDFVMDIVIGQGPAA--------RTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPE 171 (324)
T ss_dssp ----HHHHHHHHHHHSEEEECCSSSSSC--------CCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHH
T ss_pred ----hHHHHHHHHHhhhhHHhccccccc--------cccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHH
Confidence 24445555544210 00000000 0000001368899999999999999999 99889999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++..+++.++.+.+.. ++..+..++..+.| +++++.++++.+...|...+...|+.+++..++...
T Consensus 172 e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 9999999998765443 23346778888766 689999999988777766667789999998887654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=157.16 Aligned_cols=193 Identities=17% Similarity=0.181 Sum_probs=141.6
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---------CceEEEEechhhhh------h----------hcCCchH-HHHHHHHH
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---------SATFLRVVGSELIQ------K----------YLGDGPK-LVRELFRV 131 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~l~~------~----------~~g~~~~-~l~~~f~~ 131 (317)
++.+++||||||||+ ++++++ +..++.++|....+ . ..|.+.. .+..+++.
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 367899999999999 788877 88999999875321 1 1122232 34555555
Q ss_pred HHhh-CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 132 AEEH-APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 132 a~~~-~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
+... .|++|+|||+|.+...+ ..+..+..++..++..... .++.+|++||.
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~-------------------~~~~~I~~t~~ 176 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDR-------------------VWVSLVGITNS 176 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC------------------------CEEEEECSC
T ss_pred HhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCC-------------------ceEEEEEEECC
Confidence 5443 37899999999996542 1245677777766544211 57889999998
Q ss_pred C---CCCCccccCCCccee-EEEeCCCCHHHHHHHHHHHhcC----CCCCcCCCHHHHHHhCC---CCCHHHHHHHHHHH
Q psy7780 211 I---ETLDPALIRPGRIDR-KIEFPLPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKD---DLSGADIKAICTEA 279 (317)
Q Consensus 211 ~---~~Ld~al~rpgRf~~-~I~~~~P~~~~r~~Il~~~l~~----~~~~~~~~~~~ia~~t~---g~s~~dl~~l~~~A 279 (317)
+ +.+++++++ ||.. .++|++|+.+++.+|++.++.. ..+ ++..+..+++.+. | .++.+.++|+.|
T Consensus 177 ~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAAREHG-DARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSSSC-CHHHHHHHHHHH
T ss_pred CchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Confidence 8 779999999 9964 8999999999999999988753 222 2334566777665 5 688899999999
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 280 GLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 280 ~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
...|..++...|+.+|+.+++..+..
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 98888888889999999999988753
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-19 Score=171.86 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=55.6
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCC-chHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+++||+||||||||+ ++|.+++.+|+.++++.+.+ +|+|+ .+..++.+|+.|... +++||+|.+....
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--- 123 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA--- 123 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC------
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhccc---
Confidence 368999999999999 99999999999999999988 59995 799999999999875 4589998875432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE-cCCCCCCCccccCCCcceeEEEeCCCC
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA-TNRIETLDPALIRPGRIDRKIEFPLPD 234 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t-TN~~~~Ld~al~rpgRf~~~I~~~~P~ 234 (317)
.. ....+++.+|+.+||++.+. ..+ +++ ||+++.||+||+||||||+.|+++.|+
T Consensus 124 ~~---~~e~rvl~~LL~~~dg~~~~-------------------~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~ 179 (444)
T 1g41_A 124 ED---VAEERILDALLPPAKNQWGE-------------------VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSA 179 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hh---hHHHHHHHHHHHHhhccccc-------------------ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCC
Confidence 11 12357888999999999765 343 455 999999999999999999999999999
Q ss_pred HH-HHHHHHH
Q psy7780 235 EK-TKRRIFN 243 (317)
Q Consensus 235 ~~-~r~~Il~ 243 (317)
.. .|.+|+.
T Consensus 180 ~~~~~~ei~~ 189 (444)
T 1g41_A 180 GVSMGVEIMA 189 (444)
T ss_dssp ----------
T ss_pred Cccchhhhhc
Confidence 87 7888763
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-18 Score=164.73 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=128.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~ 154 (317)
++||+||||||||+ ++|+.++.+|+.+++.. .+...++.+|..+.. ..++||||||+|.+....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-- 122 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-- 122 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH--
Confidence 47899999999999 99999999999998753 345677888887764 357899999999985432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
+..|...++. +.+.+|++| |....++++|++ ||. ++.|++
T Consensus 123 ---------q~~LL~~le~--------------------------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~ 164 (447)
T 3pvs_A 123 ---------QDAFLPHIED--------------------------GTITFIGATTENPSFELNSALLS--RAR-VYLLKS 164 (447)
T ss_dssp -----------CCHHHHHT--------------------------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCC
T ss_pred ---------HHHHHHHHhc--------------------------CceEEEecCCCCcccccCHHHhC--cee-EEeeCC
Confidence 2233334432 456677766 555689999999 997 788999
Q ss_pred CCHHHHHHHHHHHhcCCC-------CC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh--cCCCcCHHHHHHHHHH
Q psy7780 233 PDEKTKRRIFNIHTSRMT-------LA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE--RRMKVTNEDFKKSKES 302 (317)
Q Consensus 233 P~~~~r~~Il~~~l~~~~-------~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~--~~~~it~~d~~~al~~ 302 (317)
|+.+++..+++..+.+.. .. ++..++.++..+.| +.+++.++++.|...+... +...|+.+++.+++.+
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 999999999999987521 11 22235667777665 7888999999887776422 4467999999888764
Q ss_pred H
Q psy7780 303 V 303 (317)
Q Consensus 303 v 303 (317)
.
T Consensus 244 ~ 244 (447)
T 3pvs_A 244 R 244 (447)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-18 Score=157.26 Aligned_cols=196 Identities=19% Similarity=0.189 Sum_probs=134.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEech------hhhhhhcCC-chHHHHHHHHHHHhhC---CceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGS------ELIQKYLGD-GPKLVRELFRVAEEHA---PSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s------~l~~~~~g~-~~~~l~~~f~~a~~~~---P~Ii~iDEiD~ 147 (317)
++.||+||||||||+ ++|+.++.+++.++++ ++.....-. .... |. .... .+|+||||+|.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~----~~--~~~g~l~~~vl~iDEi~~ 120 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGN----FE--VKKGPVFSNFILADEVNR 120 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTE----EE--EEECTTCSSEEEEETGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCc----eE--eccCcccccEEEEEcccc
Confidence 488999999999999 9999999999999874 232211100 0000 00 0111 37999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCC
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPG 222 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpg 222 (317)
+.+ ..+..+.+.+++-. - .........+.++++|+|+|..+ .+++++++
T Consensus 121 ~~~-----------~~~~~Ll~~l~~~~---~----------~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~-- 174 (331)
T 2r44_A 121 SPA-----------KVQSALLECMQEKQ---V----------TIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD-- 174 (331)
T ss_dssp SCH-----------HHHHHHHHHHHHSE---E----------EETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--
T ss_pred CCH-----------HHHHHHHHHHhcCc---e----------eeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--
Confidence 632 23455555555411 0 01122233456788999998654 38999999
Q ss_pred cceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----------------------cCCCHHHHHHh----------------
Q psy7780 223 RIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----------------------EDVNLQELIMA---------------- 263 (317)
Q Consensus 223 Rf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----------------------~~~~~~~ia~~---------------- 263 (317)
||+..+.++.|+.+++.+|++.+....... ++..++.++..
T Consensus 175 Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~ 254 (331)
T 2r44_A 175 RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEA 254 (331)
T ss_dssp TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHH
T ss_pred heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccc
Confidence 999899999999999999999987643211 01112223221
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 264 ---KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 264 ---t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
..|.|++.+.++++.|...|..+++..|+.+|+.+++..++.++-
T Consensus 255 ~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 255 SYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp HHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred cccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 125699999999999999998899999999999999999986653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-18 Score=163.34 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=135.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|+||||||||+ ++|+++ +.+++++++.++...+.+.........|.......|+||||||++.+..++
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~- 210 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT- 210 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-
Confidence 57899999999999 888887 889999999988665543322222223443333368999999999986532
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKI 228 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I 228 (317)
..+..+..+++.+-. . +..+||++.+.+.. +++++++ ||. ..+
T Consensus 211 --------~~q~~l~~~l~~l~~---~-------------------~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i 258 (440)
T 2z4s_A 211 --------GVQTELFHTFNELHD---S-------------------GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVA 258 (440)
T ss_dssp --------HHHHHHHHHHHHHHT---T-------------------TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCC
T ss_pred --------HHHHHHHHHHHHHHH---C-------------------CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEE
Confidence 123334344433221 1 44555555555554 8899999 996 789
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
.+++|+.++|.+|++..+...++. ++..+..++..+.| +.+++.++++.+...|...++ .|+.+++.++++...
T Consensus 259 ~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 259 KLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 999999999999999987643332 23347778888876 899999999999888876654 699999999988765
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=152.76 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=101.3
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcC-CCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TL 214 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~L 214 (317)
+++|||||+|.+... .+..|..+++.-.. +.. .......+.++.+|+|||..+ .+
T Consensus 145 ~~vl~iDEi~~l~~~-----------~~~~Ll~~le~~~~~~~~------------~g~~~~~~~~~~li~~~n~~~~~l 201 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH-----------IVDLLLDVAQSGENVVER------------DGLSIRHPARFVLVGSGNPEEGDL 201 (350)
T ss_dssp TEEEEETTGGGSCHH-----------HHHHHHHHHHHSEEEECC------------TTCCEEEECCEEEEEEECSCSCCC
T ss_pred CCEEEEeChhhCCHH-----------HHHHHHHHHhcCceEEEe------------cceEEeeCCceEEEEEeCCCCCCC
Confidence 689999999988432 34455555554100 110 011112225799999999855 89
Q ss_pred CccccCCCcceeEEEeCCC-CHHHHHHHHHHHhc-------------------------------CCCCCcCCCHHHHHH
Q psy7780 215 DPALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTS-------------------------------RMTLAEDVNLQELIM 262 (317)
Q Consensus 215 d~al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~-------------------------------~~~~~~~~~~~~ia~ 262 (317)
+++|++ ||+..+++++| +.+.+.+|++..+. ...++ +..+..++.
T Consensus 202 ~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~ 278 (350)
T 1g8p_A 202 RPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAA 278 (350)
T ss_dssp CHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHH
T ss_pred CHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHH
Confidence 999999 99988999999 68888888866321 11222 112334444
Q ss_pred hCC--C-CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 263 AKD--D-LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 263 ~t~--g-~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
... + -+.+.+.++++.|...|..+++..|+.+|+.+++..++.++-.
T Consensus 279 ~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 279 LCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 332 2 2679999999999999988888899999999999999877754
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-18 Score=173.51 Aligned_cols=191 Identities=25% Similarity=0.298 Sum_probs=140.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+.||+|+||||||+ ++|+.+ +..++.++++.+. .++.|+.+..++.+|+.+....++||||||+|
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~ 288 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIH 288 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTT
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechH
Confidence 67899999999999 777765 7789999988877 46889999999999999988888999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+.+.+.. ..+..+..+.+ ..+-.. +.+.+|++||.++ .+|++|.|
T Consensus 289 ~l~~~~~~--~~~~~~~~~~L-------~~~l~~-------------------~~~~~I~at~~~~~~~~~~~d~aL~~- 339 (758)
T 1r6b_X 289 TIIGAGAA--SGGQVDAANLI-------KPLLSS-------------------GKIRVIGSTTYQEFSNIFEKDRALAR- 339 (758)
T ss_dssp TTTTSCCS--SSCHHHHHHHH-------SSCSSS-------------------CCCEEEEEECHHHHHCCCCCTTSSGG-
T ss_pred HHhhcCCC--CcchHHHHHHH-------HHHHhC-------------------CCeEEEEEeCchHHhhhhhcCHHHHh-
Confidence 99876532 11222222222 222222 6788999998753 58899999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCC------CCCcCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHH----h
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRM------TLAEDVNLQELIMA-----KDDLSGADIKAICTEAGLMALR----E 286 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~------~~~~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~----~ 286 (317)
||+ .+.|+.|+.++|.+||+.+...+ .+. +..+..++.. +..+.|..+..++.+|+..+.. .
T Consensus 340 -Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~ 416 (758)
T 1r6b_X 340 -RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK 416 (758)
T ss_dssp -GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCC
T ss_pred -Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccc
Confidence 998 79999999999999998876542 121 1224445444 3456788899999988766554 2
Q ss_pred cCCCcCHHHHHHHHHHHH
Q psy7780 287 RRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 287 ~~~~it~~d~~~al~~v~ 304 (317)
....|+.+|+.+++....
T Consensus 417 ~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 417 RKKTVNVADIESVVARIA 434 (758)
T ss_dssp CCCSCCHHHHHHHHHHHS
T ss_pred cCCccCHHHHHHHHHHhc
Confidence 356799999999988754
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-17 Score=140.86 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=121.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHH------hhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAE------EHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~------~~~P~Ii~iDEiD~ 147 (317)
+++|+||||||||+ ++++++ +..++.++++.... ...++..+.... ...+++|+|||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 47899999999999 666654 46788888765322 223333333322 24578999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... ....+..+++. .. .++.+|++||.++.+++++.+ ||. .
T Consensus 114 l~~~-----------~~~~l~~~l~~---~~---------------------~~~~~i~~~~~~~~~~~~l~~--r~~-~ 155 (226)
T 2chg_A 114 LTAD-----------AQAALRRTMEM---YS---------------------KSCRFILSCNYVSRIIEPIQS--RCA-V 155 (226)
T ss_dssp SCHH-----------HHHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred cCHH-----------HHHHHHHHHHh---cC---------------------CCCeEEEEeCChhhcCHHHHH--hCc-e
Confidence 8532 23444445443 11 567799999999999999999 997 8
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+.+++|+.+++.++++.++.+.+.. ++..+..+++.+.| +++.+.++++.++..+ ..|+.+|+.+++.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 9999999999999999887543322 22345667777666 7777777777666543 6899999998875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-17 Score=151.77 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=129.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
.+.+|+||||||||+ ++++++ +.+++++++.++...+.+.........|.... ..+++|||||++.+..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-- 114 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-- 114 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH--
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh--
Confidence 368899999999999 888888 89999999998876655443322223333333 247899999999986432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCCcce--eEEE
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPGRID--RKIE 229 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpgRf~--~~I~ 229 (317)
..+..+..+++.+. .. +..+++++++.++ .++++|++ ||. ..++
T Consensus 115 -------~~~~~l~~~l~~~~---~~-------------------~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~ 163 (324)
T 1l8q_A 115 -------RTQIEFFHIFNTLY---LL-------------------EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVE 163 (324)
T ss_dssp -------HHHHHHHHHHHHHH---HT-------------------TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEE
T ss_pred -------HHHHHHHHHHHHHH---HC-------------------CCeEEEEecCChHHHHHhhhHhhh--cccCceEEE
Confidence 12233333433321 11 4566777777766 68999999 996 6899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---HHH-hcCCCc-CHHHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLM---ALR-ERRMKV-TNEDFKKSKESV 303 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~---a~~-~~~~~i-t~~d~~~al~~v 303 (317)
+++ +.++|.+|++.++...++. ++..+..++..+ | +.+++.++++.+... +++ .....| +.+++.+++...
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHH
Confidence 999 9999999999998754432 233367788888 4 789999998877655 111 223457 888888887653
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-17 Score=162.87 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=118.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+.||+||||||||+ ++|+.+ +.+|+.++++ .+|.|+.+..++.+|..+....|+|||||
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----- 274 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----- 274 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----
Confidence 67899999999999 888885 8889999988 77889999999999999999889999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCc
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGR 223 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgR 223 (317)
+ ....++.|..++ + . +.+.+|++||.++ .+|++++| |
T Consensus 275 ~----------~~~a~~~L~~~L---~----~-------------------g~v~vI~at~~~e~~~~~~~~~al~~--R 316 (468)
T 3pxg_A 275 A----------AIDASNILKPSL---A----R-------------------GELQCIGATTLDEYRKYIEKDAALER--R 316 (468)
T ss_dssp C------------------CCCT---T----S-------------------SSCEEEEECCTTTTHHHHTTCSHHHH--S
T ss_pred C----------chhHHHHHHHhh---c----C-------------------CCEEEEecCCHHHHHHHhhcCHHHHH--h
Confidence 1 011122222222 1 1 6789999999988 69999999 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----cCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHhc-CCCcC
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----EDVNLQELIMA-----KDDLSGADIKAICTEAGLMALRER-RMKVT 292 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~~~-~~~it 292 (317)
|. .|.|+.|+.+++.+|++.+..++... .+..+..++.. .+.+.+.....++.+|+..+..+. ...-.
T Consensus 317 f~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~ 395 (468)
T 3pxg_A 317 FQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN 395 (468)
T ss_dssp EE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred Cc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchH
Confidence 98 59999999999999999887664221 12224444444 344567788888888876554433 23344
Q ss_pred HHHHHHHHHHHH
Q psy7780 293 NEDFKKSKESVL 304 (317)
Q Consensus 293 ~~d~~~al~~v~ 304 (317)
.+++++.++++.
T Consensus 396 i~~l~~~i~~l~ 407 (468)
T 3pxg_A 396 LKELEQKLDEVR 407 (468)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555665555544
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-18 Score=142.31 Aligned_cols=129 Identities=21% Similarity=0.280 Sum_probs=97.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHh-hCCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-HAPSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~-~~P~Ii~iDEi 145 (317)
+.+|+|+||||||+ ++++++ +.+++.++++.+. ..+.|.....++.++..+.. ..|+||+|||+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~ 124 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDEL 124 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCH
Confidence 57899999999999 777775 7899999998877 34555667778888886644 55789999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIR 220 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~r 220 (317)
|.+...+.. .........+..+++. +++.+|++||.++ .+++++++
T Consensus 125 ~~l~~~~~~---~~~~~~~~~l~~~~~~--------------------------~~~~~i~~~~~~~~~~~~~~~~~l~~ 175 (195)
T 1jbk_A 125 HTMVGAGKA---DGAMDAGNMLKPALAR--------------------------GELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp GGGTT---------CCCCHHHHHHHHHT--------------------------TSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred HHHhccCcc---cchHHHHHHHHHhhcc--------------------------CCeEEEEeCCHHHHHHHHhcCHHHHH
Confidence 999866422 1122234455555432 5677999999876 78999999
Q ss_pred CCcceeEEEeCCCCHHHHHHHH
Q psy7780 221 PGRIDRKIEFPLPDEKTKRRIF 242 (317)
Q Consensus 221 pgRf~~~I~~~~P~~~~r~~Il 242 (317)
||+ .++++.|+.++|.+|+
T Consensus 176 --r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 --RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TEE-EEECCCCCHHHHHTTC
T ss_pred --Hhc-eeecCCCCHHHHHHHh
Confidence 998 6999999999999876
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=140.38 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=122.0
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
.+.+|+||||||||+ ++|+++ +..++.++++++..... ..+ .. ...|.+|+|||+|.+....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~--~~~~~vliiDe~~~~~~~~-- 120 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST----ALL----EG--LEQFDLICIDDVDAVAGHP-- 120 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG----GGG----TT--GGGSSEEEEETGGGGTTCH--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH----HHH----Hh--ccCCCEEEEeccccccCCH--
Confidence 368899999999999 666665 47889999988765431 111 11 1347899999999885432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCe-EEEEEcCCCC---CCCccccCCCcce--eEE
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDV-KVIMATNRIE---TLDPALIRPGRID--RKI 228 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v-~vI~tTN~~~---~Ld~al~rpgRf~--~~I 228 (317)
..+..+..+++... .. +.+ +|+++++.++ .+++++.+ ||. ..+
T Consensus 121 -------~~~~~l~~~l~~~~---~~-------------------~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i 169 (242)
T 3bos_A 121 -------LWEEAIFDLYNRVA---EQ-------------------KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTY 169 (242)
T ss_dssp -------HHHHHHHHHHHHHH---HH-------------------CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEE
T ss_pred -------HHHHHHHHHHHHHH---Hc-------------------CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceE
Confidence 11233444443321 11 344 4444444444 45688998 886 899
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
++++|+.+++.++++.++...+.. ++..+..+++.+.| +.+++.++++.|...|..++ ..|+.+++.++++
T Consensus 170 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 170 QLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp ECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 999999999999999988654432 22346677777766 89999999999988886555 5699999988864
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=114.82 Aligned_cols=77 Identities=40% Similarity=0.731 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 231 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 231 ~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
|+|+.++|.+||+.+++++++..++|+..+|..|+||||+||.++|++|++.|++++...|+++||.+|+++++.++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 78999999999999999999888999999999999999999999999999999999999999999999999998654
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=164.67 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=111.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+.||+||||||||+ ++|+.+ +.+++.+++ ..+|.|+.+..++.+|..+....|+|||||
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----- 274 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----- 274 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----
Confidence 67899999999999 888886 889999888 567889999999999999999999999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCc
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGR 223 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgR 223 (317)
+. ...+..+ +..++ . +.+.+|++||..+ .+|++++| |
T Consensus 275 ~~----------~~~~~~L---~~~l~----~-------------------~~v~~I~at~~~~~~~~~~~d~al~r--R 316 (758)
T 3pxi_A 275 AA----------IDASNIL---KPSLA----R-------------------GELQCIGATTLDEYRKYIEKDAALER--R 316 (758)
T ss_dssp C---------------------CCCTT----S-------------------SSCEEEEECCTTTTHHHHTTCSHHHH--S
T ss_pred Cc----------hhHHHHH---HHHHh----c-------------------CCEEEEeCCChHHHHHHhhccHHHHh--h
Confidence 10 0111222 22222 2 6789999999988 79999999 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCC-----HHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN-----LQELIMA-----KDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~-----~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|. .|.|+.|+.+++.+||+.+..+......+. +..++.. ++++.|.....++.+|+..+..+
T Consensus 317 f~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 317 FQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp EE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred Cc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 95 699999999999999998877643322222 3333332 45778888888998887655443
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-17 Score=168.45 Aligned_cols=172 Identities=18% Similarity=0.217 Sum_probs=114.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhh-CCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEi 145 (317)
+.+|+||||||||+ ++|+.+ +.+++.++++.+. .+|.|+.+..++.+|..+... .|+||||||+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi 272 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDEL 272 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 57899999999999 888876 8899999999987 578899999999999999875 6899999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC----CCCccccCC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----TLDPALIRP 221 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----~Ld~al~rp 221 (317)
|.+.+.... .+..+....+..++.. +.+.+|++||.++ .+|++++|
T Consensus 273 ~~l~~~~~~---~g~~~~~~~L~~~l~~--------------------------~~i~~I~at~~~~~~~~~~d~aL~r- 322 (854)
T 1qvr_A 273 HTVVGAGKA---EGAVDAGNMLKPALAR--------------------------GELRLIGATTLDEYREIEKDPALER- 322 (854)
T ss_dssp ----------------------HHHHHT--------------------------TCCCEEEEECHHHHHHHTTCTTTCS-
T ss_pred HHHhccCCc---cchHHHHHHHHHHHhC--------------------------CCeEEEEecCchHHhhhccCHHHHh-
Confidence 999866522 2223344555555543 6677999999875 48999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCCC----CC-cCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRMT----LA-EDVNLQELIMA-----KDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~~----~~-~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
||+. |.|+.|+.+++.+|++.++.+.. .. .+..+..++.. ++.+.+.....++.+|+..+..
T Consensus 323 -Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 323 -RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp -CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred -CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence 9985 99999999999999987765321 11 12223444443 4567888888888888766543
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-17 Score=150.16 Aligned_cols=131 Identities=7% Similarity=0.047 Sum_probs=99.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhh----------hh------cCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQ----------KY------LGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~----------~~------~g~~~~~l~~~f~~a 132 (317)
..+++||||||||+ ++++++ ++.+++++|..+.+ +. .+++...++.+|...
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~ 126 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV 126 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 46799999999999 787777 56899999876432 22 234567788899875
Q ss_pred --HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 133 --EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 133 --~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|+||+|||+|.+. . +.+|..+++.... .. .++.+|+++|.
T Consensus 127 ~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~~--~~-------------------s~~~vI~i~n~ 172 (318)
T 3te6_A 127 PKAKKRKTLILIQNPENLL-S------------EKILQYFEKWISS--KN-------------------SKLSIICVGGH 172 (318)
T ss_dssp CGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHHC--SS-------------------CCEEEEEECCS
T ss_pred hhccCCceEEEEecHHHhh-c------------chHHHHHHhcccc--cC-------------------CcEEEEEEecC
Confidence 34568999999999997 1 2466666654321 11 57899999999
Q ss_pred CCC----CCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 211 IET----LDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 211 ~~~----Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
.+. |++++++ ||. .+|.|++++.++..+|++..++.
T Consensus 173 ~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 173 NVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 865 5666777 886 68999999999999999998765
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=146.73 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=111.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhh-----CCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-----APSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-----~P~Ii~iDEiD~l~~~r~ 153 (317)
.+|++||||||||+ ++|++++.+++++++++. ....++..+..+... .+.||+|||+|.+..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--- 119 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-------KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--- 119 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-------CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-------CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---
Confidence 46889999999999 999999999999998762 244556555543332 468999999999852
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
.+.+..|..+++... .++.+|++||+++.+++++++ ||. .+.|++|
T Consensus 120 -------~~~~~~L~~~le~~~------------------------~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~ 165 (324)
T 3u61_B 120 -------AESQRHLRSFMEAYS------------------------SNCSIIITANNIDGIIKPLQS--RCR-VITFGQP 165 (324)
T ss_dssp -------HHHHHHHHHHHHHHG------------------------GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCC
T ss_pred -------HHHHHHHHHHHHhCC------------------------CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCC
Confidence 123455555555421 456799999999999999999 996 7999999
Q ss_pred CHHHHHHHHHHHhcC-------CCCC-cC-CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSR-------MTLA-ED-VNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~-------~~~~-~~-~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+.++|.+|++.+... .++. ++ ..+..++..+.| +.+++.+.++.++ ....|+.+++..++.
T Consensus 166 ~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 166 TDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG------GGTCBCC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 999987776554322 1222 22 346667777665 4445555555443 234577777766544
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-16 Score=147.14 Aligned_cols=218 Identities=17% Similarity=0.227 Sum_probs=126.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh-hhhcCCc-hHHHHHHHHHHH----hhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI-QKYLGDG-PKLVRELFRVAE----EHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~-~~~~g~~-~~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r 152 (317)
++||+||||||||+ ++|+.++.+|+.++++.+. ..|.|+. ...+..+|..+. ...++||||||+|.+...+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 153 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLS 153 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhc
Confidence 68999999999999 9999999999999999876 4566664 555666666432 3467999999999998775
Q ss_pred cCCCCCc---hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-------------------
Q psy7780 153 YDSNSGG---EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR------------------- 210 (317)
Q Consensus 153 ~~~~~~~---~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~------------------- 210 (317)
.+..... ...++..|..++ ++..-.....................++++|++||.
T Consensus 154 ~~~~~~~~~~~~~~~~~Ll~~l---e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 154 ENRSITRDVSGEGVQQALLKIV---EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp ----------CHHHHHHHHHHH---HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred CCCceecccchHHHHHHHHHHh---hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 3321111 122444444444 432100000000000000000111256778888872
Q ss_pred ----------------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH----Hhc---------CCCCC-cC
Q psy7780 211 ----------------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTS---------RMTLA-ED 254 (317)
Q Consensus 211 ----------------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~---------~~~~~-~~ 254 (317)
...+.|+|++ ||+..+.|++++.++...|+.. ++. +..+. ++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEE 308 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECH
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECH
Confidence 1135677788 9988999999999999999962 111 11111 22
Q ss_pred CCHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhcC------CCcCHHHHHHHHHHHH
Q psy7780 255 VNLQELIMAKD--DLSGADIKAICTEAGLMALRERR------MKVTNEDFKKSKESVL 304 (317)
Q Consensus 255 ~~~~~ia~~t~--g~s~~dl~~l~~~A~~~a~~~~~------~~it~~d~~~al~~v~ 304 (317)
..+..++.... ....+.+.++++.+...++.+.. ..|+.+++.++.+.+.
T Consensus 309 ~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 366 (376)
T 1um8_A 309 EAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 366 (376)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEE
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCcee
Confidence 23455655532 35789999999998887766432 2589999877655443
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-16 Score=114.73 Aligned_cols=77 Identities=39% Similarity=0.699 Sum_probs=73.3
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
-.+|+.++|.+||+.+++++++..++|++.+|+.|+||||+||.++|++|++.|+++....|+++||.+|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999988899999999999999999999999999999999999999999999999998754
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=141.06 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=134.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.+|+||||||||+ ++|+++++++...+++.+. ....+..++.. ...++|+||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~------~~~~l~~~~~~--~~~~~v~~iDE~~~l~~~------- 117 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTS--LERGDVLFIDEIHRLNKA------- 117 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------SHHHHHHHHHH--CCTTCEEEEETGGGCCHH-------
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc------CHHHHHHHHHH--ccCCCEEEEcchhhcCHH-------
Confidence 46899999999999 9999999988877765432 12334444432 224589999999988531
Q ss_pred chhHHHHHHHHHHHHhcCCC---cccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCH
Q psy7780 159 GEREIQRTMLELLNQLDGFD---SRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~---~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~ 235 (317)
.+..+...++.. +.. ......+ .. ......+.++++||++..|++++++ ||...+.+++|+.
T Consensus 118 ----~~e~L~~~~~~~-~~~i~~~~~~~~~-------~i-~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~ 182 (334)
T 1in4_A 118 ----VEELLYSAIEDF-QIDIMIGKGPSAK-------SI-RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTV 182 (334)
T ss_dssp ----HHHHHHHHHHTS-CCCC-----------------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCH
T ss_pred ----HHHHHHHHHHhc-ccceeeccCcccc-------cc-cccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCH
Confidence 233333333221 100 0000000 00 0011357788899999999999999 9988899999999
Q ss_pred HHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 236 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
+++.+|++...+..+.. ++..+..++.++.| +++++.++++.+...|..++...|+.+++.++++.+.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 99999999887654433 22336778888877 7899999999999888888888899999999998754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=141.54 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=134.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC------CceEEEEechhhhh------h----------hcCCc-hHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT------SATFLRVVGSELIQ------K----------YLGDG-PKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~------~~~~~~v~~s~l~~------~----------~~g~~-~~~l~~~f~~a~~~ 135 (317)
.++++||||||||+ ++++++ +..++.++|..... . ..|.. ......+++.....
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 126 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY 126 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 67899999999999 788877 88999999865321 1 11222 23355555555544
Q ss_pred C-CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---
Q psy7780 136 A-PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI--- 211 (317)
Q Consensus 136 ~-P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~--- 211 (317)
. |+||+|||+|.+...+. ...+..++..++... . .++.+|++||.+
T Consensus 127 ~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~~-~-------------------~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEVN-K-------------------SKISFIGITNDVKFV 176 (386)
T ss_dssp CSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSCC-C---------------------EEEEEEESCGGGG
T ss_pred CCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhcC-C-------------------CeEEEEEEECCCChH
Confidence 4 89999999999975431 124455555555431 1 578899999987
Q ss_pred CCCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcC----CCCCcCCCHHHHHHhCC---CCCHHHHHHHHHHHHHHH
Q psy7780 212 ETLDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKD---DLSGADIKAICTEAGLMA 283 (317)
Q Consensus 212 ~~Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~----~~~~~~~~~~~ia~~t~---g~s~~dl~~l~~~A~~~a 283 (317)
+.+++.+++ ||. +.+++++++.++..++++.++.. ..+. +..+..++..+. | +++.+.++|+.|...|
T Consensus 177 ~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 177 DLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAREHG-DARRALDLLRVSGEIA 252 (386)
T ss_dssp GGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred hhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 467888888 775 58999999999999999987652 1222 222455565554 5 6788888999999888
Q ss_pred HHhcCCCcCHHHHHHHHHHHH
Q psy7780 284 LRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 284 ~~~~~~~it~~d~~~al~~v~ 304 (317)
..++...|+.+|+.+++..+.
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh
Confidence 888888999999999988765
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.4e-16 Score=144.53 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=130.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----------CceEEEEechhhh-----------hhh-------cCCc-hHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----------SATFLRVVGSELI-----------QKY-------LGDG-PKLVREL 128 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----------~~~~~~v~~s~l~-----------~~~-------~g~~-~~~l~~~ 128 (317)
+++|+||||||||+ ++++++ +.+++.++|.... ... .|.. ...+..+
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 126 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKI 126 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 57899999999999 788776 8999999987643 111 1222 2335555
Q ss_pred HHHHHhhCCceEeecccccccccccCCCCCchhHHHHH-HHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE
Q psy7780 129 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRT-MLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA 207 (317)
Q Consensus 129 f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t 207 (317)
++.+....+ ||+|||+|.+...+. +.. +..++... .++.+|++
T Consensus 127 ~~~l~~~~~-vlilDEi~~l~~~~~----------~~~~l~~l~~~~-------------------------~~~~iI~~ 170 (384)
T 2qby_B 127 KNGTRNIRA-IIYLDEVDTLVKRRG----------GDIVLYQLLRSD-------------------------ANISVIMI 170 (384)
T ss_dssp HHHHSSSCE-EEEEETTHHHHHSTT----------SHHHHHHHHTSS-------------------------SCEEEEEE
T ss_pred HHHhccCCC-EEEEECHHHhccCCC----------CceeHHHHhcCC-------------------------cceEEEEE
Confidence 555554444 999999999965420 123 33443321 35779999
Q ss_pred cCCC---CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC----CCCCcCCCHHHHHHhCCC--CCHHHHHHHHHH
Q psy7780 208 TNRI---ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKDD--LSGADIKAICTE 278 (317)
Q Consensus 208 TN~~---~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~----~~~~~~~~~~~ia~~t~g--~s~~dl~~l~~~ 278 (317)
||.+ +.+++++++ ||...++|++|+.+++.+|++.++.. ..+ ++..+..+++.+.+ -+++.+.++|+.
