Psyllid ID: psy7787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
Protein Sequence
MELFHPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWVATPEAECPQNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAPRTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFRLHPVKNGQTSSGFDLLSKTSRRSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Secondary Structure (PSIPRED)
cccccccEEEEcccccccccccccEEcccccccccEEEEEcccccccccccEEEEcccccccccEEcHHHHHccccccccccEEEEEccccccHHHHEEcccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHEEcEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccEEEEEccccEEEEEEEEEccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEccccccccEEcccccccccEEEEEcccccccccccEEEEcccccccccEEcHHHHHccccccccccEEEEEcccccccccHHcccccccccccccccHHHHHHccccccccccHHHHHHHcccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccHHEHHHHHHHHHHccccccccccccccccEEEEEccccccccccEEEEEccccccccEEHHHHHHHcccccccccEEEEEcccccccEEEEEcccEEEccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEcccccccccccccccccccccccccEHHHEEEccccccccccccHHHHHcHHcccccccccccccccEEEEEEccccccccccEEEEEccccccccEEHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHEEEEcHHHHHHHHHHcccccHHHHHEHHHHHHHHHHHHHHHEEEEccc
Coil and Loop (DISEMBL)
MELFHPTIFHISAIGRlcekcdgkcvicdsyvrpctlvricdecnygsyqgrcvicggpgvsdayyckectiqekdvstvepQFYELIGTKGLCLSTLVmapwvatpeaecpqnskliagkkkscgeldpgppewRNALSGFEKQMFEIEQHRLIVGLvdegggqaclptaprttdpgnrTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFrlhpvkngqtssgfdllsktsrrscplslGKILKlrlephshslgLTIGRlcekcdgkcvicdsyvrpctlvricdecnygsyqgrcvicggpgvsdayyckectiqekdvstvepQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Flexible Loop (DISEMBL)
MELFHPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWVATPEAECPQNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQaclptaprttdpgnrTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFrlhpvkngqtssgFDLLSKTSRRSCPLSLGKIlklrlephshslgLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Low Complexity Region (SEG)
MELFHPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWVATPEAECPQNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAPRTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFRLHPVKNGQTSSGFDLLSKTSRRSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Disordered region (IsUnstruct)
**LFHPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWVATPEA**************************RNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTA******GNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFRLHPVKN******FDLL*****RSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIG**
Disordered Region (DISOPRED)
***FHPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWV****************************PEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAPRTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDE***SSKTKAIKYSSSITSVHIFRLHPVKNGQTSSGFDLLSKTSRRSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Disordered Region (DISEMBL)
MELFHPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWVATPEAECPQNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAPRTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFRLHPVKNGQTSSGFDLLSKTSRRSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Disordered Region (DISPRO)
****HPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWVATPEAECPQNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAPRTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFRLHPVKN****SGFDLLSKTSRRSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELFHPTIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLSTLVMAPWVATPEAECPQNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAPRTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTRHYSVIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFRLHPVKNGQTSSGFDLLSKTSRRSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTYWDIFVNTLSTLSIATCLNGFGTCAEFMSVEYCYQRNWHKQAVTSVIIGLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	463	2.2.26 [Sep-21-2011]
P83871	110	PHD finger-like domain-co	yes	N/A	0.194	0.818	0.739	8e-32
P83870	110	PHD finger-like domain-co	yes	N/A	0.194	0.818	0.739	8e-32
Q7RTV0	110	PHD finger-like domain-co	yes	N/A	0.194	0.818	0.739	8e-32
Q9VMC8	111	Uncharacterized protein C	yes	N/A	0.194	0.810	0.717	7e-30
Q0WMV8	110	PHD finger-like domain-co	yes	N/A	0.194	0.818	0.695	2e-29
P0DI19	110	PHD finger-like domain-co	yes	N/A	0.194	0.818	0.695	2e-29
Q9UTB8	117	Pre-mRNA-splicing factor	yes	N/A	0.142	0.564	0.712	3e-21
Q06835	107	Pre-mRNA-splicing factor	yes	N/A	0.142	0.616	0.552	2e-12

>sp|P83871|PHF5A_RAT PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1

 Score =  138 bits (348), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%), Gaps = 2/92 (2%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           TIQEKD     P+   L G+    + +++  Y
Sbjct: 76  TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

Acts as a transcriptional regulator by binding to the GJA1/Cx43 promoter and enhancing its up-regulation by ESR1/ER-alpha. Also involved in pre-mRNA splicing.
Rattus norvegicus (taxid: 10116)

>sp|P83870|PHF5A_MOUSE PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1

 Score =  138 bits (348), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%), Gaps = 2/92 (2%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           TIQEKD     P+   L G+    + +++  Y
Sbjct: 76  TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

Acts as a transcriptional regulator by binding to the GJA1/Cx43 promoter and enhancing its up-regulation by ESR1/ER-alpha. Also involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q7RTV0|PHF5A_HUMAN PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1

