Psyllid ID: psy7862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
PYLSGLPDSVRAHQVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPASAM
Secondary Structure (PSIPRED)
cccccccHHHHHcccccccccccEEEEEEEccccccEEEEEEEEcccccEEEEcccccccccccEEcccccccccccHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEEccccccccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
pylsglpdsvrahqvdltggsdqvylieyfpyFPLITMYLMYYLGedgkrvytlkkvdpagnptvsahparfspddkysrERITILRRFGllrtqqpasam
Flexible Loop (DISEMBL)
pylsglpdsvRAHQVdltggsdqvyLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDpagnptvsahparfspddkysrERITILrrfgllrtqqpasam
Low Complexity Region (SEG)
PYLSGLPDSVRAHQVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPASAM
Disordered region (IsUnstruct)
**************VDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKV************************RITILRRFGLL*********
Disordered Region (DISOPRED)
****G**D****************YLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ*****
Disordered Region (DISEMBL)
PYLSGLPDSVRAHQVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLR********
Disordered Region (DISPRO)
*******D********LTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGNPTV***P*RFSPDDKYSRERITILRRFGLLRTQQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PYLSGLPDSVRAHQVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPASAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q6DRH5	64	H/ACA ribonucleoprotein c	yes	N/A	0.594	0.937	0.75	2e-21
Q9CQS2	64	H/ACA ribonucleoprotein c	yes	N/A	0.594	0.937	0.733	3e-19
Q9NPE3	64	H/ACA ribonucleoprotein c	yes	N/A	0.594	0.937	0.733	3e-19
Q9V5P6	64	H/ACA ribonucleoprotein c	yes	N/A	0.594	0.937	0.7	4e-18
Q9P7M5	64	H/ACA ribonucleoprotein c	yes	N/A	0.613	0.968	0.677	1e-17
Q54J26	64	H/ACA ribonucleoprotein c	yes	N/A	0.594	0.937	0.7	3e-17
Q74Z52	57	H/ACA ribonucleoprotein c	no	N/A	0.544	0.964	0.727	8e-17
Q6Q547	58	H/ACA ribonucleoprotein c	yes	N/A	0.544	0.948	0.709	8e-17
Q6BQP3	58	H/ACA ribonucleoprotein c	yes	N/A	0.574	1.0	0.706	1e-16
Q6JZK2	63	H/ACA ribonucleoprotein c	N/A	N/A	0.574	0.920	0.661	1e-15

>sp|Q6DRH5|NOP10_DANRE H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 53/60 (88%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+L +YL E+G+RVYTLKKVDP+G PT SAHPARFSPDDK+SR R+TI +RFGLL TQQP
Sbjct: 1  MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
Danio rerio (taxid: 7955)

>sp|Q9CQS2|NOP10_MOUSE H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus GN=Nop10 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 47/60 (78%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+L YYL E G RVYTLKK DP G  T SAHPARFSPDDKYSR RITI +RF +L TQQP
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Required for ribosome biogenesis and telomere maintenance. Part of the H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Each rRNA can contain up to 100 pseudouridine ("psi") residues, which may serve to stabilize the conformation of rRNAs. May also be required for correct processing or intranuclear trafficking of TERC, the RNA component of the telomerase reverse transcriptase (TERT) holoenzyme.

Mus musculus (taxid: 10090)

>sp|Q9NPE3|NOP10_HUMAN H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens GN=NOP10 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 47/60 (78%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+L YYL E G RVYTLKK DP G  T SAHPARFSPDDKYSR RITI +RF +L TQQP
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Required for ribosome biogenesis and telomere maintenance. Part of the H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Each rRNA can contain up to 100 pseudouridine ("psi") residues, which may serve to stabilize the conformation of rRNAs. May also be required for correct processing or intranuclear trafficking of TERC, the RNA component of the telomerase reverse transcriptase (TERT) holoenzyme.

Homo sapiens (taxid: 9606)

>sp|Q9V5P6|NOP10_DROME H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster GN=CG7637 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 50/60 (83%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          MYLMY + E+G RVYTLKK    G PT+SAHPARFSP+DKYSR+R+TI +RFGLL TQ+P
Sbjct: 1  MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Drosophila melanogaster (taxid: 7227)

>sp|Q9P7M5|NOP10_SCHPO H/ACA ribonucleoprotein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop10 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+LMYYL ++GKRVYTLKKV P G  T S+HPARFSPDDKYSR+R T+ +RF +L TQ P
Sbjct: 1  MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60

Query: 98 AS 99
          A 
Sbjct: 61 AK 62

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54J26|NOP10_DICDI H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum GN=nop10 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 47/60 (78%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+LMYY  +DG+RVYTLKK  P    T SAHPARFS DDKYSRERI + +RFGLL TQQP
Sbjct: 1  MHLMYYNDKDGQRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQP 60