T Consensus 171 t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9987 679999999 98779999999999999999998753 222 22335666766651 256778888998
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 279 AGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 279 A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
|...|. +...|+.+|+.++++++.
T Consensus 248 a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 248 AAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHhc--CCCccCHHHHHHHHHHHh
Confidence 887775 567899999999998875
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=142.24 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=121.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------ceEEEEechhhhhhhcCCchHHHHHHHHHHHh----------------hC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----------------HA 136 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----------------~~ 136 (317)
++||+||||||||+ ++|++++ ..++.+++++.. +...+++.+..... ..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 47899999999999 7777754 468888877631 12223332222211 13
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
+.||+|||+|.+... .+..+..++++. . .+..+|++||.++.+++
T Consensus 134 ~~vliiDE~~~l~~~-----------~~~~Ll~~le~~---~---------------------~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 134 YKIIILDEADSMTAD-----------AQSALRRTMETY---S---------------------GVTRFCLICNYVTRIID 178 (353)
T ss_dssp CEEEEETTGGGSCHH-----------HHHHHHHHHHHT---T---------------------TTEEEEEEESCGGGSCH
T ss_pred ceEEEEECCCccCHH-----------HHHHHHHHHHhc---C---------------------CCceEEEEeCchhhCcc
Confidence 459999999988532 234455555442 1 34667888999999999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC-CcCHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM-KVTNE 294 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~-~it~~ 294 (317)
++++ ||. .+.|++|+.++...+++..+.+.++. ++..+..+++.+.| +.+.+.++++.+...+-+.+.. .|+.+
T Consensus 179 ~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~ 254 (353)
T 1sxj_D 179 PLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLGDGKNITST 254 (353)
T ss_dssp HHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHH
T ss_pred hhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHH
Confidence 9999 996 89999999999999999887654432 23346778888777 5777777887777665444333 79999
Q ss_pred HHHHHHH
Q psy7780 295 DFKKSKE 301 (317)
Q Consensus 295 d~~~al~ 301 (317)
|+.+++.
T Consensus 255 ~v~~~~~ 261 (353)
T 1sxj_D 255 QVEELAG 261 (353)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9887654
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=133.02 Aligned_cols=170 Identities=18% Similarity=0.181 Sum_probs=118.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHH-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAE- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~- 133 (317)
.++++||||+|||+ +++++++. .++.++... ......++.+++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 120 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQY 120 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhh
Confidence 47899999999999 66665532 233333221 012334556665543
Q ss_pred ---hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 134 ---EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 134 ---~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
...|.+|+|||+|.+.. ..+..++..++... .++.+|++||+
T Consensus 121 ~~~~~~~~vlviDe~~~l~~--------------~~~~~l~~~l~~~~---------------------~~~~~i~~t~~ 165 (250)
T 1njg_A 121 APARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEEPP---------------------EHVKFLLATTD 165 (250)
T ss_dssp SCSSSSSEEEEEETGGGSCH--------------HHHHHHHHHHHSCC---------------------TTEEEEEEESC
T ss_pred chhcCCceEEEEECcccccH--------------HHHHHHHHHHhcCC---------------------CceEEEEEeCC
Confidence 23478999999998732 12233444444321 56889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++++++ |+ ..+++++|+.++..++++.++.+.+.. ++..+..+++.+.| +++.+.++++.|... ...
T Consensus 166 ~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~~~ 237 (250)
T 1njg_A 166 PQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----GDG 237 (250)
T ss_dssp GGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----TTS
T ss_pred hHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc----cCc
Confidence 9999999999 87 589999999999999999887654332 22346778888877 899999999877533 345
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+|+.+++
T Consensus 238 ~i~~~~v~~~~ 248 (250)
T 1njg_A 238 QVSTQAVSAML 248 (250)
T ss_dssp SBCHHHHHHHS
T ss_pred eecHHHHHHHh
Confidence 89999998875
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-16 Score=156.05 Aligned_cols=194 Identities=18% Similarity=0.138 Sum_probs=118.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC--ceEEEEec-----hhhhhhhcCCchHHHHHHHHHHHhh---CCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS--ATFLRVVG-----SELIQKYLGDGPKLVRELFRVAEEH---APSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~-----s~l~~~~~g~~~~~l~~~f~~a~~~---~P~Ii~iDEiD~ 147 (317)
+|+||+||||||||+ ++|+.++ .+|..+.+ +++++.+.+..... ...|..+... .++|+|||||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhh
Confidence 389999999999999 8888884 35665554 33443332222111 1223222222 468999999986
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcc
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRI 224 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf 224 (317)
+. ...+..|.+.+++ ..- .........+.+ ++|+|||++.. +.+++++ ||
T Consensus 121 ~~-----------~~~q~~LL~~lee---~~v----------~i~G~~~~~~~~-~iI~ATN~lpe~~~~~~aLld--RF 173 (500)
T 3nbx_X 121 AG-----------PAILNTLLTAINE---RQF----------RNGAHVEKIPMR-LLVAASNELPEADSSLEALYD--RM 173 (500)
T ss_dssp CC-----------HHHHHHHHHHHHS---SEE----------ECSSSEEECCCC-EEEEEESSCCCTTCTTHHHHT--TC
T ss_pred hc-----------HHHHHHHHHHHHH---Hhc----------cCCCCcCCcchh-hhhhccccCCCccccHHHHHH--HH
Confidence 52 2234444444442 110 011122233344 46778886322 4459999 99
Q ss_pred eeEEEeCCCCH-HHHHHHHHHHhcCC-------------------------CCCcCCCHHHHHHh---------CCCCCH
Q psy7780 225 DRKIEFPLPDE-KTKRRIFNIHTSRM-------------------------TLAEDVNLQELIMA---------KDDLSG 269 (317)
Q Consensus 225 ~~~I~~~~P~~-~~r~~Il~~~l~~~-------------------------~~~~~~~~~~ia~~---------t~g~s~ 269 (317)
...+.+|+|+. +++..|++.+.... .++++ -.+.++.. ..|.|+
T Consensus 174 ~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e~i~~l~~~lr~~r~~~~iS~ 252 (500)
T 3nbx_X 174 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFELIFMLRQQLDKLPDAPYVSD 252 (500)
T ss_dssp CEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHHHHHHHHHHHHHCSSSCCCCH
T ss_pred HHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHHHHHHHHHHhhcCCCCCccch
Confidence 99999999986 78899998764311 11111 12223222 258899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
+.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 253 R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 253 RRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred hHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 9999999999999999999999999987 544443
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-16 Score=142.01 Aligned_cols=179 Identities=18% Similarity=0.249 Sum_probs=117.6
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhh-----hhcCCchH-----HHHHHHHHHHhhCCceEeecc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQ-----KYLGDGPK-----LVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~-----~~~g~~~~-----~l~~~f~~a~~~~P~Ii~iDE 144 (317)
+++||+||||||||+ ++|+.+ +.+++.++|+.+.. ...|.... ....+.........+||||||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 367999999999999 788877 56799999987533 22221100 001222333344458999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--------------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-------------- 210 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-------------- 210 (317)
+|.+.+ ..+..|.++++.-.-..... ... .-.++++|+|||.
T Consensus 128 i~~l~~-----------~~~~~Ll~~le~~~~~~~~~------------~~~-~~~~~iiI~ttn~~~~~i~~~~~~~~~ 183 (311)
T 4fcw_A 128 IEKAHP-----------DVFNILLQMLDDGRLTDSHG------------RTV-DFRNTVIIMTSNLGSPLILEGLQKGWP 183 (311)
T ss_dssp GGGSCH-----------HHHHHHHHHHHHSEEECTTS------------CEE-ECTTEEEEEEESTTHHHHHTTTTSCCC
T ss_pred hhhcCH-----------HHHHHHHHHHhcCEEEcCCC------------CEE-ECCCcEEEEecccCHHHHHhhhccccc
Confidence 998832 34555555555421110000 000 0146889999999
Q ss_pred ------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---------CCC-cCCCHHHHHHhCC--C
Q psy7780 211 ------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---------TLA-EDVNLQELIMAKD--D 266 (317)
Q Consensus 211 ------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---------~~~-~~~~~~~ia~~t~--g 266 (317)
...++++|++ ||+..+.|++|+.+++..|++.++.+. ... ++..+..++.... .
T Consensus 184 ~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 261 (311)
T 4fcw_A 184 YERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPV 261 (311)
T ss_dssp SSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCcc
Confidence 4578899998 999999999999999999999887542 111 2223555666554 5
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy7780 267 LSGADIKAICTEAGLMALR 285 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~ 285 (317)
.+.++|+++++++...+..
T Consensus 262 gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 262 FGARPLRRVIQRELETPLA 280 (311)
T ss_dssp TBTTTHHHHHHHHTHHHHH
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 7899999999988776553
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-15 Score=111.33 Aligned_cols=76 Identities=30% Similarity=0.557 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+.++|.+||+.+++++++..++|+..+|+.|+||||+||.++|++|++.|+++....|+++||.+|++++......
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999866544
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=136.81 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=131.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhh------h---h-------cCCch-HHHHHHHHHHHh-hC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQ------K---Y-------LGDGP-KLVRELFRVAEE-HA 136 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~------~---~-------~g~~~-~~l~~~f~~a~~-~~ 136 (317)
..+++||||||||+ ++++++ +..++.++|+...+ . . .|... .....+...... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 46899999999999 777777 67899999765321 1 0 12122 222333333333 44
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---CC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---ET 213 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---~~ 213 (317)
|.||+|||+|.+. ...+..++..++...... ..++.+|++||.+ +.
T Consensus 126 ~~vlilDE~~~l~--------------~~~~~~L~~~~~~~~~~~-----------------~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 126 YMFLVLDDAFNLA--------------PDILSTFIRLGQEADKLG-----------------AFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp CEEEEEETGGGSC--------------HHHHHHHHHHTTCHHHHS-----------------SCCEEEEEEESSTHHHHT
T ss_pred eEEEEEECccccc--------------hHHHHHHHHHHHhCCCCC-----------------cCCEEEEEEECCchHHHH
Confidence 8899999999881 123334444443322100 0367899999988 67
Q ss_pred CCccccCCCccee-EEEeCCCCHHHHHHHHHHHhcCC---CCCcCCCHHHHHHhC---------CCCCHHHHHHHHHHHH
Q psy7780 214 LDPALIRPGRIDR-KIEFPLPDEKTKRRIFNIHTSRM---TLAEDVNLQELIMAK---------DDLSGADIKAICTEAG 280 (317)
Q Consensus 214 Ld~al~rpgRf~~-~I~~~~P~~~~r~~Il~~~l~~~---~~~~~~~~~~ia~~t---------~g~s~~dl~~l~~~A~ 280 (317)
+++.+.+ ||.. .+.|++++.++..++++..+... ..-++..+..+++.+ .| .++.+.++|+.|.
T Consensus 175 l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHH
T ss_pred hCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHH
Confidence 8889888 8875 89999999999999998887531 111233456677777 34 6888999999999
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 281 LMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 281 ~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
..|..++...++.+|+..++..+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh
Confidence 999888888999999999988764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-16 Score=131.33 Aligned_cols=122 Identities=24% Similarity=0.330 Sum_probs=91.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhh--hcCCchHHHHHHHHHHHhh-CCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQK--YLGDGPKLVRELFRVAEEH-APSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~--~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEi 145 (317)
+.+|+||||||||+ ++|+++ +.+++.++++.+... +.|.....++.++..+... .|++|+|||+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~ 124 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEI 124 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCH
Confidence 57899999999999 777775 789999999887642 4455566788888887765 6789999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIR 220 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~r 220 (317)
|.+.+.+.. .....++.+.+..+++. .++.+|++||.++ .+++++++
T Consensus 125 ~~l~~~~~~--~~~~~~~~~~l~~~~~~--------------------------~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 125 HTVVGAGAV--AEGALDAGNILKPMLAR--------------------------GELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp GGGSSSSSS--CTTSCCTHHHHHHHHHT--------------------------TCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred HHhcccccc--cccchHHHHHHHHHHhc--------------------------CCeeEEEecCHHHHHHHHhccHHHHH
Confidence 999866531 11123344555555433 5677999999875 68999999
Q ss_pred CCcceeEEEeCCCC
Q psy7780 221 PGRIDRKIEFPLPD 234 (317)
Q Consensus 221 pgRf~~~I~~~~P~ 234 (317)
||+ .++++.|+
T Consensus 177 --R~~-~i~i~~p~ 187 (187)
T 2p65_A 177 --RFQ-QILVEQPS 187 (187)
T ss_dssp --HEE-EEECCSCC
T ss_pred --hcC-cccCCCCC
Confidence 998 59999985
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=136.15 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=112.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHH-H-hhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVA-E-EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a-~-~~~P~Ii~iDEiD~l~~~ 151 (317)
++||+||||||||+ ++|+++ +.+++.+++++..+ .......+....... . ...+.||+|||+|.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH
Confidence 57999999999999 777765 45688888876422 111122222221110 0 134789999999988431
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeC
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 231 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~ 231 (317)
....++..++... .++.+|++||.++.+++++++ ||. .+.|+
T Consensus 118 --------------~~~~L~~~le~~~---------------------~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~ 159 (319)
T 2chq_A 118 --------------AQAALRRTMEMYS---------------------KSCRFILSCNYVSRIIEPIQS--RCA-VFRFK 159 (319)
T ss_dssp --------------HHHTTGGGTSSSS---------------------SSEEEEEEESCGGGSCHHHHT--TCE-EEECC
T ss_pred --------------HHHHHHHHHHhcC---------------------CCCeEEEEeCChhhcchHHHh--hCe-EEEec
Confidence 1223333443321 568899999999999999999 996 89999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 299 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~a 299 (317)
+|+.+++.++++.++.+.+.. ++..+..++..+.| +.+.+.++++.+... ...++.+++.++
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~ 222 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI-----GEVVDADTIYQI 222 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS-----SSCBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHH
Confidence 999999999999988765443 22345667766655 566666666654432 235666666543
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-15 Score=151.96 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=118.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.||+||||||||+ ++|+.+ +.+|++++|+++...+... ...++...+...++||||||||.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~------ 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH------ 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC------
Confidence 48999999999999 888886 6899999999998876654 2233444555667999999999873
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC------------CCccccCCCc
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET------------LDPALIRPGR 223 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~------------Ld~al~rpgR 223 (317)
.+++..|.++++.-. +... .+ ......++++|+|||.+.. ++|+|++ |
T Consensus 593 -----~~~~~~Ll~~le~g~-~~~~-~g-----------~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--R 652 (758)
T 3pxi_A 593 -----PDVFNILLQVLEDGR-LTDS-KG-----------RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--R 652 (758)
T ss_dssp -----HHHHHHHHHHHHHSB-CC-----------------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--T
T ss_pred -----HHHHHHHHHHhccCe-EEcC-CC-----------CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--h
Confidence 234556666665411 1100 00 0011257899999997654 7889998 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMA--KDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~--t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
|+..|.|++|+.+++.+|++.++... ... ++..++.++.. ...+..++|+++++++...++.
T Consensus 653 l~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 653 IDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp SSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHH
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999998877542 111 22234555553 3356788999999887665543
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-15 Score=147.66 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=111.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCch-------HHHHHHHHHH-----HhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGP-------KLVRELFRVA-----EEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~-------~~l~~~f~~a-----~~~~P~Ii~iDEiD 146 (317)
+.||+||||||||+ ++|++++.+++.++++++...+..+.. ..+..+|..+ ....++||||||+|
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid 158 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 158 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCC
Confidence 68999999999999 999999999999999876543221110 0133344444 23567899999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+.... ......+..+++. .. ..+++|+++.....++ .++| |+ .
T Consensus 159 ~l~~~~--------~~~l~~L~~~l~~---~~---------------------~~iIli~~~~~~~~l~-~l~~--r~-~ 202 (516)
T 1sxj_A 159 GMSGGD--------RGGVGQLAQFCRK---TS---------------------TPLILICNERNLPKMR-PFDR--VC-L 202 (516)
T ss_dssp GCCTTS--------TTHHHHHHHHHHH---CS---------------------SCEEEEESCTTSSTTG-GGTT--TS-E
T ss_pred ccchhh--------HHHHHHHHHHHHh---cC---------------------CCEEEEEcCCCCccch-hhHh--ce-E
Confidence 997532 1122344444443 11 3344444433334454 4555 54 5
Q ss_pred EEEeCCCCHHHHHHHHHHHhcC--CCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSR--MTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~--~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
.+.|++|+.+++.++++..+.+ ..++ +..+..+++.+.| |++.+++.....+. ....|+.+++.+++..
T Consensus 203 ~i~f~~~~~~~~~~~L~~i~~~~~~~i~-~~~l~~la~~s~G----diR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 203 DIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDRLIQTTRG----DIRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCCC-TTHHHHHHHHTTT----CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC----cHHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 8999999999999999877643 3333 3347888888755 44444443322222 3456888888776654
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=133.13 Aligned_cols=170 Identities=13% Similarity=0.147 Sum_probs=118.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHH-------hhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAE-------EHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~-------~~~P~Ii~iDEiD 146 (317)
+++|+||||+|||+ ++|+++ +..++.+++++. .+...++++++... ...+.||+|||+|
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD------RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 117 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC------CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc------cChHHHHHHHHHHHhccccCCCCCceEEEEECcc
Confidence 37899999999999 777765 456888887652 12445666666554 2337899999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+... ....|..++++ .. .++.+|++||.++.+++++++ |+.
T Consensus 118 ~l~~~-----------~~~~L~~~le~---~~---------------------~~~~~il~~~~~~~l~~~l~s--r~~- 159 (323)
T 1sxj_B 118 SMTAG-----------AQQALRRTMEL---YS---------------------NSTRFAFACNQSNKIIEPLQS--QCA- 159 (323)
T ss_dssp GSCHH-----------HHHTTHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred cCCHH-----------HHHHHHHHHhc---cC---------------------CCceEEEEeCChhhchhHHHh--hce-
Confidence 88432 23344444443 11 557788899999999999999 886
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
.+.|++|+.+++.++++..+.+.+.. ++..+..+++.+.| +++.+.++++.+... ...++.+++.+++.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----HSSBCHHHHHHHHT
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----CCCcCHHHHHHHHC
Confidence 89999999999999999887543322 22345677777766 566666666655422 14588888876654
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-15 Score=150.18 Aligned_cols=195 Identities=17% Similarity=0.116 Sum_probs=126.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEE----echhhhhh-----hcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRV----VGSELIQK-----YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v----~~s~l~~~-----~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
++||+||||||||+ ++|+.++..++.. +++.+... ..|..... ...+..| ..+|+||||+|.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~ 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMR 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccccc-CCeeEec---CCCcEEeehhhhCC
Confidence 68999999999999 8898887766552 22222221 11111100 0112223 34799999999874
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------------CCCc
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------TLDP 216 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------~Ld~ 216 (317)
+. .+..|.+.+++ -.-.. ........++.++.||+|||+++ .|++
T Consensus 405 ~~-----------~q~~Ll~~le~---~~i~i--------~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~ 462 (595)
T 3f9v_A 405 DE-----------DRVAIHEAMEQ---QTVSI--------AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPP 462 (595)
T ss_dssp SH-----------HHHHHHHHHHS---SSEEE--------ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCS
T ss_pred Hh-----------HhhhhHHHHhC---CEEEE--------ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCH
Confidence 32 34455555543 11100 00111233447889999999987 8999
Q ss_pred cccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCCC--------------------------CCcCCCHHHHHHh------
Q psy7780 217 ALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRMT--------------------------LAEDVNLQELIMA------ 263 (317)
Q Consensus 217 al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~~--------------------------~~~~~~~~~ia~~------ 263 (317)
+|++ ||| ..+..+.|+.+ ...|.+..+.... .-++...+.+.+.
T Consensus 463 aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~ 539 (595)
T 3f9v_A 463 TILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRK 539 (595)
T ss_dssp SSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSC
T ss_pred HHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 998 45666778877 8888877665321 0111223333333
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 264 --------KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 264 --------t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+.|++.+.++++.|...|..+.+..|+.+|+.+|++-+..
T Consensus 540 ~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 540 KSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp SCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred hhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 347899999999999999998899999999999999986654
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=132.10 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=106.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhhcCCchHHHHHHHHH-HH-----hhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRV-AE-----EHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~-a~-----~~~P~Ii~iDEiD~ 147 (317)
++||+||||||||+ ++|+++. ..++.+++++.... ..++..+.. +. ...+.+|+|||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 57999999999999 7777652 45888888764321 122222222 11 13478999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... .+..+..+++. .. .++.+|++||.++.+++++.+ ||. .
T Consensus 122 l~~~-----------~~~~L~~~le~---~~---------------------~~~~~i~~~~~~~~l~~~l~s--r~~-~ 163 (327)
T 1iqp_A 122 LTQD-----------AQQALRRTMEM---FS---------------------SNVRFILSCNYSSKIIEPIQS--RCA-I 163 (327)
T ss_dssp SCHH-----------HHHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHH--TEE-E
T ss_pred CCHH-----------HHHHHHHHHHh---cC---------------------CCCeEEEEeCCccccCHHHHh--hCc-E
Confidence 8432 23445455543 11 567789999999999999999 987 8
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
+.|++|+.++...+++..+.+.+.. ++..+..++..+.| +++.+.++++.+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999999999999999887655443 23345667777666 6777777776554
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-15 Score=150.71 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=119.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+.||+||||||||+ ++|+.++.+|+.++++++..+ |+|..+. ..+....+...++||||||+|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIE 567 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcc
Confidence 57999999999999 999999999999999987653 3322111 223444555667999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--------------
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------- 212 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------- 212 (317)
.+. .+++..|.++++. +.-.... ..... ..++++|+|||...
T Consensus 568 ~~~-----------~~~~~~Ll~~le~--~~~~~~~----------g~~~~-~~~~~iI~tsN~~~~~~~~~~~g~~~~~ 623 (758)
T 1r6b_X 568 KAH-----------PDVFNILLQVMDN--GTLTDNN----------GRKAD-FRNVVLVMTTNAGVRETERKSIGLIHQD 623 (758)
T ss_dssp GSC-----------HHHHHHHHHHHHH--SEEEETT----------TEEEE-CTTEEEEEEECSSCC-------------
T ss_pred ccC-----------HHHHHHHHHHhcC--cEEEcCC----------CCEEe-cCCeEEEEecCcchhhhhhcccCccccc
Confidence 863 2345555555553 1100000 00000 15788999999854
Q ss_pred -----------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---------CCC-cCCCHHHHHHh--CCCCCH
Q psy7780 213 -----------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---------TLA-EDVNLQELIMA--KDDLSG 269 (317)
Q Consensus 213 -----------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---------~~~-~~~~~~~ia~~--t~g~s~ 269 (317)
.++|+|++ ||+..|.|++|+.+++..|++.++.+. .+. ++..+..+++. ...+..
T Consensus 624 ~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~ 701 (758)
T 1r6b_X 624 NSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGA 701 (758)
T ss_dssp ----CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBT
T ss_pred hHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCc
Confidence 67899999 999999999999999999999887632 111 12224455554 345678
Q ss_pred HHHHHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMAL 284 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~ 284 (317)
+++.++++.+...++
T Consensus 702 R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 702 RPMARVIQDNLKKPL 716 (758)
T ss_dssp TTHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999988776544
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=132.83 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=116.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++ .++.++++. ......++.+++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 113 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQY 113 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhh
Confidence 46899999999999 77776643 233443321 1123356777776653
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
..+.||+|||+|.+... ... .++..++... .++++|++||.
T Consensus 114 ~~~~~~~~vliiDe~~~l~~~-----------~~~---~Ll~~le~~~---------------------~~~~~Il~~~~ 158 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRH-----------SFN---ALLKTLEEPP---------------------EHVKFLLATTD 158 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHH-----------HHH---HHHHHHHSCC---------------------SSEEEEEEESC
T ss_pred ccccCCeEEEEEECcchhcHH-----------HHH---HHHHHHhcCC---------------------CceEEEEEeCC
Confidence 23679999999988321 223 3444444321 56889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++++++ |+ ..+.|++|+.++..++++.++++.+.. ++..+..++..+.| +++++.++++.+...+ ..
T Consensus 159 ~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~~----~~ 230 (373)
T 1jr3_A 159 PQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG----DG 230 (373)
T ss_dssp GGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHHT----TT
T ss_pred hHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc----CC
Confidence 9999999999 88 589999999999999999887654332 22235678888877 7888988888775432 34
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++.++
T Consensus 231 ~i~~~~v~~~ 240 (373)
T 1jr3_A 231 QVSTQAVSAM 240 (373)
T ss_dssp CBCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 5787777655
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=9e-14 Score=103.22 Aligned_cols=75 Identities=41% Similarity=0.747 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
+.++|.+||+.+++++++..++|+..+|..|+||||+||.++|++|++.|+++....|+++||..|++++...-.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 689999999999999998889999999999999999999999999999999999999999999999999875544
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-14 Score=107.21 Aligned_cols=81 Identities=33% Similarity=0.489 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccCCCCCC
Q psy7780 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGL 315 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~~~~~~ 315 (317)
++|.+||+.+++++++..++|+..+|..|+||||+||.++|++|++.|+++++..|+++||..|++++..+..+.....+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDF 80 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHh
Confidence 47999999999999888899999999999999999999999999999999999999999999999999765554444555
Q ss_pred C
Q psy7780 316 Y 316 (317)
Q Consensus 316 ~ 316 (317)
|
T Consensus 81 y 81 (82)
T 2dzn_B 81 Y 81 (82)
T ss_dssp -
T ss_pred h
Confidence 5
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.1e-14 Score=144.46 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=114.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
+++||+||||||||+ ++|+.+ +.+|+.++|+++... |+|..+ ...+....+...++||||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~l 666 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILF 666 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEE
Confidence 367999999999999 888888 789999999876543 223222 123344444555689999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc-cccccchhhhcccccccCCCCeEEEEEcCCC----------
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-VQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---------- 211 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---------- 211 (317)
||+|.+. .+++..|.+++ +.-.-. ..+. +.. -.++++|+|||..
T Consensus 667 DEi~~l~-----------~~~~~~Ll~~l---~~~~~~~~~g~----------~vd-~~~~iiI~tsn~~~~~~~~~~~~ 721 (854)
T 1qvr_A 667 DEIEKAH-----------PDVFNILLQIL---DDGRLTDSHGR----------TVD-FRNTVIILTSNLGSPLILEGLQK 721 (854)
T ss_dssp SSGGGSC-----------HHHHHHHHHHH---TTTEECCSSSC----------CEE-CTTEEEEEECCTTHHHHHHHHHT
T ss_pred ecccccC-----------HHHHHHHHHHh---ccCceECCCCC----------Eec-cCCeEEEEecCcChHHHhhhccc
Confidence 9999763 23344444444 422100 0000 000 0478899999972
Q ss_pred ----------------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---------CCC-cCCCHHHHHHhCC
Q psy7780 212 ----------------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---------TLA-EDVNLQELIMAKD 265 (317)
Q Consensus 212 ----------------~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---------~~~-~~~~~~~ia~~t~ 265 (317)
..+.|+|+. ||+..+.|++|+.+++..|++.++.+. .+. ++..+..++....
T Consensus 722 ~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 722 GWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp TCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCC
Confidence 346778888 999999999999999999998887632 111 2223455666544
Q ss_pred --CCCHHHHHHHHHHHHHHHHH
Q psy7780 266 --DLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 266 --g~s~~dl~~l~~~A~~~a~~ 285 (317)
.++.++|+++++++...++.
T Consensus 800 ~~~gn~R~L~~~i~~~~~~~~~ 821 (854)
T 1qvr_A 800 DPVFGARPLRRVIQRELETPLA 821 (854)
T ss_dssp BTTTBTSTHHHHHHHHTHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHH
Confidence 56889999999988776654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=121.78 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=79.6
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
.|.||+|||++.+-. ..+..+..++++. . .+..+|.+||.++.+.
T Consensus 134 ~~~vlilDE~~~L~~-----------~~~~~L~~~le~~---~---------------------~~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 134 RYKCVIINEANSLTK-----------DAQAALRRTMEKY---S---------------------KNIRLIMVCDSMSPII 178 (354)
T ss_dssp CCEEEEEECTTSSCH-----------HHHHHHHHHHHHS---T---------------------TTEEEEEEESCSCSSC
T ss_pred CCeEEEEeCccccCH-----------HHHHHHHHHHHhh---c---------------------CCCEEEEEeCCHHHHH
Confidence 567999999998521 2244455555542 1 4567999999999999
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-c-CCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-E-DVNLQELIMAKDDLSGADIKAICTEAGLM 282 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~-~~~~~~ia~~t~g~s~~dl~~l~~~A~~~ 282 (317)
+++++ || ..+.|++|+.+++.++++..+.+.++. + +..+..+++.+.| +.+++.++++.+...
T Consensus 179 ~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 179 APIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 99999 99 689999999999999999887654433 2 3446778887766 677777777766554
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-13 Score=125.30 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=107.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhhcCCchHHHHHHHHHHHh------hCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE------HAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~------~~P~Ii~iDEiD~ 147 (317)
+++|+||||||||+ ++|+.+. ..+..+++++. .+...+++.+....+ ..+.|++|||+|.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~ 121 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADA 121 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCC
Confidence 37899999999999 7777752 35777776642 123344444433321 1257999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... .+..|..++++ .. ....+|++||.++.+.+++++ ||. .
T Consensus 122 l~~~-----------~~~~L~~~le~---~~---------------------~~~~~il~~n~~~~i~~~i~s--R~~-~ 163 (340)
T 1sxj_C 122 MTNA-----------AQNALRRVIER---YT---------------------KNTRFCVLANYAHKLTPALLS--QCT-R 163 (340)
T ss_dssp SCHH-----------HHHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred CCHH-----------HHHHHHHHHhc---CC---------------------CCeEEEEEecCccccchhHHh--hce-e
Confidence 8422 23445455544 21 456688889999999999999 996 7
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 299 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~a 299 (317)
+.|++++.++..+++...+....+. ++.....++..+.| ..+.+.++++.+...+...+...++.+++.++
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 8999999999999998887443322 12234556665544 34444444443322221111235777766544
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=117.22 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=106.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEechhhhhh-----hcCCchHH-------HHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELIQK-----YLGDGPKL-------VRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~~~-----~~g~~~~~-------l~~~f~~a~~~~P~Ii~i 142 (317)
+++||+|+||||||+ ++++.+. .+|+.++|+.+... ..|..... ....|..+ .+++|||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~l 106 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFL 106 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEEE
Confidence 478999999999999 7887764 68999999875321 12211100 01122222 3579999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld 215 (317)
||+|.+.. +.+..|..+++.-. +.... .....+.++.+|+|||.+ ..++
T Consensus 107 DEi~~l~~-----------~~q~~Ll~~l~~~~-~~~~g------------~~~~~~~~~~iI~atn~~~~~~~~~~~~~ 162 (265)
T 2bjv_A 107 DELATAPM-----------MVQEKLLRVIEYGE-LERVG------------GSQPLQVNVRLVCATNADLPAMVNEGTFR 162 (265)
T ss_dssp ESGGGSCH-----------HHHHHHHHHHHHCE-ECCCC------------C--CEECCCEEEEEESSCHHHHHHHTSSC
T ss_pred echHhcCH-----------HHHHHHHHHHHhCC-eecCC------------CcccccCCeEEEEecCcCHHHHHHcCCcc
Confidence 99998843 23455555555421 10000 000011568899999984 2478
Q ss_pred ccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhcC----CCCCc--CCC---HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPDE--KTKRRIFNIHTSR----MTLAE--DVN---LQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~~--~~r~~Il~~~l~~----~~~~~--~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
++|.+ ||. ..|.+|+.+. ++...+++.++++ ..... ..+ +..+....-.-+.+++.++++.+...+
T Consensus 163 ~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 163 ADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 89998 996 4567776643 5566666555432 22211 222 233433332336778889998877654
Q ss_pred HHhcCCCcCHHHH
Q psy7780 284 LRERRMKVTNEDF 296 (317)
Q Consensus 284 ~~~~~~~it~~d~ 296 (317)
....|+.+|+
T Consensus 241 ---~~~~i~~~~l 250 (265)
T 2bjv_A 241 ---GTSDYPLDDI 250 (265)
T ss_dssp ---CCSSSCBCCC
T ss_pred ---CCCcCcHHHc
Confidence 2345665555
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-12 Score=118.29 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=124.7
Q ss_pred hHHH--hhhcCCCchh---hhhhcC---------CceEEEEechh------hhhh---hc-------CCch-HHHHHHHH
Q psy7780 82 SELI--QKYLGDGPKL---AVANQT---------SATFLRVVGSE------LIQK---YL-------GDGP-KLVRELFR 130 (317)
Q Consensus 82 ~~Ll--~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~------l~~~---~~-------g~~~-~~l~~~f~ 130 (317)
..++ +|+||+|||+ ++++++ +..++.++|.. +... .. |... ..+..+.+
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 131 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD 131 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 5678 9999999999 666654 56788888743 1111 11 1111 22333333
Q ss_pred HHH-hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 131 VAE-EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 131 ~a~-~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
... ...|.+|+|||+|.+...+. ... ..+..++..++...... ...++.+|++||
T Consensus 132 ~l~~~~~~~llvlDe~~~l~~~~~-----~~~---~~l~~l~~~~~~~~~~~----------------~~~~v~lI~~~~ 187 (412)
T 1w5s_A 132 NLYVENHYLLVILDEFQSMLSSPR-----IAA---EDLYTLLRVHEEIPSRD----------------GVNRIGFLLVAS 187 (412)
T ss_dssp HHHHHTCEEEEEEESTHHHHSCTT-----SCH---HHHHHHHTHHHHSCCTT----------------SCCBEEEEEEEE
T ss_pred HHHhcCCeEEEEEeCHHHHhhccC-----cch---HHHHHHHHHHHhcccCC----------------CCceEEEEEEec
Confidence 332 24588999999999865320 112 23333333333221000 004688998988
Q ss_pred CCC---CCC---ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC---CCcCCCHHHHHHhCC------CCCHHHHHH
Q psy7780 210 RIE---TLD---PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT---LAEDVNLQELIMAKD------DLSGADIKA 274 (317)
Q Consensus 210 ~~~---~Ld---~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~---~~~~~~~~~ia~~t~------g~s~~dl~~ 274 (317)
.++ .++ +.+.+ ||...+.+++++.++..++++..+.... ..++..+..++..+. | .++.+..