 Score =  138 bits (348), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 75/92 (81%), Gaps = 2/92 (2%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           TIQEKD     P+   L G+    + +++  Y
Sbjct: 76  TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

Acts as a transcriptional regulator by binding to the GJA1/Cx43 promoter and enhancing its up-regulation by ESR1/ER-alpha. Also involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q9VMC8|PHF5_DROME Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2

 Score =  132 bits (331), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 73/92 (79%), Gaps = 2/92 (2%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEK DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCK C
Sbjct: 16  GVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSC 75

Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           TIQEKD     P+   L G+    + +++  Y
Sbjct: 76  TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

Drosophila melanogaster (taxid: 7227)

>sp|Q0WMV8|PHF5B_ARATH PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 73/92 (79%), Gaps = 2/92 (2%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVICGG G+SDAYYCKEC
Sbjct: 16  GIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKEC 75

Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           T QEKD     P+   L G+    + +++  Y
Sbjct: 76  TQQEKDRDGC-PKIVNL-GSAKTDLFYERKKY 105

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI19|PHF5A_ARATH PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g30000 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 73/92 (79%), Gaps = 2/92 (2%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVICGG G+SDAYYCKEC
Sbjct: 16  GIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKEC 75

Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           T QEKD     P+   L G+    + +++  Y
Sbjct: 76  TQQEKDRDGC-PKIVNL-GSAKTDLFYERKKY 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTB8|INI1_SCHPO Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ini1 PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 54/66 (81%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+T+G+LCE+CD KC ICDS+VRP TLVRICDEC +GS Q RC+ICG PGVSD YYC EC
Sbjct: 16  GITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSEC 75

Query: 382 TIQEKD 387
           T  E D
Sbjct: 76  TRMEYD 81

Required for pre-mRNA splicing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06835|RDS3_YEAST Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RDS3 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKE 380
           G+  G LCEKCDGKC ICDSYVRP   VR+C+ C++G     C+IC    GV+DA+YC E
Sbjct: 16  GVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWE 75

Query: 381 CTIQEKD 387
           C    KD
Sbjct: 76  CCRLGKD 82

Required for pre-mRNA splicing. Involved in regulation of drug sensitivity and may play a role in multidrug resistance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
345326915	297	PREDICTED: hypothetical protein LOC10007	0.341	0.531	0.496	5e-33
390458875	148	PREDICTED: uncharacterized protein LOC10	0.153	0.479	0.943	8e-33
395540714	293	PREDICTED: uncharacterized protein LOC10	0.295	0.467	0.529	7e-32
441618286	265	PREDICTED: uncharacterized protein LOC10	0.138	0.241	0.927	2e-31
444723806	255	PHD finger-like domain-containing protei	0.131	0.239	0.969	4e-31
221221114	93	PHD finger-like domain-containing protei	0.136	0.677	0.970	5e-31
426394608	127	PREDICTED: PHD finger-like domain-contai	0.166	0.606	0.858	6e-31
47226135	129	unnamed protein product [Tetraodon nigro	0.142	0.511	0.929	7e-31
403283214	88	PREDICTED: PHD finger-like domain-contai	0.138	0.727	0.956	8e-31
402884358	127	PREDICTED: PHD finger-like domain-contai	0.166	0.606	0.846	1e-30

>gi|345326915|ref|XP_001508365.2| PREDICTED: hypothetical protein LOC100077081 [Ornithorhynchus anatinus]

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 98/165 (59%), Gaps = 7/165 (4%)

Query: 253 EDEIFGSSKTKAIKYSSSITSVHI---FRLHPVKNGQTSSGFDLLS-KTSRRSCPLSLGK 308
           ED+ + S+ ++ I YS               P  +   +   +LL  K  +R  P  L  
Sbjct: 131 EDDTYKSTNSRQI-YSDEANECQFSGGANPQPALSADVAFDIELLKGKEKKRKRPFFLSN 189

Query: 309 ILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG 368
           +          SL   IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG
Sbjct: 190 VTFHMQRFFRESLVRAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG 249

Query: 369 GPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           GPGVSDAYYCKECTIQEKD     P+   L G+    + +++  Y
Sbjct: 250 GPGVSDAYYCKECTIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 292

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390458875|ref|XP_002743843.2| PREDICTED: uncharacterized protein LOC100388995 [Callithrix jacchus]

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 69/71 (97%)

Query: 7  TIFHISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYY 66
          TIF  +AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYY
Sbjct: 15 TIFDFAAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYY 74

Query: 67 CKECTIQEKDV 77
          CKECTIQEKD+
Sbjct: 75 CKECTIQEKDL 85

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395540714|ref|XP_003772296.1| PREDICTED: uncharacterized protein LOC100922752 [Sarcophilus harrisii]

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 95/155 (61%), Gaps = 18/155 (11%)