Required for ribosome biogenesis. Part of the H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q74Z52|NOP10_ASHGO H/ACA ribonucleoprotein complex subunit 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP10 PE=3 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 47/55 (85%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
          M+LMY LG DGKRVYTL+KV P+G  T SAHPARFSPDDKYSR+R+T+ RRF +L
Sbjct: 1  MHLMYTLGPDGKRVYTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDML 55

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6Q547|NOP10_YEAST H/ACA ribonucleoprotein complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP10 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 47/55 (85%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
          M+LMY LG DGKR+YTLKKV  +G  T SAHPARFSPDDKYSR+R+T+ +RFGL+
Sbjct: 1  MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLV 55

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. Essential for growth.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6BQP3|NOP10_DEBHA H/ACA ribonucleoprotein complex subunit 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NOP10 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 46/58 (79%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
          M+LMY LG DGKRVYTL K    G  T SAHPARFSPDDKYSR+R+T+ +RFGLL TQ
Sbjct: 1  MHLMYTLGPDGKRVYTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6JZK2|NOP10_TRYCR H/ACA ribonucleoprotein complex subunit 3-like protein OS=Trypanosoma cruzi PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96
          M+L  Y+  +GKR YTLKK+DP G PT+SAHPARFSPDDKYSR RITI RRF  L++++
Sbjct: 1  MHLQVYIV-NGKRQYTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKALKSEK 58

Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.

Trypanosoma cruzi (taxid: 5693)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
110749879	64	PREDICTED: H/ACA ribonucleoprotein compl	0.603	0.953	0.836	2e-22
340709165	64	PREDICTED: H/ACA ribonucleoprotein compl	0.594	0.937	0.816	4e-21
380022158	61	PREDICTED: H/ACA ribonucleoprotein compl	0.574	0.950	0.827	1e-20
91080289	64	PREDICTED: similar to predicted protein	0.594	0.937	0.8	1e-20
348669588	65	hypothetical protein PHYSODRAFT_522844 [	0.594	0.923	0.8	3e-20
307212211	64	H/ACA ribonucleoprotein complex subunit	0.623	0.984	0.761	4e-20
301093034	65	H/ACA ribonucleoprotein complex subunit	0.594	0.923	0.8	4e-20
387018102	64	H/ACA ribonucleoprotein complex subunit	0.594	0.937	0.75	5e-20
326437528	64	H/ACA ribonucleoprotein complex subunit	0.633	1.0	0.703	8e-20
51467984	64	H/ACA ribonucleoprotein complex subunit	0.594	0.937	0.75	8e-20

>gi|110749879|ref|XP_001120529.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like [Apis mellifera]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 55/61 (90%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          MYLMYYL EDG RVYTLKK+DP G PT+SAHPARFSP+DKYSRERIT+ RRFGLL TQQP
Sbjct: 1  MYLMYYLNEDGNRVYTLKKIDPNGKPTLSAHPARFSPEDKYSRERITLKRRFGLLLTQQP 60

Query: 98 A 98
          A
Sbjct: 61 A 61

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709165|ref|XP_003393183.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like [Bombus terrestris] gi|350413104|ref|XP_003489880.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like [Bombus impatiens] gi|383862393|ref|XP_003706668.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like [Megachile rotundata]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 54/60 (90%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          MYLMYYL E+G RVYTLKK+DP G PT+SAHPARFSP+DKYSRERIT+ RRFGLL TQQP
Sbjct: 1  MYLMYYLNENGDRVYTLKKMDPNGKPTLSAHPARFSPEDKYSRERITLKRRFGLLLTQQP 60

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022158|ref|XP_003694920.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like [Apis florea]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 52/58 (89%)

Query: 41 MYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPA 98
          MYYL EDG RVYTLKK+DP G PT+SAHPARFSP+DKYSRERIT+ RRFGLL TQQPA
Sbjct: 1  MYYLNEDGNRVYTLKKIDPNGKPTLSAHPARFSPEDKYSRERITLKRRFGLLLTQQPA 58

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080289|ref|XP_973962.1| PREDICTED: similar to predicted protein [Tribolium castaneum]

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 53/60 (88%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          MYLMYYL +DG RVYTL K DP+G PT+SAHPARFSP+DKYSRERITI +RFGLL TQQP
Sbjct: 1  MYLMYYLDKDGNRVYTLNKFDPSGKPTLSAHPARFSPEDKYSRERITIKKRFGLLMTQQP 60

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348669588|gb|EGZ09410.1| hypothetical protein PHYSODRAFT_522844 [Phytophthora sojae]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 52/60 (86%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+LMYYLGEDGKRVYTLKK  PAG PT SAHPARFSPDDK+S+ERIT  +RFGLL TQ P
Sbjct: 1  MHLMYYLGEDGKRVYTLKKETPAGAPTCSAHPARFSPDDKFSKERITTKKRFGLLPTQSP 60