T Consensus 188 ~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~ 264 (412)
T 1w5s_A 188 DVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIV 264 (412)
T ss_dssp ETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHH
T ss_pred cccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHH
Confidence 765 344 66777 6666699999999999999987754211 112223566777777 6 6888999
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 275 ICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 275 l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
++..|...|..++...++.+++..++....
T Consensus 265 l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 265 ALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 999998888888888899999988887643
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=137.31 Aligned_cols=141 Identities=15% Similarity=0.236 Sum_probs=97.3
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHH---------------hhCCceEee
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE---------------EHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~---------------~~~P~Ii~i 142 (317)
|+||+||||||||+ ++++..+..++.++++...+ ...+...++..- ...++||||
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 88999999999999 57777788999999876432 344555554331 122479999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCcc
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPA 217 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~a 217 (317)
||+|.....+. +.......+.++++. .++..... ...... .++.+|+|||++. .|+++
T Consensus 1343 DEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~----------~~~~~~-~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1343 DEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPE----------NKWVTI-ERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp ETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTT----------CCEEEE-ESEEEEEEECCTTSTTCCCCCHH
T ss_pred ccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCC----------CcEEEe-cCEEEEEecCCCccCCCccCChh
Confidence 99997443332 222345566666642 33322100 000001 4689999999995 79999
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
++| || ..++++.|+.+++..|++.+++.
T Consensus 1406 llR--rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1406 FTR--HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHT--TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred hhh--ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 999 99 68999999999999999988753
|
| >2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-12 Score=97.87 Aligned_cols=69 Identities=32% Similarity=0.617 Sum_probs=56.0
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhcc
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVAN 70 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~ 70 (317)
.||+|.|++++++++|+++++++|++.+.++++++.|+||++|++|.+++.++++||.++|+.++.|+.
T Consensus 39 ~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~v 107 (109)
T 2wg5_A 39 LVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEV 107 (109)
T ss_dssp EEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC------------
T ss_pred eEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEe
Confidence 699999999999999999999999999999999999999999999999999999999999999998865
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-12 Score=120.72 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=101.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCCch-------HHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGDGP-------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~~~-------~~l~~~f~~a~~~~P~Ii~i 142 (317)
.++||+|+||||||+ ++++.. +.+|+.++|+.+... ..|... ......|+.|. +++|||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~L 102 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD---GGTLFL 102 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT---TSEEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC---CCEEEE
Confidence 378999999999999 777744 679999999875331 122110 01223455443 479999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld 215 (317)
||||.+.. ..+..|..+++... +... ......+.++.+|+|||+. ..++
T Consensus 103 DEi~~l~~-----------~~q~~Ll~~l~~~~-~~~~------------g~~~~~~~~~riI~atn~~l~~~v~~g~fr 158 (304)
T 1ojl_A 103 DEIGDISP-----------LMQVRLLRAIQERE-VQRV------------GSNQTISVDVRLIAATHRDLAEEVSAGRFR 158 (304)
T ss_dssp ESCTTCCH-----------HHHHHHHHHHHSSB-CCBT------------TBCCCCBCCCEEEEEESSCHHHHHHHTSSC
T ss_pred eccccCCH-----------HHHHHHHHHHhcCE-eeec------------CCcccccCCeEEEEecCccHHHHHHhCCcH
Confidence 99998843 23444555554321 1100 0001112568899999985 2356
Q ss_pred ccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC----cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA----EDVNLQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~----~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
+.|.. ||. ..|.+|++. .++...+++.++.+. +.. ++..+..+....-.-+.+++.++++.|...+
T Consensus 159 ~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 159 QDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 77777 874 446666665 455666776665432 111 1122344444442236788889998887654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=124.32 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=94.1
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC--CC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI--ET 213 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~--~~ 213 (317)
.+.++||||++.+. ...+..|..+|+.-. +........ .....+.....|.++.||+|||+. +.
T Consensus 201 ~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~-~~~~g~~~~--~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 201 HKGVLFIDEIATLS-----------LKMQQSLLTAMQEKK-FPITGQSEM--SSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp TTSEEEETTGGGSC-----------HHHHHHHHHHHHHSE-ECCBCSCTT--SGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred CCCEEEEechhhCC-----------HHHHHHHHHHHHcCc-EEecccccc--cccccCCCCccceeEEEEEecCHHHHhh
Confidence 46799999999873 234555666655311 000000000 000111123334688999999986 67
Q ss_pred CCccccCCCcce---eEEEeCCC---CHHHHHHHHHHHhcCC------CCCcCCCHHHHHHhC---CC------CCHHHH
Q psy7780 214 LDPALIRPGRID---RKIEFPLP---DEKTKRRIFNIHTSRM------TLAEDVNLQELIMAK---DD------LSGADI 272 (317)
Q Consensus 214 Ld~al~rpgRf~---~~I~~~~P---~~~~r~~Il~~~l~~~------~~~~~~~~~~ia~~t---~g------~s~~dl 272 (317)
++++|++ ||+ ..+.|+.. ..+....+++.+.+.. ..-++..+..+++.. .| .+.+++
T Consensus 267 l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 267 MHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp SCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred cCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 9999999 996 56666542 4555666665443221 111222344454432 45 379999
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 273 KAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 273 ~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
.++++.|...|..+++..|+.+|+.+|++.
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 999999999998888999999999999864
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=113.15 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=101.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+ .++.+++.+- ....+...++++++.+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHHHTTS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHHHHhh
Confidence 37899999999999 77766543 2444443210 011234567888877653
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. .+.|++|||+|.+... ..+.|+..++.-. .++++|.+||+
T Consensus 103 ~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEep~---------------------~~~~~Il~t~~ 147 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTDA--------------AANALLKTLEEPP---------------------AETWFFLATRE 147 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTSCC---------------------TTEEEEEEESC
T ss_pred ccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcCCC---------------------CCeEEEEEeCC
Confidence 2 3579999999998421 2234555554321 56889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
++.+++++++ |+. .+.|++|+.++..++++... .++ +..+..++..+.| +++.+.++++
T Consensus 148 ~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 148 PERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp GGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred hHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHhc
Confidence 9999999999 995 79999999999999998775 222 2234567777666 5555555544
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-12 Score=102.81 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=73.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++++|+||||||+ +++++.+ +|+.++|+++...+ ...+|+.|. +++|||||+|.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~~------- 90 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSRN------- 90 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCHH-------
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCHH-------
Confidence 68999999999999 8888887 99999999876543 455666554 479999999988432
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-CC----CCccccCCCcc-eeEEEeCC
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-ET----LDPALIRPGRI-DRKIEFPL 232 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-~~----Ld~al~rpgRf-~~~I~~~~ 232 (317)
.+..+..+++... . .++.+|+|||++ +. +++.|.. || ...|++|+
T Consensus 91 ----~q~~Ll~~l~~~~----~-------------------~~~~iI~~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 91 ----IQTGITFIIGKAE----R-------------------CRVRVIASCSYAAGSDGISCEEKLAG--LFSESVVRIPP 141 (143)
T ss_dssp ----HHHHHHHHHHHHT----T-------------------TTCEEEEEEEECTTTC--CHHHHHHH--HSSSEEEEECC
T ss_pred ----HHHHHHHHHHhCC----C-------------------CCEEEEEecCCCHHHHHhCccHHHHH--HhcCcEEeCCC
Confidence 3455556665532 1 567799999874 33 3344444 54 34677765
Q ss_pred C
Q psy7780 233 P 233 (317)
Q Consensus 233 P 233 (317)
.
T Consensus 142 L 142 (143)
T 3co5_A 142 L 142 (143)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.6e-12 Score=135.33 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=83.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechh----hh--------hhhcCC----chHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSE----LI--------QKYLGD----GPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~----l~--------~~~~g~----~~~~l~~~f~~a~~~~P~I 139 (317)
++|+|||||||||+ ++|.+. +-+-+.|+..+ +. ++|+++ +++.++.+|..|++.+||+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~ 1163 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1163 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeE
Confidence 48999999999999 556555 33444444443 33 677888 8999999999999999999
Q ss_pred EeecccccccccccC---CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 140 VFIDEIDAVGTKRYD---SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 140 i~iDEiD~l~~~r~~---~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
||+|++|+|++.++. .++....-..|.++++|.++++.... .+|+|| +||+.
T Consensus 1164 i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~-------------------~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1164 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-------------------SNTLLI-FINQI 1218 (1706)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH-------------------TTCEEE-EEECE
T ss_pred EEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhcc-------------------CCeEEE-Eeccc
Confidence 999999999999532 22212244567799999999997766 677777 77774
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-11 Score=100.35 Aligned_cols=105 Identities=9% Similarity=0.039 Sum_probs=70.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
|+|++|+||||||+ ++++.. +.+|+ ++|+.+.+. ......|+.|. .++|||||+|.+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~---~g~l~ldei~~l~~~---- 91 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ---GGTLVLSHPEHLTRE---- 91 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT---TSCEEEECGGGSCHH----
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC---CcEEEEcChHHCCHH----
Confidence 78999999999999 788776 77899 999886543 34455666553 479999999988432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCccccCCCcce-eE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDPALIRPGRID-RK 227 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~al~rpgRf~-~~ 227 (317)
.+..+..++ .... .++.+|+|||++- .+.+.+.. |+. ..
T Consensus 92 -------~q~~Ll~~l---~~~~---------------------~~~~~I~~t~~~~~~~~~~~~~~~~L~~--rl~~~~ 138 (145)
T 3n70_A 92 -------QQYHLVQLQ---SQEH---------------------RPFRLIGIGDTSLVELAASNHIIAELYY--CFAMTQ 138 (145)
T ss_dssp -------HHHHHHHHH---HSSS---------------------CSSCEEEEESSCHHHHHHHSCCCHHHHH--HHHHHE
T ss_pred -------HHHHHHHHH---hhcC---------------------CCEEEEEECCcCHHHHHHcCCCCHHHHH--HhcCCE
Confidence 344444444 2211 4567999999742 34455554 542 35
Q ss_pred EEeCCC
Q psy7780 228 IEFPLP 233 (317)
Q Consensus 228 I~~~~P 233 (317)
|++|+.
T Consensus 139 i~lPpL 144 (145)
T 3n70_A 139 IACLPL 144 (145)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 666653
|
| >3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=86.70 Aligned_cols=59 Identities=34% Similarity=0.592 Sum_probs=56.2
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccC
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSD 59 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 59 (317)
+.||+|+|.+|+++++|+++++++|++.+.++++++.|+||++|++|.+++.++++||.
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 36999999999999999999999999999999999999999999999999999999985
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-10 Score=104.01 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=88.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC----CceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~Ii~iDEiD~l 148 (317)
.+||+||||+|||+ ++|+.+ ...++.+++++ ...+...++++++.+.... ..|++|||+|.+
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead~l 94 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM 94 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHh
Confidence 47899999999998 777652 34677777642 0133456888888886432 359999999998
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEE
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKI 228 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I 228 (317)
... .++. |+..++... .++++|.+||.++.|.|++++ | .+
T Consensus 95 t~~-----------a~na---LLk~LEep~---------------------~~t~fIl~t~~~~kl~~tI~S--R---~~ 134 (305)
T 2gno_A 95 TQQ-----------AANA---FLKALEEPP---------------------EYAVIVLNTRRWHYLLPTIKS--R---VF 134 (305)
T ss_dssp CHH-----------HHHH---THHHHHSCC---------------------TTEEEEEEESCGGGSCHHHHT--T---SE
T ss_pred CHH-----------HHHH---HHHHHhCCC---------------------CCeEEEEEECChHhChHHHHc--e---eE
Confidence 422 2333 444444322 567888888999999999999 8 89
Q ss_pred EeCCCCHHHHHHHHHHHh
Q psy7780 229 EFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l 246 (317)
+|++|+.++..++++..+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998776
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-09 Score=91.69 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=75.4
Q ss_pred HHHhhhcCCCchh-hhh----h------cCC-ceEEEEechhhhhhhc----------CCchH--HHHHHHHHH--HhhC
Q psy7780 83 ELIQKYLGDGPKL-AVA----N------QTS-ATFLRVVGSELIQKYL----------GDGPK--LVRELFRVA--EEHA 136 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-aiA----~------~~~-~~~~~v~~s~l~~~~~----------g~~~~--~l~~~f~~a--~~~~ 136 (317)
.|++|+||+|||+ +++ . ..| .+++..++.+|.-.+. ..... ....+++.+ ....
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENI 87 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGGT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccccC
Confidence 5789999999999 333 1 345 6666666665532221 11110 112333331 2344
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
++||+|||++.+.+.+... ... . .++..+..-.. ..+-+|.+|+.++.|+.
T Consensus 88 ~~vliIDEAq~l~~~~~~~-~e~----~----rll~~l~~~r~--------------------~~~~iil~tq~~~~l~~ 138 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAG-SKI----P----ENVQWLNTHRH--------------------QGIDIFVLTQGPKLLDQ 138 (199)
T ss_dssp TCEEEETTGGGTSBCCCTT-CCC----C----HHHHGGGGTTT--------------------TTCEEEEEESCGGGBCH
T ss_pred ceEEEEEChhhhccCcccc-chh----H----HHHHHHHhcCc--------------------CCeEEEEECCCHHHHhH
Confidence 6899999999998765321 111 1 23333332211 34557888888999999
Q ss_pred cccCCCcceeEEEeCCCCHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~ 237 (317)
++++ |++..++++.|....
T Consensus 139 ~lr~--ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 139 NLRT--LVRKHYHIASNKMGM 157 (199)
T ss_dssp HHHT--TEEEEEEEEECSSCC
T ss_pred HHHH--HhheEEEEcCcccCc
Confidence 9999 999999998865443
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=8.9e-08 Score=108.61 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=113.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
|.+++||||||||. ++|+.+|.+++.++|++-++ ...+..+|.-|.+.. +.++|||++.+-.
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~-------- 711 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDE-------- 711 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCH--------
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcCh--------
Confidence 56789999999999 99999999999999987543 456778888776654 8999999998632
Q ss_pred chhHHHHHHHHHHHHhcC-CCcccccccchhhhcccccccCCCCeEEEEEcC----CCCCCCccccCCCcceeEEEeCCC
Q psy7780 159 GEREIQRTMLELLNQLDG-FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN----RIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN----~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
++.+++.+.+..+.. +... .......+....+..++.|++|.| ....||+++++ || +.+.+..|
T Consensus 712 ---evLs~l~~~l~~i~~al~~~-----~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~P 780 (2695)
T 4akg_A 712 ---KVLSAVSANIQQIQNGLQVG-----KSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSP 780 (2695)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHT-----CSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCC
T ss_pred ---HHHHHHHHHHHHHHHHHHcC-----CcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCC
Confidence 345555433332211 1000 001122334455567788999999 34579999999 99 58999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcC-----CCHHH-HHHhC-----CCCCHHHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLAED-----VNLQE-LIMAK-----DDLSGADIKAICTEAGLM 282 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~-----~~~~~-ia~~t-----~g~s~~dl~~l~~~A~~~ 282 (317)
+.+...+|+-.... ...... +.+-. +.+.. ..|.-+.++.+++.|+..
T Consensus 781 d~~~i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 781 QSGTIAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp CHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 99998888543221 110100 00111 11122 247889999998877654
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-08 Score=97.73 Aligned_cols=193 Identities=15% Similarity=0.067 Sum_probs=110.4
Q ss_pred hHHHhhhcCCCchh---hh-hhcCCceEEEE-ech---hhhhhhcCC--chHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AV-ANQTSATFLRV-VGS---ELIQKYLGD--GPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---ai-A~~~~~~~~~v-~~s---~l~~~~~g~--~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
++|+.|+||| ||+ ++ ++-+....+.. .++ .+.....+. ..-.- -.+..|.. .|+|+|||+.+-+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~-G~l~LAdg---Gvl~lDEIn~~~~- 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRA-GAAVLADG---GILAVDHLEGAPE- 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEE-CHHHHTTT---SEEEEECCTTCCH-
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCC-CeeEEcCC---CeeehHhhhhCCH-
Confidence 5899999999 999 77 66554433221 111 121110000 00000 01222322 5999999998732
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----------CCCccccC
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----------TLDPALIR 220 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----------~Ld~al~r 220 (317)
..+..|.+.+++-. +++.+. .+|.++.||+|+|..+ .|++++++
T Consensus 315 ----------~~qsaLlEaMEe~~-------------VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD 369 (506)
T 3f8t_A 315 ----------PHRWALMEAMDKGT-------------VTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS 369 (506)
T ss_dssp ----------HHHHHHHHHHHHSE-------------EEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred ----------HHHHHHHHHHhCCc-------------EEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence 23555666665411 111111 4558899999999875 78999999
Q ss_pred CCcceeE-EEeCCCCHHHH---------HHHHHHH---hc--C--CCCCcCCCHHHHH-----------H------hCCC
Q psy7780 221 PGRIDRK-IEFPLPDEKTK---------RRIFNIH---TS--R--MTLAEDVNLQELI-----------M------AKDD 266 (317)
Q Consensus 221 pgRf~~~-I~~~~P~~~~r---------~~Il~~~---l~--~--~~~~~~~~~~~ia-----------~------~t~g 266 (317)
|||.. +.+..|+.+.- .+.++.+ .+ . ..+.++ ..+.+. . ..-|
T Consensus 370 --RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e-a~~yI~~~y~~tR~~~~~~~~~~~~~~g 446 (506)
T 3f8t_A 370 --HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE-ARKRLEHWYETRREEVEERLGMGLPTLP 446 (506)
T ss_dssp --TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH-HHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred --heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH-HHHHHHHHHHHHhcCccccccccccccc
Confidence 99854 34555654331 1122222 12 1 111111 011111 0 2458
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
.|++.+..+++-|...|.-+.+..|+.+|+.+|++-+...-+
T Consensus 447 iSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 447 VTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987765443
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-09 Score=98.25 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=68.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSN 156 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~ 156 (317)
..+++||||||||+ ++|.+.+ +.|+.+...+.++.+..+.+..++.+++.+.+.. +|+||+++.+.....+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s 202 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNT 202 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-------
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccccc
Confidence 45899999999999 5555443 4466663344444444555666777777776654 999999999966543211
Q ss_pred CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 157 SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 157 ~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
.. ....+.+.+++..++++... .++.+|++|| +...|+++
T Consensus 203 ~~--G~v~~~lrqlL~~L~~~~k~-------------------~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 203 TS--GGISRGAFDLLSDIGAMAAS-------------------RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHH-------------------HTCEEEEECC-CSSCSSSH
T ss_pred cc--chHHHHHHHHHHHHHHHHhh-------------------CCCEEEEEeC-CcccchhH
Confidence 11 11234455666666555433 4577888888 56666664
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=85.05 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=97.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhh-----------hhh-----------------hcCC---------
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSEL-----------IQK-----------------YLGD--------- 120 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l-----------~~~-----------------~~g~--------- 120 (317)
+..+++|++|+|||+ .++++.+..++.+++... ... ..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 357899999999999 677776666777776532 000 0000
Q ss_pred ---------chHHHHHHHHHHHhh--CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhh
Q psy7780 121 ---------GPKLVRELFRVAEEH--APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEV 189 (317)
Q Consensus 121 ---------~~~~l~~~f~~a~~~--~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~ 189 (317)
....+..+++...+. .|.+|+|||++.+.... ..+....+..+.+..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-------~~~~~~~l~~~~~~~--------------- 168 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-------GVNLLPALAYAYDNL--------------- 168 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-------TCCCHHHHHHHHHHC---------------
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-------chhHHHHHHHHHHcC---------------
Confidence 012455666655543 38999999999986421 011223333333321
Q ss_pred hcccccccCCCCeEEEEEcCCCCCCC---------ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHH
Q psy7780 190 YSSLTLIYLPGDVKVIMATNRIETLD---------PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQEL 260 (317)
Q Consensus 190 ~~~~~~~~~~~~v~vI~tTN~~~~Ld---------~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~i 260 (317)
.++.+|+|++....+. ..+. ||+...+.+++.+.++..++++..+...+...+ +...+
T Consensus 169 ----------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i 235 (357)
T 2fna_A 169 ----------KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVV 235 (357)
T ss_dssp ----------TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHH
T ss_pred ----------CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHH
Confidence 2455777766432111 2232 366678999999999999999887653222222 24778
Q ss_pred HHhCCCCCHHHHHHHHHH
Q psy7780 261 IMAKDDLSGADIKAICTE 278 (317)
Q Consensus 261 a~~t~g~s~~dl~~l~~~ 278 (317)
...|.|+ |.-+..++..
T Consensus 236 ~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 236 YEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHCSC-HHHHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHH
Confidence 8888884 5566665543
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=91.16 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=95.6
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE---------
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA--------- 207 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t--------- 207 (317)
|.|+||||+|.+.. ...+.|+..++... .++++++|
T Consensus 296 ~~VliIDEa~~l~~--------------~a~~aLlk~lEe~~---------------------~~~~il~tn~~~~~i~~ 340 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI--------------ECFTYLHRALESSI---------------------APIVIFASNRGNCVIRG 340 (456)
T ss_dssp ECEEEEESGGGCBH--------------HHHHHHHHHTTSTT---------------------CCEEEEEECCSEEECBT
T ss_pred ceEEEEechhhcCH--------------HHHHHHHHHhhccC---------------------CCEEEEecCCccccccc
Confidence 46999999999832 23444555554322 34544454
Q ss_pred cC---CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhC-CCCCHHHHHHHHHHHHHH
Q psy7780 208 TN---RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK-DDLSGADIKAICTEAGLM 282 (317)
Q Consensus 208 TN---~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t-~g~s~~dl~~l~~~A~~~ 282 (317)
|+ .++.|+|.+++ ||.. +.|++|+.++..++++......... ++..+..++..+ .| +++....+++.|...
T Consensus 341 ~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~ 416 (456)
T 2c9o_A 341 TEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLL 416 (456)
T ss_dssp TSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHH
T ss_pred cccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 32 27789999999 9975 6999999999999998876432222 222355566666 55 899999999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 283 ALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 283 a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
|..+++..|+.+|+.+++.-++..
T Consensus 417 A~~~~~~~v~~~~v~~~~~~~~d~ 440 (456)
T 2c9o_A 417 AKINGKDSIEKEHVEEISELFYDA 440 (456)
T ss_dssp HHHTTCSSBCHHHHHHHHHHSCCH
T ss_pred HhhcCCCccCHHHHHHHHHHhcCh
Confidence 999999999999999998876533
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-08 Score=91.36 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=105.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hc--------CCchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YL--------GDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~--------g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
+++++|.+||||++ ++.... +.+|+.++|+.+-.. .+ |... .-...|+.|.. .+|||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~---gtlfl 237 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADG---GTLFL 237 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCC---cEEEE
Confidence 67899999999999 444333 469999999875321 11 1111 11234555433 69999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ET 213 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~ 213 (317)
|||+.+.. +.+..|..+|+.-. ...+. ...+.++.+|+|||+. ..
T Consensus 238 dei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~---------------~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 238 DEIGELSL-----------EAQAKLLRVIESGKFYRLGGR---------------KEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp ESGGGCCH-----------HHHHHHHHHHHHSEECCBTCC---------------SBEECCCEEEEEESSCHHHHHHTTS
T ss_pred cChhhCCH-----------HHHHHHHHHHhcCcEEeCCCC---------------ceeeccEEEEEeCCCCHHHHHHcCC
Confidence 99999843 34666667766511 11110 0011468899999973 22
Q ss_pred CCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCCHHHHHHhC-CCC--CHHHHHHHHHHHHHH
Q psy7780 214 LDPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVNLQELIMAK-DDL--SGADIKAICTEAGLM 282 (317)
Q Consensus 214 Ld~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~t-~g~--s~~dl~~l~~~A~~~ 282 (317)
+.+.|.. |+. ..|++|+.. .++...+++.++++. ... ...+.+.+.... ..+ +-++|++++++|+..
T Consensus 292 fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 292 FREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp SCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 3444443 442 456666653 366666666665432 211 112222222221 334 456899999988776
Q ss_pred HHHhcCCCcCHHHHHHHH
Q psy7780 283 ALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 283 a~~~~~~~it~~d~~~al 300 (317)
+ ....|+.+|+-..+
T Consensus 370 ~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 370 S---EGKFIDRGELSCLV 384 (387)
T ss_dssp C---CSSEECHHHHHHHC
T ss_pred C---CCCcCcHHHCcHhh
Confidence 5 34579999986543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.7e-08 Score=79.64 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=39.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
...|+||+|+|||+ +++..+ |...+++++.++... +....|.+|+|||++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 56789999999999 666655 777888888776543 112357899999998753
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=78.97 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=93.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhh------------h---hhcCC---------------------c
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELI------------Q---KYLGD---------------------G 121 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~------------~---~~~g~---------------------~ 121 (317)
+..+++|++|+|||+ .++++.+ ++.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 357899999999999 7777766 6666654321 1 11111 0
Q ss_pred hHHHHHHHHH----HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRV----AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~----a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
...+..+++. +....|.+|+|||++.+.... .....+....+..+++..
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~~~~~~~~~L~~~~~~~----------------------- 162 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SRGGKELLALFAYAYDSL----------------------- 162 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TTTTHHHHHHHHHHHHHC-----------------------
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----ccchhhHHHHHHHHHHhc-----------------------
Confidence 1223333333 333348999999999986421 011223334444443321
Q ss_pred CCCCeEEEEEcCCCCCC---------CccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCC
Q psy7780 198 LPGDVKVIMATNRIETL---------DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 267 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~L---------d~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~ 267 (317)
.++.+|.|+.....+ ...+. ||+...+.+++.+.++..++++..+...+.. ....+..+...|.|+
T Consensus 163 --~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 163 --PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp --TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred --CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 345566665442111 22233 3666789999999999999998876543322 223456677778774
Q ss_pred CHHHHHHHHH
Q psy7780 268 SGADIKAICT 277 (317)
Q Consensus 268 s~~dl~~l~~ 277 (317)
|.-+..++.
T Consensus 239 -P~~l~~~~~ 247 (350)
T 2qen_A 239 -PGWLVVFGV 247 (350)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 555655554
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-08 Score=81.89 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=41.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCchH-HHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDGPK-LVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~~~-~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
..+|+||||||||+ ++|+.+ |..++.+++.++...+...... ....+++. -..|.+|+|||++..
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 57899999999999 666655 6677788888776543211000 00012222 235789999999854
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.4e-07 Score=104.73 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=91.9
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHH-----Hh-----------hCCceEe
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA-----EE-----------HAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a-----~~-----------~~P~Ii~ 141 (317)
|+||.||||||||+ ++++..+.+++.++++.-. +...+...++.- +. ....|+|
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlF 1379 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVF 1379 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEE
Confidence 89999999999997 5666667788889887632 234455555421 00 1236999
Q ss_pred ecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCc
Q psy7780 142 IDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDP 216 (317)
Q Consensus 142 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~ 216 (317)
|||++--.... -+.......|.++++. .++.... +...... .++.+|+|.|.|. .|++
T Consensus 1380 iDDiNmp~~D~-----yGtQ~~ielLrqlld~-~g~yd~~----------~~~~~~i-~d~~~vaamnPp~~gGr~~l~~ 1442 (3245)
T 3vkg_A 1380 CDEINLPSTDK-----YGTQRVITFIRQMVEK-GGFWRTS----------DHTWIKL-DKIQFVGACNPPTDAGRVQLTH 1442 (3245)
T ss_dssp ETTTTCCCCCT-----TSCCHHHHHHHHHHHH-SEEEETT----------TTEEEEE-SSEEEEEEECCTTSTTCCCCCH
T ss_pred ecccCCCCccc-----cccccHHHHHHHHHHc-CCeEECC----------CCeEEEe-cCeEEEEEcCCCCCCCCccCCH
Confidence 99998532221 1223345566666654 2221110 0011111 6788999999884 5999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
+++| ||. .++++.|+.++...|+..++.
T Consensus 1443 Rf~r--~F~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1443 RFLR--HAP-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp HHHT--TCC-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 9999 996 699999999999999876644
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-07 Score=79.39 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=43.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++++++ +.+++.++++++........ ...+..++..... +.+|+|||++...
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 67899999999999 777666 67888899988766432111 1112333443333 3699999997653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=97.04 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=66.1
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechh----hhhhhcC------------CchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSE----LIQKYLG------------DGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~----l~~~~~g------------~~~~~l~~~f~~a~~~~P~I 139 (317)
.++++||||||||+ ++|.+ .|.....++..+ +..+..| .+++.++.++..++..+|++
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~l 1508 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1508 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCE
Confidence 68899999999999 33333 344555555442 2222333 45678888899999999999
Q ss_pred Eeecccccccccc---cCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGTKR---YDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~~r---~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|+||+++.+.+.+ +..++.....-.+.+.++|.+|+++...
T Consensus 1509 VVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~ 1552 (2050)
T 3cmu_A 1509 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1552 (2050)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh
Confidence 9999999998753 2222212222356778888888877655
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-07 Score=87.93 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=69.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccc-cccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT-KRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~-~r~~~~~ 157 (317)
.+++.||||+|||| +++...+..++.+..++-. ....+.. ..+.+++++||++.+.. .|.- ..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~------~~q~~~~l~dd~~~~~~~~r~l-~~ 237 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGV------AIDQFLVVFEDVKGTGGESRDL-PS 237 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGG------GTTCSCEEETTCCCSTTTTTTC-CC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHH------hcchhHHHHHHHHHHHHHHhhc-cc
Confidence 46789999999999 8888877766554332200 0111222 22347889999999876 3311 11
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
+.. .. ....+.+.+|| .+.|+++||+++.+ +++++|||++..++..+
T Consensus 238 ~~~--~~-~~~~l~~~ldG------------------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 238 GQG--IN-NLDNLRDYLDG------------------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CSH--HH-HHHTTHHHHHC------------------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred cCc--ch-HHHHHHHHhcC------------------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 111 11 22344444553 34588999999999 79999999998777654
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-06 Score=82.48 Aligned_cols=168 Identities=17% Similarity=0.276 Sum_probs=92.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechhhhhh-------------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELIQK-------------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~~~-------------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
++++.|++||||++ ++....+. .|+.++|+.+-.. +.|... .-.-.|+.|.. ..||||
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a~~---gtlfld 229 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELADQ---GTLFLD 229 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHTTT---SEEEEE
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhcCC---CeEEec
Confidence 68899999999998 44443332 3999999864221 111110 01123454433 589999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCC
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETL 214 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~L 214 (317)
||+.+.. ..+..|..+|+.-. ...+. ...+-++.+|+|||+. ..+
T Consensus 230 ei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~---------------~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 230 EVGELDQ-----------RVQAKLLRVLETGSFTRLGGN---------------QKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp TGGGSCH-----------HHHHHHHHHHHHSEECCBTCC---------------CBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ChhhCCH-----------HHHHHHHHHHHhCCcccCCCC---------------cceeeeeEEEEecCCCHHHHHHcCCc
Confidence 9999843 34666666666421 11110 0011467899999963 123
Q ss_pred CccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhcCC----CCC-cCCCH---HHHHHhC-CCCCHHHHHHHHHHHHHH
Q psy7780 215 DPALIRPGRID-RKIEFPLPDE--KTKRRIFNIHTSRM----TLA-EDVNL---QELIMAK-DDLSGADIKAICTEAGLM 282 (317)
Q Consensus 215 d~al~rpgRf~-~~I~~~~P~~--~~r~~Il~~~l~~~----~~~-~~~~~---~~ia~~t-~g~s~~dl~~l~~~A~~~ 282 (317)
.+.|.. |+. ..|++|+..+ ++...+++.++.+. ... ...+- ..+.... .| +-+++++++++|+..
