Psyllid ID: psy778

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-----
MHFGIYQSIWVSDKKELEQVGLTTDGTVFSSLPLKRPKLMPPLNERVMLYVRQESDEIYTPLHVSPPTTQGLLNA
ccEEEEEEEEEccHHHHHHcccccccccccccccccccccccccccEEEEEEEccccccccccccccccHHcccc
cccEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccHHHHccc
MHFGIYQSIWVSDKKELEQvglttdgtvfsslplkrpklmpplneRVMLYVRqesdeiytplhvsppttqgllna
MHFGIYQSIWVSDKKELEQVGLTtdgtvfsslplkrpklmpplnERVMLYVRQESDeiytplhvsppttqgllna
MHFGIYQSIWVSDKKELEQVGLTTDGTVFSSlplkrpklmpplNERVMLYVRQESDEIYTPLHVSPPTTQGLLNA
**FGIYQSIWVSDKKELEQVGLTTDGTVFSSLPLK***LM*PLNERVMLYVRQE**EIYT***************
**FGIY*SIWVSDKKELE***************************RVMLYVRQESDEIYTPLHVSPPTTQGLL**
MHFGIYQSIWVSDKKELEQVGLTTDGTVFSSLPLKRPKLMPPLNERVMLYVRQESDEIYTPLHVSPPTTQGLLNA
*HFGIYQSIWVSDKKELEQVGLTT***VFSSLPL**PKLMPPLNERVMLYVRQESDEIYTPLHVSPPTTQGLLNA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHFGIYQSIWVSDKKELEQVGLTTDGTVFSSLPLKRPKLMPPLNERVMLYVRQESDEIYTPLHVSPPTTQGLLNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query75 2.2.26 [Sep-21-2011]
P130021333 Protein grainyhead OS=Dro no N/A 0.853 0.048 0.575 6e-13
>sp|P13002|ELF1_DROME Protein grainyhead OS=Drosophila melanogaster GN=grh PE=2 SV=3 Back     alignment and function desciption
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 2/66 (3%)

Query: 12   SDKKE--LEQVGLTTDGTVFSSLPLKRPKLMPPLNERVMLYVRQESDEIYTPLHVSPPTT 69
            +DKK+  L+Q  LT+        P+KR ++ PP +ERVMLYVRQE++E+YTPLHV PPTT
Sbjct: 1205 TDKKDHILDQNMLTSTPLTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTT 1264

Query: 70   QGLLNA 75
             GLLNA
Sbjct: 1265 IGLLNA 1270
Binds a CNS-specific regulatory element of the Dopa decarboxylase (Ddc) gene. Also interacts with sequences adjacent to other transcription units, including Ultrabithorax (Ubx) and engrailed (en). Activity in vivo may be required only at high levels transiently to activate the expression of Ddc in the CNS.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
270014556 628 hypothetical protein TcasGA2_TC004589 [T 0.84 0.100 0.616 1e-13
91076196 621 PREDICTED: similar to DNA binding protei 0.84 0.101 0.616 1e-13
195121704 1332 GI19118 [Drosophila mojavensis] gi|19391 0.853 0.048 0.575 2e-11
7939 1063 unnamed protein product [Drosophila mela 0.853 0.060 0.575 2e-11
28573539 1032 grainy head, isoform H [Drosophila melan 0.853 0.062 0.575 2e-11
28573543 1333 grainy head, isoform J [Drosophila melan 0.853 0.048 0.575 2e-11
28573537 1302 grainy head, isoform L [Drosophila melan 0.853 0.049 0.575 3e-11
194880891 888 GG21828 [Drosophila erecta] gi|190657773 0.853 0.072 0.575 3e-11
195029567 1344 GH22029 [Drosophila grimshawi] gi|193903 0.853 0.047 0.590 3e-11
28573541 1063 grainy head, isoform I [Drosophila melan 0.853 0.060 0.575 3e-11
>gi|270014556|gb|EFA11004.1| hypothetical protein TcasGA2_TC004589 [Tribolium castaneum] Back     alignment and taxonomy information
 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 10/73 (13%)

Query: 12  SDKKE-LEQVGLTTDGTVFSSLPLKRPKLM--------PPLNERVMLYVRQESDEIYTPL 62
           +DKK+ +    LTTDG+VFS  PLKR K++        PPL+ERVMLYVRQE D++YTPL
Sbjct: 494 ADKKDNILDNSLTTDGSVFSP-PLKRTKMLTGPGSAGPPPLHERVMLYVRQEVDDVYTPL 552