Source: Phytophthora sojae

Species: Phytophthora sojae

Genus: Phytophthora

Order: Peronosporales

Superkingdom: Eukaryota

>gi|307212211|gb|EFN88045.1| H/ACA ribonucleoprotein complex subunit 3 [Harpegnathos saltator]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 53/63 (84%)

Query: 38  MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
           MYLMYYL  +G RVYTLKK+DP G PT+SAHPARFSP+DKYS+ERITI RRF LL TQQP
Sbjct: 1   MYLMYYLDTNGNRVYTLKKLDPTGKPTLSAHPARFSPEDKYSKERITIKRRFNLLLTQQP 60

Query: 98  ASA 100
             A
Sbjct: 61  LPA 63

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301093034|ref|XP_002997366.1| H/ACA ribonucleoprotein complex subunit 3 [Phytophthora infestans T30-4] gi|262110764|gb|EEY68816.1| H/ACA ribonucleoprotein complex subunit 3 [Phytophthora infestans T30-4]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 52/60 (86%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+LMYYLGEDGKRVYTLKK  PAG PT SAHPARFSPDDK+S+ERIT  +RFGLL TQ P
Sbjct: 1  MHLMYYLGEDGKRVYTLKKQTPAGAPTSSAHPARFSPDDKFSKERITTKKRFGLLPTQSP 60

Source: Phytophthora infestans T30-4

Species: Phytophthora infestans

Genus: Phytophthora

Order: Peronosporales

Superkingdom: Eukaryota

>gi|387018102|gb|AFJ51169.1| H/ACA ribonucleoprotein complex subunit 3-like [Crotalus adamanteus]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+L YY+ E G+R+YTLKKVDP+G PT SAHPARFSPDDKYSR RITI +RFG+L TQQP
Sbjct: 1  MFLQYYINEQGERIYTLKKVDPSGQPTCSAHPARFSPDDKYSRHRITIKKRFGVLMTQQP 60

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326437528|gb|EGD83098.1| H/ACA ribonucleoprotein complex subunit 3 [Salpingoeca sp. ATCC 50818]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 54/64 (84%)

Query: 38  MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
           M+LM+YL  +GKRVYTLKKVDP GNPT SAHPARFSPDD YSR R+T+ +RFG+L +QQP
Sbjct: 1   MFLMFYLDSEGKRVYTLKKVDPNGNPTQSAHPARFSPDDNYSRHRVTLKKRFGILPSQQP 60

Query: 98  ASAM 101
           A  +
Sbjct: 61  AKRL 64

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|51467984|ref|NP_001003868.1| H/ACA ribonucleoprotein complex subunit 3 [Danio rerio] gi|54036181|sp|Q6DRH5.1|NOP10_DANRE RecName: Full=H/ACA ribonucleoprotein complex subunit 3; AltName: Full=Nucleolar protein 10; AltName: Full=Nucleolar protein family A member 3; AltName: Full=snoRNP protein NOP10 gi|49619035|gb|AAT68102.1| Nop10 [Danio rerio] gi|63102350|gb|AAH95081.1| NOP10 ribonucleoprotein homolog (yeast) [Danio rerio]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 53/60 (88%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
          M+L +YL E+G+RVYTLKKVDP+G PT SAHPARFSPDDK+SR R+TI +RFGLL TQQP
Sbjct: 1  MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
ZFIN|ZDB-GENE-041007-4	64	nop10 "NOP10 ribonucleoprotein	0.594	0.937	0.75	3.9e-21
UNIPROTKB|Q3ZBF2	64	NOP10 "NOP10 ribonucleoprotein	0.594	0.937	0.733	1.2e-19
UNIPROTKB|Q9NPE3	64	NOP10 "H/ACA ribonucleoprotein	0.594	0.937	0.733	3.1e-19
MGI|MGI:1913431	64	Nop10 "NOP10 ribonucleoprotein	0.594	0.937	0.733	3.1e-19
ASPGD|ASPL0000010487	67	nop10 [Emericella nidulans (ta	0.584	0.880	0.728	6.5e-19
POMBASE|SPAP27G11.13c	64	nop10 "snoRNP pseudouridylase	0.603	0.953	0.688	1.7e-18
DICTYBASE|DDB_G0288347	64	nola3 "Nop10 family protein" [	0.594	0.937	0.7	2e-17
SGD|S000007455	58	NOP10 "Constituent of small nu	0.574	1.0	0.689	2.5e-17
TAIR|locus:2054804	64	NOP10 "AT2G20490" [Arabidopsis	0.574	0.906	0.620	2.6e-15
WB|WBGene00007708	64	nola-3 [Caenorhabditis elegans	0.584	0.921	0.593	1.8e-14