T Consensus 284 r~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpG-NvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 284 REDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKG-NVRELKNLIERAVIL 360 (368)
T ss_dssp CHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTT-HHHHHHHHHHHHHHT
T ss_pred cHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHh
Confidence 334444 443 3577887755 67777777766432 111 12222 2232222 22 457788888877654
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.7e-06 Score=78.90 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD 201 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (317)
+...+...+.|..+ .|+++||+|.++....+ .+++.....+-..||..+++..... +| ....-.+
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~-------~~----~~~d~~~ 302 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVST-------KH----GMVKTDH 302 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEE-------TT----EEEECTT
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhccccccc-------cc----ceecCCc
Confidence 44455566666454 59999999999876431 2222211123335555566643321 01 0011268
Q ss_pred eEEEEEc-----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH---HHh----------cCCCCC-cCCCHHHHHH
Q psy7780 202 VKVIMAT-----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN---IHT----------SRMTLA-EDVNLQELIM 262 (317)
Q Consensus 202 v~vI~tT-----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~---~~l----------~~~~~~-~~~~~~~ia~ 262 (317)
|++|+|. |..+ +-|.|+. ||..+|.|+.++.++..+|+. .++ ....+. .+..+..|++
T Consensus 303 ilfI~~gaf~~~~~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~ 379 (444)
T 1g41_A 303 ILFIASGAFQVARPSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 379 (444)
T ss_dssp CEEEEEECCSSCCGGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred EEEEeccccccCChhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHH
Confidence 9999987 5444 5578998 999999999999999999993 111 111111 2223555655
Q ss_pred -------hCCCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHH
Q psy7780 263 -------AKDDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 263 -------~t~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~ 304 (317)
.|...-.+.|++++..+...+..+- .-.|+.+++.+.+..++
T Consensus 380 ~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 380 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp HHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred HHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 3566667777777766554433331 23588998887766544
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.2e-07 Score=82.75 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=42.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++|+++ +..++.+++++++....+.. ...+...+.... .+.+|+|||++...
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 67899999999999 666644 57888899988876543321 111222233222 34699999997653
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=7.8e-06 Score=93.80 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=93.3
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCch
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE 160 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~ 160 (317)
...||+|||||. .+|+.+|.+++.++|++-++ ...+..+|.-+-+. .+..+|||++.+-
T Consensus 608 ~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~----------- 669 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLE----------- 669 (3245)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC-----------
T ss_pred CCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCC-----------
Confidence 477999999998 99999999999999987433 45667777766554 3789999999872
Q ss_pred hHHHHHHHHHHHHhcCCCcccccccchhhhcc-cccccCCCCeEEEEEcCC----CCCCCccccCCCcceeEEEeCCCCH
Q psy7780 161 REIQRTMLELLNQLDGFDSRVQNRRLSEVYSS-LTLIYLPGDVKVIMATNR----IETLDPALIRPGRIDRKIEFPLPDE 235 (317)
Q Consensus 161 ~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~-~~~~~~~~~v~vI~tTN~----~~~Ld~al~rpgRf~~~I~~~~P~~ 235 (317)
.++.+++.+.+..+...-... ....... +....+.....+++|.|. ...||++|+. || +.|.++.|+.
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~----~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKEN----SKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----CSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcC----CCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 334555544443221110000 0011122 334555677889999984 4679999999 99 5799999999
Q ss_pred HHHHHHHHH
Q psy7780 236 KTKRRIFNI 244 (317)
Q Consensus 236 ~~r~~Il~~ 244 (317)
+...+|+-.
T Consensus 743 ~~i~ei~L~ 751 (3245)
T 3vkg_A 743 EMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888643
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=73.11 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=102.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC---Cc-eEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeeccccc-cc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SA-TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDA-VG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~-~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~-l~ 149 (317)
.+||+|++|+||++ ++++.+ +. ++..+.. -+ ...++++++.+.. ...-|++|||+|. +.
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 47899999999987 444433 22 2222211 01 2345666666643 2246999999987 52
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC------CCCCccccCCCc
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI------ETLDPALIRPGR 223 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~------~~Ld~al~rpgR 223 (317)
.. ....| +..++... .++++|.+|+.+ ..+.+++.+ |
T Consensus 91 ~~-----------~~~aL---l~~le~p~---------------------~~~~~il~~~~~~~~~~~~k~~~~i~s--r 133 (343)
T 1jr3_D 91 AA-----------INEQL---LTLTGLLH---------------------DDLLLIVRGNKLSKAQENAAWFTALAN--R 133 (343)
T ss_dssp TT-----------HHHHH---HHHHTTCB---------------------TTEEEEEEESCCCTTTTTSHHHHHHTT--T
T ss_pred hH-----------HHHHH---HHHHhcCC---------------------CCeEEEEEcCCCChhhHhhHHHHHHHh--C
Confidence 11 22333 33333321 345555555543 346778888 7
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
+ ..+.|.+++.++....++..+++.++. +...+..+++.+.| +.+++.+.++..+..+ +...||.+|+.+.+..
T Consensus 134 ~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 134 S-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp C-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred c-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 7 478999999999999998887765544 22235556666554 5666666666544432 3457898888776554
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.87 E-value=8.2e-06 Score=70.22 Aligned_cols=25 Identities=4% Similarity=0.021 Sum_probs=20.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
..||+||||||||+ ++|+.++-.++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 37899999999999 88888765443
|
| >3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.9e-05 Score=67.78 Aligned_cols=61 Identities=23% Similarity=0.204 Sum_probs=55.3
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCch
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPM 64 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 64 (317)
++|+|+++++++.++|+ +++++|++.++++++++.|+||++|.|| .++.+++++|.+.-.-
T Consensus 100 ~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~Ge 160 (251)
T 3m9b_A 100 GYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVGE 160 (251)
T ss_dssp EEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCSE
T ss_pred eEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCccc
Confidence 68999999999999999 4779999999999999999999999996 5999999999776443
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=97.48 E-value=4e-05 Score=68.58 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=18.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
.++|+||||||||+ ++|+....
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 47899999999999 89987654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=61.19 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=16.6
Q ss_pred HHhhhcCCCchh---hhhhcCCceE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATF 105 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~ 105 (317)
.+.||+|+|||| .++..++..+
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcC
Confidence 468999999999 6776665433
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=66.05 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechhhh----hhhcCC------------chHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSELI----QKYLGD------------GPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l~----~~~~g~------------~~~~l~~~f~~a~~~~P~I 139 (317)
..+++|+||+|||+ .+|. ..+...++++...-. ....|. .+..+..+...++...|.+
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 46789999999999 3332 234556666543211 111221 1222222333444667999
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
|+||++..+.+
T Consensus 143 IVIDsl~~l~~ 153 (349)
T 2zr9_A 143 IVIDSVAALVP 153 (349)
T ss_dssp EEEECGGGCCC
T ss_pred EEEcChHhhcc
Confidence 99999999985
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00037 Score=64.95 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=41.6
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhh----hhcC------------CchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQ----KYLG------------DGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~----~~~g------------~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||+|||+ .+|.. .+..+++++...... ..+| ..+..+..+....+...|.+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 46789999999999 33333 355666776643211 1111 11222333333334577899
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
++||.+..+.+
T Consensus 143 vVIDSi~~l~~ 153 (356)
T 3hr8_A 143 IVVDSVAALVP 153 (356)
T ss_dssp EEEECTTTCCC
T ss_pred EEehHhhhhcC
Confidence 99999999886
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00058 Score=63.86 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhh----hhhcCC------------chHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELI----QKYLGD------------GPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~----~~~~g~------------~~~~l~~~f~~a~~~~P~I 139 (317)
..+++|+||+|||+ .+|.+ .+..+++++...-. ....|. .+..+..+-...+...+.+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 46789999999999 33322 35566666654311 111121 1222222222334567899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||.+..+.+.
T Consensus 156 VVIDsl~~l~~~ 167 (366)
T 1xp8_A 156 VVVDSVAALTPR 167 (366)
T ss_dssp EEEECTTTCCCS
T ss_pred EEEeChHHhccc
Confidence 999999999853
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00073 Score=58.39 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=41.5
Q ss_pred hHHHhhhcCCCchh---hhhhc--C-------CceEEEEechh------hhh--hhcCC---------------chH---
Q psy7780 82 SELIQKYLGDGPKL---AVANQ--T-------SATFLRVVGSE------LIQ--KYLGD---------------GPK--- 123 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~--~-------~~~~~~v~~s~------l~~--~~~g~---------------~~~--- 123 (317)
..++.||||+|||+ .+|.. . +...++++..+ +.. ...|. ...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 105 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQT 105 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHH
Confidence 35789999999999 44442 2 45677776543 110 01111 111
Q ss_pred -HHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 124 -LVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 124 -~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
.+..+.+.+....|.+|+|||+..+...
T Consensus 106 ~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 106 QLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1233444455667999999999988754
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.017 Score=50.16 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=33.2
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
+.+|..+++ +.|.+..+..|-.+ +++.+-...-..++..-..+... |+...|.+|-.-|...+
T Consensus 146 e~vpd~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 146 ETLPDWVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTA 208 (228)
T ss_dssp SCBCHHHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred CcCccHHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHH
Confidence 456777777 77767777766543 33333322222222222223332 78888877765454444
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0008 Score=74.82 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=59.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhh----cC--------CchHHHHHHHHHHHh----hCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKY----LG--------DGPKLVRELFRVAEE----HAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~----~g--------~~~~~l~~~f~~a~~----~~P~I 139 (317)
.+++.|+||+|||+ .+|.++ +.+++++++.+-.... .| ..+..+..+++.+++ ..|++
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~L 813 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 813 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCE
Confidence 56889999999998 333333 4578888876533332 33 223346667776655 67999
Q ss_pred Eeecccccccc-cccC--CCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGT-KRYD--SNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~-~r~~--~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|+||.+..+.. .... .++....-..+.+.+++..|..+...
T Consensus 814 VIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke 857 (2050)
T 3cmu_A 814 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857 (2050)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 3211 11111111234456666666655443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0024 Score=54.41 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhCCc--eEeeccccccc
Q psy7780 125 VRELFRVAEEHAPS--IVFIDEIDAVG 149 (317)
Q Consensus 125 l~~~f~~a~~~~P~--Ii~iDEiD~l~ 149 (317)
.+.+...+..+.|. +|+|||+..+.
T Consensus 110 ~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 110 VNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHHHhhCCCceEEEEECchHhh
Confidence 33444555667899 99999999875
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=61.46 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=41.6
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechh----hhhhhcCC-----------chHHHHHHHH-HHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSE----LIQKYLGD-----------GPKLVRELFR-VAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~----l~~~~~g~-----------~~~~l~~~f~-~a~~~~P~I 139 (317)
..+++|+||+|||+ .+|. ..+..+++++... ......|. ....+.++.. .++...+.+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 46889999999999 3332 2355677776632 21111121 1223333333 234567899
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
|+||.+..+.+
T Consensus 145 VVIDsl~~l~~ 155 (356)
T 1u94_A 145 IVVDSVAALTP 155 (356)
T ss_dssp EEEECGGGCCC
T ss_pred EEEcCHHHhcc
Confidence 99999999975
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0013 Score=60.29 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=42.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---------CceEEEEechhh------hh--hhcCC----------------ch---
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---------SATFLRVVGSEL------IQ--KYLGD----------------GP--- 122 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~l------~~--~~~g~----------------~~--- 122 (317)
..+++|+||+|||+ .+|... +...++++...- .. ...|. .+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~ 188 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQI 188 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHH
Confidence 46899999999998 333332 456677765431 10 01111 11
Q ss_pred HHHHHHHHHHHh-hCCceEeeccccccccc
Q psy7780 123 KLVRELFRVAEE-HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 123 ~~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~ 151 (317)
..+..+...+++ ..|.+|+||.+..+...
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 123344445555 67899999999998753
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0023 Score=54.25 Aligned_cols=29 Identities=7% Similarity=-0.051 Sum_probs=21.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
.++.|+||+|||+ .+|...+...++++..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 5789999999999 4444556677777654
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.007 Score=59.54 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=39.4
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEe-CCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEF-PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~-~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
.+..||.||........ . . |.. ..+.. ...+.++-.+++..+..............+++.+.|. |.-|..+
T Consensus 256 ~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 327 (591)
T 1z6t_A 256 SQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PLVVSLI 327 (591)
T ss_dssp SSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HHHHHHH
T ss_pred CCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cHHHHHH
Confidence 34557778765432221 1 1 221 12222 3678899999998887542212234467888888885 5444433
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0021 Score=58.88 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHhhhcCCCchh----hhhhc----CCceEEEEechhhh----hhhcCCc--------hHHHHHH-HHH------HHhh
Q psy7780 83 ELIQKYLGDGPKL----AVANQ----TSATFLRVVGSELI----QKYLGDG--------PKLVREL-FRV------AEEH 135 (317)
Q Consensus 83 ~Ll~G~pGtGKT~----aiA~~----~~~~~~~v~~s~l~----~~~~g~~--------~~~l~~~-f~~------a~~~ 135 (317)
.+++||||+|||+ .+++. .+...+++++.+-+ -...|-. +....++ ++. .+..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~ 110 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERG 110 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhcc
Confidence 5789999999999 22221 25677778764311 1112211 1122333 322 2456
Q ss_pred CCceEeeccccccccc
Q psy7780 136 APSIVFIDEIDAVGTK 151 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~ 151 (317)
.|.+|+||-+.++.++
T Consensus 111 ~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 111 EKVVVFIDSLGNLASK 126 (333)
T ss_dssp CCEEEEEECSTTCBCC
T ss_pred CceEEEEecccccccc
Confidence 7999999999999864
|
| >2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0025 Score=51.43 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=48.9
Q ss_pred eEEEeeeeecC-CcEEEecccCCeeeeeeccccCcc------------------CcCcccEEEEecccccccccccCC
Q psy7780 2 SVGTLEEIIDD-NHAIVSTSVGSEHYVSILSFVDKD------------------QLEPGCSVLLNHKVHAVVGVLSDD 60 (317)
Q Consensus 2 ~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~ 60 (317)
.|.++.|+|++ ++++|..+.+.+.++.+++.+... .+++||.+.+|.++.-.++.+|..
T Consensus 69 ev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~rag~A~E~ipk~ 146 (153)
T 2wfw_A 69 EISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTKAGYAFERIPKA 146 (153)
T ss_dssp EEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETTTTEEEEEECSC
T ss_pred CEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCCCceEEEEcCcc
Confidence 47889999999 899999999999999999888654 799999999999999998888743
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=59.86 Aligned_cols=70 Identities=10% Similarity=0.008 Sum_probs=41.8
Q ss_pred hHHHhhhcCCCchh---hhhhc---------CCceEEEEechhh------hh--hhcCC----------------ch---
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---------TSATFLRVVGSEL------IQ--KYLGD----------------GP--- 122 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---------~~~~~~~v~~s~l------~~--~~~g~----------------~~--- 122 (317)
-.+++|+||+|||+ .+|.. .+...++++...- .. ...|. .+
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~ 203 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQM 203 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHH
Confidence 46789999999999 33332 2556777765431 11 00111 11
Q ss_pred HHHHHHHHHHHh--hCCceEeeccccccccc
Q psy7780 123 KLVRELFRVAEE--HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 123 ~~l~~~f~~a~~--~~P~Ii~iDEiD~l~~~ 151 (317)
..+..+...+++ ..+.+|+||.+..+...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 122333445555 67899999999998743
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00048 Score=57.96 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
++++|+||+|||+
T Consensus 6 ~vi~G~~gsGKTT 18 (184)
T 2orw_A 6 TVITGPMYSGKTT 18 (184)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5689999999999
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0028 Score=69.61 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred hHHHhhhcCCCchh----hh--hhcCCceEEEEechh----------------hhhhhcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL----AV--ANQTSATFLRVVGSE----------------LIQKYLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----ai--A~~~~~~~~~v~~s~----------------l~~~~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
.+++|||+|+|||+ ++ |+..|-....++... |.-.+...++..+.-+...++..+|++
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~ 1512 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1512 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCE
Confidence 47899999999999 33 344566666665532 122245566888999999999999999
Q ss_pred EeecccccccccccCCCC---CchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGTKRYDSNS---GGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|++|-+.++.++..-.+. ..-.-..+.+++.|..+.+.-+.
T Consensus 1513 vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~ 1556 (1706)
T 3cmw_A 1513 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1556 (1706)
T ss_dssp EEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999987643221 11122346667777777776555
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=59.92 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCC
Q psy7780 129 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF 177 (317)
Q Consensus 129 f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 177 (317)
...+....|.+|+||++-.+....... .+...+.++.+.+++..+..+
T Consensus 266 ~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~l 313 (400)
T 3lda_A 266 AQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRL 313 (400)
T ss_dssp HHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHH
Confidence 344445679999999999887643221 122223344444444444433
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.03 Score=59.35 Aligned_cols=68 Identities=6% Similarity=0.061 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEeCC-CCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHH
Q psy7780 201 DVKVIMATNRIETLDPALIRPGRIDRKIEFPL-PDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIK 273 (317)
Q Consensus 201 ~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~-P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~ 273 (317)
+..||.||......... . .....+.++. ++.++-.++|..+.............+|++.+.|+ |--|+
T Consensus 257 ~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~ 325 (1249)
T 3sfz_A 257 QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLVVS 325 (1249)
T ss_dssp SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHHHH
T ss_pred CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHHHH
Confidence 34588888765443221 1 1234677775 78999999998877543322233467889998886 44444
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.016 Score=57.00 Aligned_cols=74 Identities=16% Similarity=0.329 Sum_probs=54.9
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--CCC
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--TLD 215 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~Ld 215 (317)
-+|+|||+..+.... ..++...+..+..+-- . -.|.+|.+|.+|. .|+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GR----a-------------------~GIhLIlaTQRPs~d~I~ 394 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKAR----A-------------------AGIHLILATQRPSVDVIT 394 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCT----T-------------------TTEEEEEEESCCCTTTSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHh----h-------------------CCeEEEEEecCccccccc
Confidence 589999999887532 1234455555554411 1 5688999999988 799
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
..++. -|..+|.|...+..+...|+.
T Consensus 395 ~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 395 GLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 98887 788899999999988888874
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=49.62 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=14.3
Q ss_pred hhCCceEeeccccccccc
Q psy7780 134 EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~ 151 (317)
...|.+|+|||.-.....
T Consensus 123 ~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp SSCEEEEEEETSSHHHHH
T ss_pred CCceeEEEECChHHHhcc
Confidence 567899999999877543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0015 Score=53.81 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=27.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||| ++|..++.+|+.++...+..
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 4689999999999 99999999998877655443
|
| >3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.017 Score=50.38 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=53.0
Q ss_pred eEEEeeeeecC-CcEEEecccCCeeeeeeccccCcc-----------------CcCcccEEEEecccccccccccCCCCc
Q psy7780 2 SVGTLEEIIDD-NHAIVSTSVGSEHYVSILSFVDKD-----------------QLEPGCSVLLNHKVHAVVGVLSDDTDP 63 (317)
Q Consensus 2 ~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~l~~~~~~ 63 (317)
.|.+|.|+|++ ++++|..+.+.+.++.+.+.+... .++|||.+.+|.++.-.++.+|.....
T Consensus 160 ev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~rag~A~E~ip~~~~~ 239 (251)
T 3m9b_A 160 EISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKAGYAFERIPLVPRG 239 (251)
T ss_dssp EEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTTTCBEEEECCCCC--
T ss_pred cEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCCCceEEEEccCCCCc
Confidence 47899999965 599999999999999999888665 899999999999999999988876554
Q ss_pred hh
Q psy7780 64 MV 65 (317)
Q Consensus 64 ~~ 65 (317)
..
T Consensus 240 ~~ 241 (251)
T 3m9b_A 240 SA 241 (251)
T ss_dssp --
T ss_pred ch
Confidence 43
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0063 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=17.8
Q ss_pred HHHHHHHh-hCCceEeeccccccccc
Q psy7780 127 ELFRVAEE-HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 127 ~~f~~a~~-~~P~Ii~iDEiD~l~~~ 151 (317)
.+....++ ..+.+|+||.+..+...
T Consensus 194 ~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 194 KIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp THHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHhhccCccEEEEECcHHHHHH
Confidence 34444455 56889999999998743
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.028 Score=48.27 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCceEeeccccccc
Q psy7780 127 ELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 127 ~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
.+-+.+.+..|.+|+||++..+.
T Consensus 119 ~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 119 VLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHHHHHHHHTCCEEEEETSGGGT
T ss_pred HHHHHHHHhCCCEEEECCchHhh
Confidence 33344455778999999999886
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0028 Score=55.11 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=37.9
Q ss_pred hHHHhhhcCCCchh---hhh---hcCCceEEEEechh-------hhhhhcCCc-----hHHHHHHHHHHHh----hCCce
Q psy7780 82 SELIQKYLGDGPKL---AVA---NQTSATFLRVVGSE-------LIQKYLGDG-----PKLVRELFRVAEE----HAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA---~~~~~~~~~v~~s~-------l~~~~~g~~-----~~~l~~~f~~a~~----~~P~I 139 (317)
-++++|+||+|||+ .++ ...+..++.+.+.. +.+. .|.. .....++++.+++ ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 56789999999999 222 22354555553221 1111 1211 1123456666665 34789
Q ss_pred Eeecccccc
Q psy7780 140 VFIDEIDAV 148 (317)
Q Consensus 140 i~iDEiD~l 148 (317)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999865
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0061 Score=56.47 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.2
Q ss_pred hCCceEeeccccccccc
Q psy7780 135 HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~ 151 (317)
..|.+|+|||+-++...
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 57999999999988743
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.018 Score=49.50 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhCCceEeeccccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+..+...++...+..+++|.+..+...
T Consensus 124 ~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 124 LRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 444555566778899999999988643
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=57.32 Aligned_cols=76 Identities=17% Similarity=0.367 Sum_probs=53.0
Q ss_pred Cc-eEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--C
Q psy7780 137 PS-IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--T 213 (317)
Q Consensus 137 P~-Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~ 213 (317)
|- +|+|||+..+.... ..++...+..+...-. . -.+.+|.+|.+|+ .
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~gR----a-------------------~GI~LIlaTQrp~~dv 346 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKAR----A-------------------AGIHLVLATQRPSVDV 346 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHCG----G-------------------GTEEEEEEESCCCTTT
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHhh----h-------------------CCcEEEEEecCCcccc
Confidence 54 78999998876421 1233344444433311 1 3577899999987 6
Q ss_pred CCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 214 LDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 214 Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
++..++. -|..+|.|...+..+.+.|+..
T Consensus 347 l~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 347 ITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp SCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred ccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 8888887 8888999999999998888753
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0087 Score=52.11 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech-hhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS-ELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s-~l~~~ 116 (317)
.++.+|+|+|||. +++...+...+.+... ++...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q 148 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHH
Confidence 5788999999999 4555666666666544 55543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0036 Score=51.77 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
+++.|+||+|||+ .+|+.++++|+.. .++.....|.
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g~ 46 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTGA 46 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcCC
Confidence 4688999999999 8999999888764 3444444443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.024 Score=52.57 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=40.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEech-hhh---------hhhcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGS-ELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s-~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.+++.||+|+|||| +++..+ +..++.+.-. ++. ....+.....+...+..|-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 57899999999999 555543 3344443211 111 111222233456677888889999999999
Q ss_pred c
Q psy7780 145 I 145 (317)
Q Consensus 145 i 145 (317)
+
T Consensus 205 p 205 (356)
T 3jvv_A 205 M 205 (356)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.037 Score=52.87 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=39.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhh-------------------hhhhcC-CchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSEL-------------------IQKYLG-DGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l-------------------~~~~~g-~~~~~l~~~f~~a~~~ 135 (317)
.+++.|+||+|||| .+|.. .|..+..+++-.. .....+ .....++..++.++..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~ 181 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK 181 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999 34432 3555555553211 000111 2234456778888877
Q ss_pred CCceEeecccc
Q psy7780 136 APSIVFIDEID 146 (317)
Q Consensus 136 ~P~Ii~iDEiD 146 (317)
.+.+|+||..-
T Consensus 182 ~~DvVIIDTaG 192 (443)
T 3dm5_A 182 GVDIIIVDTAG 192 (443)
T ss_dssp TCSEEEEECCC
T ss_pred CCCEEEEECCC
Confidence 77899999764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=50.83 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+++.|+||+|||| .++..++..++.+++-.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 5789999999999 888888866667776555
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.018 Score=48.86 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=63.5
Q ss_pred hhHHHhhhcCCCchh-hhh-----hcCCceEEEE---ech------hhhhhh-----------cCCc------hHHHHHH
Q psy7780 81 GSELIQKYLGDGPKL-AVA-----NQTSATFLRV---VGS------ELIQKY-----------LGDG------PKLVREL 128 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~-aiA-----~~~~~~~~~v---~~s------~l~~~~-----------~g~~------~~~l~~~ 128 (317)
|-+++|+.+|.|||+ |++ -..|..+..+ .+. .++... .-.. ....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 567899999999999 222 2225555555 221 233332 1011 2455667
Q ss_pred HHHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 129 FRVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 129 f~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++.+++.- ..+|+|||+-....-. --.. .-+.+++. .-. .+.-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g----~l~~----~ev~~~l~---~Rp---------------------~~~~v 156 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD----YLPL----EEVISALN---ARP---------------------GHQTV 156 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT----SSCH----HHHHHHHH---TSC---------------------TTCEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC----CCCH----HHHHHHHH---hCc---------------------CCCEE
Confidence 77776543 6899999997643221 0111 12233333 221 45669
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeC
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFP 231 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~ 231 (317)
|.|+|.+ +++|+. .-|.+-++.
T Consensus 157 IlTGr~a---p~~l~e--~AD~VTem~ 178 (196)
T 1g5t_A 157 IITGRGC---HRDILD--LADTVSELR 178 (196)
T ss_dssp EEECSSC---CHHHHH--HCSEEEECC
T ss_pred EEECCCC---cHHHHH--hCcceeeec
Confidence 9999874 667766 666665554
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0049 Score=50.02 Aligned_cols=27 Identities=0% Similarity=-0.144 Sum_probs=22.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+.+.|+||+|||| .+|+.++++++..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3578999999999 88999998887654
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.097 Score=51.14 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC--CCHHHHHHhCCCCCHHHHH
Q psy7780 203 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED--VNLQELIMAKDDLSGADIK 273 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~--~~~~~ia~~t~g~s~~dl~ 273 (317)
.||.||....... .. . .....+.++..+.++-.++|..+....+...+ ....+|++.+.|. |--|+
T Consensus 267 ~ilvTTR~~~v~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLAl~ 334 (549)
T 2a5y_B 267 RCLVTTRDVEISN-AA-S--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PATLM 334 (549)
T ss_dssp EEEEEESBGGGGG-GC-C--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHHHH
T ss_pred EEEEEcCCHHHHH-Hc-C--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHHHH
Confidence 4777776532211 11 1 13357899999999999999988432221010 1245566667664 43333
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.038 Score=49.35 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=12.3
Q ss_pred HhhCCceEeeccccccc
Q psy7780 133 EEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~ 149 (317)
..+.|.+|+|||.-.+.
T Consensus 144 ~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 144 SGLGCDVIILDHISIVV 160 (296)
T ss_dssp HTTCCSEEEEEEEC---
T ss_pred HhcCCCEEEEcCccccC
Confidence 56679999999999875
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.017 Score=50.84 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHhhhcCCCchh---hhhhc---CCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||| .++.. .|..++.++.-.+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 5689999999999 77776 788888777655543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.054 Score=51.73 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.7
Q ss_pred hhCCceEeeccccccccc
Q psy7780 134 EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~ 151 (317)
++.|.+|+||++..+...
T Consensus 311 ~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTCCCEEEEECGGGSCCS
T ss_pred HcCCCEEEEccHHHhccC
Confidence 467999999999998643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=46.90 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+.+.|+||+|||| .+|..++..++ ++..+..
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 4588999999999 88998887655 4444443
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.0068 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||| .+|..++++|+.
T Consensus 7 i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 4578999999999 899999988765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.0072 Score=49.80 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||+ .+|+.++..++..
T Consensus 14 i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5689999999999 8899988887654
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.0065 Score=49.46 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||||||| .+|..+|++++..
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4578999999999 8899999988764
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.0067 Score=50.30 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .++..++.+++..
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 5689999999999 8888888877653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.039 Score=48.94 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.|+||+|||+
T Consensus 32 i~~i~G~~GsGKTt 45 (279)
T 1nlf_A 32 VGALVSPGGAGKSM 45 (279)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 46789999999999
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.0069 Score=51.00 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=26.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
.+.+.|+||+|||| ++|+.++.+++.. .++.....|
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~~~~g 65 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIEERFH 65 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHHHHhC
Confidence 35789999999999 9999999888654 344443333
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.0059 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhc-CCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQ-TSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~-~~~~~~~v 108 (317)
+++.|+||||||+ .+|.. +|++++.+
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 5689999999999 88888 68777654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.033 Score=53.09 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=28.3
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh---------cCC--CcCHHHHHHHHHHHHh
Q psy7780 255 VNLQELIMAKDDLSGADIKAICTEAGLMALRE---------RRM--KVTNEDFKKSKESVLY 305 (317)
Q Consensus 255 ~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~---------~~~--~it~~d~~~al~~v~~ 305 (317)
.+.+.++.+.-| .+|+..++..|......+ ... ..+.+||.+.++.+.+
T Consensus 283 f~p~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 283 FNAKRFVSRILG--MGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp CCHHHHHHHHHC--SSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcC--CchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 345666665444 258888887664321111 122 7999999999998764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.0077 Score=49.74 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||+ .+|..+|++++..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 4578999999999 8899999887653
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.0088 Score=48.67 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+++.|+||+|||+ .+|+.++++++.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 4688999999999 889989988765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.01 Score=47.88 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||| .+ +.+|.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3578999999999 77 8888887654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.098 Score=49.76 Aligned_cols=17 Identities=12% Similarity=0.347 Sum_probs=14.3
Q ss_pred hhCCceEeecccccccc
Q psy7780 134 EHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~ 150 (317)
++.+.+|+||.+..+..
T Consensus 308 ~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 308 QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HSCCCEEEEECGGGCBC
T ss_pred HcCCCEEEEcChhhcCC
Confidence 46789999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.0085 Score=49.45 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.|.|+||+|||| .+|+.++.+++.
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4688999999999 888888876543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.0081 Score=49.37 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=17.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
+++.|+||+|||| .+|+.++.+++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5689999999999 88999998877
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.0093 Score=52.91 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=38.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhh-----------hhhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSEL-----------IQKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l-----------~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
.+++.||+|+|||| +++... .-.++.. ...+ ....+|.....++..+..|-...|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 46789999999999 555433 1222221 1110 011122222456777778877899999999
Q ss_pred cc
Q psy7780 144 EI 145 (317)
Q Consensus 144 Ei 145 (317)
|.
T Consensus 106 Ep 107 (261)
T 2eyu_A 106 EM 107 (261)
T ss_dssp CC
T ss_pred CC
Confidence 97
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.01 Score=50.66 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
++|.|+||+|||| .+|+.++.+++. ..+++.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 40 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDMLR 40 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHHH
Confidence 4689999999999 889999876654 334443
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.01 Score=49.05 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+++.|+||+|||| .+|+.++.+++ +..++.
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 4688999999999 78888887664 444444
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.011 Score=48.18 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=18.7
Q ss_pred HHHhhhcCCCchh---hhhh-cCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVAN-QTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~-~~~~~~~~ 107 (317)
+++.|+||+|||| .+++ ..+..++.
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4688999999999 7777 56654443
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.01 Score=49.20 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+|+.++.+++..
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5689999999999 8888898876654
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.012 Score=50.45 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
++|.|+||+|||| .+|+.++.+++..
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5689999999999 8899998876653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.022 Score=47.95 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=13.6
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
+.+.||+|+|||| .++..
T Consensus 4 i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhh
Confidence 3478999999999 55543
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.011 Score=50.43 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
++|.|+||+|||| .+|+.++++++.. .+++.
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~--d~li~ 41 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST--GDMLR 41 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh--hHHHH
Confidence 4688999999999 8999998776654 34443
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.01 Score=49.83 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .+|+.++.+++.+
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5789999999999 8888888876543
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.012 Score=50.92 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
++|.|+||+|||| .+|+++++.++..
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5789999999999 8999999776553
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.013 Score=49.80 Aligned_cols=26 Identities=8% Similarity=0.163 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .+|++++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3578999999999 7888888766554
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.018 Score=47.63 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+.||||+|||| ++|...+...+.+++.++
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4688999999999 888887777788876554
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.0097 Score=52.37 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
+++.||||+|||+ ++|.+++..++..+.-
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 4678999999999 8999999988877654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.0093 Score=49.20 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+++.|+||+|||| .+|..++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999 8888776
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.015 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+|+.++.+++..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 5689999999999 7898998766554
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.013 Score=48.35 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+++.++.+++..