Query: 275 HIFRLHPVKNGQTSSGFDLLSKTSR--------RSCPLSLGKILKLRLEPHSHS------ 320
           +  R HPV N   +SGFD    + +          C L L  +  L   P + +      
Sbjct: 136 YFVRFHPVLNIGQNSGFDRDIDSFQFFAIPELLNVCALVLMVMETLVPPPLNAAPPVSGI 195

Query: 321 --LGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYC 378
             L   IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYC
Sbjct: 196 LHLPRAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYC 255

Query: 379 KECTIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
           KECTIQEKD     P+   L G+    + +++  Y
Sbjct: 256 KECTIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 288

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|441618286|ref|XP_003264671.2| PREDICTED: uncharacterized protein LOC100591091 [Nomascus leucogenys]

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 67/69 (97%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDVST 390
           TIQEKD+ +
Sbjct: 76  TIQEKDLRS 84

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444723806|gb|ELW64436.1| PHD finger-like domain-containing protein 5A [Tupaia chinensis]

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 65/66 (98%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKD 387
           TIQEKD
Sbjct: 76  TIQEKD 81

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221221114|gb|ACM09218.1| PHD finger-like domain-containing protein 5A [Salmo salar]

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 67/68 (98%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDVS 389
           TIQEKDVS
Sbjct: 76  TIQEKDVS 83

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426394608|ref|XP_004063584.1| PREDICTED: PHD finger-like domain-containing protein 5A isoform 2 [Gorilla gorilla gorilla]

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 71/78 (91%), Gaps = 1/78 (1%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDV-STVEPQFYEL 398
           TIQEKD+ S + P+   L
Sbjct: 76  TIQEKDLRSNISPKRSNL 93

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47226135|emb|CAG04509.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 67/71 (94%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDVSTVE 392
           TIQEKDV   E
Sbjct: 76  TIQEKDVGIRE 86

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403283214|ref|XP_003933021.1| PREDICTED: PHD finger-like domain-containing protein 5A [Saimiri boliviensis boliviensis]

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/69 (95%), Positives = 67/69 (97%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDVST 390
           TIQEKDVS 
Sbjct: 76  TIQEKDVSV 84

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402884358|ref|XP_003905653.1| PREDICTED: PHD finger-like domain-containing protein 5A [Papio anubis]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 71/78 (91%), Gaps = 1/78 (1%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16  GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query: 382 TIQEKDV-STVEPQFYEL 398
           TIQEKD+ + + P+   L
Sbjct: 76  TIQEKDLRNNISPKRSNL 93

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
UNIPROTKB|E1BV20	110	PHF5A "Uncharacterized protein	0.194	0.818	0.739	2.4e-35
UNIPROTKB|A4FV59	110	PHF5A "PHF5A protein" [Bos tau	0.194	0.818	0.739	2.4e-35
UNIPROTKB|Q7RTV0	110	PHF5A "PHD finger-like domain-	0.194	0.818	0.739	2.4e-35
MGI|MGI:2156864	110	Phf5a "PHD finger protein 5A"	0.194	0.818	0.739	2.4e-35
RGD|621555	110	Phf5a "PHD finger protein 5A"	0.194	0.818	0.739	2.4e-35
FB|FBgn0031822	111	CG9548 [Drosophila melanogaste	0.194	0.810	0.717	1.5e-33
TAIR|locus:2007432	110	AT1G07170 "AT1G07170" [Arabido	0.194	0.818	0.695	4.1e-33
TAIR|locus:2045698	110	AT2G30000 [Arabidopsis thalian	0.194	0.818	0.695	4.1e-33
WB|WBGene00004016	110	phf-5 [Caenorhabditis elegans	0.142	0.6	0.893	4.7e-32
DICTYBASE|DDB_G0284403	110	phf5a "PHD finger-like domain-	0.194	0.818	0.630	1.6e-29

UNIPROTKB|E1BV20 PHF5A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct:    16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             TIQEKD     P+   L G+    + +++  Y
Sbjct:    76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0005686 "U2 snRNP" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

UNIPROTKB|A4FV59 PHF5A "PHF5A protein" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct:    16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             TIQEKD     P+   L G+    + +++  Y
Sbjct:    76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

GO:0016607 "nuclear speck" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005686 "U2 snRNP" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|Q7RTV0 PHF5A "PHD finger-like domain-containing protein 5A" [Homo sapiens (taxid:9606)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct:    16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             TIQEKD     P+   L G+    + +++  Y
Sbjct:    76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005686 "U2 snRNP" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA;TAS

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0016607 "nuclear speck" evidence=ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:2156864 Phf5a "PHD finger protein 5A" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct:    16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             TIQEKD     P+   L G+    + +++  Y
Sbjct:    76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005686 "U2 snRNP" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0005730 "nucleolus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

RGD|621555 Phf5a "PHD finger protein 5A" [Rattus norvegicus (taxid:10116)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/92 (73%), Positives = 75/92 (81%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct:    16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             TIQEKD     P+   L G+    + +++  Y
Sbjct:    76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005686 "U2 snRNP" evidence=ISO;ISS

