Psyllid ID: psy788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKNI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEcccccEEEEEEccccccccccccccccccHHHHHHHHHHHccEEEEccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHccEEEEccccccccccHHHHHHEEEEEEEccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mttapdkcyfytiseelrPKREILADALdkagmvpvipdggyfmvadwtqlrpmlrldtesdkyeDFKFAKWMTknvklqgippsafysdehKHLGENLIRYCFFKKDETLREASSILQTWRNKNI
Flexible Loop (DISEMBL)
mttapdkcyfytiseelrpkREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSilqtwrnkni
Low Complexity Region (SEG)
MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKNI
Disordered region (IsUnstruct)
******KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLR**************
Disordered Region (DISOPRED)
**TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR****
Disordered Region (DISEMBL)
MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKNI
Disordered Region (DISPRO)
**TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q58FK9	454	Kynurenine--oxoglutarate	yes	N/A	0.928	0.257	0.483	2e-25
Q6YP21	454	Kynurenine--oxoglutarate	yes	N/A	0.904	0.251	0.443	2e-23
Q71RI9	455	Kynurenine--oxoglutarate	yes	N/A	0.928	0.257	0.440	4e-23
Q0P5G4	455	Kynurenine--oxoglutarate	yes	N/A	0.944	0.261	0.420	3e-22
Q7T3E5	450	Kynurenine--oxoglutarate	no	N/A	0.912	0.255	0.435	1e-20
Q8BTY1	424	Kynurenine--oxoglutarate	no	N/A	0.920	0.273	0.350	5e-15
Q16773	422	Kynurenine--oxoglutarate	no	N/A	0.904	0.270	0.347	3e-14
Q54KM6	435	Kynurenine--oxoglutarate	yes	N/A	0.841	0.243	0.353	5e-14
Q08415	457	Kynurenine--oxoglutarate	no	N/A	0.904	0.249	0.339	1e-12
O14209	421	Uncharacterized aminotran	yes	N/A	0.896	0.268	0.333	3e-12

>sp|Q58FK9|KAT3_RAT Kynurenine--oxoglutarate transaminase 3 OS=Rattus norvegicus GN=Ccbl2 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF ++ +EL  KR+ +A  L+  G+ P+IPDGGYF++AD + L   L  D +SD+  D
Sbjct: 336 ECYFNSLPKELEVKRDRMACLLNSVGLKPIIPDGGYFIIADVSSLGVDLS-DVKSDEPYD 394

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +KF KWMTKN KL  IP SAF   E K   E L+R+CF KKD TL  A  I +TW ++
Sbjct: 395 YKFVKWMTKNKKLSAIPVSAFCDSESKPHFEKLVRFCFIKKDSTLDAAEEIFRTWNSR 452

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 3

>sp|Q6YP21|KAT3_HUMAN Kynurenine--oxoglutarate transaminase 3 OS=Homo sapiens GN=CCBL2 PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF ++ +EL  KR+ +   L+  G+ P++PDGGYF++AD + L P L  D ++++  D
Sbjct: 336 ECYFNSLPKELEVKRDRMVRLLESVGLKPIVPDGGYFIIADVSLLDPDLS-DMKNNEPYD 394

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
           +KF KWMTK+ KL  IP SAF + E K   E  +R+CF KKD TL  A  I++ W
Sbjct: 395 YKFVKWMTKHKKLSAIPVSAFCNSETKSQFEKFVRFCFIKKDSTLDAAEEIIKAW 449

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q71RI9|KAT3_MOUSE Kynurenine--oxoglutarate transaminase 3 OS=Mus musculus GN=Ccbl2 PE=1 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF ++ +EL  KR+ +   L+  G+ P++PDGGYF++AD + L   L  D  SD+  D
Sbjct: 337 ECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYD 395

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +KF KWMTK+ KL  IP SAF   + K   E L+R+CF KKD TL  A  I + W ++
Sbjct: 396 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAWNSQ 453

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q0P5G4|KAT3_BOVIN Kynurenine--oxoglutarate transaminase 3 OS=Bos taurus GN=CCBL2 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 73/119 (61%)

Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF ++ +EL  KR+ +   L+  G+  ++PDGGYF++AD + L   L    +S++  D
Sbjct: 336 ECYFNSLPKELEVKRDRMVHLLESVGLKSIVPDGGYFIIADVSLLDVDLLDMKDSNEPYD 395

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
           +KF KWM KN KL  IP SAF + E K   E  +R+CF KKD TL  A  I++ W  +N
Sbjct: 396 YKFVKWMIKNKKLSAIPVSAFCNAETKSQFEKFVRFCFIKKDSTLDAAEEIIKAWSRQN 454

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q7T3E5|KAT3_DANRE Kynurenine--oxoglutarate transaminase 3 OS=Danio rerio GN=ccbl2 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 5   PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKY 64
           PD CYF  ++ EL  KR+ +A  L + GM PV+P+GGYFM+ D T L   L    + + Y
Sbjct: 333 PD-CYFSALALELEGKRDRMAAMLAQTGMTPVVPEGGYFMIVDVTALNQDLTHMGDDEPY 391

Query: 65  EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
            D+KF KWM K  KL  IP +AF  ++     E  IR CF K++ TL  A +IL+ W
Sbjct: 392 -DYKFVKWMIKEKKLAAIPVTAFVGEDSVKQFEKYIRLCFIKQESTLDAAEAILKNW 447

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q8BTY1|KAT1_MOUSE Kynurenine--oxoglutarate transaminase 1 OS=Mus musculus GN=Ccbl1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDF 67
           YF  + + +   R+ +  +L   G+ P+IP G YF++AD +  +  M  L    D+  D 
Sbjct: 305 YFLQLPQAMGLNRDHMIQSLQSVGLKPLIPQGSYFLIADISDFKSSMPDLPGAMDEPYDT 364

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +FAKWM KN  L  IP S FYS  H    ++ IR+CF K   TL+     L +W+ +
Sbjct: 365 RFAKWMIKNKGLSAIPVSTFYSQPHHKDFDHYIRFCFVKDKATLQAMDKRLCSWKGE 421

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|Q16773|KAT1_HUMAN Kynurenine--oxoglutarate transaminase 1 OS=Homo sapiens GN=CCBL1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYEDF 67
           YF    + ++  R+ +  +L   G+ P+IP G YF++ D +   R M  L    D+  D 
Sbjct: 305 YFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +F KWM KN  L  IP S FYS  H+   ++ IR+CF K + TL+     L+ W+
Sbjct: 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|Q54KM6|KAT_DICDI Kynurenine--oxoglutarate transaminase OS=Dictyostelium discoideum GN=ccbl PE=3 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 10/116 (8%)

Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESD---- 62
           K YF  ++   + KR+ L ++L +AG+ PVIP G YF++ D + +   L+ D   D    
Sbjct: 313 KDYFKELATMYQNKRDTLLNSLTQAGLDPVIPQGTYFIMGDTSSIH--LQGDQGKDTSIT 370

Query: 63  ----KYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
                  D+  A+++T    +  IPPSAFY D+H+ + EN +R+ F K D TL++A
Sbjct: 371 GMGLHLRDWNIARYLTTEYGVTTIPPSAFYCDDHQKIPENFVRFTFCKDDLTLQKA 426

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|Q08415|KAT1_RAT Kynurenine--oxoglutarate transaminase 1, mitochondrial OS=Rattus norvegicus GN=Ccbl1 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDF 67
           YF  + + +   R+ +  +L   G+   I  G YF++AD +  +  M  L    D+  D 
Sbjct: 339 YFLQLPQAMELNRDHMIRSLQSVGLKLWISQGSYFLIADISDFKSKMPDLPGAEDEPYDR 398

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +FAKWM KN+ L GIP S F+S  H+   ++ IR+CF K   TL+     L+ W+
Sbjct: 399 RFAKWMIKNMGLVGIPVSTFFSRPHQKDFDHYIRFCFVKDKATLQAMDERLRKWK 453

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|O14209|YDT4_SCHPO Uncharacterized aminotransferase C6B12.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6B12.04c PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 7/120 (5%)

Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE-----SDK 63
           Y+       + + EILA A D+  +   IPDG Y+ +A++++L+  L  D       +++
Sbjct: 302 YYEEYKSSYKKRFEILAKAFDQLEIPYTIPDGSYYTMANFSKLK--LPKDYPFPEEIANR 359

Query: 64  YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123
             DFK   W+ K + +  IPP+ FY+DE   + EN +R+ F K  ETL EA+  LQ  ++
Sbjct: 360 PRDFKLCYWILKEIGVATIPPTEFYTDEDAPVAENYLRFAFCKTFETLEEAARRLQKLKD 419

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
307211221	419	Kynurenine--oxoglutarate transaminase 3	0.936	0.281	0.576	2e-38
383857126	460	PREDICTED: kynurenine--oxoglutarate tran	0.944	0.258	0.591	6e-38
332376807	463	unknown [Dendroctonus ponderosae]	0.936	0.254	0.567	2e-37
307178243	461	Kynurenine--oxoglutarate transaminase 3	0.952	0.260	0.586	4e-37
91091720	429	PREDICTED: similar to kynurenine aminotr	0.928	0.272	0.589	1e-36
350401520	449	PREDICTED: kynurenine--oxoglutarate tran	0.928	0.260	0.564	1e-36
289740913	468	kynurenine aminotransferase [Glossina mo	0.928	0.25	0.564	2e-36
380013738	449	PREDICTED: kynurenine--oxoglutarate tran	0.944	0.265	0.558	6e-36
312380678	420	hypothetical protein AND_07194 [Anophele	0.968	0.290	0.557	9e-36
328789138	141	PREDICTED: kynurenine--oxoglutarate tran	0.944	0.843	0.55	2e-35

>gi|307211221|gb|EFN87421.1| Kynurenine--oxoglutarate transaminase 3 [Harpegnathos saltator]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 95/118 (80%)

Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF+++++EL PKR+ +A  L + GMVP IP+GGYFM+A+WT L   ++L+ E+DKY+D
Sbjct: 302 ECYFHSLAQELLPKRDYMAKFLSEVGMVPTIPEGGYFMLANWTSLENKVKLNEETDKYKD 361

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           ++F KWMTKNV LQGIPPSAFY  +H+HLGE+ +RYCF KKDE L+ A+ IL+ W +K
Sbjct: 362 YRFTKWMTKNVGLQGIPPSAFYGPKHRHLGEDYVRYCFIKKDENLKAAADILKKWASK 419

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857126|ref|XP_003704057.1| PREDICTED: kynurenine--oxoglutarate transaminase 3-like [Megachile rotundata]

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 95/120 (79%), Gaps = 1/120 (0%)

Query: 5   PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKY 64
           PD CYF ++++EL PKR+ +A  L   GM P IP+GGYFMVA+WT L+  ++LD E+D+ 
Sbjct: 341 PD-CYFVSLAKELLPKRDYMAKFLSDVGMSPTIPEGGYFMVANWTALKDKVKLDEETDEN 399

Query: 65  EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +D++F KWMTKNV +QGIPPSAFYS EHKHLGE+ +RYCF KKDE L+EA+ IL  W+++
Sbjct: 400 KDYRFTKWMTKNVGVQGIPPSAFYSREHKHLGEDNVRYCFIKKDENLKEAAKILTKWKSQ 459

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376807|gb|AEE63543.1| unknown [Dendroctonus ponderosae]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 93/118 (78%)

Query: 6   DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYE 65
           D+CYF +I++EL PK++ +A  L + G  P++P+GGYFM+ADWT L   + L +ESD+Y+
Sbjct: 343 DECYFNSITKELEPKKKYMATFLQETGFKPIVPEGGYFMMADWTPLEANVDLSSESDQYK 402

Query: 66  DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123
           D++F KWMTKNV LQGIPP+AFY  EHK LGEN +RYCF K+D+ L EA++ILQ W++
Sbjct: 403 DYRFTKWMTKNVGLQGIPPTAFYGVEHKPLGENFVRYCFIKQDKNLEEAAAILQKWKS 460

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178243|gb|EFN67028.1| Kynurenine--oxoglutarate transaminase 3 [Camponotus floridanus]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 94/121 (77%), Gaps = 1/121 (0%)

Query: 5   PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKY 64
           PD CYF++++ EL PKR+ +A  L + GMVP IP+GGYFM+A+W+ L   ++L  E+D+ 
Sbjct: 340 PD-CYFHSLALELLPKRDYMAKFLQEIGMVPTIPEGGYFMLANWSPLENKVKLQEETDEN 398

Query: 65  EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +D+KF KWMTKNV LQGIPPSAFYS EHKHLGE+ +RYCF KKDE L+ A  IL+ W +K
Sbjct: 399 KDYKFTKWMTKNVGLQGIPPSAFYSPEHKHLGEDYVRYCFIKKDENLKAAGDILKKWVSK 458

Query: 125 N 125
           +
Sbjct: 459 S 459

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091720|ref|XP_966874.1| PREDICTED: similar to kynurenine aminotransferase [Tribolium castaneum]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 91/117 (77%)

Query: 6   DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYE 65
           D+CYF +IS EL  KR+  A  L + GM P IP+GGYFMVADW+ L   + L +ESDKY+
Sbjct: 309 DECYFKSISCELLAKRDFTAKFLCEVGMKPTIPEGGYFMVADWSPLESKVDLASESDKYK 368