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999 8888888766543
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.013 Score=48.79 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||| .+|+.++.+++..
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5689999999999 8899888665543
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.012 Score=47.67 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=25.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
+.+.|+||+|||| .+++.++++++. ..++.....|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~~~~g 40 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQKREG 40 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHHHHcC
Confidence 3578999999999 888888987764 3344433333
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.014 Score=49.86 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+|-||||+||+| .+|+..|++ +++.++++.
T Consensus 4 il~GpPGsGKgTqa~~La~~~g~~--~istGdllR 36 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEKGFV--HISTGDILR 36 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHHH
Confidence 567999999999 888888765 566666654
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.014 Score=49.54 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=20.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .+|++++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 3578999999999 7888888766543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.051 Score=45.58 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
.+.|++|+|||| .+|. +|.+++.
T Consensus 6 ~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 6 GLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999 6766 8877664
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.02 Score=51.33 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
.+++.||||+|||| .++.+++..++.|++-.+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 36789999999999 788777545667776444
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.016 Score=49.28 Aligned_cols=26 Identities=4% Similarity=-0.049 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
++|.|+||+|||| .+|+.++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 3578999999999 8888888766543
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.013 Score=49.99 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
++|.|+||+|||| .+|+.++..++.
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4688999999999 899999875543
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.019 Score=49.35 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
++|.|+||+|||| .+|+.++.+++ +..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~r 36 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIFR 36 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHHH
Confidence 3578999999999 88888887554 4445443
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.013 Score=58.06 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=38.5
Q ss_pred hHHHhhhcCCCchh---hhh---hcCCceEEEEechhh----hhhhcCCchHHHHHHHHHHH---------hhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVA---NQTSATFLRVVGSEL----IQKYLGDGPKLVRELFRVAE---------EHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA---~~~~~~~~~v~~s~l----~~~~~g~~~~~l~~~f~~a~---------~~~P~Ii~i 142 (317)
..++.|+||||||+ +++ ...+..+..+..+.- +....|.....+..++.... .....+|+|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 46789999999998 333 344666666644332 22223333444555442111 112479999
Q ss_pred cccccc
Q psy7780 143 DEIDAV 148 (317)
Q Consensus 143 DEiD~l 148 (317)
||+..+
T Consensus 286 DEasml 291 (574)
T 3e1s_A 286 DEVSMM 291 (574)
T ss_dssp CCGGGC
T ss_pred cCccCC
Confidence 998765
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.018 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+++.|+||+|||| .++..++..++.
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5689999999999 888888877665
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.066 Score=53.50 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..|++||||||||+
T Consensus 207 ~~lI~GPPGTGKT~ 220 (646)
T 4b3f_X 207 LAIIHGPPGTGKTT 220 (646)
T ss_dssp EEEEECCTTSCHHH
T ss_pred ceEEECCCCCCHHH
Confidence 35789999999998
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.69 E-value=0.022 Score=46.95 Aligned_cols=27 Identities=7% Similarity=-0.112 Sum_probs=22.3
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~ 109 (317)
+.+.|+||+|||| .+++.+ |++++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3578999999999 888877 88888765
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.026 Score=52.68 Aligned_cols=66 Identities=21% Similarity=0.386 Sum_probs=38.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEech-hh---------hhhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVGS-EL---------IQKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s-~l---------~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
+.+++.||+|+|||| +++... .-.++.+... ++ .+..+|.....++..+..+-...|.+|++|
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illd 216 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 216 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEEC
Confidence 357899999999999 555433 2233333211 10 000112222345566667777789999999
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 217 E~~ 219 (372)
T 2ewv_A 217 EMR 219 (372)
T ss_dssp CCC
T ss_pred CCC
Confidence 973
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.021 Score=47.56 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
.+.|+||+|||| .+|+.++..++.
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 578999999999 899999987664
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.027 Score=47.03 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~ 109 (317)
+.|.|+||+|||| .+++.+ |.+++.+.
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4688999999999 888888 57777665
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.025 Score=49.33 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||| .++++++.+++ +..+++..
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r~ 66 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLRE 66 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHHH
Confidence 5689999999999 78888876655 45555444
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.02 Score=49.32 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=25.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
+++-||||+||+| .+|+.+++ ..++..+++...+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~--~hIstGdllR~~i 68 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHF--NHLSSGDLLRAEV 68 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCC--EEECHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC--ceEcHHHHHHHHH
Confidence 4578999999999 78888875 4567777765433
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.028 Score=46.20 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=24.9
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
+.|.|++|+|||| .++..+ |.+++.+++-.+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4578999999999 777776 888988875443
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.016 Score=47.72 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcCC---ceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~ 114 (317)
+++.|+||+|||| .+++.++ .++..++..++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 4688999999999 7777665 345555554443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.3 Score=44.85 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCceEeeccccccccccc-CCCCCchhHHHHHHHHHHHH
Q psy7780 136 APSIVFIDEIDAVGTKRY-DSNSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~-~~~~~~~~~~~~~l~~ll~~ 173 (317)
.+.+|+||-+..+..... .+....-.++.+.|..+-.+
T Consensus 156 g~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAke 194 (338)
T 4a1f_A 156 ELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARE 194 (338)
T ss_dssp TEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 578999999998754321 11122234445555555555
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.032 Score=51.10 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
+++.||+|+|||+ .+|++++..++.++.-
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5689999999999 8999999999998754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.027 Score=45.92 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||| .++..+|..++.
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4688999999999 788877866554
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.12 Score=43.69 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=34.4
Q ss_pred HHHhhhcCCCchh----hhh--hcCCceEEEEech---h----hhhhhcCC-----chHHHHHHHHHHHhhCCceEeecc
Q psy7780 83 ELIQKYLGDGPKL----AVA--NQTSATFLRVVGS---E----LIQKYLGD-----GPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 83 ~Ll~G~pGtGKT~----aiA--~~~~~~~~~v~~s---~----l~~~~~g~-----~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
++++|+.|+|||+ ++. .+.+..++.+++. . +.+.. |. ......++++..+ ...+|+|||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhcc-CCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 5689999999997 322 2335666666533 1 11110 00 0011223333322 247999999
Q ss_pred cccc
Q psy7780 145 IDAV 148 (317)
Q Consensus 145 iD~l 148 (317)
+.-+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9877
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.074 Score=44.43 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHH
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFR 130 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~ 130 (317)
.+.|++|+|||| .+|. +|++++.. .++...........+..+++
T Consensus 5 ~i~G~~GsGKSTl~~~L~~-~g~~~i~~--d~~~~~~~~~~~~~~~~i~~ 51 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFRE-LGAYVLDA--DKLIHSFYRKGHPVYEEVVK 51 (204)
T ss_dssp EEEECTTSSHHHHHHHHHH-TTCEEEEH--HHHHHGGGSSSSHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHH-CCCEEEEc--cHHHHHHhcCCHHHHHHHHH
Confidence 478999999999 8888 88776654 34443322222233444443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.32 Score=46.34 Aligned_cols=28 Identities=11% Similarity=-0.070 Sum_probs=19.7
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~ 110 (317)
-.++.|+||+|||+ .+|.. |.++..++.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl 233 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 233 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC
Confidence 47889999999998 22322 667766654
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.041 Score=52.64 Aligned_cols=67 Identities=10% Similarity=0.194 Sum_probs=37.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---Cc-eEEEEechhh----hhhhcCCchHHHHHHHHHHH----------------h
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SA-TFLRVVGSEL----IQKYLGDGPKLVRELFRVAE----------------E 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~-~~~~v~~s~l----~~~~~g~~~~~l~~~f~~a~----------------~ 134 (317)
+.++.|+||||||+ +++..+ +. .++.+..+.. +....|.....++.++.... .
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 57899999999999 333333 33 4555544322 22223444444555443110 0
Q ss_pred hCCceEeecccccc
Q psy7780 135 HAPSIVFIDEIDAV 148 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l 148 (317)
....+|++||+..+
T Consensus 127 ~~~~~iiiDE~~~~ 140 (459)
T 3upu_A 127 AKCRVLICDEVSMY 140 (459)
T ss_dssp SSCSEEEESCGGGC
T ss_pred cCCCEEEEECchhC
Confidence 12468999999865
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=91.55 E-value=0.085 Score=48.26 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=42.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhh-----h---hcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQ-----K---YLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~-----~---~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
.+++.||+|+|||| +++.... ...+.+....... . ++..+....+..+..|-...|.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 46788999999999 6766653 2345555432111 0 1100233556677788888899999999753
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=91.50 E-value=0.35 Score=46.58 Aligned_cols=29 Identities=3% Similarity=-0.213 Sum_probs=19.4
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~ 110 (317)
..++.|+||+|||+ .+|...|.++..++.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56789999999998 222222556666654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.34 Score=43.79 Aligned_cols=14 Identities=21% Similarity=0.024 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.++.|+||+|||+
T Consensus 70 l~li~G~pG~GKTt 83 (315)
T 3bh0_A 70 FVLIAARPSMGKTA 83 (315)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 46889999999998
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.048 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||| .++..++++++.
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3578999999999 888888876654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.039 Score=46.27 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
+.+.|+||+|||| +++..+|..++
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4578999999999 88888876544
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.20 E-value=0.17 Score=41.53 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~ 114 (317)
+.+.|+||+|||| .+|..+ +..+..+++..+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 5689999999999 677665 3445556554443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.42 Score=46.39 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=25.2
Q ss_pred HHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHh
Q psy7780 127 ELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 127 ~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 174 (317)
..........|.+|+|||.-++.+.. +-+....+.+..++..+
T Consensus 129 ~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 129 RINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARL 171 (525)
T ss_dssp HHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHH
Confidence 33444455778999999987765431 12233445555666555
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.58 Score=45.37 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
....+.++..+....|.+|+||=+-.+-... . ..+....+.+++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~----~--~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV----S--NNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS----C--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC----C--hHHHHHHHHHHHHHHH
Confidence 3456667777778889999999666554321 1 1224455556665543
|
| >3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W | Back alignment and structure |
|---|
Probab=90.63 E-value=0.51 Score=33.37 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
.-...|++..+....+..+ ...+... +.---+..+..+|...|..+++.+|+.+|+..|++.++.+++
T Consensus 8 A~V~rI~K~~~p~~~is~~--A~~~i~~---~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~k~~ 75 (76)
T 3b0c_W 8 GTLRKIIKKHKPHLRLAAN--TDLLVHL---SFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILKKSR 75 (76)
T ss_dssp HHHHHHHHHHCTTCEECTT--HHHHHHH---HHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhCCCCccCHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 3445677755554444322 2333222 122236677888999999999999999999999999998765
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.052 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.||||+|||| .+|+.++++++.
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999 899999877654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=90.34 E-value=0.21 Score=45.26 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=36.2
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechh-----------hhhh---------hcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSE-----------LIQK---------YLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~-----------l~~~---------~~g~~~~~l~~~f~~a~~~ 135 (317)
.+++.|++|+|||| .+|.. .+..+..+++-. +... ..++....+...+..+...
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~ 185 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR 185 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc
Confidence 46789999999999 33332 244444443311 1000 0112222334456666777
Q ss_pred CCceEeecccc
Q psy7780 136 APSIVFIDEID 146 (317)
Q Consensus 136 ~P~Ii~iDEiD 146 (317)
.|.+|++|+.-
T Consensus 186 ~~dvvIiDtpg 196 (306)
T 1vma_A 186 NKDVVIIDTAG 196 (306)
T ss_dssp TCSEEEEEECC
T ss_pred CCCEEEEECCC
Confidence 88999999764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.055 Score=47.58 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+|..++.+|+..
T Consensus 51 i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5688999999999 8999999887764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=0.19 Score=41.91 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
+.+.||+|+|||| ++|..+ |...+.+++..+
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4588999999999 777776 555456665444
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=90.15 E-value=0.79 Score=43.95 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.+|.|+||+|||+
T Consensus 153 ~~~i~G~sGvGKTt 166 (473)
T 1sky_E 153 KIGLFGGAGVGKTV 166 (473)
T ss_dssp EEEEECCSSSCHHH
T ss_pred EEEEECCCCCCccH
Confidence 45788999999998
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.11 Score=48.96 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=21.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
.+++.|+||+|||| .+++.+++.++.
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 36689999999999 788888876554
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.078 Score=44.61 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|||||| .+++.+|++++..
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3578999999999 7787778877663
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.043 Score=45.85 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=17.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
+.+.|+||+|||| .+|+.++.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999 88887765
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=0.071 Score=44.43 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|+|||+ .+|..+|++++..
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 3478999999999 8899899877764
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=89.61 E-value=0.28 Score=40.69 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=11.9
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||.
T Consensus 40 ~~li~~~TGsGKT~ 53 (207)
T 2gxq_A 40 DLIGQARTGTGKTL 53 (207)
T ss_dssp CEEEECCTTSCHHH
T ss_pred CEEEECCCCChHHH
Confidence 35688999999998
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=0.02 Score=48.19 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=17.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
+.+.|+||+|||| .+++.++.
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999 77776654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=89.35 E-value=0.088 Score=44.56 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=19.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|+|||| .++. +|.+++..
T Consensus 7 I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4588999999999 7776 88776653
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.27 Score=47.88 Aligned_cols=34 Identities=6% Similarity=-0.041 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|..+ +.....++..++...
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 5789999999999 788777 445555665555443
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=89.01 E-value=0.084 Score=48.55 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=26.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
+++.||+|+|||+ .+|+.++..++..+.-+
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 5689999999999 99999999998877654
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=88.87 E-value=0.46 Score=41.23 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=33.2
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEech-------hhhhhhcCCc-----hHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGS-------ELIQKYLGDG-----PKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s-------~l~~~~~g~~-----~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
-++++|+.|+|||+ .-+...|..++.+... .+.+. .|.. -....++++.+. ...+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~~--~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEAL--GVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHT--TCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHhc--cCCEEEEE
Confidence 46789999999998 2233445555544321 11111 0110 001123455553 34799999
Q ss_pred ccccc
Q psy7780 144 EIDAV 148 (317)
Q Consensus 144 EiD~l 148 (317)
|+.-+
T Consensus 98 EaQF~ 102 (234)
T 2orv_A 98 EGQFF 102 (234)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99876
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.12 Score=45.12 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=23.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+.+.||+|+|||| .+|+.+|..++ +...+.
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~ 62 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIY 62 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC--CCCcee
Confidence 4588999999999 89999998765 444443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=88.75 E-value=0.51 Score=49.07 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=12.4
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
...+.||.|+||||
T Consensus 675 i~~ItGPNGaGKST 688 (918)
T 3thx_B 675 VMIITGPNMGGKSS 688 (918)
T ss_dssp EEEEESCCCHHHHH
T ss_pred EEEEECCCCCchHH
Confidence 46789999999999
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=88.68 E-value=0.49 Score=39.12 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=11.9
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||.
T Consensus 42 ~~lv~apTGsGKT~ 55 (206)
T 1vec_A 42 DILARAKNGTGKSG 55 (206)
T ss_dssp CEEEECCSSSTTHH
T ss_pred CEEEECCCCCchHH
Confidence 35688999999997
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=88.55 E-value=0.088 Score=46.89 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=18.8
Q ss_pred HHHhhhcCCCchh---hhhhc-CCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQ-TSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~-~~~~~~~ 107 (317)
+++.|+||+|||| .++.. .++.++.
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 4689999999999 77775 3655543
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=88.51 E-value=0.13 Score=43.37 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||+ .+|..+|++++..
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3578999999999 8889899877653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=88.49 E-value=0.066 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
+.+.||||+|||| .+|+.+|...+
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5688999999999 88888876543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.56 Score=42.07 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=33.5
Q ss_pred hHHHhhhcCCCchh---hhh----hcCCceEEEEechh-------hhhhh---------cCCchHHHHHHHHHHHhhCCc
Q psy7780 82 SELIQKYLGDGPKL---AVA----NQTSATFLRVVGSE-------LIQKY---------LGDGPKLVRELFRVAEEHAPS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA----~~~~~~~~~v~~s~-------l~~~~---------~g~~~~~l~~~f~~a~~~~P~ 138 (317)
.+.+.|++|+|||| .+| ...|..+..+++.. -+..| .......++..+..+ ..|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~~~d 184 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--SEYD 184 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--GGSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--cCCC
Confidence 56789999999999 333 23455555554321 01111 112233455555543 5578
Q ss_pred eEeec
Q psy7780 139 IVFID 143 (317)
Q Consensus 139 Ii~iD 143 (317)
+|+||
T Consensus 185 lvIiD 189 (296)
T 2px0_A 185 HVFVD 189 (296)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.18 Score=42.01 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||+
T Consensus 50 ~~li~~~tGsGKT~ 63 (216)
T 3b6e_A 50 NIIICLPTGSGKTR 63 (216)
T ss_dssp CEEEECSCHHHHHH
T ss_pred CEEEEcCCCCCHHH
Confidence 45789999999998
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.42 E-value=0.12 Score=42.78 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|+|||| .+|+. |++++..
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 4588999999999 78877 8776653
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=88.29 E-value=0.085 Score=45.83 Aligned_cols=30 Identities=7% Similarity=0.154 Sum_probs=22.8
Q ss_pred HhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 85 IQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+.|+||+|||| .+|+.++++++ +..+++..
T Consensus 13 ~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR~ 45 (230)
T 3gmt_A 13 LLGAPGAGKGTQANFIKEKFGIPQI--STGDMLRA 45 (230)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHHH
T ss_pred eECCCCCCHHHHHHHHHHHhCCCee--echHHHHH
Confidence 67999999999 78888887655 55555543
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=0.029 Score=47.18 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=16.5
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.+.|+||+|||| .+++.++
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999 7777654
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=0.19 Score=50.01 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=26.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
++|.|+||+|||| ++++.+ |.+++.+++-.+
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 6799999999999 888888 999999875444
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=87.86 E-value=0.18 Score=48.97 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=41.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechh-hhh---h--------hcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSE-LIQ---K--------YLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~-l~~---~--------~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
..++.||+|+|||| +++.... ...+.+.... +.- . ..+.....+.++...+..+.|.++++.|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgE 341 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGE 341 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCC
Confidence 46789999999999 6666663 3455554432 110 0 0112223455666667778899999998
Q ss_pred cc
Q psy7780 145 ID 146 (317)
Q Consensus 145 iD 146 (317)
+-
T Consensus 342 ir 343 (511)
T 2oap_1 342 VR 343 (511)
T ss_dssp CC
T ss_pred cC
Confidence 73
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=87.58 E-value=0.11 Score=47.23 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
+++.||+|+|||+ .+|+.++..++..+.-+
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 4688999999999 89999998888876543
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=87.56 E-value=0.13 Score=43.39 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=24.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+.+.|++|||||+ .+|+.+|++|+. .+++.
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D---~~~~~ 41 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS---KELLD 41 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC---HHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC---HHHHH
Confidence 3478999999999 899999999884 55543
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.52 E-value=0.14 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|++|+|||+ .+|..+|++++.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4588999999999 888889987654
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=0.15 Score=44.33 Aligned_cols=32 Identities=3% Similarity=-0.024 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCce--------EEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSAT--------FLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~--------~~~v~~s~l~ 114 (317)
+.+.|+||+|||| .++..++.+ ...++..++.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 5689999999999 788888876 3356665554
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=87.38 E-value=0.14 Score=46.74 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=24.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
+.+.||+|+|||+ .+|+.++..++..+.-+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 4578999999999 89999988887776543
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=87.31 E-value=0.13 Score=48.99 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.0
Q ss_pred HHHhhhcCCCchhhhh
Q psy7780 83 ELIQKYLGDGPKLAVA 98 (317)
Q Consensus 83 ~Ll~G~pGtGKT~aiA 98 (317)
.++.|+||||||+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL 179 (446)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4689999999999333
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=86.86 E-value=0.15 Score=42.69 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.3
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~ 107 (317)
+.+.|+||+|||| .++..+ ++.++.
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 4588999999999 777776 555544
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=86.66 E-value=0.018 Score=53.34 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
++|.|+||+|||+ ++|..++++|+.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4689999999999 899999888855
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=86.48 E-value=0.13 Score=45.74 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=20.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+.|+||+|||| .++ ++|++++. +..+
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~id--~D~~ 108 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYIID--SDHL 108 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEEEE--HHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcEEe--hhHH
Confidence 5689999999999 666 57876654 4444
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=0.91 Score=48.02 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCccccCCCcceeEEEeC----CCCHHHHHHHHHHHhc
Q psy7780 204 VIMATNRIETLDPALIRPGRIDRKIEFP----LPDEKTKRRIFNIHTS 247 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~~I~~~----~P~~~~r~~Il~~~l~ 247 (317)
||.||....... .+. +.-...+.++ .++.++-.++|..++.
T Consensus 268 ILVTTRd~~Va~-~l~--g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 268 ILLTTRFKQVTD-FLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp EEEECSCSHHHH-HHH--HHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred EEEeccChHHHH-hcC--CCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 777776543221 111 0101345555 6788999999988854
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.05 E-value=1.1 Score=48.46 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=16.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
...+.||.|+|||| ++.....
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 45688999999999 7776664
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=86.00 E-value=0.15 Score=46.95 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=24.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
+.+.||+|+|||+ .+|..++..++..+.-
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred EEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4688999999999 8999999877776543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=85.80 E-value=0.12 Score=43.59 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHhhhcCCCchh---hhhhcC----CceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT----SATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~ 114 (317)
+.+.|+||+|||| .++..+ |.+++.+++..+.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 5688999999999 777655 4557777754443
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=85.60 E-value=0.4 Score=46.49 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=19.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~ 110 (317)
.+++.|+||+|||| .+|..+ |..+..+++
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46788999999999 444332 555555554
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=85.33 E-value=0.14 Score=43.00 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=16.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.|.||||+|||| .++..++
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCc
Confidence 5688999999999 7777764
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=84.75 E-value=0.2 Score=43.78 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=19.5
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~ 106 (317)
+.|.|++|+|||| .+++.+ +..++
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 5689999999999 888888 54444
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=84.67 E-value=0.71 Score=41.43 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||+
T Consensus 46 ~~l~~~~TGsGKT~ 59 (367)
T 1hv8_A 46 NIVAQARTGSGKTA 59 (367)
T ss_dssp EEEEECCSSSSHHH
T ss_pred CEEEECCCCChHHH
Confidence 34678999999998
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=84.66 E-value=0.21 Score=41.09 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=20.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+.||||+|||| .++...+. .+.+++.++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4578999999999 77765543 244555444
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=84.63 E-value=3.5 Score=38.00 Aligned_cols=106 Identities=11% Similarity=0.159 Sum_probs=64.4
Q ss_pred CceEEEEechhhhhhhcCCch------HHHHHHHHHHHh--hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHH
Q psy7780 102 SATFLRVVGSELIQKYLGDGP------KLVRELFRVAEE--HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 102 ~~~~~~v~~s~l~~~~~g~~~------~~l~~~f~~a~~--~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 173 (317)
..+++.++.+.+.+.. +.. ..+..+|..+.. ..|.++++||+..+.... .......+..++.+
T Consensus 222 ~~~~vv~dl~~l~~~~--~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-------~~~~~~~l~~~~~~ 292 (392)
T 4ag6_A 222 DSDFIVFDVHDLQNAE--DQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVDPQ-------TPQAIAFLRDTSKR 292 (392)
T ss_dssp CSSEEEEECGGGTTSC--HHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCCTT-------CTHHHHHHHHHHHH
T ss_pred CCCEEEEEchhhhcCC--HHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhCcC-------chHHHHHHHHHHHH
Confidence 3567888888776421 000 123344555543 348999999999998532 12234556666666
Q ss_pred hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc--------cccCCCcceeEEEeCCCCHHHHHHHH
Q psy7780 174 LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP--------ALIRPGRIDRKIEFPLPDEKTKRRIF 242 (317)
Q Consensus 174 ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~--------al~rpgRf~~~I~~~~P~~~~r~~Il 242 (317)
...+ ++.++.+|.++..+.. +++. .++.+|.++.+. .++..+.
T Consensus 293 ~Rk~-----------------------g~~~~~~tQ~~~d~~~~~~~~~~~~il~--n~~~~i~l~~~~-~~~~~~~ 343 (392)
T 4ag6_A 293 IRKY-----------------------NGSLIVISQNVIDFLAPEVQRYGQALLD--NPTYKLLLAQGE-KDLEAIT 343 (392)
T ss_dssp GGGG-----------------------TCEEEEEESCGGGGGSTTTHHHHHHHHH--SCSEEEECSCCH-HHHHHHH
T ss_pred hhhh-----------------------CeEEEEEcCCHHHhhChhhHHHHHHHHH--hhhhhheeCCCh-hhHHHHH
Confidence 5443 3457778888777654 5666 677888888764 4444443
|
| >1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* | Back alignment and structure |
|---|
Probab=84.47 E-value=7.2 Score=37.59 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=36.7
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhh---CCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH---APSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~---~P~Ii~iDEiD 146 (317)
-+++.|++|+|||+ .+++..+..++.|-+ -+|+..+.+.++.+..... ..++++.--.|
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~------~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad 230 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQGQNVICVYV------AIGQKASSVAQVVTNFQERGAMEYTIVVAETAD 230 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE------EESCCHHHHHHHHHHTGGGTGGGSEEEEEECTT
T ss_pred EEEEecCCCCCccHHHHHHHHHhhcCCcEEEEE------EcCCCchHHHHHHHHHHhcCccccceEEEECCC
Confidence 56788999999998 677777655433221 1566666777766655442 24566654443
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=84.46 E-value=0.2 Score=42.61 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
-.|+++..+|..|++.-..+....=..++|.+-+.+.+.+++
T Consensus 154 ~pgrn~a~iiE~aa~n~~lk~~G~~~a~~f~~r~~~~i~~~~ 195 (205)
T 2qmh_A 154 KVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 195 (205)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 356777788887777665444444456788777777776543
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=84.19 E-value=0.35 Score=45.82 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech-hhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS-ELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s-~l~~~ 116 (317)
.++.++.|+|||. +++.+.+...+.+... +|...
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q 148 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHH
Confidence 5788999999999 4444556666666655 55543
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=84.10 E-value=0.31 Score=48.46 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=12.4
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||||||||+
T Consensus 197 ~~li~GppGTGKT~ 210 (624)
T 2gk6_A 197 LSLIQGPPGTGKTV 210 (624)
T ss_dssp EEEEECCTTSCHHH
T ss_pred CeEEECCCCCCHHH
Confidence 45789999999998
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=83.93 E-value=2.5 Score=44.03 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.|+||||
T Consensus 664 i~~ItGpNGsGKST 677 (934)
T 3thx_A 664 FHIITGPNMGGKST 677 (934)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999999
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=83.84 E-value=0.9 Score=42.12 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHhhhcCCCchh---hh-hhc---CCceEEEEech-hhhh
Q psy7780 83 ELIQKYLGDGPKL---AV-ANQ---TSATFLRVVGS-ELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---ai-A~~---~~~~~~~v~~s-~l~~ 115 (317)
.++..|+|+|||. ++ ... .+...+.+..+ .|..
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~ 66 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 4688999999999 22 222 24556666554 5543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=83.73 E-value=2.9 Score=42.78 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
...+.||.|+||||
T Consensus 609 i~~ItGpNGsGKST 622 (800)
T 1wb9_A 609 MLIITGPNMGGKST 622 (800)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCChHH
Confidence 56789999999999
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=83.13 E-value=0.27 Score=42.32 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|++|||||+ .+|+.+|++|+.
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4578999999999 899999999865
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=82.67 E-value=0.84 Score=43.28 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=35.0
Q ss_pred hHHHhhhcCCCchh---hhh----hcCCceEEEEechhh----h------hh------hc---CCc-hHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVA----NQTSATFLRVVGSEL----I------QK------YL---GDG-PKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA----~~~~~~~~~v~~s~l----~------~~------~~---g~~-~~~l~~~f~~a~~ 134 (317)
.+++.|++|+|||| .+| ..-|..+..+++--. . .. +. +.. ...++..+..++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~ 181 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh
Confidence 35677999999999 333 222666666554310 0 00 01 011 2233666777764
Q ss_pred hCCceEeeccc
Q psy7780 135 HAPSIVFIDEI 145 (317)
Q Consensus 135 ~~P~Ii~iDEi 145 (317)
..-.+++||=.
T Consensus 182 ~~~D~VIIDTp 192 (433)
T 2xxa_A 182 KFYDVLLVDTA 192 (433)
T ss_dssp TTCSEEEEECC
T ss_pred CCCCEEEEECC
Confidence 44578888753
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=82.62 E-value=0.2 Score=41.94 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=15.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
|+++.||+|+|||+ .+..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999 555444
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=82.43 E-value=0.92 Score=40.65 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=34.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEech----hh-------hhh-----h---cCCc-hHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGS----EL-------IQK-----Y---LGDG-PKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s----~l-------~~~-----~---~g~~-~~~l~~~f~~a~~~ 135 (317)
.+.+.|++|+|||| .+|..+ +..+..+++- .. ... + .+.. ...+++.++.++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~ 179 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE 179 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 45678999999998 333322 4455555432 00 000 0 1111 22345666666645
Q ss_pred CCceEeeccc
Q psy7780 136 APSIVFIDEI 145 (317)
Q Consensus 136 ~P~Ii~iDEi 145 (317)
...+|+||=.
T Consensus 180 ~~D~ViIDTp 189 (297)
T 1j8m_F 180 KMEIIIVDTA 189 (297)
T ss_dssp TCSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 5578888863
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=82.13 E-value=0.13 Score=43.10 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHhhhcCCCchh---hhhhcCC
Q psy7780 84 LIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~ 102 (317)
.|.|++|+|||| .++..++
T Consensus 4 ~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999 6776664
|
| >2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B | Back alignment and structure |
|---|
Probab=82.03 E-value=4.9 Score=38.70 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=19.2
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEE
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFL 106 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~ 106 (317)
-+++.|++|+|||+ .+++..+..++
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 192 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVI 192 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEE
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcE
Confidence 55788999999998 67777766543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=81.81 E-value=0.2 Score=43.18 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=19.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC--ceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS--ATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~--~~~~~v 108 (317)
+.|.|+||+|||| .+++.++ ..++..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 5689999999999 7777765 455443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=81.41 E-value=0.32 Score=40.28 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=15.4
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.+.||+|+|||| .++...
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999 666655
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=81.35 E-value=2.5 Score=35.22 Aligned_cols=13 Identities=31% Similarity=0.197 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.+|+|+|||.
T Consensus 54 ~li~~~TGsGKT~ 66 (220)
T 1t6n_A 54 VLCQAKSGMGKTA 66 (220)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCchhh
Confidence 5688999999998
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=81.08 E-value=0.84 Score=38.88 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.9
Q ss_pred HhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 85 IQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+.|..|||||+ .++. +|++++..+
T Consensus 14 lTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 14 LTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 67999999999 5555 898887643
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=80.97 E-value=0.5 Score=48.24 Aligned_cols=13 Identities=15% Similarity=0.159 Sum_probs=11.8
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||+|+|||+
T Consensus 112 vii~gpTGSGKTt 124 (773)
T 2xau_A 112 MVFVGETGSGKTT 124 (773)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5788999999999
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.87 E-value=3.8 Score=38.90 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|.|+|||.
T Consensus 22 ~l~~~~tGsGKT~ 34 (555)
T 3tbk_A 22 TIICAPTGCGKTF 34 (555)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEeCCCChHHH
Confidence 4688999999998
|
| >3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A | Back alignment and structure |
|---|
Probab=80.77 E-value=3.1 Score=40.09 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=17.7
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceE
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATF 105 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~ 105 (317)
-+++.|++|||||+ .+++..+..+
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv 191 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGI 191 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSC
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCc
Confidence 45778889999998 5666655543
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=80.43 E-value=0.36 Score=45.65 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=34.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEech-hhh-h----hhcC-CchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVGS-ELI-Q----KYLG-DGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s-~l~-~----~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
|.+++.||+|+|||| +++..+. -.++.+.-. +.. . ..++ ............+-...|.++++.|+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 357899999999999 6655543 233333211 110 0 0000 01112333444455678999999884
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=80.41 E-value=0.38 Score=40.47 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.+.||+|+|||| .++....