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=ISO;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0031822 CG9548 [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 66/92 (71%), Positives = 73/92 (79%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEK DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCK C
Sbjct:    16 GVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             TIQEKD     P+   L G+    + +++  Y
Sbjct:    76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

TAIR|locus:2007432 AT1G07170 "AT1G07170" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 64/92 (69%), Positives = 73/92 (79%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVICGG G+SDAYYCKEC
Sbjct:    16 GIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKEC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             T QEKD     P+   L G+    + +++  Y
Sbjct:    76 TQQEKDRDGC-PKIVNL-GSAKTDLFYERKKY 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0005689 "U12-type spliceosomal complex" evidence=ISS

TAIR|locus:2045698 AT2G30000 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 64/92 (69%), Positives = 73/92 (79%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVICGG G+SDAYYCKEC
Sbjct:    16 GIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKEC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             T QEKD     P+   L G+    + +++  Y
Sbjct:    76 TQQEKDRDGC-PKIVNL-GSAKTDLFYERKKY 105

GO:0005634 "nucleus" evidence=ISM

WB|WBGene00004016 phf-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 59/66 (89%), Positives = 63/66 (95%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGRLCEKCDG+CVICDS+VRPCTLVRIC+ECNYGSYQGRCVICGG GVSDAYYCKEC
Sbjct:    16 GIAIGRLCEKCDGRCVICDSHVRPCTLVRICEECNYGSYQGRCVICGGAGVSDAYYCKEC 75

Query:   382 TIQEKD 387
             TI EKD
Sbjct:    76 TILEKD 81

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

DICTYBASE|DDB_G0284403 phf5a "PHD finger-like domain-containing protein 5A" [Dictyostelium discoideum (taxid:44689)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query:   322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
             G+ IGR+C+KCDGKCVICDSYVRP TLVRICDECNYGS+QG+CVICGG GVSDAYYC  C
Sbjct:    16 GIAIGRVCDKCDGKCVICDSYVRPTTLVRICDECNYGSFQGKCVICGGQGVSDAYYCFAC 75

Query:   382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
             + +EKD     P+   L G+K   + +++  Y
Sbjct:    76 SREEKDRDGC-PKIVNLGGSK-IDLFYERKKY 105

GO:0003674 "molecular_function" evidence=ND

GO:0005686 "U2 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P83870	PHF5A_MOUSE	No assigned EC number	0.7391	0.1943	0.8181	yes	N/A
P83871	PHF5A_RAT	No assigned EC number	0.7391	0.1943	0.8181	yes	N/A
P0DI19	PHF5A_ARATH	No assigned EC number	0.6956	0.1943	0.8181	yes	N/A
Q0WMV8	PHF5B_ARATH	No assigned EC number	0.6956	0.1943	0.8181	yes	N/A
Q9UTB8	INI1_SCHPO	No assigned EC number	0.7121	0.1425	0.5641	yes	N/A
Q9VMC8	PHF5_DROME	No assigned EC number	0.7173	0.1943	0.8108	yes	N/A
Q06835	RDS3_YEAST	No assigned EC number	0.5522	0.1425	0.6168	yes	N/A
Q7RTV0	PHF5A_HUMAN	No assigned EC number	0.7391	0.1943	0.8181	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	463
pfam03660	105	pfam03660, PHF5, PHF5-like protein	1e-35
pfam03660	105	pfam03660, PHF5, PHF5-like protein	3e-35

>gnl|CDD|146345 pfam03660, PHF5, PHF5-like protein

 Score =  127 bits (320), Expect = 1e-35
 Identities = 49/66 (74%), Positives = 53/66 (80%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
           G  IGRLCEKCDGKC ICDSYVRP T VRICDEC++GS   +C+ICG PGVSDAYYC EC
Sbjct: 15  GTAIGRLCEKCDGKCPICDSYVRPTTKVRICDECSFGSLGNKCIICGSPGVSDAYYCWEC 74

Query: 382 TIQEKD 387
              EKD
Sbjct: 75  VRLEKD 80

This family of proteins the superfamily of PHD-finger proteins. At least one example, from mouse, may act as a chromatin-associated protein. The S. pombe ini1 gene is essential, required for splicing. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1. Length = 105

>gnl|CDD|146345 pfam03660, PHF5, PHF5-like protein

 Score =  126 bits (318), Expect = 3e-35
 Identities = 49/64 (76%), Positives = 53/64 (82%)

Query: 13 AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTI 72
          AIGRLCEKCDGKC ICDSYVRP T VRICDEC++GS   +C+ICG PGVSDAYYC EC  
Sbjct: 17 AIGRLCEKCDGKCPICDSYVRPTTKVRICDECSFGSLGNKCIICGSPGVSDAYYCWECVR 76