Query: 66  DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           D++F KWMTKN+ LQGIPP+AFYS++HK+L EN +RYC+FKKDE L++A+ IL  W+
Sbjct: 369 DYRFTKWMTKNIGLQGIPPTAFYSEKHKNLAENFVRYCYFKKDENLQKAAEILHNWK 425

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401520|ref|XP_003486180.1| PREDICTED: kynurenine--oxoglutarate transaminase 3-like [Bombus impatiens]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 90/117 (76%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
           CYF ++++EL PKR  +A  L   GM+P IP GGYFMVA+W+ L+  +RL+ E+D+  D+
Sbjct: 332 CYFVSLAKELLPKRNYMAKFLSDVGMIPTIPQGGYFMVANWSALKDKVRLEEETDENRDY 391

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +F KWMTKNV +QGIPPS FYS EHKHLGE+ +RYCF KKDE L++A+ IL  W+++
Sbjct: 392 RFTKWMTKNVGIQGIPPSVFYSPEHKHLGEDNVRYCFIKKDENLKKAADILMKWKDQ 448

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740913|gb|ADD19204.1| kynurenine aminotransferase [Glossina morsitans morsitans]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 89/117 (76%)

Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF+++  ELR KR+ +A  L ++GM P IP+GGYFM+ADWT L   + +++E DKY D
Sbjct: 352 ECYFHSLPVELREKRDFMARFLKESGMKPTIPEGGYFMLADWTNLEKKIDMNSEPDKYRD 411

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123
           ++F KWMTKN+ LQGIPPSAFYS+ HK LGEN +RYCF KK E L +A+ +L  W+N
Sbjct: 412 YRFTKWMTKNMGLQGIPPSAFYSESHKKLGENFVRYCFIKKQENLEKAAQLLNKWKN 468

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013738|ref|XP_003690906.1| PREDICTED: kynurenine--oxoglutarate transaminase 3-like [Apis florea]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 95/120 (79%), Gaps = 1/120 (0%)

Query: 5   PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKY 64
           PD CYF+++++EL  KR+ +A  L   GM P IP+GGYFMVA+WT L+  + L+ E+D+ 
Sbjct: 330 PD-CYFFSLAKELISKRDYMAKFLSDVGMSPTIPEGGYFMVANWTALKDKVNLEEETDEN 388

Query: 65  EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +D++F KWMTKNV +QGIPPSAFYS+EHK+LGE+ +RYCF KKDE L++A+ IL  W+++
Sbjct: 389 KDYRFTKWMTKNVGIQGIPPSAFYSNEHKYLGEDNVRYCFIKKDENLKKAAEILMKWKSQ 448

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380678|gb|EFR26608.1| hypothetical protein AND_07194 [Anopheles darlingi]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 90/122 (73%)

Query: 4   APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDK 63
           A  +CYF +IS+EL  KR+ +A  L+  GM P +P GGYFMVADW++L   + L  E+D+
Sbjct: 298 ASPECYFNSISKELLSKRDFMARFLEGIGMHPTVPQGGYFMVADWSKLADRVDLTQETDR 357

Query: 64  YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123
           Y D++F KWMTK V LQGIPPSAFY D+HK LGE+ +RYCFFK+D+TL+ AS IL  W+ 
Sbjct: 358 YRDYRFTKWMTKTVGLQGIPPSAFYCDDHKPLGEDFVRYCFFKRDDTLQRASDILTQWKG 417

Query: 124 KN 125
           + 
Sbjct: 418 QT 419

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789138|ref|XP_003251234.1| PREDICTED: kynurenine--oxoglutarate transaminase 3-like [Apis mellifera]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 93/120 (77%), Gaps = 1/120 (0%)

Query: 5   PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKY 64
           PD CYF ++++EL  KR+ +A  L   GM P IP+GGYFM+A+WT L+  + L+ E+D++
Sbjct: 22  PD-CYFVSLAKELTSKRDYMAKFLSDVGMSPTIPEGGYFMIANWTALKDKVNLEEETDEH 80

Query: 65  EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
            D++F KWMTKNV +QGIPPSAFYS EHK+LGE+ +RYCF KKDE L++A+ IL  W+++
Sbjct: 81  RDYRFTKWMTKNVGVQGIPPSAFYSSEHKYLGEDNVRYCFIKKDENLKKAAEILMKWKSQ 140

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0037955	450	CG6950 [Drosophila melanogaste	0.904	0.253	0.543	2.5e-33
RGD|1359262	454	Kat3 "kynurenine aminotransfer	0.928	0.257	0.483	1.5e-25
UNIPROTKB|F1S4D5	430	CCBL2 "Uncharacterized protein	0.936	0.274	0.449	1.2e-23
UNIPROTKB|E1C934	419	CCBL2 "Uncharacterized protein	0.936	0.281	0.45	1.7e-23
UNIPROTKB|Q6YP21	454	CCBL2 "Kynurenine--oxoglutarat	0.904	0.251	0.443	1.7e-23
MGI|MGI:2677849	455	Ccbl2 "cysteine conjugate-beta	0.928	0.257	0.440	3.7e-23
WB|WBGene00010984	441	nkat-3 [Caenorhabditis elegans	0.904	0.258	0.470	6.8e-23
UNIPROTKB|Q0P5G4	455	CCBL2 "Kynurenine--oxoglutarat	0.936	0.259	0.416	3.8e-22
UNIPROTKB|E2RPG4	455	CCBL2 "Uncharacterized protein	0.912	0.252	0.434	3.8e-22
ZFIN|ZDB-GENE-040426-2676	446	ccbl1 "cysteine conjugate-beta	0.920	0.260	0.427	2.1e-21

FB|FBgn0037955 CG6950 [Drosophila melanogaster (taxid:7227)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 62/114 (54%), Positives = 85/114 (74%)

Query:     9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
             YF ++  EL+ KR+ +A  L ++GM P IP+GGYFM+ADW+ L   + L +E DK+ D+K
Sbjct:   337 YFLSLPRELKQKRDFMAKFLSESGMRPTIPEGGYFMLADWSPLAGKIDLSSEPDKHRDYK 396

Query:    69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
             F KWMTKN+ LQGIPPSAFYS+ +KHLGE+ +RYCF KK E L +A+ +L  W+
Sbjct:   397 FTKWMTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFIKKQENLDKAAELLSKWK 450

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

RGD|1359262 Kat3 "kynurenine aminotransferase III" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 57/118 (48%), Positives = 77/118 (65%)

Query:     7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
             +CYF ++ +EL  KR+ +A  L+  G+ P+IPDGGYF++AD + L   L  D +SD+  D
Sbjct:   336 ECYFNSLPKELEVKRDRMACLLNSVGLKPIIPDGGYFIIADVSSLGVDLS-DVKSDEPYD 394