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999 7777664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 317 | ||||
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 6e-73 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 1e-70 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 3e-48 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 9e-32 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 1e-28 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 3e-20 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 6e-18 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 3e-10 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 2e-08 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 1e-04 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 0.004 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 223 bits (570), Expect = 6e-73
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 19/209 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+A + F + GS+ ++ ++G G VR++F A++ AP I+FIDEIDAVG +R
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ ++L ++DGF+ + VI ATNR + LD
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLD 164
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD + + +I +H R+ LA D++ + SGAD+ +
Sbjct: 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 224
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVL 304
EA L A R + V+ +F+K+K+ ++
Sbjct: 225 VNEAALFAARGNKRVVSMVEFEKAKDKIM 253
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 217 bits (555), Expect = 1e-70
Identities = 81/203 (39%), Positives = 113/203 (55%), Gaps = 19/203 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 61 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 120
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF+ + V+ ATNR + LD
Sbjct: 121 VGGGNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILD 161
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I PD K + +I IH LAEDV+L L GAD++ +
Sbjct: 162 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 221
Query: 276 CTEAGLMALRERRMKVTNEDFKK 298
EA L+A RE R K+T +D ++
Sbjct: 222 LNEAALLAAREGRRKITMKDLEE 244
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 160 bits (405), Expect = 3e-48
Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 19/208 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++F DE+D++ R +
Sbjct: 60 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 119
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
G R + ++L ++DG ++ +V +I ATNR + +D
Sbjct: 120 IGDGGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIID 160
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L + SGAD+ I
Sbjct: 161 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 220
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESV 303
C A +A+RE + ++
Sbjct: 221 CQRACKLAIRESIESEIRRERERQTNPS 248
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 118 bits (297), Expect = 9e-32
Identities = 24/213 (11%), Positives = 56/213 (26%), Gaps = 42/213 (19%)
Query: 95 LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
L A + V E + Y D V ++ R +H ++ ID + V
Sbjct: 143 LGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212
+ + G R +LL+ + VI + N
Sbjct: 201 NTTSGGIS--RGAFDLLSDIGAMA-------------------ASRGCVVIASLNPTSND 239
Query: 213 -TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGAD 271
+ + R + D + ++ +
Sbjct: 240 DKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGL----------------QRLTHT 283
Query: 272 IKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
++ E ++ + + + K+ ++V+
Sbjct: 284 LQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVI 316
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 108 bits (270), Expect = 1e-28
Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 25/215 (11%)
Query: 90 GDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
G G L AVAN+T A F + G E++ K G+ +R+ F AE++AP+I+FIDE+D
Sbjct: 48 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 107
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
A+ KR ++ V+ R +S++ + + + V V+
Sbjct: 108 AIAPKREKTHGE----------------------VERRIVSQLLTLMDGLKQRAHVIVMA 145
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 146 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 205
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301
GAD+ A+C+EA L A+R++ + ED E
Sbjct: 206 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAE 240
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 86.2 bits (212), Expect = 3e-20
Identities = 20/211 (9%), Positives = 59/211 (27%), Gaps = 19/211 (9%)
Query: 96 AVANQTSATFLRVVGSEL---IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152
A+ +T + + + +++ + ++ +
Sbjct: 51 AIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGY 110
Query: 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212
G R ++ L + + ++ +P + R E
Sbjct: 111 NLVIEGTGRTTD-VPIQTATMLQAKGYETK----------MYVMAVPKINSYLGTIERYE 159
Query: 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADI 272
T+ R K + + + +H + + + +E + S +
Sbjct: 160 TMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKL---YSSLET 216
Query: 273 KAICTEAGLMALRERRMKVTNEDFKKSKESV 303
+I + L R KV+ ++ + + E +
Sbjct: 217 PSISPKETLEKELNR--KVSGKEIQPTLERI 245
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 80.9 bits (199), Expect = 6e-18
Identities = 23/217 (10%), Positives = 47/217 (21%), Gaps = 42/217 (19%)
Query: 96 AVANQTSATFLRVVGSELIQKY-LGDGPKLVRELFRVAE------EHAPSIVFIDEIDAV 148
A+ L V + LG +F + PS I+ +D +
Sbjct: 173 ALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNL 232
Query: 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208
S + + I+
Sbjct: 233 RDYLDGSVKVNLEKKHLNKRTQIFPP-----------------------------GIVTM 263
Query: 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTK-RRIFNIHTSRMTLAEDVNLQELIMAKDDL 267
N R ++I+F D + + + L+M
Sbjct: 264 NE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII--QSGIALLLMLIWYR 318
Query: 268 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
A+ + + + ++K K +V
Sbjct: 319 PVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVA 355
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 57.3 bits (137), Expect = 3e-10
Identities = 25/197 (12%), Positives = 61/197 (30%), Gaps = 28/197 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
+A +++ F+++ + + + + ++++F A + S V +D+I+ +
Sbjct: 59 KIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 118
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
R + LL L + + +I T+R + L
Sbjct: 119 G----PRFSNLVLQALLVLLKKAPPQGRKLL------------------IIGTTSRKDVL 156
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED--VNLQELIMAKDDLSGADI 272
+ I P+ T ++ + + + + K G
Sbjct: 157 QEMEML-NAFSTTIHV--PNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKK 213
Query: 273 KAICTEAGLMALRERRM 289
+ E L E R+
Sbjct: 214 LLMLIEMSLQMDPEYRV 230
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 52.1 bits (123), Expect = 2e-08
Identities = 32/224 (14%), Positives = 59/224 (26%), Gaps = 28/224 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
++T+A F+ + G G F+ + +R
Sbjct: 66 LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 125
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+ D RL + L + +++ + L+
Sbjct: 126 MFLVLDDAFN---------LAPDILSTFIRLGQEADKLGAF----RIALVIVGHNDAVLN 172
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA------EDVNLQELIMAKDDLSG 269
I K TK +IF+I R + LQ + +
Sbjct: 173 NLDPSTRGIMGKYVIRFSP-YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 231
Query: 270 ADIKA--------ICTEAGLMALRERRMKVTNEDFKKSKESVLY 305
D I + A + R + ED +KS + VL+
Sbjct: 232 LDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 275
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLT 194
IVFIDEID + K S + RE +LL ++G ++ +
Sbjct: 114 EQNGIVFIDEIDKICKKGEYSGADVSRE--GVQRDLLPLVEGSTVSTKHGMV-----KTD 166
Query: 195 LIYLPGDVKVIMATNRIETLDPALIRP---GRIDRKIEFPLPDEKTKRRIFNIHTSRMT 250
I + +A+ + P+ + P GR+ ++E RI + +T
Sbjct: 167 HI-------LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 218
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 35.9 bits (81), Expect = 0.004
Identities = 25/204 (12%), Positives = 56/204 (27%), Gaps = 26/204 (12%)
Query: 106 LRVVGSELIQKYLGDGPKLVRELFR--VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREI 163
L V + + G + + + E+ +V +DE ++ + + E
Sbjct: 100 LIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA-----ED 154
Query: 164 QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGR 223
T+L + ++ D + + + + DV+ + + P +
Sbjct: 155 LYTLLRVHEEIPSRDGV----------NRIGFLLVASDVRALS---YMREKIPQVESQIG 201
Query: 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK------DDLSGADIKAICT 277
+ E + ELI D S
Sbjct: 202 FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALK 261
Query: 278 EAGLMALRERRMKVTNEDFKKSKE 301
A MA R ++ + +K+
Sbjct: 262 MACEMAEAMGRDSLSEDLVRKAVS 285
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.96 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.92 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.85 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.85 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.8 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.68 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.67 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.66 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.65 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.61 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.56 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.55 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.54 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.53 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.52 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.4 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.39 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.32 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.29 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.18 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.15 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.1 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.01 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 98.76 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.73 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 98.71 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 98.54 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.48 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.76 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.17 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.13 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.83 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.79 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.69 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.49 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.48 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.21 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 96.17 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.16 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.09 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.99 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.98 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.91 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.63 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.58 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.55 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.52 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.44 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.42 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.39 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.35 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.34 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.29 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.25 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.23 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.21 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.14 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.14 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.14 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.09 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.08 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.8 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.74 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.68 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.63 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.31 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.19 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.93 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 93.79 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.7 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.54 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.49 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.32 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.23 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.99 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.6 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.52 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.48 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.44 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.92 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.58 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.24 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 88.92 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 88.85 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.66 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.32 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 87.92 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.48 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.36 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 86.72 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 86.6 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 86.29 | |
| d1htaa_ | 68 | Archaeal histone {Archaeon Methanothermus fervidus | 86.19 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 85.56 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 84.91 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 83.39 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 83.03 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 82.71 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 82.34 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 81.97 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 81.56 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 81.55 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 80.88 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 80.48 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 80.42 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 80.08 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-49 Score=355.54 Aligned_cols=205 Identities=37% Similarity=0.657 Sum_probs=195.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|||||||||||+ ++|++++.++++++++++.++|+|++++.++.+|+.|++++||||||||+|.+++.|+....+
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~ 126 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 126 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC
T ss_pred eEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCC
Confidence 58999999999999 999999999999999999999999999999999999999999999999999999998766666
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+|+.++|++.+. .+|+||+|||+|+.||++++||||||++|+|++|+.++|
T Consensus 127 ~~~~~~~~~~~ll~~~d~~~~~-------------------~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R 187 (256)
T d1lv7a_ 127 GHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (256)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSS-------------------SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCCC-------------------CCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHH
Confidence 6666778899999999999776 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.+||+.++++.++..++++..+++.|+|||++||.++|++|++.|+++++..|+.+||++|+++++.
T Consensus 188 ~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~~~~~i~~~d~~~Al~rv~~ 254 (256)
T d1lv7a_ 188 EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (256)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 9999999999998899999999999999999999999999999999999999999999999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2e-48 Score=347.66 Aligned_cols=200 Identities=42% Similarity=0.669 Sum_probs=183.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++++++.++++++.++|+|++++.++++|+.|+.++||||||||+|.++.+|+....+
T Consensus 44 giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~ 123 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 123 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--------
T ss_pred eEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCC
Confidence 47999999999999 999999999999999999999999999999999999999999999999999999998766666
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+|+.+||++... .+|+||+|||+|+.||++++|||||+++|+|++|+.++|
T Consensus 124 ~~~~~~~~~~~ll~~~d~~~~~-------------------~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR 184 (247)
T d1ixza_ 124 GNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 184 (247)
T ss_dssp -CHHHHHHHHHHHHHHHTCCTT-------------------CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCCC-------------------CCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHH
Confidence 6667788999999999998766 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
.+||+.++.+.+...+.+++.+++.|+||+++||.++|++|++.|+++++..|+++||++|+
T Consensus 185 ~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 185 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 246 (247)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHhh
Confidence 99999999998888999999999999999999999999999999999999999999999985
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4e-45 Score=328.39 Aligned_cols=198 Identities=39% Similarity=0.634 Sum_probs=181.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|||||||||||+ ++|++++.+|+.++++++.++|.|+++..++.+|+.|+.++||||||||+|.++++|....++
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~ 119 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 119 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCT
T ss_pred eeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCc
Confidence 58999999999999 999999999999999999999999999999999999999999999999999999988543332
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
. ..+++..++..+++.... .+|+||+|||+++.||++++||||||++|+|++|+.++|
T Consensus 120 ~---~~~~~~~~~~~~~~~~~~-------------------~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R 177 (258)
T d1e32a2 120 V---ERRIVSQLLTLMDGLKQR-------------------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177 (258)
T ss_dssp T---HHHHHHHHHHHHHTCCCS-------------------SCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHH
T ss_pred h---HHHHHHHhcccccccccc-------------------CCccEEEeCCCccccchhhhhcccccceeECCCCCHHHH
Confidence 2 346677888888887766 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC-----------------CCcCHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR-----------------MKVTNEDFKKSKE 301 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~-----------------~~it~~d~~~al~ 301 (317)
.+||+.++++.++..+.++..+++.|+||||+||.++|++|++.|++++. ..|+++||++|+.
T Consensus 178 ~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~ 257 (258)
T d1e32a2 178 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 257 (258)
T ss_dssp HHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHT
T ss_pred HHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhC
Confidence 99999999999888899999999999999999999999999999987642 3589999999985
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-43 Score=317.94 Aligned_cols=187 Identities=36% Similarity=0.633 Sum_probs=168.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|||||||||||+ ++|++++++|++++++++.+.|.|+++..++.+|..|+.++||||||||+|.++.+++....+
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~ 122 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 122 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCT
T ss_pred eEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCC
Confidence 58999999999999 999999999999999999999999999999999999999999999999999999988666566
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..++++.++.+++++... .+|+||+|||+++.||++++|||||+++|+|++|+.++|
T Consensus 123 ~~~~~~~~~~~ll~~l~~~~~~-------------------~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R 183 (265)
T d1r7ra3 123 GGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 183 (265)
T ss_dssp THHHHHHHHHHHHHTCC-------------------------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHH
T ss_pred CcHHHHHHHHHHHHHhhCcCCC-------------------CCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHH
Confidence 6667778899999999998766 779999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
.+||+.++++.....++++..++++|+|||++||.++|++|...|+++.
T Consensus 184 ~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~ 232 (265)
T d1r7ra3 184 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 232 (265)
T ss_dssp HHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999999999999999999999999999998765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.96 E-value=1.2e-34 Score=265.37 Aligned_cols=186 Identities=12% Similarity=0.148 Sum_probs=138.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSN 156 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~ 156 (317)
..||+||||||||+ ++|.+++ .+|+.+++++++++|+|++++.++++|+.|++ ||||||||||+++++|+...
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~ilf~DEid~~~~~r~~~~ 202 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVIDSLKNVIGAAGGNT 202 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSEEEEECCTTTC-------
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccEEEeehhhhhccccccCC
Confidence 45679999999999 9999976 78999999999999999999999999999985 79999999999999985433
Q ss_pred CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---CCCCccccCCCcceeEEEeCCC
Q psy7780 157 SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---ETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 157 ~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---~~Ld~al~rpgRf~~~I~~~~P 233 (317)
.. ....++++++|.+|||+... .+|+||+|||+. +.||++++|||||++.+++++|
T Consensus 203 ~~--~~~~r~v~~lL~e~dg~~~~-------------------~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~p 261 (321)
T d1w44a_ 203 TS--GGISRGAFDLLSDIGAMAAS-------------------RGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVIST 261 (321)
T ss_dssp ------CCHHHHHHHHHHHHHHHH-------------------HTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEEC
T ss_pred CC--CcchhhhhhhhhhccccccC-------------------CCeEEEEeCCCcccccchhhhhhccCcccceeecCCC
Confidence 32 22347999999999999876 789999999962 3366677899999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
+.++|.+|++.+...+.. ++.++.+.+++++..+.+..+..+.+.+..+|++.++..
T Consensus 262 d~~~r~~il~~~~~~~~~----------------~~~~l~~~~~~~a~la~~~~~~~~~~~~~~~Ai~~via~ 318 (321)
T d1w44a_ 262 DVDGEWQVLTRTGEGLQR----------------LTHTLQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVIKN 318 (321)
T ss_dssp SSTTEEEEEEECBTTCCE----------------EEEEEEEEECGGGCEEECCC------CEECHHHHHHHHH
T ss_pred ChHHHHHHHHHhccCccc----------------cchhhhhccCHHHHHHHHhccccchhhhHHHHHHHHHcC
Confidence 999999999888766542 223333344444444445555666677777777777653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.92 E-value=4e-27 Score=208.89 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=121.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
.+||+||||||||+ ++|++++++|+.+++++++.++.+.. .+.++.+|+.|++++||||||||||.+++.+.....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~ 121 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR 121 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTB
T ss_pred EEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccc
Confidence 47999999999999 99999999999999998877666554 467999999999999999999999999887643211
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
. ..+++.+++..+++..... .+|+||+|||+++.||++.++ +||+.+|++|.+. +
T Consensus 122 -~---~~~~~~~ll~~l~~~~~~~------------------~~v~vi~tTn~~~~ld~~~~~-~rF~~~i~~P~~~--~ 176 (246)
T d1d2na_ 122 -F---SNLVLQALLVLLKKAPPQG------------------RKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIA--T 176 (246)
T ss_dssp -C---CHHHHHHHHHHTTCCCSTT------------------CEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEE--E
T ss_pred -h---hHHHHHHHHHHhcCCCccc------------------cceeeeeccCChhhccchhhc-CccceEEecCCch--h
Confidence 1 2356678888888875441 579999999999999976443 4999999996553 3
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCC
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 268 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s 268 (317)
|.+|++.+.....+ .+.+...+++.+.|.+
T Consensus 177 r~~il~~l~~~~~~-~~~~~~~i~~~~~g~~ 206 (246)
T d1d2na_ 177 GEQLLEALELLGNF-KDKERTTIAQQVKGKK 206 (246)
T ss_dssp HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhccCC-ChHHHHHHHHHcCCCc
Confidence 34444433222222 3345677888877754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=2.6e-22 Score=183.28 Aligned_cols=151 Identities=22% Similarity=0.273 Sum_probs=119.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh--hhcCCchHHHHHHHHHHHh-----hCCceEeecccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ--KYLGDGPKLVRELFRVAEE-----HAPSIVFIDEIDAVGT 150 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~--~~~g~~~~~l~~~f~~a~~-----~~P~Ii~iDEiD~l~~ 150 (317)
+..||+||||||||+ ++|++++.+|+.++++++.. .|.|++++.++.+|..|.. .+||||||||||++++
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~ 129 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK 129 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred ceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhh
Confidence 367999999999999 99999999999999999984 4889999999999999864 3589999999999998
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE----cCCCCCCCccccCCCccee
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA----TNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t----TN~~~~Ld~al~rpgRf~~ 226 (317)
++.+. ..+-.-..++.+||..+||......+. .....++++|++ +|+++.++|++++ ||+.
T Consensus 130 ~~~~~--~~~~~~~gv~~~LL~~~dg~~~~~~~~-----------~i~~s~ilfi~~ga~~~~~~~~~~p~l~~--R~~~ 194 (309)
T d1ofha_ 130 KGEYS--GADVSREGVQRDLLPLVEGSTVSTKHG-----------MVKTDHILFIASGAFQVARPSDLIPELQG--RLPI 194 (309)
T ss_dssp CSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTE-----------EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCE
T ss_pred hccCc--ccchhhhHHHHHhhHHhcCCEEecCCe-----------EEEccceeEEeccchhhcCcccchhhhhh--hhhe
Confidence 77432 222222346778999999864331110 001146777876 6788889999987 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy7780 227 KIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l 246 (317)
++.++.|+.+++.+|++.+.
T Consensus 195 ~i~~~~~~~~~~~~Il~~~~ 214 (309)
T d1ofha_ 195 RVELTALSAADFERILTEPH 214 (309)
T ss_dssp EEECCCCCHHHHHHHHHSST
T ss_pred eeeccCCCHHHHHHHHHHHH
Confidence 99999999999999987653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.3e-21 Score=169.67 Aligned_cols=193 Identities=15% Similarity=0.109 Sum_probs=139.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.|||||||||||+ ++|++++++++.+++++... ...+..++.... ..+++|+||+|.+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~ide~~~~~~~~------ 102 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDVLFIDEIHRLNKAV------ 102 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHHCC--TTCEEEEETGGGCCHHH------
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc------HHHHHHHHHhhc--cCCchHHHHHHHhhhHH------
Confidence 57999999999999 99999999999999877543 345555555433 35899999999985432
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhccccc-ccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL-IYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~-~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
+..+...++........ .... .... .....++++|++||++..+++++++ ||...+.++.|+.++
T Consensus 103 -----~~~l~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~I~at~~~~~~~~~~~~--r~~~~~~~~~~~~~~ 168 (238)
T d1in4a2 103 -----EELLYSAIEDFQIDIMI-GKGP------SAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKE 168 (238)
T ss_dssp -----HHHHHHHHHTSCCCC----------------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHH
T ss_pred -----Hhhcccceeeeeeeeee-cCcc------cccccccCCCCeEEEEecCCCcccccccee--eeeEEEEecCCCHHH
Confidence 23333333321100000 0000 0000 0012578999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCCc-CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 238 KRRIFNIHTSRMTLAE-DVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~-~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
+..+++.......... +..+..+++.+.| +++.+.++++.+...+...+...||.+++.++++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~~~~~~~~it~~~~~~al~~l 234 (238)
T d1in4a2 169 LKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 234 (238)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Confidence 9999998877665542 3347778877766 899999999998888888888889999999998764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=6.5e-20 Score=160.46 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=134.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|+++++++..++++.... ............ ...+|++|||+|.+....
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~i~~iDe~~~~~~~~------ 103 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANSL-EEGDILFIDEIHRLSRQA------ 103 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHTTC-CTTCEEEEETGGGCCHHH------
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcccc------chhhHHHHHhhc-cCCCeeeeecccccchhH------
Confidence 67999999999999 99999999999999877532 112222221111 124799999999885432
Q ss_pred chhHHHHHHHHHHHHh--cCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQL--DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~l--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
+..+...++.. +...... .........+.++.+|++||++...+++.++ |+...+.+..|+.+
T Consensus 104 -----~~~l~~~~e~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~ 168 (239)
T d1ixsb2 104 -----EEHLYPAMEDFVMDIVIGQG--------PAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPE 168 (239)
T ss_dssp -----HHHHHHHHHHSEEEEECSCT--------TCCCEEEEECCCCEEEEEESCCSSCSCGGGG--GCSEEEECCCCCHH
T ss_pred -----HHhhhhhhhhhhhhhhhccc--------hhhhhcccCCCCEEEEeeccCcccccchhhc--ccceeeEeeccChh
Confidence 33333333321 1110000 0000111122578899999999998888888 77789999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++..+++..+.+..+. ....++.++..+.| +.+...++++.+...|...+...||.+++.+++..+
T Consensus 169 ~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~~~~a~~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 169 ELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 235 (239)
T ss_dssp HHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHTTSCCSCBCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhh
Confidence 9999999887765544 22357788888888 778888888888877777778899999999998754
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.72 E-value=2.2e-21 Score=180.49 Aligned_cols=191 Identities=14% Similarity=0.024 Sum_probs=127.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh-cCCchHHHHHHHHHHH------hhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY-LGDGPKLVRELFRVAE------EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~-~g~~~~~l~~~f~~a~------~~~P~Ii~iDEiD~l~~~ 151 (317)
..||+||||||||+ ++|++++.+|+++++++..+.+ ++........+|+.|. ...|+++++||+|.+...
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~ 235 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDY 235 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhcccc
Confidence 47899999999999 9999999999999999876654 3443333333333331 233455555555554332
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeC
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 231 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~ 231 (317)
+||......... + ...... ....+|+|||. ++.+++|||||++.|++.
T Consensus 236 ----------------------~dg~~~~~~~~~-~----~~~~~~--~~~p~i~ttN~---~~~~~~r~~Rf~~~i~~~ 283 (362)
T d1svma_ 236 ----------------------LDGSVKVNLEKK-H----LNKRTQ--IFPPGIVTMNE---YSVPKTLQARFVKQIDFR 283 (362)
T ss_dssp ----------------------HHCSSCEEECCS-S----SCCEEE--CCCCEEEEECS---CCCCHHHHTTEEEEEECC
T ss_pred ----------------------cCCcchhhhhhh-h----hchhhh--ccCCceeeccc---ccccccccccCceEEeec
Confidence 233211000000 0 000000 11137889995 567788999999999999
Q ss_pred CCCHHHHH-HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 232 LPDEKTKR-RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 232 ~P~~~~r~-~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.|....|. ++++.++++..+. .+.+.++..+.+++++|+.++++++...+.++....++...|.++.+.+..+
T Consensus 284 ~~~~~~~~~~~l~~i~~~~~l~--~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~G 357 (362)
T d1svma_ 284 PKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMG 357 (362)
T ss_dssp CCHHHHHHHHTCTHHHHTTCTT--CHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhcccCCC--CCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHcC
Confidence 98776664 5566666665543 4466788888999999999999999888877777788999999888887654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.68 E-value=1.5e-16 Score=140.60 Aligned_cols=195 Identities=13% Similarity=0.042 Sum_probs=135.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC---------CceEEEEechhhhhh----------------hcCCchHHHHHHHHHH-
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---------SATFLRVVGSELIQK----------------YLGDGPKLVRELFRVA- 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~l~~~----------------~~g~~~~~l~~~f~~a- 132 (317)
..+|+||||||||+ ++|+++ ...+..+++...... +.|.....+...+...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 127 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL 127 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHH
Confidence 46789999999999 777765 356666766553221 2244444444444433
Q ss_pred H-hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 133 E-EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 133 ~-~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
. ...+.++++||+|.+.... ....+....+..+++.+...... ..+.+|+.+|.+
T Consensus 128 ~~~~~~~~~iide~d~l~~~~-----~~~~~~~~~l~~l~~~l~~~~~~-------------------~~~~~i~i~~~~ 183 (287)
T d1w5sa2 128 YVENHYLLVILDEFQSMLSSP-----RIAAEDLYTLLRVHEEIPSRDGV-------------------NRIGFLLVASDV 183 (287)
T ss_dssp HHHTCEEEEEEESTHHHHSCT-----TSCHHHHHHHHTHHHHSCCTTSC-------------------CBEEEEEEEEET
T ss_pred HhccCccccceeEEEEecccc-----ccchhHHHHHHHHHHhcchhhcc-------------------cceeEEeecccH
Confidence 3 2345688999999997654 22334555666677766665544 567778777766
Q ss_pred CC------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc---CCCHHHHHHhCC-----CCCHHHHHHHHH
Q psy7780 212 ET------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE---DVNLQELIMAKD-----DLSGADIKAICT 277 (317)
Q Consensus 212 ~~------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~---~~~~~~ia~~t~-----g~s~~dl~~l~~ 277 (317)
+. .++++.+ ||...++|++|+.++..+|++..++...... +..++.+++.+. .-.++...++|+
T Consensus 184 ~~~~~~~~~~~~~~~--r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~ 261 (287)
T d1w5sa2 184 RALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALK 261 (287)
T ss_dssp HHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHH
T ss_pred HHHHHHHhhccchhc--ccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHH
Confidence 54 3467788 8999999999999999999998875322221 223666776553 236788889999
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 278 EAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 278 ~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
+|...|..+++..|+.+|+++|+++
T Consensus 262 ~a~~~A~~~~~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 262 MACEMAEAMGRDSLSEDLVRKAVSE 286 (287)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHhc
Confidence 9999999999999999999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.67 E-value=1.9e-17 Score=143.72 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=119.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhhcCCchHHHHHHHHHH------HhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVA------EEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a------~~~~P~Ii~iDEiD~ 147 (317)
+.||+||||+|||+ ++|+++. ..++++++++..+. ..++..+... ....+.|+++||+|.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~------~~~~~~~~~~~~~~~~~~~~~~iilide~d~ 120 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADA 120 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccch------hHHHHHHHHHHhhhhccCCCceEEeehhhhh
Confidence 57999999999999 8888764 57899998875442 1222222222 233467999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+.... +..+..++.. .. .++.+|++||.+..+++++++ ||. .
T Consensus 121 ~~~~~-----------~~~ll~~l~~---~~---------------------~~~~~i~~~n~~~~i~~~l~s--R~~-~ 162 (231)
T d1iqpa2 121 LTQDA-----------QQALRRTMEM---FS---------------------SNVRFILSCNYSSKIIEPIQS--RCA-I 162 (231)
T ss_dssp SCHHH-----------HHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHH--TEE-E
T ss_pred cchhH-----------HHHHhhhccc---CC---------------------cceEEEeccCChhhchHhHhC--ccc-c
Confidence 75432 3344444443 11 567899999999999999999 995 7
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 299 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~a 299 (317)
+.+++|+.++...+++..+.+.++. ++..++.+++.+.| +.|++-++++.|. .....++.+++...
T Consensus 163 i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g-diR~ai~~Lq~~~-----~~~~~it~e~v~~v 229 (231)
T d1iqpa2 163 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA-----ALDKKITDENVFMV 229 (231)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH-----TTCSEECHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-----HcCCCcCHHHHHhh
Confidence 9999999999999999998876654 34457888888766 5555555555432 33567888888553
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=9.2e-17 Score=140.82 Aligned_cols=176 Identities=16% Similarity=0.215 Sum_probs=111.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHH---------H---HH--HHhhCCceEeecc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVREL---------F---RV--AEEHAPSIVFIDE 144 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~---------f---~~--a~~~~P~Ii~iDE 144 (317)
+.||+||||||||+ ++|++++++++.+++++..+.+.... .++.. | .. .....+.++++||
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide 131 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNA--GVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDE 131 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHH--TGGGGTTBCCSTTTTTC----CCSSTTSEEEEECS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchhhHHHHH--HHHHHhhcchhhhhhhhhhhcccccccceEEEeee
Confidence 57999999999999 99999999999999987654321100 00000 0 00 0122357999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRI 224 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf 224 (317)
+|.+.... +..+..+++...... ..++++++++....++ .++| +
T Consensus 132 ~~~~~~~~-----------~~~~~~~~~~~~~~~---------------------~~ii~i~~~~~~~~~~-~l~~---~ 175 (253)
T d1sxja2 132 VDGMSGGD-----------RGGVGQLAQFCRKTS---------------------TPLILICNERNLPKMR-PFDR---V 175 (253)
T ss_dssp GGGCCTTS-----------TTHHHHHHHHHHHCS---------------------SCEEEEESCTTSSTTG-GGTT---T
T ss_pred ccccccch-----------hhhhHHHhhhhcccc---------------------cccccccccccccccc-cccc---e
Confidence 99986443 112223333222211 3455555555555565 4544 4
Q ss_pred eeEEEeCCCCHHHHHHHHHHHhcC--CCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 225 DRKIEFPLPDEKTKRRIFNIHTSR--MTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 225 ~~~I~~~~P~~~~r~~Il~~~l~~--~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
...|+|++|+.+++..+++..+.+ ..++ +..++.++..+.| |++.+++. +.+.......++.+++.+..+.
T Consensus 176 ~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~-~~~l~~i~~~s~G----DiR~ai~~--L~~~~~~~~~i~~~~~~~~~~~ 248 (253)
T d1sxja2 176 CLDIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDRLIQTTRG----DIRQVINL--LSTISTTTKTINHENINEISKA 248 (253)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCCC-TTHHHHHHHHTTT----CHHHHHHH--HTHHHHHSSCCCTTHHHHHHHH
T ss_pred eeeeeccccchhHHHHHHHHHHHHhCCCCC-HHHHHHHHHhCCC----cHHHHHHH--HHHHHHcCCCCCHHHHHHHhch
Confidence 579999999999999999998754 4443 3457889988765 77766653 2333344567888888766543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.8e-18 Score=146.59 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=118.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----eEEEEechhhhhhhcCCchHHHHHHHHHHHh------hCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----TFLRVVGSELIQKYLGDGPKLVRELFRVAEE------HAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~------~~P~Ii~iDEiD~ 147 (317)
+.||+||||||||+ ++|++++. .++..++++..+. ......+..... ....||+|||+|.
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~ 110 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI------DVVRNQIKDFASTRQIFSKGFKLIILDEADA 110 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred eEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCe------eeeecchhhccccccccCCCeEEEEEecccc
Confidence 47899999999999 88888642 3566666653321 112222222211 2235999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... .+..+...++. .. ..+.++++||.+..+++++++ ||. .
T Consensus 111 ~~~~-----------~~~~Ll~~le~---~~---------------------~~~~~~~~~~~~~~i~~~i~s--r~~-~ 152 (227)
T d1sxjc2 111 MTNA-----------AQNALRRVIER---YT---------------------KNTRFCVLANYAHKLTPALLS--QCT-R 152 (227)
T ss_dssp SCHH-----------HHHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred chhh-----------HHHHHHHHhhh---cc---------------------cceeeccccCcHHHhHHHHHH--HHh-h
Confidence 7432 23444444443 21 567899999999999999999 984 8
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+.|+.|+.++...++...+.+.++. ++..++.+++.+.| +.|..-++++.+...+...+...|+.+++.+++
T Consensus 153 i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G-d~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~ 225 (227)
T d1sxjc2 153 FRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 225 (227)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred hccccccccccccccccccccccccCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCCCCCeeCHHHHHHHh
Confidence 8999999999999999887665544 34457888888776 555555555554444444456789999998875
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=8e-16 Score=134.49 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=115.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~ 135 (317)
.||+||||+|||+ ++|++++. .++.++.++. .....++++++.+...
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~i~~ir~~~~~~~~~ 110 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYA 110 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTCS------SSHHHHHHHHHSCCCS
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCeEEEecchhc------CCHHHHHHHHHHHHhc
Confidence 7899999999998 66666532 2455554431 1234566666665322
Q ss_pred ----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 ----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
...|++|||+|.+... .+..|... |+... .++.+|++||++
T Consensus 111 ~~~~~~kviiIde~d~l~~~-----------~q~~Llk~---lE~~~---------------------~~~~~il~tn~~ 155 (239)
T d1njfa_ 111 PARGRFKVYLIDEVHMLSRH-----------SFNALLKT---LEEPP---------------------EHVKFLLATTDP 155 (239)
T ss_dssp CSSSSSEEEEEETGGGSCHH-----------HHHHHHHH---HHSCC---------------------TTEEEEEEESCG
T ss_pred cccCCCEEEEEECcccCCHH-----------HHHHHHHH---HhcCC---------------------CCeEEEEEcCCc
Confidence 2359999999998321 23444444 44322 567899999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMK 290 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~ 290 (317)
+.+.+++++ || ..+.|+.|+.++..+++.......+.. ++..++.++..+.| +.+..-++++. +...+...