ZFIN|ZDB-GENE-041007-4 nop10 "NOP10 ribonucleoprotein homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 45/60 (75%), Positives = 53/60 (88%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
             M+L +YL E+G+RVYTLKKVDP+G PT SAHPARFSPDDK+SR R+TI +RFGLL TQQP
Sbjct:     1 MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

GO:0060215 "primitive hemopoiesis" evidence=IMP

GO:0006364 "rRNA processing" evidence=IEA;IMP

GO:0005634 "nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q3ZBF2 NOP10 "NOP10 ribonucleoprotein homolog (Yeast)" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 44/60 (73%), Positives = 49/60 (81%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
             M+L YYL E G+RVYTLKK+DP G  T SAHPARFSPDDKYSR RITI +RF +L TQQP
Sbjct:     1 MFLQYYLNEQGERVYTLKKLDPLGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9NPE3 NOP10 "H/ACA ribonucleoprotein complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/60 (73%), Positives = 47/60 (78%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
             M+L YYL E G RVYTLKK DP G  T SAHPARFSPDDKYSR RITI +RF +L TQQP
Sbjct:     1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=TAS

GO:0001522 "pseudouridine synthesis" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1913431 Nop10 "NOP10 ribonucleoprotein" [Mus musculus (taxid:10090)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/60 (73%), Positives = 47/60 (78%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
             M+L YYL E G RVYTLKK DP G  T SAHPARFSPDDKYSR RITI +RF +L TQQP
Sbjct:     1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

ASPGD|ASPL0000010487 nop10 [Emericella nidulans (taxid:162425)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96
             M+LMY L +DGKRVYTLKKV P G  T SAHPARFSPDDKYSR R+T+ +R+GLL TQQ
Sbjct:     1 MHLMYTLDQDGKRVYTLKKVTPTGEVTKSAHPARFSPDDKYSRHRVTLKKRYGLLLTQQ 59

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0000469 "cleavage involved in rRNA processing" evidence=IEA

GO:0031118 "rRNA pseudouridine synthesis" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IEA

POMBASE|SPAP27G11.13c nop10 "snoRNP pseudouridylase box H/ACA snoRNP complex protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 42/61 (68%), Positives = 50/61 (81%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
             M+LMYYL ++GKRVYTLKKV P G  T S+HPARFSPDDKYSR+R T+ +RF +L TQ P
Sbjct:     1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60

Query:    98 A 98
             A
Sbjct:    61 A 61

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0019843 "rRNA binding" evidence=IC

GO:0031118 "rRNA pseudouridine synthesis" evidence=ISO

GO:0031120 "snRNA pseudouridine synthesis" evidence=ISO

GO:0031429 "box H/ACA snoRNP complex" evidence=ISO

GO:0034513 "box H/ACA snoRNA binding" evidence=ISO

DICTYBASE|DDB_G0288347 nola3 "Nop10 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 42/60 (70%), Positives = 47/60 (78%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
             M+LMYY  +DG+RVYTLKK  P    T SAHPARFS DDKYSRERI + +RFGLL TQQP
Sbjct:     1 MHLMYYNDKDGQRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQP 60

GO:0006364 "rRNA processing" evidence=IEA;IC

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000007455 NOP10 "Constituent of small nucleolar ribonucleoprotein particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/58 (68%), Positives = 48/58 (82%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
             M+LMY LG DGKR+YTLKKV  +G  T SAHPARFSPDDKYSR+R+T+ +RFGL+  Q
Sbjct:     1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58

GO:0003723 "RNA binding" evidence=IDA

GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP

GO:0005730 "nucleolus" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0031429 "box H/ACA snoRNP complex" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0000469 "cleavage involved in rRNA processing" evidence=IMP

TAIR|locus:2054804 NOP10 "AT2G20490" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
             MYL  Y+ E G++VYT KK  P G  T SAHPARFSPDDKYS++R+ + +RFGLL TQ
Sbjct:     1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQ 58

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0010197 "polar nucleus fusion" evidence=IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

WB|WBGene00007708 nola-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query:    38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96
             M+L Y+L E+ +RVYTLK+  P+G  T++AHPARFSP+DK S+ RI I +RFGLL TQ+
Sbjct:     1 MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 22  0.39    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  494 (53 KB)
  Total size of DFA:  100 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.82u 0.08s 10.90t   Elapsed:  00:00:05
  Total cpu time:  10.82u 0.08s 10.90t   Elapsed:  00:00:05
  Start:  Thu Aug 15 17:11:00 2013   End:  Thu Aug 15 17:11:05 2013