Query: 73 QEKD 76
           EKD
Sbjct: 77 LEKD 80

This family of proteins the superfamily of PHD-finger proteins. At least one example, from mouse, may act as a chromatin-associated protein. The S. pombe ini1 gene is essential, required for splicing. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	463
PF03660	106	PHF5: PHF5-like protein; InterPro: IPR005345 Phf5	100.0
KOG1705|consensus	110		100.0
PF03660	106	PHF5: PHF5-like protein; InterPro: IPR005345 Phf5	100.0
KOG1705|consensus	110		100.0
PRK11595	227	DNA utilization protein GntX; Provisional	82.71
PRK11595	227	DNA utilization protein GntX; Provisional	82.15
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	80.84

>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins

Probab=100.00  E-value=1.5e-45  Score=312.16  Aligned_cols=83  Identities=67%  Similarity=1.306  Sum_probs=56.1

Q ss_pred             CCCCCCcccc-----hhhhhhccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeC-CCCccccccchhhhhcc
Q psy7787           1 MELFHPTIFH-----ISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQE   74 (463)
Q Consensus         1 MSRHqpDLIm-----Gt~IGrLCeKCDGKCPICDSyVRP~tkVRICDeCSfGs~~~RCIICG-~pGvsDAYYC~ECv~LE   74 (463)
                      ||||||||||     |++||+||++||||||||||||||+++|||||+||||++++|||||| ++|++|||||+||++||
T Consensus         1 MsrH~~DLvmC~KqpG~~iG~lC~kCdGkCpiCDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~sdAYYC~eC~~lE   80 (106)
T PF03660_consen    1 MSRHQPDLVMCRKQPGTAIGRLCEKCDGKCPICDSYVRPCTKVRICDECSFGSLQGRCIICGSGPGVSDAYYCWECVRLE   80 (106)
T ss_dssp             -SS--TT--B----EEEEE-EE-GGGTT--TTT-------EE-EEEHHHHTSSTTSB-TTTSSSB--EE-EE-HHHHHHT
T ss_pred             CCccChhHhhhccCCcchhhhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCceEEEecCCCCcccceehhhhHhhh
Confidence            9999999999     99999999999999999999999999999999999999999999999 88999999999999999


Q ss_pred             cccCCCccc
Q psy7787          75 KDVSTVEPQ   83 (463)
Q Consensus        75 KDRDGc~~~   83 (463)
                      |||||||.-
T Consensus        81 KdRDGCPri   89 (106)
T PF03660_consen   81 KDRDGCPRI   89 (106)
T ss_dssp             STTS----B
T ss_pred             ccccCCcee
Confidence            999999864

At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.

>KOG1705|consensus

Probab=100.00  E-value=3.2e-44  Score=303.49  Aligned_cols=83  Identities=78%  Similarity=1.433  Sum_probs=81.6

Q ss_pred             CCCCCCcccc-----hhhhhhccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCccccccchhhhhccc
Q psy7787           1 MELFHPTIFH-----ISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEK   75 (463)
Q Consensus         1 MSRHqpDLIm-----Gt~IGrLCeKCDGKCPICDSyVRP~tkVRICDeCSfGs~~~RCIICG~pGvsDAYYC~ECv~LEK   75 (463)
                      ||||||||||     |+++|+||||||||||||||||||+|+|||||+|+||+++++|||||++|++||||||||+++||
T Consensus         1 MskHhpDLi~CrkQPGi~~G~LCEkCDgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d~~yc~ectr~ek   80 (110)
T KOG1705|consen    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSDAYYCKECTRQEK   80 (110)
T ss_pred             CCCcCCcEEEEecCCCchhhhhHHhcCCcccccccccccceeeeeehhcCCccccCceEEecCCcccchHHHHHHHhhcc
Confidence            9999999999     99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccc
Q psy7787          76 DVSTVEPQ   83 (463)
Q Consensus        76 DRDGc~~~   83 (463)
                      ||||||.-
T Consensus        81 drdgCpri   88 (110)
T KOG1705|consen   81 DRDGCPKI   88 (110)
T ss_pred             ccccChhh
Confidence            99999863

>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins

Probab=100.00  E-value=1.9e-42  Score=293.30  Aligned_cols=91  Identities=62%  Similarity=1.258  Sum_probs=57.6

Q ss_pred             CCCCCcchhccccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeC-CCCccccccchhhhhccccccccccee
Q psy7787         317 HSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQEKDVSTVEPQF  395 (463)
Q Consensus       317 ~~~~PGt~IGrLCeKCDGKCPICDSyVRP~tkVRICdeCSfGs~~~RCIICG-~pGvsdAYYC~ECvrLEKDRD~c~~~~  395 (463)
                      =+||||++||+||+|||||||||||||||+++|||||+||||++++|||||| ++|++|||||+||++||||||+| |.+
T Consensus        11 C~KqpG~~iG~lC~kCdGkCpiCDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~sdAYYC~eC~~lEKdRDGC-Pri   89 (106)
T PF03660_consen   11 CRKQPGTAIGRLCEKCDGKCPICDSYVRPCTKVRICDECSFGSLQGRCIICGSGPGVSDAYYCWECVRLEKDRDGC-PRI   89 (106)
T ss_dssp             ----EEEEE-EE-GGGTT--TTT-------EE-EEEHHHHTSSTTSB-TTTSSSB--EE-EE-HHHHHHTSTTS-----B
T ss_pred             hccCCcchhhhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCceEEEecCCCCcccceehhhhHhhhccccCC-cee
Confidence            4799999999999999999999999999999999999999999999999999 89999999999999999999999 999