Query:    67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
             +KF KWMTKN KL  IP SAF   E K   E L+R+CF KKD TL  A  I +TW ++
Sbjct:   395 YKFVKWMTKNKKLSAIPVSAFCDSESKPHFEKLVRFCFIKKDSTLDAAEEIFRTWNSR 452

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=ISS

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0070189 "kynurenine metabolic process" evidence=ISS

UNIPROTKB|F1S4D5 CCBL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 274 (101.5 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 53/118 (44%), Positives = 75/118 (63%)

Query:     7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
             +CYF ++ +EL  KR+ +   LD AG+ P++PDGGYF++AD + L   L    +S +  D
Sbjct:   311 ECYFNSLPKELEGKRDRMVRLLDSAGLRPIVPDGGYFIIADVSLLDADLSDMKDSSEPYD 370

Query:    67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
             +KF KWMTKN KL  IP SAF + E K   E  +R+CF KKD TL  A  I++ W ++
Sbjct:   371 YKFVKWMTKNKKLSAIPVSAFCNAEVKSQFEKFVRFCFIKKDTTLDAAEEIIKAWSSQ 428

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E1C934 CCBL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 54/120 (45%), Positives = 73/120 (60%)

Query:     5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKY 64
             PD CYFY++  EL  KR+ +A  L + G+ PVIP+GGYFM+ D + L   L  D + ++ 
Sbjct:   300 PD-CYFYSLPRELESKRDRMAQLLQEVGLTPVIPEGGYFMIVDVSTLNVDLP-DVDENQP 357

Query:    65 EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
              D+KF +WM  + KL  IP SAF   E K   E  IR+CF KKD TL  A  IL+ W+ +
Sbjct:   358 YDYKFVRWMISSKKLSAIPLSAFCGPETKRQFEKYIRFCFIKKDSTLDAAEVILKNWKKQ 417

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IEA

UNIPROTKB|Q6YP21 CCBL2 "Kynurenine--oxoglutarate transaminase 3" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 51/115 (44%), Positives = 75/115 (65%)

Query:     7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
             +CYF ++ +EL  KR+ +   L+  G+ P++PDGGYF++AD + L P L  D ++++  D
Sbjct:   336 ECYFNSLPKELEVKRDRMVRLLESVGLKPIVPDGGYFIIADVSLLDPDLS-DMKNNEPYD 394

Query:    67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
             +KF KWMTK+ KL  IP SAF + E K   E  +R+CF KKD TL  A  I++ W
Sbjct:   395 YKFVKWMTKHKKLSAIPVSAFCNSETKSQFEKFVRFCFIKKDSTLDAAEEIIKAW 449

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0070189 "kynurenine metabolic process" evidence=ISS

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=ISS

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0006569 "tryptophan catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:2677849 Ccbl2 "cysteine conjugate-beta lyase 2" [Mus musculus (taxid:10090)]

 Score = 271 (100.5 bits), Expect = 3.7e-23, P = 3.7e-23
 Identities = 52/118 (44%), Positives = 74/118 (62%)

Query:     7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
             +CYF ++ +EL  KR+ +   L+  G+ P++PDGGYF++AD + L   L  D  SD+  D
Sbjct:   337 ECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYD 395

Query:    67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
             +KF KWMTK+ KL  IP SAF   + K   E L+R+CF KKD TL  A  I + W ++
Sbjct:   396 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAWNSQ 453

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IDA

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0070189 "kynurenine metabolic process" evidence=IDA

WB|WBGene00010984 nkat-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 268 (99.4 bits), Expect = 6.8e-23, P = 6.8e-23
 Identities = 55/117 (47%), Positives = 76/117 (64%)

Query:     5 PDKCYFYT-ISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDK 63
             P+  Y  T +S ELR KR+ LA  L++    P+IPD GYFM+AD+  L+  + L TE D 
Sbjct:   321 PENSYLATGLSGELRAKRDKLAKMLEEGNFRPIIPDAGYFMLADYVHLKEGINLPTEEDP 380

Query:    64 YEDFKFAKWMTKNVKLQGIPPSAFYSD-EHKHLGENLIRYCFFKKDETLREASSILQ 119
              +DF F++W+ +  KL  IPPSAFYS  ++K    N++R C+FKKDETL  A  IL+
Sbjct:   381 -DDFVFSRWLCREKKLAVIPPSAFYSARDNKLKNSNMVRLCYFKKDETLDAAEEILK 436

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q0P5G4 CCBL2 "Kynurenine--oxoglutarate transaminase 3" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 50/120 (41%), Positives = 74/120 (61%)

Query:     7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLR-PMLRLDTESDKYE 65
             +CYF ++ +EL  KR+ +   L+  G+  ++PDGGYF++AD + L   +L +   ++ Y 
Sbjct:   336 ECYFNSLPKELEVKRDRMVHLLESVGLKSIVPDGGYFIIADVSLLDVDLLDMKDSNEPY- 394

Query:    66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
             D+KF KWM KN KL  IP SAF + E K   E  +R+CF KKD TL  A  I++ W  +N
Sbjct:   395 DYKFVKWMIKNKKLSAIPVSAFCNAETKSQFEKFVRFCFIKKDSTLDAAEEIIKAWSRQN 454

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=ISS

GO:0070189 "kynurenine metabolic process" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2RPG4 CCBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 50/115 (43%), Positives = 72/115 (62%)

Query:     7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
             +CYF ++ +EL  KR+ +    +  G+ P++PDGGYF++AD + L   L    +S++  D
Sbjct:   336 ECYFNSLPKELEVKRDRMIHLFESLGLKPIVPDGGYFIIADVSLLDADLSDMKDSNEPYD 395

Query:    67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
             +KF KWMTKN KL  IP SAF + E K   E  +R+CF KKD TL  A  I++ W
Sbjct:   396 YKFVKWMTKNKKLSAIPVSAFCNAETKLQFEKFVRFCFIKKDSTLDAAEEIIKAW 450

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-040426-2676 ccbl1 "cysteine conjugate-beta lyase; cytoplasmic (glutamine transaminase K, kyneurenine aminotransferase)" [Danio rerio (taxid:7955)]

 Score = 255 (94.8 bits), Expect = 2.1e-21, P = 2.1e-21
 Identities = 50/117 (42%), Positives = 71/117 (60%)

Query:     9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
             YF+ +   L  KR+ LAD L   G+ P++P GGYFM+AD + +   L   T  ++  D++
Sbjct:   330 YFHQLPITLHEKRKRLADCLKSVGLKPILPQGGYFMIADISNINVDLNDPTTKEEPYDYR 389

