Psyllid ID: psy779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50
Protein Sequence
MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDALIHPS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHcccccccccccccHHHcccccEEEcccHHHccccccccc
Coil and Loop (DISEMBL)
mtatgrkkmdelyhppcersefytmadttkppvlfspaedidkdalihps
Flexible Loop (DISEMBL)
mtatgrkkmdelyhppCERSEFYTMADTTKPPvlfspaedidkdalihps
Low Complexity Region (SEG)
MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDALIHPS
Disordered region (IsUnstruct)
**************************************************
Disordered Region (DISOPRED)
*************HPPCERSEFYTMADTTKPPVLFSPAEDIDKDALI***
Disordered Region (DISEMBL)
*********DELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDALIHPS
Disordered Region (DISPRO)
******KKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDID********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDALIHPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	50	2.2.26 [Sep-21-2011]
P13002	1333	Protein grainyhead OS=Dro	no	N/A	0.86	0.032	0.767	3e-12

>sp|P13002|ELF1_DROME Protein grainyhead OS=Drosophila melanogaster GN=grh PE=2 SV=3

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 1    MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
            MTATGRKK+DELYHP  +RSEFY M D  KPPVLFSPAED++K
Sbjct: 1090 MTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEK 1132

Binds a CNS-specific regulatory element of the Dopa decarboxylase (Ddc) gene. Also interacts with sequences adjacent to other transcription units, including Ultrabithorax (Ubx) and engrailed (en). Activity in vivo may be required only at high levels transiently to activate the expression of Ddc in the CNS.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	50
91076196	621	PREDICTED: similar to DNA binding protei	0.96	0.077	0.791	3e-14
270014556	628	hypothetical protein TcasGA2_TC004589 [T	0.86	0.068	0.860	3e-14
226069452	230	grainy head isoform a [Gryllus bimaculat	0.9	0.195	0.844	4e-14
226069454	275	grainy head isoform b [Gryllus bimaculat	0.9	0.163	0.822	2e-13
157104955	588	DNA binding protein elf-1 [Aedes aegypti	0.9	0.076	0.8	7e-13
158294389	1122	AGAP005564-PA [Anopheles gambiae str. PE	0.86	0.038	0.790	2e-12
357628240	688	hypothetical protein KGM_04625 [Danaus p	0.9	0.065	0.777	2e-12
158294391	638	AGAP005564-PB [Anopheles gambiae str. PE	0.86	0.067	0.790	3e-12
347965199	737	AGAP005564-PD [Anopheles gambiae str. PE	0.86	0.058	0.790	4e-12
347965201	166	AGAP005564-PC [Anopheles gambiae str. PE	0.86	0.259	0.790	4e-12

>gi|91076196|ref|XP_972054.1| PREDICTED: similar to DNA binding protein elf-1 [Tribolium castaneum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 41/48 (85%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDALIH 48
           MTATGRKK+DELYHP CERSEFY+M+D  KPPVLFSPAEDIDK    H
Sbjct: 398 MTATGRKKLDELYHPMCERSEFYSMSDLAKPPVLFSPAEDIDKGFYPH 445

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014556|gb|EFA11004.1| hypothetical protein TcasGA2_TC004589 [Tribolium castaneum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 40/43 (93%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
           MTATGRKK+DELYHP CERSEFY+M+D  KPPVLFSPAEDIDK
Sbjct: 398 MTATGRKKLDELYHPMCERSEFYSMSDLAKPPVLFSPAEDIDK 440

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226069452|dbj|BAH36943.1| grainy head isoform a [Gryllus bimaculatus]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 41/45 (91%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDA 45
           MTATGRKK+DELYHP  ERSEFY+M+D TKPPVLFSPAEDIDK A
Sbjct: 115 MTATGRKKLDELYHPAAERSEFYSMSDLTKPPVLFSPAEDIDKLA 159

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226069454|dbj|BAH36944.1| grainy head isoform b [Gryllus bimaculatus]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 40/45 (88%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDA 45
           MTATGRKK+DELYHP  ERSEFY+M+D TKPPVLFSPAED DK A
Sbjct: 115 MTATGRKKLDELYHPAAERSEFYSMSDLTKPPVLFSPAEDTDKLA 159

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104955|ref|XP_001648647.1| DNA binding protein elf-1 [Aedes aegypti] gi|108884139|gb|EAT48364.1| AAEL000577-PA [Aedes aegypti]

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDA 45
           MTATGRKK+DELYHP  +RSEFYTM+D  KPPVLFSP+EDIDK A
Sbjct: 367 MTATGRKKLDELYHPVVDRSEFYTMSDLMKPPVLFSPSEDIDKLA 411

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294389|ref|XP_001688681.1| AGAP005564-PA [Anopheles gambiae str. PEST] gi|157015541|gb|EDO63687.1| AGAP005564-PA [Anopheles gambiae str. PEST]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
           MTATGRKK+DELYHP  +RSEFY M+D  KPPVLFSP+EDIDK
Sbjct: 899 MTATGRKKLDELYHPVVDRSEFYGMSDLMKPPVLFSPSEDIDK 941