Q ss_pred             eeeccccceeEEee
Q psy7787         396 YELIGTKGCSIVFQ  409 (463)
Q Consensus       396 ~~l~~~~~~s~~~~  409 (463)
                      +|+ |+.+....|.
T Consensus        90 iN~-Gs~r~d~~~~  102 (106)
T PF03660_consen   90 INV-GSSRTDRFYE  102 (106)
T ss_dssp             -S--SS-SSTT---
T ss_pred             Eec-cchhhhHHHH
Confidence            999 8776654443

At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.

>KOG1705|consensus

Probab=100.00  E-value=4.5e-41  Score=284.36  Aligned_cols=90  Identities=72%  Similarity=1.413  Sum_probs=85.1

Q ss_pred             CCCCCcchhccccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCccccccchhhhhcccccccccceee
Q psy7787         317 HSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFY  396 (463)
Q Consensus       317 ~~~~PGt~IGrLCeKCDGKCPICDSyVRP~tkVRICdeCSfGs~~~RCIICG~pGvsdAYYC~ECvrLEKDRD~c~~~~~  396 (463)
                      -+||||++||+||||||||||||||||||+++|||||+|+||+++++|||||++|++||||||||+++|||||+| |.+.
T Consensus        11 CrkQPGi~~G~LCEkCDgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d~~yc~ectr~ekdrdgC-pri~   89 (110)
T KOG1705|consen   11 CRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSDAYYCKECTRQEKDRDGC-PKIV   89 (110)
T ss_pred             EecCCCchhhhhHHhcCCcccccccccccceeeeeehhcCCccccCceEEecCCcccchHHHHHHHhhccccccC-hhhh
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             eeccccceeEEe
Q psy7787         397 ELIGTKGCSIVF  408 (463)
Q Consensus       397 ~l~~~~~~s~~~  408 (463)
                      || ||.+..+-|
T Consensus        90 nl-gS~r~d~~~  100 (110)
T KOG1705|consen   90 NL-GSSKTDLFY  100 (110)
T ss_pred             hc-ccccchHHH
Confidence            99 776665433

>PRK11595 DNA utilization protein GntX; Provisional

Probab=82.71  E-value=0.64  Score=42.61  Aligned_cols=49  Identities=24%  Similarity=0.580  Sum_probs=33.8

Q ss_pred             CccccccCCCCccceeEecCCCCCC--CcCCeeEEeCCCCccccccchhhhh
Q psy7787         334 GKCVICDSYVRPCTLVRICDECNYG--SYQGRCVICGGPGVSDAYYCKECTI  383 (463)
Q Consensus       334 GKCPICDSyVRP~tkVRICdeCSfG--s~~~RCIICG~pGvsdAYYC~ECvr  383 (463)
                      .+|++|+..+.+. +..||+.|.-.  .....|..||.+.....+.|.+|..
T Consensus         6 ~~C~~C~~~~~~~-~~~lC~~C~~~l~~~~~~C~~Cg~~~~~~~~~C~~C~~   56 (227)
T PRK11595          6 GLCWLCRMPLALS-HWGICSVCSRALRTLKTCCPQCGLPATHPHLPCGRCLQ   56 (227)
T ss_pred             CcCccCCCccCCC-CCcccHHHHhhCCcccCcCccCCCcCCCCCCCcHHHHc
Confidence            4799999776432 23499999522  2346899999865444567999954

>PRK11595 DNA utilization protein GntX; Provisional

Probab=82.15  E-value=0.68  Score=42.47  Aligned_cols=49  Identities=24%  Similarity=0.570  Sum_probs=33.8

Q ss_pred             CccccccCCCCccceeEecCCCCC--CCcCCeeEEeCCCCccccccchhhhh
Q psy7787          23 GKCVICDSYVRPCTLVRICDECNY--GSYQGRCVICGGPGVSDAYYCKECTI   72 (463)
Q Consensus        23 GKCPICDSyVRP~tkVRICDeCSf--Gs~~~RCIICG~pGvsDAYYC~ECv~   72 (463)
                      .+|++|+-.+.+. ...||+.|.-  ......|..||.+.....+.|.+|..
T Consensus         6 ~~C~~C~~~~~~~-~~~lC~~C~~~l~~~~~~C~~Cg~~~~~~~~~C~~C~~   56 (227)
T PRK11595          6 GLCWLCRMPLALS-HWGICSVCSRALRTLKTCCPQCGLPATHPHLPCGRCLQ   56 (227)
T ss_pred             CcCccCCCccCCC-CCcccHHHHhhCCcccCcCccCCCcCCCCCCCcHHHHc
Confidence            5799999776432 2349999952  22246899999875444567999944