Query:    69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW-RNK 124
             F KW+ K   L  IP SAFYS EH+   +  IR+CF K+D TL+ A +IL+ W  NK
Sbjct:   390 FVKWLIKEKGLATIPVSAFYSPEHRDQFQKYIRFCFVKEDSTLQAAENILKQWSENK 446

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	1e-16
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	5e-16
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	2e-14
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	2e-12
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	1e-09
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	4e-08
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	9e-07
PRK12414	384	PRK12414, PRK12414, putative aminotransferase; Pro	1e-06
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	0.002

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 26/135 (19%)

Query: 2   TTAP------------DKCYFYTISEELRPKREILADALDKAGMVPVIPDGG-YFMVADW 48
           TT P               YF  +  +L   R+ LA  L + G  PV+P  G YF+  D 
Sbjct: 264 TTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIGF-PVLPSQGTYFLTVD- 321

Query: 49  TQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKD 108
             L P   L    D   D  F + + +   +  IP SAFY ++      +++R+CF K+D
Sbjct: 322 --LAP---LGLAED---DVAFCRRLVEEAGVAAIPVSAFYEEDPV---TSVVRFCFAKRD 370

Query: 109 ETLREASSILQTWRN 123
            TL EA   L   R 
Sbjct: 371 ATLDEAVERLAAARR 385

Length = 387

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 71.9 bits (177), Expect = 5e-16
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 19/110 (17%)

Query: 10  FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKF 69
           FY      + KR+    AL  +    +  +G YF + D++ +         SD  +D +F
Sbjct: 294 FY------QAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAI---------SD-LDDVEF 337

Query: 70  AKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
            +W+T+   +  IP S FY+D   H    L+R CF K++ETL  A+  L 
Sbjct: 338 CQWLTREHGVAAIPLSVFYADPFPH---RLVRLCFAKQEETLDAAAERLC 384

Length = 386

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED-F 67
           +   + + L+ KR+ LA  L +AG       G YF+ AD   L            Y+D  
Sbjct: 283 WVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLG-----------YDDGT 331

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +F + + + V +  IP S FY  +      +L+R+ F K+D+TL EA   L+  R
Sbjct: 332 EFCRALPERVGVAAIPMSVFY--DPADAWNHLVRFAFCKRDDTLDEAIRRLRALR 384

Length = 387

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 13/117 (11%)

Query: 4   APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDK 63
           AP+  Y+  +  +   K++IL + L + G       G YF++ D T              
Sbjct: 306 APES-YYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPF----------GF 354

Query: 64  YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120
             D  F +++ + V +  IPPS FY +     G+NL+R+ F K +ETLR A   ++T
Sbjct: 355 ENDIAFCEYLIEEVGVAAIPPSVFYLNPED--GKNLVRFAFCKDEETLRAAVERMKT 409

Length = 413

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 18/121 (14%)

Query: 6   DKCYFYTISEELRPKREILADALDKAGMVPVI--PDGGYFMVADWTQLRPMLRLDTESDK 63
                  + EE R +R++L +AL++ G + V+  P+G +++                 + 
Sbjct: 287 SDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKI------------PEL 334

Query: 64  YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123
            +  +FAK + +   +  +P S F        GE  +R      +ETL EA   L  +  
Sbjct: 335 LDSEEFAKKLLEEAGVAVVPGSGFGEPP----GEGYVRLSLATSEETLEEALRRLARFLA 390

Query: 124 K 124
           +
Sbjct: 391 E 391

Length = 393

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 19/107 (17%)

Query: 9   YFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
           +   + E  R +R+ L +AL + G +V V P GG+F+   W  L           + +D 
Sbjct: 256 HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFL---WLDLP----------EGDDE 302

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
           +F + +     +   P SAF        GE  +R  F   +E L EA
Sbjct: 303 EFLERLLLEAGVVVRPGSAFGE-----GGEGFVRLSFATPEEELEEA 344

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 27/123 (21%)

Query: 6   DKCYFYTISEELRPKREILADALDK-AGMVPVIPDGGYFMVADWTQLRPMLRL---DTES 61
            + YF  + EE + +R+IL + L+K  G+V   P G ++++A         +L   D E 
Sbjct: 283 PESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIA---------KLPVDDAE- 332

Query: 62  DKYEDFKFAKWMTKNVKLQG-----IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASS 116
                  FAKW+  +    G      P S FY+     LG+N IR  +   +E L+ A  
Sbjct: 333 ------DFAKWLLTDFNYNGETVMVAPASGFYATPG--LGKNEIRIAYVLNEEDLKRAME 384

Query: 117 ILQ 119
           IL+
Sbjct: 385 ILK 387

Length = 397

>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 20  KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79
           KR++LA  L  +    +  +G +FM+A +           ESD      F   + ++ ++
Sbjct: 296 KRDLLARELAGSRFELLPSEGSFFMLARFR------HFSDESDS----DFVLRLIRDARV 345

Query: 80  QGIPPSAFYSDEHKHLGEN--LIRYCFFKKDETLREASSIL 118
             IP SAFY+D     G +  LIR  F K D TL E +  L
Sbjct: 346 ATIPLSAFYTD-----GTDTGLIRLSFSKDDATLVEGARRL 381

Length = 384

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 15  EELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWM 73
             LR  R+ L DAL     V V  PDG  +            R+   +D       AK +
Sbjct: 289 ARLRRSRDHLVDALRALPGVEVAKPDGAMYA---------FFRIPGVTDS---LALAKRL 336

Query: 74  TKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
                L   P +AF        GE  +R+CF +    L EA   L+ +
Sbjct: 337 VDEAGLGLAPGTAFGPG-----GEGFLRWCFARDPARLDEAVERLRRF 379