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628240|gb|EHJ77630.1| hypothetical protein KGM_04625 [Danaus plexippus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 40/45 (88%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDA 45
           M+AT RKK+DE+YHP  ERSEFY+MAD +KPPVLFSPAEDIDK A
Sbjct: 460 MSATNRKKLDEIYHPVTERSEFYSMADLSKPPVLFSPAEDIDKLA 504

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294391|ref|XP_315571.4| AGAP005564-PB [Anopheles gambiae str. PEST] gi|157015542|gb|EAA11971.4| AGAP005564-PB [Anopheles gambiae str. PEST]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
           MTATGRKK+DELYHP  +RSEFY M+D  KPPVLFSP+EDIDK
Sbjct: 416 MTATGRKKLDELYHPVVDRSEFYGMSDLMKPPVLFSPSEDIDK 458

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965199|ref|XP_003435727.1| AGAP005564-PD [Anopheles gambiae str. PEST] gi|333469379|gb|EGK97280.1| AGAP005564-PD [Anopheles gambiae str. PEST]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 1   MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
           MTATGRKK+DELYHP  +RSEFY M+D  KPPVLFSP+EDIDK
Sbjct: 515 MTATGRKKLDELYHPVVDRSEFYGMSDLMKPPVLFSPSEDIDK 557

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965201|ref|XP_003435728.1| AGAP005564-PC [Anopheles gambiae str. PEST] gi|333469378|gb|EGK97279.1| AGAP005564-PC [Anopheles gambiae str. PEST]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 1  MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
          MTATGRKK+DELYHP  +RSEFY M+D  KPPVLFSP+EDIDK
Sbjct: 1  MTATGRKKLDELYHPVVDRSEFYGMSDLMKPPVLFSPSEDIDK 43

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	50
FB|FBgn0259211	1333	grh "grainy head" [Drosophila	0.86	0.032	0.767	3.3e-12
WB|WBGene00001707	563	grh-1 [Caenorhabditis elegans	0.76	0.067	0.526	0.00011

FB|FBgn0259211 grh "grainy head" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query:     1 MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDK 43
             MTATGRKK+DELYHP  +RSEFY M D  KPPVLFSPAED++K
Sbjct:  1090 MTATGRKKLDELYHPVTDRSEFYGMQDFAKPPVLFSPAEDMEK 1132

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP

GO:0007009 "plasma membrane organization" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IEP;TAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0007402 "ganglion mother cell fate determination" evidence=TAS

GO:0007419 "ventral cord development" evidence=NAS

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=TAS

GO:0007428 "primary branching, open tracheal system" evidence=TAS

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0003382 "epithelial cell morphogenesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0061041 "regulation of wound healing" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

WB|WBGene00001707 grh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 20/38 (52%), Positives = 23/38 (60%)

Query:     5 GRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDID 42
             GRKK D  YH  CERSEFY M +  KP  LF   E+ +
Sbjct:   397 GRKKSDGEYHDQCERSEFYHMRELDKPAALFIAPEEFE 434


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       50        50   0.00091  102 3  11 22  0.42    27
                                                     29  0.41    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  458 (49 KB)
  Total size of DFA:  77 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.64u 0.07s 6.71t   Elapsed:  00:00:11
  Total cpu time:  6.64u 0.07s 6.71t   Elapsed:  00:00:14
  Start:  Thu Aug 15 13:33:50 2013   End:  Thu Aug 15 13:34:04 2013

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	50
KOG4091|consensus	463		98.06

>KOG4091|consensus

Probab=98.06  E-value=1.7e-06  Score=65.56  Aligned_cols=45  Identities=20%  Similarity=0.149  Sum_probs=42.2

Q ss_pred             CccccccccccccCCcccccceeecccCCCCCeeeCCcccccccc
Q psy779            1 MTATGRKKMDELYHPPCERSEFYTMADTTKPPVLFSPAEDIDKDA   45 (50)
Q Consensus         1 mtatgRKK~delYH~~ceRSeFY~M~Dl~Kpp~lFsp~ed~dk~~   45 (50)
                      |+.++||++.+.|||...|+|||.|.|+.+|+|.|+|+.|....+
T Consensus       250 ir~~~rk~~~~~~~~~~~~te~~~~~d~~~~~v~~s~~~~~~~~~  294 (463)
T KOG4091|consen  250 IRDEERKEQYQPSYGTTILTECSPWPDIAEPDVPNSPSPDHTYSS  294 (463)
T ss_pred             cccHHHHhhccccCcceeeeeccCCcccccccCCCCcCcCccccc
Confidence            678999999999999999999999999999999999999986664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	50
d1g47a1	35	Pinch (particularly interesting new Cys-His) prote	84.16

>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.12  Score=26.27  Aligned_cols=9  Identities=56%  Similarity=1.114  Sum_probs=7.5

Q ss_pred             cccccCCcc
Q psy779            9 MDELYHPPC   17 (50)
Q Consensus         9 ~delYH~~c   17 (50)
                      --||||++|
T Consensus        27 nGEl~H~qC   35 (35)
T d1g47a1          27 NGELYHEQC   35 (35)
T ss_dssp             TTEEECTTT
T ss_pred             CCccccccC
Confidence            358999998