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=80.84  E-value=0.44  Score=39.17  Aligned_cols=62  Identities=26%  Similarity=0.522  Sum_probs=34.6

Q ss_pred             CccccccCCCCccceeEecCCCCCC-CcCCeeEEeCCCC------ccccccchhhhhcccccccccceeeeeccccceeE
Q psy7787         334 GKCVICDSYVRPCTLVRICDECNYG-SYQGRCVICGGPG------VSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSI  406 (463)
Q Consensus       334 GKCPICDSyVRP~tkVRICdeCSfG-s~~~RCIICG~pG------vsdAYYC~ECvrLEKDRD~c~~~~~~l~~~~~~s~  406 (463)
                      -.||.|+..+.+....+.|+.|.-- .....|.-||.+-      ...-|.|..|              -+||+.+|..|
T Consensus         2 ~~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~c--------------~gLiSKkrV~f   67 (70)
T PF07191_consen    2 NTCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEVLKACGAVDYFCNHC--------------HGLISKKRVRF   67 (70)
T ss_dssp             -B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EEEEETTEEEEE-TTT--------------T-EE-TTTSEE
T ss_pred             CcCCCCCCccEEeCCEEECccccccceecccCCCcccHHHHHHHhcccceeeccC--------------CceeecceEEE
Confidence            3688999888888888888888743 2244555555432      1345777765              26888888888


Q ss_pred             Eee
Q psy7787         407 VFQ  409 (463)
Q Consensus       407 ~~~  409 (463)
                      +||
T Consensus        68 ~~q   70 (70)
T PF07191_consen   68 EFQ   70 (70)
T ss_dssp             EE-
T ss_pred             EeC
Confidence            875

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	463
2k0a_A	109	1h, 15n And 13c Chemical Shift Assignments For Rds3		2e-13

>pdb|2K0A|A Chain A, 1h, 15n And 13c Chemical Shift Assignments For Rds3 Protein Length = 109

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKE 380
           G+  G LCEKCDGKC ICDSYVRP   VR+C+ C++G     C+IC    GV+DA+YC E
Sbjct: 18  GVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWE 77
Query: 381 CTIQEKD 387
           C    KD
Sbjct: 78  CCRLGKD 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	463
2k0a_A	109	PRE-mRNA-splicing factor RDS3; zinc finger, topolo	3e-30
2k0a_A	109	PRE-mRNA-splicing factor RDS3; zinc finger, topolo	9e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae} Length = 109

 Score =  112 bits (281), Expect = 3e-30
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKE 380
           G+  G LCEKCDGKC ICDSYVRP   VR+C+ C++G     C+IC    GV+DA+YC E
Sbjct: 18  GVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWE 77

Query: 381 CTIQEKD 387
           C    KD
Sbjct: 78  CCRLGKD 84

>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae} Length = 109

 Score =  111 bits (278), Expect = 9e-30
 Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 12 SAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKEC 70
             G LCEKCDGKC ICDSYVRP   VR+C+ C++G     C+IC    GV+DA+YC EC
Sbjct: 19 VQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWEC 78

Query: 71 TIQEKD 76
              KD
Sbjct: 79 CRLGKD 84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 57/371 (15%), Positives = 113/371 (30%), Gaps = 91/371 (24%)

Query: 30  SYVRPCTLV--RICDECNYGSYQGRC---VICGGPGVSD---AYYCKECTIQEKDVSTVE 81
            Y   C LV   + +   + ++   C   +      V+D   A      ++    ++   
Sbjct: 242 PYEN-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 82  PQFYELIGTKGLCLSTLVMAPWVATPEAEC---PQNSKLIAGKKKSCGELDPGPPEWRNA 138
            +       K L L  L   P    P       P+   +IA        +  G   W N 
Sbjct: 301 DE------VKSLLLKYLDCRP-QDLPREVLTTNPRRLSIIAE------SIRDGLATWDN- 346

Query: 139 LSGFEKQMFEIEQHRLIVGLVDEGGGQACL----PTAPRT--TD----PGNRTIRTMMTM 188
              ++    + +   +I         ++ L    P   R         P +  I    T+
Sbjct: 347 ---WKHVNCD-KLTTII---------ESSLNVLEPAEYRKMFDRLSVFPPSAHI---PTI 390

Query: 189 LLQ-FWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFLNHIHTR-----HYS 242
           LL   W  +   DV ++     ++SL++  +Q    ++ +   +    +        H S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 243 VIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHI-FRLHPVKNGQTSSGF-----DL--L 294
           ++D  +   +  +          +Y  S    HI   L  +++ +  + F     D   L
Sbjct: 449 IVDH-YNIPKTFDSDDLIPPYLDQYFYS----HIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 295 SKTSRRS-----CPLSLGKILK-LRL--------EPHSHSLGLTIGRLCEKCDGKCVICD 340
            +  R          S+   L+ L+         +P    L   I     K +   +   
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 341 SYVRPCTLVRI 351
                  L+RI
Sbjct: 564 Y----TDLLRI 570