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.83
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.79
PLN00175	413	aminotransferase family protein; Provisional	99.78
PRK08912	387	hypothetical protein; Provisional	99.75
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.74
PRK08636	403	aspartate aminotransferase; Provisional	99.74
PRK06855	433	aminotransferase; Validated	99.74
PRK07682	378	hypothetical protein; Validated	99.74
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.73
KOG0634|consensus	472		99.73
PRK09082	386	methionine aminotransferase; Validated	99.73
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.73
PRK09148	405	aminotransferase; Validated	99.72
PRK06348	384	aspartate aminotransferase; Provisional	99.71
PRK06107	402	aspartate aminotransferase; Provisional	99.71
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.71
PRK07324	373	transaminase; Validated	99.71
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.71
PRK06207	405	aspartate aminotransferase; Provisional	99.71
PRK07777	387	aminotransferase; Validated	99.7
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.7
PLN02231	534	alanine transaminase	99.7
PRK08175	395	aminotransferase; Validated	99.7
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.7
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.7
PRK07681	399	aspartate aminotransferase; Provisional	99.7
PTZ00377	481	alanine aminotransferase; Provisional	99.69
PRK05957	389	aspartate aminotransferase; Provisional	99.69
PLN02656	409	tyrosine transaminase	99.69
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.69
PRK06108	382	aspartate aminotransferase; Provisional	99.69
PRK08068	389	transaminase; Reviewed	99.68
PRK08361	391	aspartate aminotransferase; Provisional	99.68
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.68
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.68
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.68
PRK07568	397	aspartate aminotransferase; Provisional	99.68
PRK07337	388	aminotransferase; Validated	99.67
PRK07683	387	aminotransferase A; Validated	99.67
PRK08960	387	hypothetical protein; Provisional	99.67
PRK05942	394	aspartate aminotransferase; Provisional	99.67
PTZ00433	412	tyrosine aminotransferase; Provisional	99.67
KOG0257|consensus	420		99.67
PRK08363	398	alanine aminotransferase; Validated	99.67
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.67
PRK12414	384	putative aminotransferase; Provisional	99.66
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.66
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.66
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.65
PRK09275	527	aspartate aminotransferase; Provisional	99.65
PLN02187	462	rooty/superroot1	99.64
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.63
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.62
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.62
PLN02672	1082	methionine S-methyltransferase	99.61
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.6
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.6
KOG0256|consensus	471		99.6
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.59
KOG0259|consensus	447		99.58
PRK09265	404	aminotransferase AlaT; Validated	99.58
PRK05839	374	hypothetical protein; Provisional	99.58
PRK07550	386	hypothetical protein; Provisional	99.58
PRK05764	393	aspartate aminotransferase; Provisional	99.58
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.57
PRK06836	394	aspartate aminotransferase; Provisional	99.52
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.47
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.43
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.42
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.41
PRK07908	349	hypothetical protein; Provisional	99.4
PRK08637	388	hypothetical protein; Provisional	99.4
PRK06290	410	aspartate aminotransferase; Provisional	99.38
PRK06225	380	aspartate aminotransferase; Provisional	99.38
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.34
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.33
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.32
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.3
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.3
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.29
PLN02397	423	aspartate transaminase	99.28
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.26
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.23
PTZ00376	404	aspartate aminotransferase; Provisional	99.21
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.2
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.18
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.16
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.15
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.15
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.14
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.13
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.09
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.08
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.06
KOG0258|consensus	475		99.06
PRK09105	370	putative aminotransferase; Provisional	99.03
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	98.96
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	98.95
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	98.85
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	98.85
PLN02822	481	serine palmitoyltransferase	98.84
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	98.84
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	98.83
cd00609	350	AAT_like Aspartate aminotransferase family. This f	98.82
PLN02483	489	serine palmitoyltransferase	98.81
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	98.79
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	98.76
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	98.75
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	98.73
PRK01533	366	histidinol-phosphate aminotransferase; Validated	98.7
PRK08354	311	putative aminotransferase; Provisional	98.67
PRK03321	352	putative aminotransferase; Provisional	98.66
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	98.59
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	98.57
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	98.54
PRK13392	410	5-aminolevulinate synthase; Provisional	98.52
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	98.52
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	98.5
PRK10534	333	L-threonine aldolase; Provisional	98.42
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	98.41
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	98.35
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	98.33
PRK08088	425	4-aminobutyrate aminotransferase; Validated	98.32
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	98.31
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	98.27
PLN02721	353	threonine aldolase	98.22
PRK09064	407	5-aminolevulinate synthase; Validated	98.22
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	98.22
PRK04260	375	acetylornithine aminotransferase; Provisional	98.19
PRK02627	396	acetylornithine aminotransferase; Provisional	98.18
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	98.15
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	98.13
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	98.12
PRK00451	447	glycine dehydrogenase subunit 1; Validated	98.11
PRK10874	401	cysteine sulfinate desulfinase; Provisional	98.11
PRK01278	389	argD acetylornithine transaminase protein; Provisi	98.1
PRK02936	377	argD acetylornithine aminotransferase; Provisional	98.06
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	98.04
PLN02368	407	alanine transaminase	98.02
PRK13393	406	5-aminolevulinate synthase; Provisional	98.02
PLN00144	382	acetylornithine transaminase	97.99
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	97.91
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	97.87
PRK07179	407	hypothetical protein; Provisional	97.85
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	97.81
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	97.76
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	97.71
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	97.71
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	97.68
PTZ00125	400	ornithine aminotransferase-like protein; Provision	97.68
PRK09792	421	4-aminobutyrate transaminase; Provisional	97.67
PRK03244	398	argD acetylornithine aminotransferase; Provisional	97.64
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	97.64
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	97.62
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	97.62
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	97.53
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	97.47
PRK13520	371	L-tyrosine decarboxylase; Provisional	97.46
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	97.46
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	97.45
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	97.36
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	97.36
PRK02948	381	cysteine desulfurase; Provisional	97.31
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	97.3
PRK07505	402	hypothetical protein; Provisional	97.25
PLN02409	401	serine--glyoxylate aminotransaminase	97.21
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	97.19
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	97.19
PRK08247	366	cystathionine gamma-synthase; Reviewed	97.15
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	97.11
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	97.1
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	97.0
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	96.99
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	96.81
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	96.75
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	96.57
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	96.57
PLN02624	474	ornithine-delta-aminotransferase	96.46
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	96.29
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	96.24
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	96.19
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	96.18
PRK13580	493	serine hydroxymethyltransferase; Provisional	96.04
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	96.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	95.98
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	95.78
PTZ00094	452	serine hydroxymethyltransferase; Provisional	95.75
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	95.63
KOG0633|consensus	375		95.54
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	95.43
PRK13034	416	serine hydroxymethyltransferase; Reviewed	95.15
PRK03080	378	phosphoserine aminotransferase; Provisional	95.14
PRK14012	404	cysteine desulfurase; Provisional	95.11
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	95.03
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	95.02
PRK08297	443	L-lysine aminotransferase; Provisional	95.01
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	95.0
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	94.95
PLN02452	365	phosphoserine transaminase	94.3
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	94.25
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	94.17
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	94.04
PLN02955	476	8-amino-7-oxononanoate synthase	93.94
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	93.06
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	92.93
TIGR01814	406	kynureninase kynureninase. This model describes ky	92.71
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	92.63
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	92.38
PLN03226	475	serine hydroxymethyltransferase; Provisional	92.13
PRK13237	460	tyrosine phenol-lyase; Provisional	92.08
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	90.69
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	90.32
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	89.32
PRK07678	451	aminotransferase; Validated	88.76
PRK04366	481	glycine dehydrogenase subunit 2; Validated	88.27
PRK06541	460	hypothetical protein; Provisional	88.18
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	87.96
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	87.58
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	87.43
KOG1359|consensus	417		86.67
KOG1360|consensus	570		85.83
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	85.76
PRK04612	408	argD acetylornithine transaminase protein; Provisi	85.63
PRK07269	364	cystathionine gamma-synthase; Reviewed	85.47
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	84.33
PLN02724	805	Molybdenum cofactor sulfurase	84.27
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	84.17
PLN02242	418	methionine gamma-lyase	83.92
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	83.59
PLN02880	490	tyrosine decarboxylase	82.88
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	82.87
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	82.82
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	80.9
PLN02271	586	serine hydroxymethyltransferase	80.4