GO:0040010 "positive regulation of growth rate" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DRH5	NOP10_DANRE	No assigned EC number	0.75	0.5940	0.9375	yes	N/A
Q6BQP3	NOP10_DEBHA	No assigned EC number	0.7068	0.5742	1.0	yes	N/A
Q9XVR8	NOP10_CAEEL	No assigned EC number	0.5468	0.6336	1.0	yes	N/A
Q973G1	NOP10_SULTO	No assigned EC number	0.5365	0.3960	0.7142	yes	N/A
Q6CSZ0	NOP10_KLULA	No assigned EC number	0.6181	0.5445	0.9649	yes	N/A
Q6FNL3	NOP10_CANGA	No assigned EC number	0.6545	0.5445	0.9649	yes	N/A
Q6Q547	NOP10_YEAST	No assigned EC number	0.7090	0.5445	0.9482	yes	N/A
Q93XX8	NOP10_ARATH	No assigned EC number	0.6101	0.5841	0.9218	yes	N/A
Q9V5P6	NOP10_DROME	No assigned EC number	0.7	0.5940	0.9375	yes	N/A
Q9CQS2	NOP10_MOUSE	No assigned EC number	0.7333	0.5940	0.9375	yes	N/A
Q9NPE3	NOP10_HUMAN	No assigned EC number	0.7333	0.5940	0.9375	yes	N/A
A9A115	NOP10_NITMS	No assigned EC number	0.5882	0.3267	0.6470	yes	N/A
Q9P7M5	NOP10_SCHPO	No assigned EC number	0.6774	0.6138	0.9687	yes	N/A
Q54J26	NOP10_DICDI	No assigned EC number	0.7	0.5940	0.9375	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
pfam04135	52	pfam04135, Nop10p, Nucleolar RNA-binding protein,	3e-20
COG2260	59	COG2260, COG2260, Predicted Zn-ribbon RNA-binding	5e-15
PRK13130	56	PRK13130, PRK13130, H/ACA RNA-protein complex comp	1e-08

>gnl|CDD|217919 pfam04135, Nop10p, Nucleolar RNA-binding protein, Nop10p family

 Score = 76.1 bits (188), Expect = 3e-20
 Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 40 LMYYLG-EDGKRVYTLK-KVDPAGNPTVSAHPARFSPDDKYSRERITILRRF 89
          +   L    G RVYTLK K    G PT SAHPARFSP+DKY + R  + +RF
Sbjct: 1  MKSLLRKCPGCRVYTLKDKCPECGGPTKSAHPARFSPEDKYGKYRRALKKRF 52

Nop10p is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10p is probably necessary for the stability of these RNPs. Length = 52

>gnl|CDD|225169 COG2260, COG2260, Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]

 Score = 63.2 bits (154), Expect = 5e-15
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 38 MYLMYYLGEDGKRVYTLK-KVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
          M  +          YTLK K    G  T   HP RFSP+DKY + R  + +R GLL  Q
Sbjct: 1  MKSLIRKCPK-CGRYTLKEKCPVCGGDTKVPHPPRFSPEDKYGKYRRELKKRLGLLPNQ 58

Length = 59

>gnl|CDD|237287 PRK13130, PRK13130, H/ACA RNA-protein complex component Nop10p; Reviewed

 Score = 46.9 bits (112), Expect = 1e-08
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 51 VYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRR 88
          VYTLK++ P  G  T + HP RFSP+DKY + R  + +R
Sbjct: 13 VYTLKEICPVCGGKTKNPHPPRFSPEDKYGKYRRALKKR 51

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG3503|consensus	64		100.0
PF04135	53	Nop10p: Nucleolar RNA-binding protein, Nop10p fami	99.96
COG2260	59	Predicted Zn-ribbon RNA-binding protein [Translati	99.93
PRK13130	56	H/ACA RNA-protein complex component Nop10p; Review	99.9
TIGR00354	1095	polC DNA polymerase, archaeal type II, large subun	81.6

>KOG3503|consensus

Probab=100.00  E-value=2.1e-36  Score=200.33  Aligned_cols=63  Identities=73%  Similarity=1.225  Sum_probs=62.0

Q ss_pred             eEEEEEeCCCCceeeeecccCCCCCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCCCCCCC
Q psy7862          38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPASA  100 (101)
Q Consensus        38 M~L~yyl~e~gc~vYTLk~~CP~G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq~~~~~  100 (101)
                      |||||||||+|+++||||++.|.|+.|.+|||||||||||||++|+.||||||+||||+|+++
T Consensus         1 M~L~y~lne~g~rvYTlKk~~p~G~~T~saHPARFSPdDKySrqR~tlKKRFgll~tQ~p~~~   63 (64)
T KOG3503|consen    1 MFLMYYLNENGKRVYTLKKVSPSGEQTLSAHPARFSPDDKYSRQRITLKKRFGLLPTQKPKPV   63 (64)
T ss_pred             CeeEEEECCCCcEEEEEeecCCCCceecccCccccCccccccceeeeehhhhccccccCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999876