T Consensus 156 ~~i~~~i~S--Rc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G-d~R~ain~l~~----~~~~~~~~ 227 (239)
T d1njfa_ 156 QKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQ----AIASGDGQ 227 (239)
T ss_dssp GGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT-CHHHHHHHHHH----HHHHTTTS
T ss_pred cccChhHhh--hh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC-CHHHHHHHHHH----HHHhCCCC
Confidence 999999999 99 489999999999988888776543322 23347778888776 56665555554 44556678
Q ss_pred cCHHHHHHHH
Q psy7780 291 VTNEDFKKSK 300 (317)
Q Consensus 291 it~~d~~~al 300 (317)
|+.+++.+++
T Consensus 228 I~~~~v~~~l 237 (239)
T d1njfa_ 228 VSTQAVSAML 237 (239)
T ss_dssp BCHHHHHHHH
T ss_pred cCHHHHHHHh
Confidence 9999997765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=6.3e-15 Score=127.51 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=120.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC------CceEEEEechhhhhhhcCCchHHHHHHH------------HHHHhhCCceE
Q psy7780 82 SELIQKYLGDGPKL---AVANQT------SATFLRVVGSELIQKYLGDGPKLVRELF------------RVAEEHAPSIV 140 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~------~~~~~~v~~s~l~~~~~g~~~~~l~~~f------------~~a~~~~P~Ii 140 (317)
+.+|+||||||||+ ++|+++ ....+.++++....... ....++... .........||
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 112 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI--VREKVKNFARLTVSKPSKHDLENYPCPPYKII 112 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH--HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEE
T ss_pred eEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchH--HHHHHHHHhhhhhhhhhHHHHhhccccCceEE
Confidence 36899999999999 888886 45667776654322100 001111111 00111122489
Q ss_pred eecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccC
Q psy7780 141 FIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIR 220 (317)
Q Consensus 141 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~r 220 (317)
+|||+|.+... ....+..++.... ....+|.++|..+.+.+++++
T Consensus 113 iiDe~d~l~~~-----------~~~~l~~~~~~~~------------------------~~~~~i~~~~~~~~~~~~l~s 157 (237)
T d1sxjd2 113 ILDEADSMTAD-----------AQSALRRTMETYS------------------------GVTRFCLICNYVTRIIDPLAS 157 (237)
T ss_dssp EETTGGGSCHH-----------HHHHHHHHHHHTT------------------------TTEEEEEEESCGGGSCHHHHH
T ss_pred EEecccccCHH-----------HHHHHhhcccccc------------------------ccccccccccccccccccccc
Confidence 99999988543 2334444444311 456688899999999999999
Q ss_pred CCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh-cCCCcCHHHHHH
Q psy7780 221 PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE-RRMKVTNEDFKK 298 (317)
Q Consensus 221 pgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~-~~~~it~~d~~~ 298 (317)
|| ..+.|++|+.++...+++..+.+..+. ++..++.+++.+.| +.|..-++++.|+..+... ....||.+++++
T Consensus 158 --r~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g-d~R~ai~~L~~~~~~~~~~~~~~~It~~~i~e 233 (237)
T d1sxjd2 158 --QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEE 233 (237)
T ss_dssp --HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHH
T ss_pred --hh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhcCCCCccCHHHHHH
Confidence 99 589999999999999999988765543 33447888888877 6666667777777666543 356799999987
Q ss_pred HH
Q psy7780 299 SK 300 (317)
Q Consensus 299 al 300 (317)
++
T Consensus 234 ~~ 235 (237)
T d1sxjd2 234 LA 235 (237)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=2.2e-15 Score=130.07 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=115.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----eEEEEechhhhhhhcCCchHHHHHHHHHHHh-------hCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----TFLRVVGSELIQKYLGDGPKLVRELFRVAEE-------HAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~-------~~P~Ii~iDEiD 146 (317)
+.||+||||||||+ ++|++++. .++.+++++..+ ...++..+..... ....++++||+|
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d 111 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 111 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCC------ceehhhHHHHHHHhhccCCCcceEEEEEeccc
Confidence 57899999999999 78887763 578888776432 2333333333221 124599999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+.... +..+...++. .. ....++.+||..+.+.+++++ ||.
T Consensus 112 ~~~~~~-----------~~~ll~~~e~---~~---------------------~~~~~i~~~~~~~~i~~~l~s--r~~- 153 (224)
T d1sxjb2 112 SMTAGA-----------QQALRRTMEL---YS---------------------NSTRFAFACNQSNKIIEPLQS--QCA- 153 (224)
T ss_dssp GSCHHH-----------HHTTHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred ccchhH-----------HHHHhhhccc---cc---------------------cceeeeeccCchhhhhhHHHH--HHH-
Confidence 885432 3344444433 11 567789999999999999999 995
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
.|.|++|+.++...++...+.+.++. ++..+..++..+.| +.+..-+.++.+. .+...++.+++.+.++
T Consensus 154 ~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G-d~R~ai~~Lq~~~-----~~~~~i~~~~i~~~~d 223 (224)
T d1sxjb2 154 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV-----AGHGLVNADNVFKIVD 223 (224)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH-----HHHSSBCHHHHHHHHT
T ss_pred HhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH-----HcCCCcCHHHHHHHhC
Confidence 79999999999999999887654433 22346778887665 4555545555332 2345789888876653
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=6.6e-15 Score=130.52 Aligned_cols=190 Identities=25% Similarity=0.299 Sum_probs=132.0
Q ss_pred hHHHhhhcCCCchh---hhhhc----------CCceEEEEechhhhh--hhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQ----------TSATFLRVVGSELIQ--KYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~----------~~~~~~~v~~s~l~~--~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..++.|+||+|||+ .+|+. .+..++.++.+.++. +|.|+.+..++.+++.+.+....|+||||++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih 120 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIH 120 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTT
T ss_pred CcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhccCCceEEecchH
Confidence 35789999999998 55543 367899999999986 7899999999999999988888999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-----CCCCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-----IETLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-----~~~Ld~al~rp 221 (317)
.++..-++ ++++..+... +..+-.+ +.+.+|++|+. ...-|++|.|
T Consensus 121 ~l~~~g~~--~g~~~d~a~~-------Lkp~L~r-------------------g~i~vIgatT~eey~~~~e~d~al~r- 171 (268)
T d1r6bx2 121 TIIGAGAA--SGGQVDAANL-------IKPLLSS-------------------GKIRVIGSTTYQEFSNIFEKDRALAR- 171 (268)
T ss_dssp TTTTSCCS--SSCHHHHHHH-------HSSCSSS-------------------CCCEEEEEECHHHHHCCCCCTTSSGG-
T ss_pred HHhcCCCC--CCccccHHHH-------hhHHHhC-------------------CCCeEEEeCCHHHHHHHHhhcHHHHh-
Confidence 99865422 2222222232 3333333 88999999864 3456899999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcC------CCCCcCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHh----
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSR------MTLAEDVNLQELIMA-----KDDLSGADIKAICTEAGLMALRE---- 286 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~------~~~~~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~~---- 286 (317)
||. +|.+..|+.++-.+|++..... ..+.+ ..+..++.. .+.+-|.-.-.++.+|+..+...
T Consensus 172 -rF~-~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~-~al~~~v~ls~ryi~~~~~PdKAIdllDea~a~~~~~~~~~ 248 (268)
T d1r6bx2 172 -RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTA-KAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK 248 (268)
T ss_dssp -GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCC
T ss_pred -hhc-ccccCCCCHHHHHHHHHHhhHHHhccCCEEeCh-HHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhhcccc
Confidence 996 8999999999999999765432 22222 223333332 33444555555888887666432
Q ss_pred cCCCcCHHHHHHHHHHH
Q psy7780 287 RRMKVTNEDFKKSKESV 303 (317)
Q Consensus 287 ~~~~it~~d~~~al~~v 303 (317)
.+..+..+|++..+.++
T Consensus 249 ~~~~i~~~di~~~i~~~ 265 (268)
T d1r6bx2 249 RKKTVNVADIESVVARI 265 (268)
T ss_dssp CCCSCCHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHH
Confidence 34569999998887765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.53 E-value=1.1e-14 Score=127.45 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=124.9
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhh----------------hhcCCchH-HHHHHHHHHHh-h
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQ----------------KYLGDGPK-LVRELFRVAEE-H 135 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~----------------~~~g~~~~-~l~~~f~~a~~-~ 135 (317)
++.+|+||||||||+ ++|+++ +..++.+++..... .+.+.... ....+.+.... .
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 123 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcc
Confidence 367899999999999 777664 57788887754221 11222222 23333443333 3
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---C
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---E 212 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---~ 212 (317)
.+.++++|++|.+.... ...+..++..+..... ..+.+|+++|.. +
T Consensus 124 ~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~ 172 (276)
T d1fnna2 124 LYMFLVLDDAFNLAPDI-----------LSTFIRLGQEADKLGA--------------------FRIALVIVGHNDAVLN 172 (276)
T ss_dssp CCEEEEEETGGGSCHHH-----------HHHHHHHTTCHHHHSS--------------------CCEEEEEEESSTHHHH
T ss_pred cccccchhHHHHhhhhh-----------hhhHHHHHhccccccc--------------------cceEEeecCCchhhhh
Confidence 45678889998775332 1222222222111111 567788888874 4
Q ss_pred CCCccccCCCcc-eeEEEeCCCCHHHHHHHHHHHhcCCCCC---cCCCHHHHHHhCC--------CCCHHHHHHHHHHHH
Q psy7780 213 TLDPALIRPGRI-DRKIEFPLPDEKTKRRIFNIHTSRMTLA---EDVNLQELIMAKD--------DLSGADIKAICTEAG 280 (317)
Q Consensus 213 ~Ld~al~rpgRf-~~~I~~~~P~~~~r~~Il~~~l~~~~~~---~~~~~~~ia~~t~--------g~s~~dl~~l~~~A~ 280 (317)
.+++.+.+ |+ ...|.|++|+.+++.+|++.++...... .+..++.+++.+. +=+++.+.++|+.|.
T Consensus 173 ~~~~~~~~--r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~ 250 (276)
T d1fnna2 173 NLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 250 (276)
T ss_dssp TSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hcchhhhh--hhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHH
Confidence 67888887 65 3568999999999999998876532211 2223455555431 125788889999999
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 281 LMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 281 ~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
..|..+++..|+.+|+++|+++++
T Consensus 251 ~~A~~~~~~~I~~edv~~A~~~~~ 274 (276)
T d1fnna2 251 YAAQQNGRKHIAPEDVRKSSKEVL 274 (276)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh
Confidence 999999999999999999999885
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1.3e-14 Score=126.63 Aligned_cols=98 Identities=13% Similarity=0.261 Sum_probs=70.8
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
..+++|||+|.+... .+..+..++++ .. .++.+|++||+++.+++
T Consensus 132 ~~iiiide~d~l~~~-----------~~~~l~~~~e~---~~---------------------~~~~~Il~tn~~~~i~~ 176 (252)
T d1sxje2 132 YKCVIINEANSLTKD-----------AQAALRRTMEK---YS---------------------KNIRLIMVCDSMSPIIA 176 (252)
T ss_dssp CEEEEEECTTSSCHH-----------HHHHHHHHHHH---ST---------------------TTEEEEEEESCSCSSCH
T ss_pred ceEEEeccccccccc-----------cchhhhccccc---cc---------------------ccccceeeeccccchhh
Confidence 348999999987432 23444445443 11 56889999999999999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC--CCCcCCCHHHHHHhCCCCCHHHHHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--TLAEDVNLQELIMAKDDLSGADIKAIC 276 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~--~~~~~~~~~~ia~~t~g~s~~dl~~l~ 276 (317)
++++ ||. .|+|++|+.++..++++..+.+. .+..+..++.++..+.| |++.++
T Consensus 177 ~l~s--R~~-~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~G----d~R~ai 231 (252)
T d1sxje2 177 PIKS--QCL-LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG----NLRVSL 231 (252)
T ss_dssp HHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT----CHHHHH
T ss_pred hhhc--chh-eeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC----cHHHHH
Confidence 9999 994 89999999999999998877653 33334445778877666 555443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.8e-14 Score=120.19 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=96.9
Q ss_pred HHHhhhcCCCchh---hhhh----------cCCceEEEEechhhhh--hhcCCchHHHHHHHHHHHhhC-CceEeecccc
Q psy7780 83 ELIQKYLGDGPKL---AVAN----------QTSATFLRVVGSELIQ--KYLGDGPKLVRELFRVAEEHA-PSIVFIDEID 146 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~----------~~~~~~~~v~~s~l~~--~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD 146 (317)
.+|.|+||+|||+ .+|+ -.+.+++.++.+.++. +|.|+.+..++.+++.+.++. +.|+||||++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih 125 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELH 125 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGG
T ss_pred eEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHH
Confidence 4789999999999 4444 2368999999999985 567888999999999886655 5789999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-----CCCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-----ETLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-----~~Ld~al~rp 221 (317)
.+...-... +...+...|.-.|.. +.+.+|++|... -.-|++|.|
T Consensus 126 ~l~~~g~~~---g~~d~~~~Lkp~L~r--------------------------g~l~~IgatT~eey~~~~e~d~aL~r- 175 (195)
T d1jbka_ 126 TMVGAGKAD---GAMDAGNMLKPALAR--------------------------GELHCVGATTLDEYRQYIEKDAALER- 175 (195)
T ss_dssp GGTT---------CCCCHHHHHHHHHT--------------------------TSCCEEEEECHHHHHHHTTTCHHHHT-
T ss_pred HHhcCCCCC---CcccHHHHHHHHHhC--------------------------CCceEEecCCHHHHHHHHHcCHHHHh-
Confidence 998654221 122345666666664 778899988643 245999999
Q ss_pred CcceeEEEeCCCCHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIF 242 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il 242 (317)
||. +|.+..|+.++-..|+
T Consensus 176 -rF~-~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 176 -RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TEE-EEECCCCCHHHHHTTC
T ss_pred -cCC-EeecCCCCHHHHHHHh
Confidence 996 8999999999887765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.39 E-value=6.5e-13 Score=121.13 Aligned_cols=148 Identities=17% Similarity=0.200 Sum_probs=99.3
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-CCCCc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-ETLDP 216 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-~~Ld~ 216 (317)
.|+||||++.+-+ +++..|.+.|++ -.-. ......+..+|.++++|+|+|.. ..+++
T Consensus 129 gvl~iDEi~~~~~-----------~~~~aLl~~me~---~~v~--------i~r~g~~~~~p~~f~liaa~Np~~~~l~~ 186 (333)
T d1g8pa_ 129 GYLYIDECNLLED-----------HIVDLLLDVAQS---GENV--------VERDGLSIRHPARFVLVGSGNPEEGDLRP 186 (333)
T ss_dssp EEEEETTGGGSCH-----------HHHHHHHHHHHH---SEEE--------ECCTTCCEEEECCEEEEEEECSCSCCCCH
T ss_pred cEeecccHHHHHH-----------HHHHHHhhhhcC---CeEE--------ecccCceecCCCCEEEEEecCcccccccc
Confidence 5999999998742 234444444443 1100 11223345566789999999984 45999
Q ss_pred cccCCCcceeEEEeCCC-CHHHHHHHHHHHhc-------------------------------CCCCCcC--CCHHHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTS-------------------------------RMTLAED--VNLQELIM 262 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~-------------------------------~~~~~~~--~~~~~ia~ 262 (317)
++++ ||+..+.++.| +.+.+.++...... +.....+ ........
T Consensus 187 ~llD--Rf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~ 264 (333)
T d1g8pa_ 187 QLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCI 264 (333)
T ss_dssp HHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHH
T ss_pred chhh--hhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHH
Confidence 9999 99999999987 55666555533211 1111100 01122223
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 263 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 263 ~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
.....|.+-...+++-|...|.-+++..|+.+|+.+|+.-++.++-.
T Consensus 265 ~~~~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~~lvL~hR~~ 311 (333)
T d1g8pa_ 265 ALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 311 (333)
T ss_dssp HSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HcCCCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhcc
Confidence 34556899999999999999999999999999999999999887644
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=3.7e-12 Score=118.38 Aligned_cols=169 Identities=19% Similarity=0.239 Sum_probs=105.4
Q ss_pred HHHhhhcCCCchh---hhhhc----------CCceEEEEechhhhh--hhcCCchHHHHHHHHHHHhhC-CceEeecccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ----------TSATFLRVVGSELIQ--KYLGDGPKLVRELFRVAEEHA-PSIVFIDEID 146 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~----------~~~~~~~v~~s~l~~--~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD 146 (317)
.++.|+||+|||. .+|+. .+..++.++.+.|+. +|.|+.+..+..++..+.... +.||||||++
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h 125 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELH 125 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHH
Confidence 4677999999999 44542 257899999999986 678999999999999988775 6789999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-----CCCCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-----IETLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-----~~~Ld~al~rp 221 (317)
.+.+.-+ ++++.....+|.-.|.. +.+-+|++|.. .+ =|+||.|
T Consensus 126 ~l~~~g~---~~g~~d~a~~Lkp~L~r--------------------------g~~~~I~~tT~~ey~~~e-~d~al~r- 174 (387)
T d1qvra2 126 TVVGAGK---AEGAVDAGNMLKPALAR--------------------------GELRLIGATTLDEYREIE-KDPALER- 174 (387)
T ss_dssp ---------------------HHHHHT--------------------------TCCCEEEEECHHHHHHHT-TCTTTCS-
T ss_pred HHhcCCC---CCCcccHHHHHHHHHhC--------------------------CCcceeeecCHHHHHHhc-ccHHHHH-
Confidence 9986542 12233455667777765 77889999854 33 4899999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCC----CCC-cCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLA-EDVNLQELIMA-----KDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~ 284 (317)
||. .|.++.|+.++-..|++.....+ .+. .+..+...+.. ++.+-|.-.-.++.+|+....
T Consensus 175 -rF~-~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a~~~ 245 (387)
T d1qvra2 175 -RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLR 245 (387)
T ss_dssp -CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred -hcc-cccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHHHHHHH
Confidence 996 89999999999999998765432 121 12223333332 456677777788888776553
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=3.1e-12 Score=109.62 Aligned_cols=159 Identities=14% Similarity=0.223 Sum_probs=103.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
|..+|||||||||. |+|+++ +..++++++.++........ .....++++..+. -.+|+|||+|.+..+.
T Consensus 38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dll~iDDi~~i~~~~-- 113 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS--VDLLLLDDVQFLSGKE-- 113 (213)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHT--CSEEEEECGGGGTTCH--
T ss_pred cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhh--ccchhhhhhhhhcCch--
Confidence 45799999999999 888776 46788888888766433211 1123333333332 3799999999997543
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC---CccccCCCcce--eEEE
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL---DPALIRPGRID--RKIE 229 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L---d~al~rpgRf~--~~I~ 229 (317)
..+..+..+++.+-.. +..++|++...|..+ .+.|.+ ||. ..+.
T Consensus 114 -------~~~~~lf~lin~~~~~----------------------~~~iiits~~~p~~l~~~~~dL~S--RL~~g~~~~ 162 (213)
T d1l8qa2 114 -------RTQIEFFHIFNTLYLL----------------------EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVE 162 (213)
T ss_dssp -------HHHHHHHHHHHHHHHT----------------------TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEE
T ss_pred -------HHHHHHHHHHHHHhhc----------------------cceEEEecCCcchhccccchHHHH--HhhCceEEE
Confidence 2233344444433211 555666666667655 477888 874 5666
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
++ |+.++|.++++.+....++. ++..++-+++++. +.++|..+++.
T Consensus 163 i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~ 209 (213)
T d1l8qa2 163 IE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKL 209 (213)
T ss_dssp CC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHH
T ss_pred EC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 76 66789999999987665554 3334666777763 58888887765
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2.6e-11 Score=103.14 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=95.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------------------------ceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------------------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------------------------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
+.||+||||+|||+ ++|+++- -.++.+....- ...-.-..+|++.+.+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~i~~~~ir~l~~~~~~ 102 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTEKLNE 102 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhc---ccccccchhhHHhhhhhh
Confidence 47899999999999 6666542 12222221110 001123456666665542
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
...-|++|||+|.+... .+..|..++ +... .++.+|++||+
T Consensus 103 ~~~~~~~kviIide~d~l~~~-----------a~n~Llk~l---Eep~---------------------~~~~fIl~t~~ 147 (207)
T d1a5ta2 103 HARLGGAKVVWVTDAALLTDA-----------AANALLKTL---EEPP---------------------AETWFFLATRE 147 (207)
T ss_dssp CCTTSSCEEEEESCGGGBCHH-----------HHHHHHHHH---TSCC---------------------TTEEEEEEESC
T ss_pred ccccCccceEEechhhhhhhh-----------hhHHHHHHH---Hhhc---------------------ccceeeeeecC
Confidence 23459999999998532 234444444 4332 67889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 274 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~ 274 (317)
++.|.|++++ |+ ..+.|++|+.++...+++... .++ +..+..+++.+.| ++++.-+
T Consensus 148 ~~~ll~tI~S--Rc-~~i~~~~~~~~~~~~~L~~~~---~~~-~~~~~~i~~~s~G-s~r~al~ 203 (207)
T d1a5ta2 148 PERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALA 203 (207)
T ss_dssp GGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHH
T ss_pred hhhhhhhhcc--ee-EEEecCCCCHHHHHHHHHHcC---CCC-HHHHHHHHHHcCC-CHHHHHH
Confidence 9999999999 99 699999999999888887543 222 2335667777665 4554433
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=4.7e-11 Score=108.02 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=111.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh-----hcCCchHHH-----HHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK-----YLGDGPKLV-----RELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~-----~~g~~~~~l-----~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
..||.||||||||. ++|..++.+|++++++++.+. ..|.....+ ..+....+++..+|++|||+|..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa 133 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 133 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred EEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhcccccc
Confidence 35899999999999 999999999999999987542 233322111 11334445566699999999986
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC----------------
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---------------- 212 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---------------- 212 (317)
. +.+...+.++++. |.-....+... .-.+.++|+|||--.
T Consensus 134 ~-----------~~V~~~lLqild~--G~ltd~~Gr~v-----------df~n~iiI~Tsnig~~~i~~~~~~~~~~~~~ 189 (315)
T d1r6bx3 134 H-----------PDVFNILLQVMDN--GTLTDNNGRKA-----------DFRNVVLVMTTNAGVRETERKSIGLIHQDNS 189 (315)
T ss_dssp C-----------HHHHHHHHHHHHH--SEEEETTTEEE-----------ECTTEEEEEEECSSCC---------------
T ss_pred c-----------chHhhhhHHhhcc--ceecCCCCCcc-----------CccceEEEeccchhhHHHHhhhccchhhhhh
Confidence 4 3456666666653 11111011000 116788999999421
Q ss_pred ---------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHh--CCCCCHHH
Q psy7780 213 ---------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMA--KDDLSGAD 271 (317)
Q Consensus 213 ---------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~--t~g~s~~d 271 (317)
.+.|.++. |||..+.|.+.+.++..+|+...+... ... .+...+.++.. ...+-.+.
T Consensus 190 ~~~~~~l~~~f~pEfln--Rid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~~~~~a~~~l~~~~yd~~~GaR~ 267 (315)
T d1r6bx3 190 TDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARP 267 (315)
T ss_dssp --CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTT
T ss_pred HhHHHHHHHhcCHHHHh--hhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHhCCCCCCChhh
Confidence 26788888 999999999999999999887765432 111 12223445443 34455567
Q ss_pred HHHHHHHH
Q psy7780 272 IKAICTEA 279 (317)
Q Consensus 272 l~~l~~~A 279 (317)
|++++++-
T Consensus 268 L~r~Ie~~ 275 (315)
T d1r6bx3 268 MARVIQDN 275 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776643
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.10 E-value=2.9e-11 Score=109.42 Aligned_cols=171 Identities=16% Similarity=0.261 Sum_probs=108.3
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhh------------hhcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQ------------KYLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~------------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.||.||+|+|||. ++|+.+ +.+|++++++++.. .|+|..+. ..+.+..+++.-|||+|||
T Consensus 56 ~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~--~~l~~~~~~~p~~Vvl~DE 133 (315)
T d1qvra3 56 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDE 133 (315)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESS
T ss_pred EEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcCcccC--ChHHHHHHhCCCcEEEEeh
Confidence 5899999999999 888887 77999999887653 24443321 1233344455559999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--------------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-------------- 210 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-------------- 210 (317)
||...+ .++..|.++++. |.-....+. .....+.++|+|||-
T Consensus 134 ieK~~~-----------~v~~~ll~~l~~--g~~~~~~gr-----------~v~~~~~i~i~tsnlG~~~i~~~~~~~~~ 189 (315)
T d1qvra3 134 IEKAHP-----------DVFNILLQILDD--GRLTDSHGR-----------TVDFRNTVIILTSNLGSPLILEGLQKGWP 189 (315)
T ss_dssp GGGSCH-----------HHHHHHHHHHTT--TEECCSSSC-----------CEECTTEEEEEECCTTHHHHHHHHHTTCC
T ss_pred HhhcCH-----------HHHHHHHHHhcc--CceeCCCCc-----------EecCcceEEEEecccChHHHhhhcccccc
Confidence 998642 355666666543 111110000 112278999999995
Q ss_pred ------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHh--CCC
Q psy7780 211 ------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMA--KDD 266 (317)
Q Consensus 211 ------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~--t~g 266 (317)
.+.+.|.++. |||..+.|.+.+.++..+|+...+.++ .+. .+...+.|++. ...
T Consensus 190 ~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~~~~y~~~ 267 (315)
T d1qvra3 190 YERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPV 267 (315)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTT
T ss_pred hhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHhCCCCC
Confidence 3458899999 999999999999999999987654332 111 12224555554 344
Q ss_pred CCHHHHHHHHHHHHH
Q psy7780 267 LSGADIKAICTEAGL 281 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~ 281 (317)
+-++.|++++++...
T Consensus 268 ~GAR~L~r~Ie~~i~ 282 (315)
T d1qvra3 268 FGARPLRRVIQRELE 282 (315)
T ss_dssp TBTSTHHHHHHHHTH
T ss_pred CCcchHHHHHHHHHH
Confidence 555777777765443
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.01 E-value=4.5e-10 Score=103.32 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=87.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH----HhhCCceEeeccccccccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
.||.||+|||||. ++|..++.+|+.++++++.. .|+|.- +..++++...+ +....+|+++||+|...+...
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~ 150 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE 150 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----
T ss_pred eeeeCCCCccHHHHHHHHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccc
Confidence 5889999999999 89999999999999998876 355543 45677776643 445568999999999886542
Q ss_pred CCCC---CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--------------------
Q psy7780 154 DSNS---GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-------------------- 210 (317)
Q Consensus 154 ~~~~---~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-------------------- 210 (317)
.... ..+..+++.|.++++ +-.......... .....+.++|.|+|-
T Consensus 151 ~~~~~~d~a~~~V~~~lLqild---~~~~~~~~~~gr--------~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~ 219 (364)
T d1um8a_ 151 NRSITRDVSGEGVQQALLKIVE---GSLVNIPPKGGR--------KHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTT 219 (364)
T ss_dssp ---------CHHHHHHHHHHHH---CCEEC-----------------------CEECTTCEEEEEECCTTHHHHTTTSCS
T ss_pred cccccccccchHHHHhhhhhhc---CceeccCCCCCC--------cCCcceeEEEeehhhhhhhcccchhhhhhhhhhcc
Confidence 2211 133445665555554 311100000000 000033445555553
Q ss_pred -----------------------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 211 -----------------------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 211 -----------------------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
...+.|.++. ||+.++.|.+.++++-.+|+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~g--Ri~~iv~f~~L~~~~l~~Il~~ 280 (364)
T d1um8a_ 220 QNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 280 (364)
T ss_dssp SCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred cccccccccccchhhhhhhhccccHHHHhhhhhHHHHHH--HhcchhhHhhhhHHHHHHHHHH
Confidence 1225677888 9999999999999999999963
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=98.76 E-value=2.8e-08 Score=93.40 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=36.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh-hcCCc-hHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK-YLGDG-PKLVRELFR 130 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~-~~g~~-~~~l~~~f~ 130 (317)
+|+.||+|||||+ ++|+.+++||+.++|+.+..- |+|+- +..++++.+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DVesii~~L~~ 104 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 104 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecchhHHHHHHHH
Confidence 5899999999999 999999999999999998763 66554 444555543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.73 E-value=1.2e-10 Score=101.61 Aligned_cols=69 Identities=9% Similarity=0.001 Sum_probs=48.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc---CCchHHHHHHHHHHHhhCCceEeecccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL---GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~---g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
.+||+||||||||+ ++|++++.+|+.++++++..... +......+..+..++...+++.+.++.+.+..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ 108 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHHhh
Confidence 37899999999999 99999999999999988875432 22233344456666666555555555444433
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=5.1e-09 Score=88.11 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=78.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC----CceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~Ii~iDEiD~l 148 (317)
..||+|+||+|||+ .+|+... ..|+.+.+.. + .-+-..+|++.+.+...+ .-|++|||+|.+
T Consensus 17 ~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~---~--~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l 91 (198)
T d2gnoa2 17 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM 91 (198)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCc---C--CCCHHHHHHHHHHHhhCcccCCCEEEEEeCcccc
Confidence 46899999999999 5555442 2477776531 0 123567888888775432 349999999998
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEE
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKI 228 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I 228 (317)
... .+..|...|++ .. .+.++|.+||+++.|.|++++ || ..+
T Consensus 92 ~~~-----------aqNaLLK~LEE---Pp---------------------~~t~fiLit~~~~~ll~TI~S--RC-~~i 133 (198)
T d2gnoa2 92 TQQ-----------AANAFLKALEE---PP---------------------EYAVIVLNTRRWHYLLPTIKS--RV-FRV 133 (198)
T ss_dssp CHH-----------HHHHTHHHHHS---CC---------------------TTEEEEEEESCGGGSCHHHHT--TS-EEE
T ss_pred chh-----------hhhHHHHHHhC---CC---------------------CCceeeeccCChhhCHHHHhc--ce-EEE
Confidence 532 34555555554 21 578899999999999999999 99 488
Q ss_pred EeCCCCH
Q psy7780 229 EFPLPDE 235 (317)
Q Consensus 229 ~~~~P~~ 235 (317)
.|+.|..
T Consensus 134 ~~~~p~~ 140 (198)
T d2gnoa2 134 VVNVPKE 140 (198)
T ss_dssp ECCCCHH
T ss_pred eCCCchH
Confidence 9988854
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.54 E-value=6.5e-08 Score=83.92 Aligned_cols=185 Identities=17% Similarity=0.220 Sum_probs=101.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCCc-------hHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGDG-------PKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~~-------~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|++++|+||||||+ ++.+.. ..+++.++|..+... ..|.. ...-..+|+.|. ...||||
T Consensus 25 pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~---gGtL~l~ 101 (247)
T d1ny5a2 25 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLD 101 (247)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEE
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCcccCCcCCcccccCCHHHccC---CCEEEEe
Confidence 78999999999998 454333 458999998764322 11110 001122344442 3589999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~ 216 (317)
|||.+-. ..+..+.++++.-.-.. .... .....++.+|++|+.+- .+++
T Consensus 102 ~i~~L~~-----------~~Q~~L~~~l~~~~~~~-~~~~------------~~~~~~~RlI~~s~~~l~~l~~~~~f~~ 157 (247)
T d1ny5a2 102 EIGELSL-----------EAQAKLLRVIESGKFYR-LGGR------------KEIEVNVRILAATNRNIKELVKEGKFRE 157 (247)
T ss_dssp SGGGCCH-----------HHHHHHHHHHHHSEECC-BTCC------------SBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred ChHhCCH-----------HHHHHHHHHHHhCCEEE-CCCC------------CceecCeEEEEecCCCHHHHHHcCCCcH
Confidence 9999843 23566666665311100 0000 00013577888887631 2444
Q ss_pred cccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCCHHHHHHh-CCCCCH--HHHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVNLQELIMA-KDDLSG--ADIKAICTEAGLMALR 285 (317)
Q Consensus 217 al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~-t~g~s~--~dl~~l~~~A~~~a~~ 285 (317)
.|+. |+. ..|.+|+.. .++...|++.++.+. ... ...+-+.+... ...+.| ++|++++++|...+
T Consensus 158 ~L~~--~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~-- 233 (247)
T d1ny5a2 158 DLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS-- 233 (247)
T ss_dssp HHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC--
T ss_pred HHHh--hcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--
Confidence 4444 432 357777663 456666666665542 111 11222222221 234544 68888888876543
Q ss_pred hcCCCcCHHHHHH
Q psy7780 286 ERRMKVTNEDFKK 298 (317)
Q Consensus 286 ~~~~~it~~d~~~ 298 (317)
....|+.+|+-.
T Consensus 234 -~~~~I~~~dl~~ 245 (247)
T d1ny5a2 234 -EGKFIDRGELSC 245 (247)
T ss_dssp -CSSEECHHHHHH
T ss_pred -CCCeECHHHccc
Confidence 456799999854
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.48 E-value=5.6e-07 Score=77.30 Aligned_cols=162 Identities=10% Similarity=0.068 Sum_probs=96.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc----------------------------------------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL---------------------------------------- 118 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~---------------------------------------- 118 (317)
.++++||+|+|||+ .++++.+..+..+++........
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNE 110 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccc
Confidence 56799999999999 78888888888887644322100
Q ss_pred ------CCchHHHHHHHHHHHh--hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhh
Q psy7780 119 ------GDGPKLVRELFRVAEE--HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVY 190 (317)
Q Consensus 119 ------g~~~~~l~~~f~~a~~--~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~ 190 (317)
......+..+++.... ..+.++++||++.+..... .++...+..+... .