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.4e-19  Score=135.45  Aligned_cols=107  Identities=26%  Similarity=0.441  Sum_probs=94.3

Q ss_pred             CCCCc--hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC
Q psy788            2 TTAPD--KCYFYTISEELRPKREILADALDKA-GMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV   77 (126)
Q Consensus         2 ~~~~~--~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   77 (126)
                      +|++.  +.+++.+++.|++||+.+.+.|.+. |+++.. |+|+||+|++++..   .         ++.+|+.+|+++.
T Consensus       281 aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~---~---------d~~~f~~~Ll~~~  348 (393)
T COG0436         281 ALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL---L---------DSEEFAKKLLEEA  348 (393)
T ss_pred             HhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC---C---------CHHHHHHHHHHhC
Confidence            45666  3599999999999999999999988 699877 99999999999974   1         5889999999999


Q ss_pred             CeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           78 KLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        78 gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+|+||+.|+..    .+.+|+|++|+.+.+.+++++++|.++++.
T Consensus       349 gV~v~PG~~Fg~~----~g~~~vRis~~~~~~~l~~a~~rl~~~~~~  391 (393)
T COG0436         349 GVAVVPGSGFGEP----PGEGYVRLSLATSEETLEEALRRLARFLAE  391 (393)
T ss_pred             CEEEecccccCCC----CCCCeEEEEEecCHHHHHHHHHHHHHHHHh
Confidence            9999999999974    268999999999779999999999988763

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.79  E-value=1.3e-18  Score=126.85  Aligned_cols=107  Identities=26%  Similarity=0.377  Sum_probs=98.3

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788            2 TTAPDKCYFYTISEELRPKREILADALDKA--GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus         2 ~~~~~~~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV   79 (126)
                      |+++++.|++.++..++.|++++.+.|.++  ++++..|+|.|.+|++++..+  +         ++.++.++++.+++|
T Consensus       278 AY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~--l---------~d~~l~~~ll~~akV  346 (388)
T COG1168         278 AYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELG--L---------DDSELAEFLLEEAKV  346 (388)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccC--C---------ChHHHHHHHHHhhcE
Confidence            467889999999999999999999999987  799999999999999999865  2         467899999999999


Q ss_pred             eEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           80 QGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .+.+|+.||..     +.+++|+|++++...+++|++||..++++
T Consensus       347 al~~G~~FG~~-----g~gf~RlN~acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         347 ALSPGSTFGEE-----GSGFVRLNFACPRAILEEALERLKRALKK  386 (388)
T ss_pred             eccCCCccCcC-----CCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence            99999999975     68999999999999999999999988875

>PLN00175 aminotransferase family protein; Provisional

Probab=99.78  E-value=4e-18  Score=128.27  Aligned_cols=110  Identities=29%  Similarity=0.595  Sum_probs=92.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      |..++.|++++++.|++|++.+.+.|+++|+++..|+||||+|++++..+  .+        ++.+|+..|++++||.+.
T Consensus       304 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~~--~~--------~~~~~~~~ll~~~gV~v~  373 (413)
T PLN00175        304 LRAPESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFG--FE--------NDIAFCEYLIEEVGVAAI  373 (413)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEeccccC--CC--------CHHHHHHHHHHhCCEEEe
Confidence            44557899999999999999999999988888999999999999985321  11        367899998878899999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+....  .+.+++||+|+.+++.+++++++|.+++++
T Consensus       374 pg~~F~~~~~--~~~~~iRls~~~~~e~l~~~~~rL~~~~~~  413 (413)
T PLN00175        374 PPSVFYLNPE--DGKNLVRFAFCKDEETLRAAVERMKTKLKR  413 (413)
T ss_pred             CchHhCCCCC--CCCCEEEEEEcCCHHHHHHHHHHHHHHHhC
Confidence            9999975320  246899999999999999999999998764

>PRK08912 hypothetical protein; Provisional

Probab=99.75  E-value=2.9e-17  Score=122.36  Aligned_cols=109  Identities=29%  Similarity=0.530  Sum_probs=91.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ...++|++++++.|+++++.+.+.|+++|+++.+|+||||+|++++......         ++.+++..++.+.||.+.|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~~~---------~~~~~~~~l~~~~gV~v~p  348 (387)
T PRK08912        278 GKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLAE---------DDVAFCRRLVEEAGVAAIP  348 (387)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccCCCC---------CHHHHHHHHHhcCCEEEec
Confidence            3456899999999999999999999988888889999999999997521101         4678888887788999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+...   .+.+|+|++|+.+++.+++|+++|.+++++
T Consensus       349 g~~f~~~~---~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        349 VSAFYEED---PVTSVVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             chhhCCCC---CCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            99997532   246899999999889999999999998875

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.74  E-value=3e-17  Score=122.33  Aligned_cols=104  Identities=16%  Similarity=0.315  Sum_probs=87.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.+.|++++++.|+++|+.+.+.|+++|+.+..|+||+|+|++++...   .       .++.+++..++.++||.+.|
T Consensus       285 ~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~---~-------~~~~~~~~~l~~~~gv~v~p  354 (388)
T PRK07366        285 TGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPW---Q-------GNSVEFCTQLVAQTGVAASP  354 (388)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCccc---C-------CCHHHHHHHHHHhCCEEEeC
Confidence            3456899999999999999999999988888888999999999998531   0       03567888877789999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+.|+..     +++|+||+|+.+.+.+++|+++|.+++
T Consensus       355 g~~f~~~-----~~~~iRi~~~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        355 GSGFGKS-----GEGYVRFALVHDPDILEEAVERIAAFL  388 (388)
T ss_pred             chHhCcC-----CCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence            9999743     468999999988999999999998753