>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs

Probab=99.96  E-value=4.4e-30  Score=163.89  Aligned_cols=51  Identities=63%  Similarity=1.035  Sum_probs=46.6

Q ss_pred             EEEEe-CCCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhC
Q psy7862          40 LMYYL-GEDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFG   90 (101)
Q Consensus        40 L~yyl-~e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~g   90 (101)
                      |||++ ++++|++|||++.||. |++|.+|||||||||||||+|||+||+|||
T Consensus         1 m~~~~r~c~~~~~YTLk~~cp~cG~~T~~ahPaRFSPdDky~~yRi~lKkrfg   53 (53)
T PF04135_consen    1 MRYYIRKCPGCRVYTLKDKCPPCGGPTESAHPARFSPDDKYSKYRIALKKRFG   53 (53)
T ss_dssp             -EEEEEECTTTCEEESSSBBTTTSSBSEESSSSSS-TTTTTCHHHHHHHHHH-
T ss_pred             CCcccccCCCCCcEeCCCccCCCCCCCcCCcCCCCCCCCccHHHHHHHHhhcC
Confidence            57888 9999999999999997 999999999999999999999999999997

More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....

>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.3e-26  Score=151.71  Aligned_cols=57  Identities=40%  Similarity=0.596  Sum_probs=52.9

Q ss_pred             eEEEEEeCCCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCC
Q psy7862          38 MYLMYYLGEDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ   95 (101)
Q Consensus        38 M~L~yyl~e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq   95 (101)
                      |.+++....+ |++|||++.||. |+.|.+||||||||||||+|||++||+++++++.|
T Consensus         1 M~~~~rkC~~-cg~YTLke~Cp~CG~~t~~~~PprFSPeD~y~kYR~~lkk~~~~~~~~   58 (59)
T COG2260           1 MKSLIRKCPK-CGRYTLKEKCPVCGGDTKVPHPPRFSPEDKYGKYRRELKKRLGLLPNQ   58 (59)
T ss_pred             CcchhhcCcC-CCceeecccCCCCCCccccCCCCCCCccchHHHHHHHHHHHhccccCC
Confidence            6677777765 999999999998 99999999999999999999999999999999986

>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed

Probab=99.90  E-value=1.3e-24  Score=139.74  Aligned_cols=47  Identities=43%  Similarity=0.649  Sum_probs=44.3

Q ss_pred             CCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhCCC
Q psy7862          46 EDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLL   92 (101)
Q Consensus        46 e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~glL   92 (101)
                      ...|++|||++.||. |++|.+|||||||||||||+|||+||||.++-
T Consensus         8 C~~CgvYTLk~~CP~CG~~t~~~~P~rfSp~D~y~~yR~~~kk~~~~~   55 (56)
T PRK13130          8 CPKCGVYTLKEICPVCGGKTKNPHPPRFSPEDKYGKYRRALKKRRKLN   55 (56)
T ss_pred             CCCCCCEEccccCcCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhhcC
Confidence            568999999999997 99999999999999999999999999998863

>TIGR00354 polC DNA polymerase, archaeal type II, large subunit

Probab=81.60  E-value=0.77  Score=43.75  Aligned_cols=46  Identities=11%  Similarity=-0.096  Sum_probs=32.6

Q ss_pred             cceEEEEEeCCCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHH
Q psy7862          36 ITMYLMYYLGEDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITI   85 (101)
Q Consensus        36 ~~M~L~yyl~e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~L   85 (101)
                      +.+.++.   ...|+.||++..||+ |+.|..+||.+.+- |--..|++++
T Consensus       621 vev~~RK---CPkCG~yTlk~rCP~CG~~Te~~~pc~~~i-~l~~~~~~A~  667 (1095)
T TIGR00354       621 VEIAIRK---CPQCGKESFWLKCPVCGELTEQLYYGKRKV-DLRELYEEAI  667 (1095)
T ss_pred             EEEEEEE---CCCCCcccccccCCCCCCccccccceeEEe-cHHHHHHHHH
Confidence            3445555   789999999999995 99999999995432 2223444443

This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
1y2y_A	58	Structural Characterization Of Nop10p Using Nuclear		6e-18
2aqa_A	63	Nmr Structural Analysis Of Nop10p From Saccharomyce		3e-17

>pdb|1Y2Y|A Chain A, Structural Characterization Of Nop10p Using Nuclear Magnetic Resonance Spectroscopy Length = 58

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
          M+LMY LG DGKR+YTLKKV  +G  T SAHPARFSPDDKYSR+R+T+ +RFGL+
Sbjct: 1  MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLV 55

>pdb|2AQA|A Chain A, Nmr Structural Analysis Of Nop10p From Saccharomyces Cerevisiae Length = 63