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	463
2k0a_A	109	PRE-mRNA-splicing factor RDS3; zinc finger, topolo	100.0
2k0a_A	109	PRE-mRNA-splicing factor RDS3; zinc finger, topolo	100.0
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	87.49

>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-45  Score=312.65  Aligned_cols=84  Identities=43%  Similarity=0.885  Sum_probs=82.0

Q ss_pred             CCCCCCcccc-----hhhhhhccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeC-CCCccccccchhhhhcc
Q psy7787           1 MELFHPTIFH-----ISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQE   74 (463)
Q Consensus         1 MSRHqpDLIm-----Gt~IGrLCeKCDGKCPICDSyVRP~tkVRICDeCSfGs~~~RCIICG-~pGvsDAYYC~ECv~LE   74 (463)
                      ||||||||||     |++||+||+|||||||||||||||+++||||||||||++++|||||| ++|++|||||+||++||
T Consensus         3 MsrH~~DLimC~KqpG~~iG~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~~lE   82 (109)
T 2k0a_A            3 SSRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLG   82 (109)
T ss_dssp             SSSCCTTCCBCCCCEEEEECEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHHHHT
T ss_pred             ccccCchhhhccCCCcchhhhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhhhhh
Confidence            9999999999     99999999999999999999999999999999999999999999999 89999999999999999


Q ss_pred             cccCCCccce
Q psy7787          75 KDVSTVEPQF   84 (463)
Q Consensus        75 KDRDGc~~~~   84 (463)
                      |||||||.-.
T Consensus        83 KDRDGCPrii   92 (109)
T 2k0a_A           83 KDKDGCPRIL   92 (109)
T ss_dssp             STTSCCCCBC
T ss_pred             ccccCCCeeE
Confidence            9999999643

>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-42  Score=293.88  Aligned_cols=90  Identities=46%  Similarity=0.969  Sum_probs=85.0

Q ss_pred             CCCCCcchhccccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeC-CCCccccccchhhhhccccccccccee
Q psy7787         317 HSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQEKDVSTVEPQF  395 (463)
Q Consensus       317 ~~~~PGt~IGrLCeKCDGKCPICDSyVRP~tkVRICdeCSfGs~~~RCIICG-~pGvsdAYYC~ECvrLEKDRD~c~~~~  395 (463)
                      =+||||++||+||+|||||||||||||||+++|||||+||||++++|||||| ++|++|||||+||++||||||+| |.+
T Consensus        13 C~KqpG~~iG~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~~lEKDRDGC-Pri   91 (109)
T 2k0a_A           13 CLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGC-PRI   91 (109)
T ss_dssp             CCCCEEEEECEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHHHHTSTTSCC-CCB
T ss_pred             ccCCCcchhhhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhhhhhccccCC-Cee
Confidence            4899999999999999999999999999999999999999999999999999 89999999999999999999999 999


Q ss_pred             eeeccccceeEEe
Q psy7787         396 YELIGTKGCSIVF  408 (463)
Q Consensus       396 ~~l~~~~~~s~~~  408 (463)
                      +|+ |+.+...-|
T Consensus        92 iN~-Gs~ktD~~y  103 (109)
T 2k0a_A           92 LNL-GSNRLDRHF  103 (109)
T ss_dssp             CSC-SSCSSTTCC
T ss_pred             Eec-CcchhhHHh
Confidence            999 777665433

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=87.49  E-value=0.55  Score=38.19  Aligned_cols=53  Identities=23%  Similarity=0.545  Sum_probs=33.3

Q ss_pred             cccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCccccccchhhhhcccccccccceeeeeccccceeEEeecc
Q psy7787         336 CVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKN  411 (463)
Q Consensus       336 CPICDSyVRP~tkVRICdeCSfGs~~~RCIICG~pGvsdAYYC~ECvrLEKDRD~c~~~~~~l~~~~~~s~~~~~~  411 (463)
                      |.-|++.+.+..   .|.+|..--  .+|--||+    ..|+|.+|-              +||+.+|..|+++..
T Consensus        21 C~~C~~~~~~~a---fCPeCgq~L--e~lkACGA----~~yFC~~C~--------------~LiSkkrv~f~~~~~   73 (81)
T 2jrp_A           21 CETCAKDFSLQA---LCPDCRQPL--QVLKACGA----VDYFCQNGH--------------GLISKKRVNFVISDQ   73 (81)
T ss_dssp             CTTTCCEEEEEE---ECSSSCSCC--CEEEETTE----EEECCTTTT--------------CCCCTTSSEEEECCS
T ss_pred             CccccccCCCcc---cCcchhhHH--HHHHhcCC----cCeeeccCC--------------CEeecceEEEEecch
Confidence            455555444332   666665433  44777775    289999884              578888887777643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00