Query: 63  HVSPPTTQGLLNA 75
           HV PPTT GLLNA
Sbjct: 553 HVVPPTTAGLLNA 565

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91076196|ref|XP_972054.1| PREDICTED: similar to DNA binding protein elf-1 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195121704|ref|XP_002005360.1| GI19118 [Drosophila mojavensis] gi|193910428|gb|EDW09295.1| GI19118 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|7939|emb|CAA33692.1| unnamed protein product [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|28573539|ref|NP_476843.2| grainy head, isoform H [Drosophila melanogaster] gi|28380744|gb|AAM68468.2| grainy head, isoform H [Drosophila melanogaster] gi|117935519|gb|ABK57088.1| IP16310p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|28573543|ref|NP_476845.2| grainy head, isoform J [Drosophila melanogaster] gi|37999920|sp|P13002.3|ELF1_DROME RecName: Full=Protein grainyhead; AltName: Full=DNA-binding protein ELF-1; AltName: Full=Element I-binding activity; AltName: Full=Protein grainy-head; AltName: Full=Transcription factor NTF-1 gi|28380741|gb|AAM68467.2| grainy head, isoform J [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|28573537|ref|NP_476844.2| grainy head, isoform L [Drosophila melanogaster] gi|28380742|gb|AAF57784.3| grainy head, isoform L [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194880891|ref|XP_001974586.1| GG21828 [Drosophila erecta] gi|190657773|gb|EDV54986.1| GG21828 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195029567|ref|XP_001987643.1| GH22029 [Drosophila grimshawi] gi|193903643|gb|EDW02510.1| GH22029 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|28573541|ref|NP_476842.2| grainy head, isoform I [Drosophila melanogaster] gi|28380743|gb|AAF57782.3| grainy head, isoform I [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
FB|FBgn02592111333 grh "grainy head" [Drosophila 0.426 0.024 0.812 4.7e-08
FB|FBgn0259211 grh "grainy head" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 139 (54.0 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 26/32 (81%), Positives = 30/32 (93%)

Query:    44 NERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
             +ERVMLYVRQE++E+YTPLHV PPTT GLLNA
Sbjct:  1239 SERVMLYVRQENEEVYTPLHVVPPTTIGLLNA 1270


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       75        63   0.00091  102 3  11 23  0.43    28
                                                     29  0.42    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  87 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.89u 0.08s 6.97t   Elapsed:  00:00:05
  Total cpu time:  6.89u 0.08s 6.97t   Elapsed:  00:00:05
  Start:  Thu Aug 15 13:20:49 2013   End:  Thu Aug 15 13:20:54 2013
GO:0003677 "DNA binding" evidence=IDA
GO:0005634 "nucleus" evidence=NAS;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEP
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS
GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP
GO:0007009 "plasma membrane organization" evidence=IMP
GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP
GO:0007424 "open tracheal system development" evidence=IEP;TAS
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP
GO:0016044 "cellular membrane organization" evidence=TAS
GO:0007402 "ganglion mother cell fate determination" evidence=TAS
GO:0007419 "ventral cord development" evidence=NAS
GO:0035152 "regulation of tube architecture, open tracheal system" evidence=TAS
GO:0007428 "primary branching, open tracheal system" evidence=TAS
GO:0042127 "regulation of cell proliferation" evidence=IMP
GO:0007399 "nervous system development" evidence=IMP
GO:0003382 "epithelial cell morphogenesis" evidence=IMP
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0007464 "R3/R4 cell fate commitment" evidence=IMP
GO:0061041 "regulation of wound healing" evidence=IMP
GO:0040003 "chitin-based cuticle development" evidence=IMP
GO:0042052 "rhabdomere development" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 75
KOG4091|consensus463 98.98
>KOG4091|consensus Back     alignment and domain information 
Probab=98.98  E-value=1.6e-10  Score=93.61  Aligned_cols=49  Identities=41%  Similarity=0.680  Sum_probs=44.1

Q ss_pred             CccccCCCCCCCCCCCCccce-----eEEEecccccc--cccceeccCCCccccccC
Q psy778           26 GTVFSSLPLKRPKLMPPLNER-----VMLYVRQESDE--IYTPLHVSPPTTQGLLNA   75 (75)
Q Consensus        26 ~~~~~~pp~K~~k~~~p~~~R-----VLLYVRketee--VFdaLmL~~Ptl~GL~~A   75 (75)
                      ..+++ +|++..|+.+++++|     ||||||+|+|+  ||+||||++||+.||++|
T Consensus       348 li~~~-~~a~~~rm~~~~~~R~~~p~v~lYvr~e~e~~~vy~al~~~~~t~~gla~a  403 (463)
T KOG4091|consen  348 LIQIC-GPADGIRMFNSLSERIVRPRVTLYVRKESEQEYVYHALHLVPPTVSGLAEA  403 (463)
T ss_pred             hhhhc-CCcccccccCcccccccccceEEEEeccCCccccccchhccChhHHHHHHH
Confidence            45555 788888888889999     99999999999  999999999999999976

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00