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 46/54 (85%)
Query: 39 YLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
          +LMY LG DGKR+YTLKKV  +G  T SAHPARFSPDDKYSR+R+T+ +RFGL+
Sbjct: 1  HLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLV 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
1y2y_A	58	Ribosome biogenesis protein NOP10; box H/ACA snoRN	6e-31
2aus_D	60	NOP10, ribosome biogenesis protein NOP10; isomeras	7e-16
2apo_B	60	Ribosome biogenesis protein NOP10; protein-protein	2e-14

>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A Length = 58

 Score =  103 bits (257), Expect = 6e-31
 Identities = 40/58 (68%), Positives = 48/58 (82%)

Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
          M+LMY LG DGKR+YTLKKV  +G  T SAHPARFSPDDKYSR+R+T+ +RFGL+  Q
Sbjct: 1  MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58

>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B Length = 60

 Score = 64.8 bits (158), Expect = 7e-16
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96
            YTLK+  P  G  T  AHP RFSP+D Y   R  + R    +  ++
Sbjct: 12 GRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKE 59

>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A Length = 60

 Score = 61.0 bits (148), Expect = 2e-14
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFG 90
           +YTLK++ P  G  TV   P +FS +D++ + R  + R   
Sbjct: 13 GLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALK 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
1y2y_A	58	Ribosome biogenesis protein NOP10; box H/ACA snoRN	100.0
2aus_D	60	NOP10, ribosome biogenesis protein NOP10; isomeras	99.93
2apo_B	60	Ribosome biogenesis protein NOP10; protein-protein	99.92

>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A

Probab=100.00  E-value=6.7e-39  Score=207.80  Aligned_cols=58  Identities=69%  Similarity=1.083  Sum_probs=57.5

Q ss_pred             eEEEEEeCCCCceeeeecccCCCCCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCC
Q psy7862          38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ   95 (101)
Q Consensus        38 M~L~yyl~e~gc~vYTLk~~CP~G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq   95 (101)
                      ||||||+|++||++|||+++||.|++|.+|||||||||||||+|||+||||||+||||
T Consensus         1 m~l~y~~~~~g~~~YTLk~~cP~G~~T~sahPaRFSPdDky~~yR~~lKkrfgll~tq   58 (58)
T 1y2y_A            1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ   58 (58)
T ss_dssp             CCCBCCCSSSSSCCCBCCSTTCSSSSSSSSCSSSSCSCTTCSCTTSTTSSSCCCCCCC
T ss_pred             CeEEEEeCCCCCeeeeccccCCCCCccccCCCCCCCCCcccHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999998

>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B

Probab=99.93  E-value=1.6e-26  Score=149.72  Aligned_cols=50  Identities=36%  Similarity=0.494  Sum_probs=46.2

Q ss_pred             CCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCC
Q psy7862          46 EDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ   95 (101)
Q Consensus        46 e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq   95 (101)
                      ...|++|||++.||. |++|.+|||||||||||||+|||+||+|||.+++.
T Consensus         8 C~~Cg~YTLk~~CP~CG~~t~~ahParfSP~Dky~~yR~~lKk~~~~~~~~   58 (60)
T 2aus_D            8 CPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRK   58 (60)
T ss_dssp             CTTTCCEESSSBCTTTCSBCEESSCCCCCSCCTTHHHHHHHHHHHTTCC--
T ss_pred             CCCCCCEEccccCcCCCCccCCCCCCCCCCCCchHHHHHHHHHHhcccccC
Confidence            678999999999994 99999999999999999999999999999999864

>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A

Probab=99.92  E-value=3.9e-26  Score=147.67  Aligned_cols=48  Identities=29%  Similarity=0.457  Sum_probs=45.9

Q ss_pred             CCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhCCCC
Q psy7862          46 EDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLLR   93 (101)
Q Consensus        46 e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~glLp   93 (101)
                      ...|++|||++.||. |++|.+|||||||||||||+|||+||+|||+..
T Consensus         9 C~~CgvYTLk~~CP~CG~~T~~~hParfSp~Dky~~yR~~~kk~~~~~~   57 (60)
T 2apo_B            9 CPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKN   57 (60)
T ss_dssp             CTTTCCEESSSBCSSSCSBCBCCCCCCCCTTCTTHHHHHHHHHHHHTCC
T ss_pred             CCCCCCEeccccCcCCCCcCCCCCCCCCCCCcchHHHHHHHHHHhcccc
Confidence            678999999999997 999999999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d2aqaa1	57	g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex	3e-30
d2apob1	55	g.41.16.1 (B:403-457) Ribosome biogenesis protein	4e-15
d2ey4e1	52	g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop	1e-14