T Consensus 111 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~-------~~~~~~l~~~~~~---~------------- 167 (283)
T d2fnaa2 111 IKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG-------VNLLPALAYAYDN---L------------- 167 (283)
T ss_dssp EEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT-------CCCHHHHHHHHHH---C-------------
T ss_pred cccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccch-------HHHHHHHHHHHHh---h-------------
Confidence 0011223344444332 3467899999998865331 1122222222221 1
Q ss_pred cccccccCCCCeEEEEEcCCCCC---------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHH
Q psy7780 191 SSLTLIYLPGDVKVIMATNRIET---------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELI 261 (317)
Q Consensus 191 ~~~~~~~~~~~v~vI~tTN~~~~---------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia 261 (317)
..+..+.+...... ....+ .||+...+++++.+.++..++++..+....+.. .+++.+.
T Consensus 168 ---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~-~~~~~i~ 235 (283)
T d2fnaa2 168 ---------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KDYEVVY 235 (283)
T ss_dssp ---------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CCHHHHH
T ss_pred ---------hhhhhhhccccchHHHHHHHhhhhcchh--cccceeEEeeCCCCHHHHHHHHHhhhhhcCCCH-HHHHHHH
Confidence 33444444433211 11112 236667899999999999999988876655443 3477888
Q ss_pred HhCCCCCHHHHHHHHHHH
Q psy7780 262 MAKDDLSGADIKAICTEA 279 (317)
Q Consensus 262 ~~t~g~s~~dl~~l~~~A 279 (317)
+.+.|. |..|..++..+
T Consensus 236 ~~~~G~-P~~L~~~~~~~ 252 (283)
T d2fnaa2 236 EKIGGI-PGWLTYFGFIY 252 (283)
T ss_dssp HHHCSC-HHHHHHHHHHH
T ss_pred HHhCCC-HHHHHHHHHHH
Confidence 888885 77777666533
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.76 E-value=1.9e-05 Score=63.30 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCCceEeecccccc
Q psy7780 124 LVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 124 ~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
..+..+..+....|+++++||+...
T Consensus 87 ~~~~~l~~~~~~~~~vlllDE~~~~ 111 (178)
T d1ye8a1 87 ILERAYREAKKDRRKVIIIDEIGKM 111 (178)
T ss_dssp HHHHHHHHHHHCTTCEEEECCCSTT
T ss_pred hHHHHHHHHHhcCCCceeecCCCcc
Confidence 3455666777888999999997543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=8.1e-05 Score=57.90 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCch
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGP 122 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~ 122 (317)
+.|.||||||||| .+|.+++++|+. ...+.....|...
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~~~~id--~~~~~~~~~~~~~ 45 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLNMEFYD--SDQEIEKRTGADV 45 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTTCEEEE--HHHHHHHHHTSCH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEe--echhHHhhhcccc
Confidence 4578999999999 999999999874 4444444444443
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.13 E-value=4.6e-05 Score=60.53 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
.++|.||||||||| ++|++++.+++.++...+.
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~ 41 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 41 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHH
Confidence 46789999999999 9999999999999875543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=7.3e-05 Score=59.48 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=29.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++|.|+||||||| ++|+.++.+++......+...
T Consensus 10 I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~~~ 46 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFE 46 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHhhh
Confidence 5789999999999 999999999998877666554
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.79 E-value=0.00085 Score=57.98 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc--CCCHHHHHHhCCCCCHHHHH
Q psy7780 203 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE--DVNLQELIMAKDDLSGADIK 273 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~--~~~~~~ia~~t~g~s~~dl~ 273 (317)
.+|.||...+... .+.. +. ..+.+...+.++-.++|..+....+... .....++++.|.|. |--|.
T Consensus 159 rilvTTR~~~v~~-~~~~--~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~Gl-PLAl~ 226 (277)
T d2a5yb3 159 RCLVTTRDVEISN-AASQ--TC-EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PATLM 226 (277)
T ss_dssp EEEEEESBGGGGG-GCCS--CE-EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHHHH
T ss_pred eEEEEeehHHHHH-hcCC--CC-ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCC-HHHHH
Confidence 3777776543332 2222 22 3678899999999999987643332221 11135667777775 54443
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00078 Score=57.97 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=42.5
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEechhhh-----hh-----------hcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGSELI-----QK-----------YLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~-----~~-----------~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
-.+|+|+||+|||+ +-|+..+...++++...-+ .. .....+..+..+-...+...+++
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~~~~~l 135 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 135 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 46799999999998 3344456667777653211 11 01112333333333345577899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|++|=+.++.++
T Consensus 136 iViDSi~al~~~ 147 (263)
T d1u94a1 136 IVVDSVAALTPK 147 (263)
T ss_dssp EEEECGGGCCCH
T ss_pred EEEECccccccc
Confidence 999999888753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.63 E-value=0.0013 Score=56.73 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=53.6
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEechh-----hhhhh-----------cCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGSE-----LIQKY-----------LGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~-----l~~~~-----------~g~~~~~l~~~f~~a~~~~P~I 139 (317)
-..++|+||||||+ +-|+..|...++++... ....+ ....+..+.-+-...+...+.+
T Consensus 59 itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~~~~~l 138 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 138 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhcCCCcE
Confidence 35689999999998 44555677778886532 11111 1112333332222334456889
Q ss_pred EeecccccccccccCCCCCc---hhHHHHHHHHHHHHhcCCC
Q psy7780 140 VFIDEIDAVGTKRYDSNSGG---EREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~~~---~~~~~~~l~~ll~~ld~~~ 178 (317)
|++|=+.++.++..-.+... .....+.+..++..+-.+-
T Consensus 139 iIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~ 180 (268)
T d1xp8a1 139 VVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAIL 180 (268)
T ss_dssp EEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999999886543221111 1234555666666555443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.63 E-value=0.00015 Score=57.10 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.||||||||| .+|+.++.+++.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~~~~i~~ 35 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence 3578999999999 9999999998753
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.55 E-value=0.00038 Score=55.41 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+|+.+|++|+..
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~ 33 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALGYEFVDT 33 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 4577999999999 9999999998864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.49 E-value=0.00037 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.0
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
.|.|+||+|||| .+|+.+|++|+.++
T Consensus 4 ~liG~~GsGKsTi~k~La~~l~~~~~d~d 32 (161)
T d1viaa_ 4 VFIGFMGSGKSTLARALAKDLDLVFLDSD 32 (161)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence 466999999999 99999999999753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.48 E-value=0.00038 Score=55.15 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.5
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
.|.|+||||||| .+|+.++++|+..+
T Consensus 5 vliG~~G~GKSTig~~La~~l~~~fiD~D 33 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAKALGVGLLDTD 33 (165)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence 356999999999 99999999998643
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.21 E-value=0.0005 Score=54.06 Aligned_cols=30 Identities=7% Similarity=0.004 Sum_probs=26.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
++|.|+||+|||| ++|++++.+++.++...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~ 38 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEeecch
Confidence 5688999999999 99999999998887543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=96.17 E-value=0.0068 Score=45.78 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=20.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
.++.+|.|+|||+ .++.+.+..++.+....
T Consensus 11 ~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~~ 43 (136)
T d1a1va1 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSV 43 (136)
T ss_dssp EEEECCTTSCTTTHHHHHHHTTTCCEEEEESCH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcEEEEcChH
Confidence 3688999999999 34455666666665543
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.16 E-value=0.0015 Score=56.30 Aligned_cols=96 Identities=20% Similarity=0.151 Sum_probs=54.0
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEechhhh-----hhhcCCc--------hHHHHHHHHHH----HhhCCc
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGSELI-----QKYLGDG--------PKLVRELFRVA----EEHAPS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~-----~~~~g~~--------~~~l~~~f~~a----~~~~P~ 138 (317)
-..|+|+||+|||+ +-|+..+...++++...-+ .. .|.- +....++++.+ +...++
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~-~GvD~d~il~~~~~~~E~~~~~~~~l~~~~~~~ 140 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKK-LGVDTDSLLVSQPDTGEQALEIADMLIRSGALD 140 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHH-HTCCGGGCEEECCSSHHHHHHHHHHHHHTTCEE
T ss_pred eEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHH-hCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 45689999999998 4556667788888764311 11 0110 11233344433 356688
Q ss_pred eEeecccccccccccCCC---CCchhHHHHHHHHHHHHhcCCC
Q psy7780 139 IVFIDEIDAVGTKRYDSN---SGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 139 Ii~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
+|++|=+.++.++..-.. ........+.+..++..+....
T Consensus 141 liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~ 183 (269)
T d1mo6a1 141 IVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 (269)
T ss_dssp EEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999986432111 1111223456666666655443
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.09 E-value=0.0079 Score=49.77 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 124 LVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 124 ~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
.+..+........|.++++|.++.+...
T Consensus 104 ~~~~i~~~i~~~~~~~vviDs~~~~~~~ 131 (242)
T d1tf7a2 104 HLQIIKSEINDFKPARIAIDSLSALARG 131 (242)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred HHHHHHHHHHhcCCceeeeecchhhhcC
Confidence 3555566667788999999999988643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.99 E-value=0.00056 Score=55.26 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=25.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
++|.||||||||| .+|+.+|.++ ++.++++...
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~~~~--is~~~~~~~~ 41 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQLAH--ISAGDLLRAE 41 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCcE--EehhHHHHHh
Confidence 4578999999999 8999988775 4566665543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.00055 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.||||||||| ++|+.++++++..+
T Consensus 9 ivl~G~~GsGKsT~a~~La~~l~~~~~~~d 38 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGD 38 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence 4578999999999 99999998886643
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.91 E-value=0.00075 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=20.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
+++.||||+|||| .+|.+++..++
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4688999999999 89999887654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.63 E-value=0.0015 Score=52.88 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++|.||||+|||| .+|+.+|.++ ++.++++..
T Consensus 11 I~l~G~pGSGKsT~a~~La~~~g~~~--is~g~llr~ 45 (194)
T d3adka_ 11 IFVVGGPGSGKGTQCEKIVQKYGYTH--LSTGDLLRA 45 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTCCEE--EEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCee--EeccHHHHH
Confidence 4578999999999 8999887655 566776654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.58 E-value=0.0029 Score=52.26 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.++|.||+|+||||
T Consensus 8 vi~lvGptGvGKTT 21 (207)
T d1okkd2 8 VVLVVGVNGVGKTT 21 (207)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35789999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.55 E-value=0.0084 Score=48.88 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhCCceEeeccccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+..+-..+.++.|.++++|.+..+...
T Consensus 114 ~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 114 IERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp HHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred HHHHHHHHHhhccchhhhhHHHHHHHh
Confidence 455555667888999999999988754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.52 E-value=0.001 Score=52.99 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=24.2
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++.||||+|||| .+|+++|..++ +..+++..
T Consensus 4 ~i~G~pGSGKsT~a~~La~~~~~~~i--~~~~ll~~ 37 (182)
T d1zina1 4 VLMGLPGAGKGTQAEKIVAAYGIPHI--STGDMFRA 37 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCCEE--EHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCcee--chhHHHHH
Confidence 578999999999 89999887655 45666553
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.0012 Score=54.04 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+.+.||||+||+| .+|+++|+++ ++.++|+-
T Consensus 6 I~I~GppGSGKgT~ak~La~~~gl~~--iStGdLlR 39 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIYR 39 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--ECHHHHHH
Confidence 3467999999999 9999998766 56666653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0029 Score=52.39 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=34.6
Q ss_pred HHHhhhcCCCchh---hhh---hcCCceEEEEechhh-------hhh---------hc----CCchHHHHHHHHHHHhhC
Q psy7780 83 ELIQKYLGDGPKL---AVA---NQTSATFLRVVGSEL-------IQK---------YL----GDGPKLVRELFRVAEEHA 136 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA---~~~~~~~~~v~~s~l-------~~~---------~~----g~~~~~l~~~f~~a~~~~ 136 (317)
++|.||+|+|||| -+| ..-|..+.-+.+-.. +.. +. .+....+++..+.|+...
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~~ 91 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARN 91 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 5689999999999 222 233445444433211 000 11 122344555556666555
Q ss_pred CceEeecccc
Q psy7780 137 PSIVFIDEID 146 (317)
Q Consensus 137 P~Ii~iDEiD 146 (317)
-.+||||=..
T Consensus 92 ~d~ilIDTaG 101 (211)
T d2qy9a2 92 IDVLIADTAG 101 (211)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEeccCC
Confidence 5788888543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.39 E-value=0.0047 Score=49.17 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=20.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+++.|+||||||| .++...++. .++.-++
T Consensus 17 iil~G~pGsGKST~a~~l~~~~~~~--~i~~D~~ 48 (172)
T d1yj5a2 17 VVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL 48 (172)
T ss_dssp EEEECCTTSSHHHHHHHHTGGGTCE--EEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCE--EEchHHH
Confidence 5789999999999 666666654 4444443
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.35 E-value=0.0013 Score=52.88 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+|.||||+|||| .+|+++|+.+ ++.++++.
T Consensus 7 il~G~pGSGKsT~a~~La~~~g~~~--i~~gdllr 39 (190)
T d1ak2a1 7 VLLGPPGAGKGTQAPKLAKNFCVCH--LATGDMLR 39 (190)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHHH
Confidence 467999999999 8999988665 55566654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.34 E-value=0.0016 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=18.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCce
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSAT 104 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~ 104 (317)
+++.||||+|||| .+|++++..
T Consensus 8 I~i~G~~GsGKTT~~~~La~~l~~~ 32 (174)
T d1y63a_ 8 ILITGTPGTGKTSMAEMIAAELDGF 32 (174)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 5688999999999 999998753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.29 E-value=0.0015 Score=52.33 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++|.||||+|||| .+|+++|.. .++..+++..
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~g~~--~i~~~d~~~~ 39 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERFHAA--HLATGDMLRS 39 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCE--EEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eEecccccee
Confidence 3567999999999 999998766 5555666554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.25 E-value=0.0014 Score=52.40 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+|.||||+|||| .+|+.+|+.++ +.++++..
T Consensus 4 ~i~G~pGsGKsT~a~~La~~~g~~~i--~~~~l~~~ 37 (181)
T d2cdna1 4 LLLGPPGAGKGTQAVKLAEKLGIPQI--STGELFRR 37 (181)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCCEE--EHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCceE--chHHHHHH
Confidence 567999999999 89999987655 45565544
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.23 E-value=0.0018 Score=52.46 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=24.3
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++.||||+|||| .+|+++|+.+ ++..+++..
T Consensus 10 iliG~PGSGKtT~a~~La~~~g~~~--is~gdllr~ 43 (189)
T d2ak3a1 10 AIMGAPGSGKGTVSSRITKHFELKH--LSSGDLLRD 43 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHHH
Confidence 466999999999 8999988665 566676643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.21 E-value=0.0016 Score=52.56 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.||||+|||| .+|+++|.. +++..+++.
T Consensus 9 I~i~G~pGSGKsT~a~~La~~~g~~--~i~~g~~~r 42 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCANIVRDFGWV--HLSAGDLLR 42 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCE--EEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCc--eEchhhHHH
Confidence 4688999999999 899998865 455556553
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.002 Score=52.02 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.||||+|||| .+|+.+|+.+ ++..+++.
T Consensus 11 I~i~GppGSGKsT~a~~La~~~g~~~--is~gdl~R 44 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKDYSFVH--LSAGDLLR 44 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE--EehhHHHH
Confidence 4577999999999 9999998765 45556553
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.14 E-value=0.0016 Score=52.13 Aligned_cols=31 Identities=6% Similarity=0.223 Sum_probs=23.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
++|.||||+|||| .+|+++|+.++ +..+++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g~~~i--s~gdllr 36 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYGTPHI--STGDMFR 36 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCcee--eHHHHHH
Confidence 3577999999999 89999887655 4555553
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.0015 Score=51.99 Aligned_cols=29 Identities=3% Similarity=0.066 Sum_probs=22.7
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+|.||||+|||| .+|+++++.++ +.++++
T Consensus 4 ~i~G~pGSGKsT~~~~La~~~~~~~i--~~~~ll 35 (179)
T d1e4va1 4 ILLGAPVAGKGTQAQFIMEKYGIPQI--STGDML 35 (179)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCCEE--EHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcee--chhhHh
Confidence 567999999999 99999886655 455554
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.09 E-value=0.031 Score=47.12 Aligned_cols=29 Identities=7% Similarity=-0.079 Sum_probs=20.7
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~ 110 (317)
-.++.|+||+|||+ .+|...|.++..++.
T Consensus 37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 36789999999998 234455777766653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.08 E-value=0.0029 Score=51.92 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=22.3
Q ss_pred HhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 85 IQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+.||||+|||| .+|.++|++++ +.++++
T Consensus 8 IdGp~GsGKgT~ak~La~~lg~~~i--stGdl~ 38 (223)
T d1q3ta_ 8 IDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 38 (223)
T ss_dssp EECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEE--CHHHHH
Confidence 56999999999 99999987754 555554
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0015 Score=51.36 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=15.2
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+++.||||||||+ ++++++
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999999 555554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.74 E-value=0.00074 Score=53.09 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
++|.|+||+|||| ++|+.++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 5689999999999 88888753
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.0027 Score=51.03 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=23.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.||||+|||| .+|+++|... ++.++++.
T Consensus 4 I~i~GppGSGKsT~a~~La~~~g~~~--i~~g~llR 37 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELLR 37 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--EcHHHHHH
Confidence 3578999999999 8999887644 56666654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.63 E-value=0.0044 Score=47.42 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||| .++.+.. .+..++..++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~~~ 39 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQ 39 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHHST-TEEEECHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-CCEEechHHHHH
Confidence 4578999999999 4544332 355566555543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.31 E-value=0.0063 Score=50.30 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.8
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
++|.||+|+||||
T Consensus 15 i~lvGptGvGKTT 27 (211)
T d1j8yf2 15 IMLVGVQGTGKAT 27 (211)
T ss_dssp EEEECSCCC----
T ss_pred EEEECCCCCCHHH
Confidence 5688999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.19 E-value=0.0061 Score=50.22 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.8
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
++|.||+|+||||
T Consensus 13 i~lvGp~GvGKTT 25 (207)
T d1ls1a2 13 WFLVGLQGSGKTT 25 (207)
T ss_dssp EEEECCTTTTHHH
T ss_pred EEEECCCCCCHHH
Confidence 5789999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.93 E-value=0.018 Score=46.08 Aligned_cols=31 Identities=3% Similarity=-0.039 Sum_probs=22.0
Q ss_pred HHHhhhcCCCchh---hhhhcCC---ceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS---ATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l 113 (317)
+++.|+||+|||| ++|+.++ .....++....
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~ 41 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 41 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccce
Confidence 4578999999999 7887664 44555555443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=93.79 E-value=0.014 Score=43.28 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=11.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|+|+|||.
T Consensus 10 ~il~~~tGsGKT~ 22 (140)
T d1yksa1 10 TVLDFHPGAGKTR 22 (140)
T ss_dssp EEECCCTTSSTTT
T ss_pred EEEEcCCCCChhH
Confidence 4688999999997
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.70 E-value=0.012 Score=48.51 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=11.9
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
++|.||+|+||||
T Consensus 14 i~lvGptGvGKTT 26 (213)
T d1vmaa2 14 IMVVGVNGTGKTT 26 (213)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5689999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.081 Score=43.94 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=33.3
Q ss_pred hHHHhhhcCCCchh--------hhhhcCCc--------------eEEEEechhhhh----hhcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL--------AVANQTSA--------------TFLRVVGSELIQ----KYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~--------aiA~~~~~--------------~~~~v~~s~l~~----~~~g~~~~~l~~~f~~a~~~ 135 (317)
..++.||...|||+ .+-.++|. -|.++...+=+. .|..| -+.++.+++.+.+
T Consensus 43 ~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E-~~~~~~il~~~~~- 120 (234)
T d1wb9a2 43 MLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVE-MTETANILHNATE- 120 (234)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHH-HHHHHHHHHHCCT-
T ss_pred EEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHH-HHHHHHHHHhccc-
Confidence 36799999999998 22223332 123333332111 11111 2345666665554
Q ss_pred CCceEeeccccc
Q psy7780 136 APSIVFIDEIDA 147 (317)
Q Consensus 136 ~P~Ii~iDEiD~ 147 (317)
.++++|||+-+
T Consensus 121 -~sLvliDE~~~ 131 (234)
T d1wb9a2 121 -YSLVLMDEIGR 131 (234)
T ss_dssp -TEEEEEESCCC
T ss_pred -ccEEeeccccc
Confidence 48999999853
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.019 Score=51.21 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=12.2
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.++.|+||||||+
T Consensus 165 ~~vI~G~pGTGKTt 178 (359)
T d1w36d1 165 ISVISGGPGTGKTT 178 (359)
T ss_dssp EEEEECCTTSTHHH
T ss_pred eEEEEcCCCCCcee
Confidence 45689999999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.24 Score=41.00 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||+|||+
T Consensus 31 ~~~i~G~~G~GKS~ 44 (274)
T d1nlfa_ 31 VGALVSPGGAGKSM 44 (274)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 56789999999998
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.0012 Score=52.92 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=17.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
++|.|+||+|||| ++|..++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999 88887754
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.99 E-value=0.014 Score=52.87 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=42.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEech-hhh-----h-hhcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGS-ELI-----Q-KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s-~l~-----~-~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|.+|+.||.|+|||| ++.+++ +.+++.+.-+ +.. . ...+............+.++.|.||++.|+-.
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd 238 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 238 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred ceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCC
Confidence 468999999999999 333333 3566666321 211 0 01112223456667778889999999999965
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.097 Score=42.33 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCceEeeccccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+...........++++++|.+..+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~ds~~~~~~~ 144 (251)
T d1szpa2 118 LDAAAQMMSESRFSLIVVDSVMALYRT 144 (251)
T ss_dssp HHHTHHHHHHSCEEEEEEETGGGGGSC
T ss_pred HHHHHHHhhccccceeeehhhhhhhhh
Confidence 333444555666788899988877644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.52 E-value=0.0057 Score=47.96 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+++.|+||+|||| .+++.+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999 666655
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.48 E-value=0.015 Score=51.16 Aligned_cols=64 Identities=9% Similarity=0.221 Sum_probs=43.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEe-chhhh-------hhhcCCchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVV-GSELI-------QKYLGDGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~-~s~l~-------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
.+|+.|++|+|||+ +++.+.. ..++.+. ..++. ....+..+-...+++..+.+..|..|++.|+
T Consensus 168 nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi 244 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 244 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred CEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence 46899999999999 7777764 2344442 22221 0112233445778888899999999999997
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.44 E-value=0.008 Score=51.36 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.2
Q ss_pred hhhHHHhhhcCCCchh
Q psy7780 80 VGSELIQKYLGDGPKL 95 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~ 95 (317)
.||.|+.|+||||||+
T Consensus 14 ~~~~lI~g~aGTGKTt 29 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTR 29 (306)
T ss_dssp SSEEEECCCTTSCHHH
T ss_pred CCCEEEEeeCCccHHH
Confidence 4677899999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.92 E-value=0.036 Score=45.26 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcC----CceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~ 115 (317)
+.|.|+||+|||| +++..+ +.+++.+++-.+..
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 4599999999999 566544 66888888776554
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.92 E-value=0.015 Score=45.53 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=20.2
Q ss_pred HHHhhhcCCCchh---hhhhcCC---ceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS---ATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s 111 (317)
++|.|+||+|||| .+|+.++ ..+..++.+
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~ 38 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3578999999999 7776663 445555443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=91.58 E-value=0.011 Score=50.92 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=14.7
Q ss_pred hhhHHHhhhcCCCchh
Q psy7780 80 VGSELIQKYLGDGPKL 95 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~ 95 (317)
.||.++.|+||||||+
T Consensus 24 ~g~~lV~g~aGSGKTt 39 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTR 39 (318)
T ss_dssp SSCEEEEECTTSCHHH
T ss_pred CCCEEEEecCCccHHH
Confidence 5788999999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=90.24 E-value=0.021 Score=43.91 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=14.5
Q ss_pred HHhhhcCCCchh---hhhhcC
Q psy7780 84 LIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~ 101 (317)
.|.|+||+|||| .+++++
T Consensus 6 ~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 6 AFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999 666553
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=88.92 E-value=0.34 Score=39.65 Aligned_cols=13 Identities=23% Similarity=-0.000 Sum_probs=12.1
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||...|||+
T Consensus 38 ~iiTGpN~~GKSt 50 (224)
T d1ewqa2 38 VLITGPNMAGKST 50 (224)
T ss_dssp EEEESCSSSSHHH
T ss_pred EEEECCCccccch
Confidence 6799999999998
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.85 E-value=0.086 Score=40.66 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.0
Q ss_pred HhhhcCCCchh---hhhhcC
Q psy7780 85 IQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~ 101 (317)
+.|+||+|||| .++.++
T Consensus 6 I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 6 VVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 67999999999 555443
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.66 E-value=0.11 Score=44.11 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=30.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..|+|||+||||+ ++++-+|..- .++.+. . -|..+.-..-.++++||.+
T Consensus 107 ~~l~G~~~tGKS~f~~~i~~~lg~~~-~~~~~~-------~-------~f~l~~l~~k~~~~~~e~~ 158 (267)
T d1u0ja_ 107 IWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTN-------E-------NFPFNDCVDKMVIWWEEGK 158 (267)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTC-------S-------SCTTGGGSSCSEEEECSCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcchh-hccccC-------C-------CccccccCCCEEEEEeCCC
Confidence 5689999999999 8888776532 222110 0 1333333334688999975
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.32 E-value=0.035 Score=44.21 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=17.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
|+++.||+|+|||+ .++++...
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCc
Confidence 56789999999999 67776643
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.92 E-value=0.24 Score=39.30 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=11.6
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|+|+|||+
T Consensus 43 ~il~apTGsGKT~ 55 (202)
T d2p6ra3 43 LLLAMPTAAGKTL 55 (202)
T ss_dssp EEEECSSHHHHHH
T ss_pred EEEEcCCCCchhH
Confidence 4689999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.48 E-value=0.073 Score=43.55 Aligned_cols=14 Identities=14% Similarity=0.136 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||+|||+
T Consensus 38 ~~li~G~pGsGKT~ 51 (254)
T d1pzna2 38 ITEVFGEFGSGKTQ 51 (254)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 47899999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.36 E-value=0.036 Score=44.33 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=18.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceE
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATF 105 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~ 105 (317)
|+.+.||+|+|||+ .++++.+-.|
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~ 28 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIF 28 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCce
Confidence 56789999999999 6777665444
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.35 Score=38.78 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=11.1
Q ss_pred ceEeecccccccc
Q psy7780 138 SIVFIDEIDAVGT 150 (317)
Q Consensus 138 ~Ii~iDEiD~l~~ 150 (317)
..+++||+|.++.
T Consensus 148 ~~lVlDEaD~ll~ 160 (206)
T d1veca_ 148 QMIVLDEADKLLS 160 (206)
T ss_dssp CEEEEETHHHHTS
T ss_pred ceEEEeccccccc
Confidence 4799999999974
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.055 Score=42.67 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.+++|+||+|||+
T Consensus 25 v~~i~G~~GsGKT~ 38 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQ 38 (242)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 46799999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=86.29 E-value=0.32 Score=36.65 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=11.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|+||+|||+
T Consensus 4 I~lvG~~nvGKSs 16 (161)
T d2gj8a1 4 VVIAGRPNAGKSS 16 (161)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999999
|
| >d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Histone-fold superfamily: Histone-fold family: Archaeal histone domain: Archaeal histone species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]
Probab=86.19 E-value=0.46 Score=31.01 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 269 GADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 269 ~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
---+..++++|...|...++.+|+.+|+..|+++
T Consensus 34 e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~ 67 (68)
T d1htaa_ 34 EEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence 3357788899999999999999999999999975
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=84.91 E-value=0.39 Score=41.64 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=19.0
Q ss_pred HHhhhcCCCchh---hhhhc-----CCceEEEEechh
Q psy7780 84 LIQKYLGDGPKL---AVANQ-----TSATFLRVVGSE 112 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~-----~~~~~~~v~~s~ 112 (317)
=+.|+||+|||| +++.. ...-++.++.+.
T Consensus 58 gitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss 94 (327)
T d2p67a1 58 GVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 94 (327)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence 478999999999 44433 245566666554
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=83.39 E-value=0.32 Score=38.80 Aligned_cols=30 Identities=7% Similarity=0.209 Sum_probs=21.7
Q ss_pred HhhhcCCCchh--hhhhcCCceEEEEechhhhhh
Q psy7780 85 IQKYLGDGPKL--AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 85 l~G~pGtGKT~--aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+.|.+|||||| -+..+.|++++. +-++...
T Consensus 7 ITG~igSGKStv~~~l~~~G~~vid--aD~i~~~ 38 (205)
T d1jjva_ 7 LTGGIGSGKTTIANLFTDLGVPLVD--ADVVARE 38 (205)
T ss_dssp EECSTTSCHHHHHHHHHTTTCCEEE--HHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHCCCeEEE--chHHHHH
Confidence 68999999999 555678988775 4344433
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.03 E-value=0.087 Score=42.96 Aligned_cols=14 Identities=7% Similarity=-0.149 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||||||+
T Consensus 39 ~~~i~G~~GsGKT~ 52 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQ 52 (258)
T ss_dssp EEEEECCTTCTHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=82.34 E-value=0.16 Score=39.85 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.8
Q ss_pred HhhhcCCCchh--hhhhcCCceEEE
Q psy7780 85 IQKYLGDGPKL--AVANQTSATFLR 107 (317)
Q Consensus 85 l~G~pGtGKT~--aiA~~~~~~~~~ 107 (317)
+.|++|+|||| -+..+.|++++.
T Consensus 8 itG~~gSGKstva~~l~~~g~~~~~ 32 (191)
T d1uf9a_ 8 ITGNIGSGKSTVAALLRSWGYPVLD 32 (191)
T ss_dssp EEECTTSCHHHHHHHHHHTTCCEEE
T ss_pred EECCCCCCHHHHHHHHHHCCCeEEE
Confidence 67999999999 333678877764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.97 E-value=0.087 Score=41.21 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=18.6
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
..++++.... .+.+.+.. .++..|++..|.....
T Consensus 125 ~~ivi~e~~~---~~~~~~~~--~~d~~i~l~~~~e~~~ 158 (198)
T d1rz3a_ 125 SDMIMIEGVF---LQRKEWRP--FFDFVVYLDCPREIRF 158 (198)
T ss_dssp CSEEEEEETT---TTSTTTGG--GCSEEEEECCC-----
T ss_pred ccccccccch---hccccccc--cceeeeeccCcHHHHH
Confidence 4466666543 34445555 6788999988865433
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.56 E-value=0.081 Score=41.57 Aligned_cols=20 Identities=5% Similarity=0.027 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
.+.+.||+|+|||+ .++++.
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 35688999999999 666655
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=81.55 E-value=0.19 Score=39.71 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=20.5
Q ss_pred eechh-hHHHhhhcCCCchh-hhh-hcCCceEEE
Q psy7780 77 LRVVG-SELIQKYLGDGPKL-AVA-NQTSATFLR 107 (317)
Q Consensus 77 ~~i~g-~~Ll~G~pGtGKT~-aiA-~~~~~~~~~ 107 (317)
-++.| .+||.|++|+|||+ |++ -+-|..++.
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~~g~~lv~ 43 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQRGHRLIA 43 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHHcCCeEEe
Confidence 34555 88999999999998 222 233655443
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.88 E-value=0.5 Score=38.22 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=11.6
Q ss_pred ceEeeccccccccc
Q psy7780 138 SIVFIDEIDAVGTK 151 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~ 151 (317)
..+++||+|.+...
T Consensus 157 ~~lVlDEaD~ll~~ 170 (218)
T d2g9na1 157 KMFVLDEADEMLSR 170 (218)
T ss_dssp CEEEEESHHHHHHT
T ss_pred eEEEeeecchhhcC
Confidence 58999999999753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=80.48 E-value=0.23 Score=38.90 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=16.8
Q ss_pred eEeechh-hHHHhhhcCCCchh
Q psy7780 75 TFLRVVG-SELIQKYLGDGPKL 95 (317)
Q Consensus 75 ~~~~i~g-~~Ll~G~pGtGKT~ 95 (317)
++-++.| .+||.|++|.|||+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~ 30 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSE 30 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHH
Confidence 3445555 89999999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=80.42 E-value=0.24 Score=39.16 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 268 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 268 s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
+|+++..+++.|++.-..+....-+..+|.+-+.+.+.+++
T Consensus 137 ~gR~~a~liE~Aa~n~~l~~~G~da~~~f~~~~~~~~~~~~ 177 (177)
T d1knxa2 137 PGRKTSEIIESAVIDFKLKHSGYNSALDFIENQKAILKRKK 177 (177)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHGGGGC
T ss_pred CCchHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhcC
Confidence 35566666666665443333345567888877777766543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.08 E-value=0.17 Score=40.46 Aligned_cols=19 Identities=5% Similarity=0.050 Sum_probs=15.9
Q ss_pred HhhhcCCCchh---hhhhcCCc
Q psy7780 85 IQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~ 103 (317)
+.|++|+|||| .+++.++.
T Consensus 7 I~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 7 VSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EECSTTSSHHHHHHHHHHHTTG
T ss_pred EECCCCCCHHHHHHHHHHHhch
Confidence 67999999999 68887764
|