>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 57

class: Small proteins
fold: Rubredoxin-like
superfamily: Nop10-like SnoRNP
family: Nucleolar RNA-binding protein Nop10-like
domain: H/aca ribonucleoprotein complex subunit 3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (250), Expect = 3e-30
 Identities = 39/57 (68%), Positives = 47/57 (82%)

Query: 39 YLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
          +LMY LG DGKR+YTLKKV  +G  T SAHPARFSPDDKYSR+R+T+ +RFGL+  Q
Sbjct: 1  HLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 57

>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 55

class: Small proteins
fold: Rubredoxin-like
superfamily: Nop10-like SnoRNP
family: Nucleolar RNA-binding protein Nop10-like
domain: Ribosome biogenesis protein Nop10
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 61.7 bits (150), Expect = 4e-15
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRF 89
           +YTLK++ P  G  TV   P +FS +D++ + R  + R  
Sbjct: 11 GLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRAL 51

>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 52

class: Small proteins
fold: Rubredoxin-like
superfamily: Nop10-like SnoRNP
family: Nucleolar RNA-binding protein Nop10-like
domain: Ribosome biogenesis protein Nop10
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 60.1 bits (146), Expect = 1e-14
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRF 89
            YTLK+V P  G  T  AHP RFSP+D Y   R    R  
Sbjct: 9  GRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREV 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d2aqaa1	57	H/aca ribonucleoprotein complex subunit 3 {Baker's	100.0
d2ey4e1	52	Ribosome biogenesis protein Nop10 {Archaeon Pyroco	99.88
d2apob1	55	Ribosome biogenesis protein Nop10 {Archaeon Methan	99.88

>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Nop10-like SnoRNP
family: Nucleolar RNA-binding protein Nop10-like
domain: H/aca ribonucleoprotein complex subunit 3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-38  Score=203.47  Aligned_cols=57  Identities=68%  Similarity=1.077  Sum_probs=56.3

Q ss_pred             EEEEEeCCCCceeeeecccCCCCCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCC
Q psy7862          39 YLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ   95 (101)
Q Consensus        39 ~L~yyl~e~gc~vYTLk~~CP~G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq   95 (101)
                      |||||||++|+++|||++.||+|++|.+|||||||||||||+|||+||||||+||||
T Consensus         1 ~L~y~l~~~g~rvYTLkk~~p~G~~T~sahPaRFSPdDkysr~Ri~lKkrfglL~tq   57 (57)
T d2aqaa1           1 HLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ   57 (57)
T ss_dssp             CCSSEECSSSCEECCCCCSSCCCCCCCSSCCCCCCSSSTTSHHHHSCCCSCCCCCCC
T ss_pred             CceEEECCCCCEEEEeeccCCCCCcccccCCCcCCcccccHHHHHHHHHHhccCcCC
Confidence            799999999999999999999999999999999999999999999999999999998

>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Nop10-like SnoRNP
family: Nucleolar RNA-binding protein Nop10-like
domain: Ribosome biogenesis protein Nop10
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.88  E-value=5.5e-24  Score=133.76  Aligned_cols=44  Identities=43%  Similarity=0.581  Sum_probs=41.6

Q ss_pred             CCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHh
Q psy7862          46 EDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRF   89 (101)
Q Consensus        46 e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~   89 (101)
                      ...|+.|||++.||. |+.|.+||||||||||||++|||+||||+
T Consensus         5 C~~C~~YTL~~~CP~CG~~t~~a~ParfSPeDky~~yRr~lKkr~   49 (52)
T d2ey4e1           5 CPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREV   49 (52)
T ss_dssp             CTTTCCEESSSBCTTTCCBCEESSCCCCCTTCTTHHHHHHHHHHH
T ss_pred             CCcccceeccccCcCCCCcccccCCCCCCCCcccHHHHHHHHHHh
Confidence            357999999999998 99999999999999999999999999985

>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Nop10-like SnoRNP
family: Nucleolar RNA-binding protein Nop10-like
domain: Ribosome biogenesis protein Nop10
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=7.4e-24  Score=134.32  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=45.3

Q ss_pred             eEEEEEeCCCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhC
Q psy7862          38 MYLMYYLGEDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFG   90 (101)
Q Consensus        38 M~L~yyl~e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~g   90 (101)
                      |-|+.   ...|+.|||++.||. |+.|.+|||||||||||||+|||+||+++.
T Consensus         2 ~klrk---C~~C~~YTL~~~CP~CG~~t~~a~P~rfSPeDky~~~Rr~lKk~~~   52 (55)
T d2apob1           2 MRMKK---CPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALK   52 (55)
T ss_dssp             CCCEE---CTTTCCEESSSBCSSSCSBCBCCCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred             cceee---CCcccceeccccCcCCCCccCccCCCCCCCCcchHHHHHHHHHHHh
Confidence            44555   678999999999998 999999999999999999999999999863