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.74  E-value=4.3e-17  Score=122.17  Aligned_cols=107  Identities=20%  Similarity=0.356  Sum_probs=90.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++.+.|++++++.|+++++.+.+.|.+.++++..|+||||+|++++......         ++.+++..++.+.||.+.|
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~~---------~~~~l~~~ll~~~gV~v~p  364 (403)
T PRK08636        294 DGDQSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHL---------GSLEFSKQLLTEAKVAVSP  364 (403)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCcceEEEEECCCccCCC---------CHHHHHHHHHHhCCEEEec
Confidence            3456899999999999999999999988888889999999999998531001         3568888877789999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+..     +.+++||+|+.+.+.+++++++|.+++++
T Consensus       365 g~~f~~~-----~~~~iRi~~~~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        365 GIGFGEY-----GDEYVRIALIENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             chhhCcC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            9999753     46899999998899999999999988763

>PRK06855 aminotransferase; Validated

Probab=99.74  E-value=4.2e-17  Score=123.41  Aligned_cols=112  Identities=14%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCccc------ccccCCCC--------C-chhhHHHH
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRP------MLRLDTES--------D-KYEDFKFA   70 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~------~~~~~~~~--------~-~~~~~~~~   70 (126)
                      ++|++++++.|++|++.+.+.|+++ ++.+..|+||||+|++++....      .++..+..        + ..++.+|+
T Consensus       301 ~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
T PRK06855        301 KNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFV  380 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHH
Confidence            6799999999999999999999887 7888999999999999985310      00000000        0 01256788


Q ss_pred             HHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           71 KWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        71 ~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      ..++.++||.+.||+.|+..      .+++||||+. +.++|++|+++|.++++.
T Consensus       381 ~~l~~~~gV~v~PG~~F~~~------~~~~Rls~~~~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        381 YYLLASTGICVVPLSSFCTE------LNGFRVTLLERDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             HHHHHHcCEEEecCCcCCCC------CCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence            78888999999999999742      3469999997 899999999999998764

>PRK07682 hypothetical protein; Validated

Probab=99.74  E-value=4.5e-17  Score=120.94  Aligned_cols=106  Identities=19%  Similarity=0.356  Sum_probs=90.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      |+..+.|++++++.|+++++.+.+.|+++|+++..|+||||+|++++...  .         ++.++++.++.++||.+.
T Consensus       271 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~g~~~~~~~~~~~~--~---------~~~~~~~~ll~~~gv~v~  339 (378)
T PRK07682        271 LRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTG--L---------SSEEFAEQLLLEEKVAVV  339 (378)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCeeEEEEEeccCCC--C---------CHHHHHHHHHHhCCEEEc
Confidence            34455789999999999999999999988888999999999999986321  1         367888887778899999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+..     +++++|++|+.+.+.+++++++|.+++++
T Consensus       340 pg~~f~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        340 PGSVFGES-----GEGFIRCSYATSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             CchhhCcC-----CCCeEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            99999642     46899999999889999999999998764

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.73  E-value=6e-17  Score=124.43  Aligned_cols=108  Identities=22%  Similarity=0.362  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.|+++++.+.+.|++.|+++..|+||||+|++++...   +  +.....++.++++.++.+.||.|.||+.
T Consensus       330 ~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~---~--~~~~~~~e~~l~~~ll~~~gV~v~pGs~  404 (496)
T PLN02376        330 DNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLL---R--DRNSFESEIELWHIIIDKVKLNVSPGSS  404 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhh---c--cCCchhHHHHHHHHHHHcCCEEEeCccc
Confidence            4577888999999999999999988899999999999999997531   1  0000112467888888778999999999


Q ss_pred             cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      |+..     .++|||+||+. +++.+++|++||.+++.+
T Consensus       405 F~~~-----~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~  438 (496)
T PLN02376        405 FRCT-----EPGWFRICFANMDDDTLHVALGRIQDFVSK  438 (496)
T ss_pred             cCCC-----CCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence            9754     46899999996 889999999999998853

>KOG0634|consensus

Probab=99.73  E-value=7.6e-17  Score=119.19  Aligned_cols=115  Identities=14%  Similarity=0.114  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC---C-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA---G-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~---g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .+|+.++|..|..||+++..++.++   + +++++|.||||+|++++..-  .+.  ....+...++....+.+.||.++
T Consensus       348 ~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~--~~~--~~~i~q~~e~i~~~~vk~gV~~v  423 (472)
T KOG0634|consen  348 LRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYIN--FDT--KKSINQIEEIIFIKAVKNGVKLV  423 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccc--ccc--ccchHHHHHHHHHHHHHCCeEEe
Confidence            4799999999999999999999986   4 77899999999999998321  110  01111245666667789999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhcC
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNKN  125 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~~  125 (126)
                      +|+.|..+++.....-|||++|+. +.|++++|++|+...++.+
T Consensus       424 ~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~  467 (472)
T KOG0634|consen  424 CGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH  467 (472)
T ss_pred             cCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence            999999863211123599999997 9999999999999998853

>PRK09082 methionine aminotransferase; Validated

Probab=99.73  E-value=7.6e-17  Score=120.19  Aligned_cols=102  Identities=28%  Similarity=0.560  Sum_probs=87.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|++++++.|+++++++.+.|++.++.+.+|+||||+|+++++.. ..         ++.+|+.+|+++.||.+.||+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~-~~---------~~~~~~~~l~~~~~v~v~pg~  353 (386)
T PRK09082        284 EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAIS-DL---------DDVEFCQWLTREHGVAAIPLS  353 (386)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEEEEeccccC-CC---------CHHHHHHHHHHhCCEEEeCcH
Confidence            56899999999999999999999988889999999999999998521 01         467898988789999999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      .|+..+   .+.+++|++|+.+++.+++++++|.+
T Consensus       354 ~f~~~~---~~~~~~Ri~~~~~~~~l~~~~~rl~~  385 (386)
T PRK09082        354 VFYADP---FPHRLVRLCFAKQEETLDAAAERLCQ  385 (386)
T ss_pred             HhCCCC---CCCCEEEEEecCCHHHHHHHHHHHhh
Confidence            997432   24689999999989999999999975

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.73  E-value=8.8e-17  Score=122.17  Aligned_cols=106  Identities=22%  Similarity=0.340  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|+...|++|+++++.+.+.|++.|+++..|+||||+|++++...   ..+   ....+.+++..++++.||.|.||+.
T Consensus       330 ~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~---~~~---~~~~e~~l~~~ll~~~gV~v~pG~~  403 (447)
T PLN02607        330 ENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLL---ETP---TREGELALWDSILREVKLNISPGSS  403 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhh---cCC---CchhHHHHHHHHHHhCCEEEcCccc
Confidence            4688999999999999999999988999999999999999997531   100   0012457887887778999999999


Q ss_pred             cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |+..     .++|||++|+. +++.+++|++||.++++
T Consensus       404 f~~~-----~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~  436 (447)
T PLN02607        404 CHCS-----EPGWFRVCFANMSEDTLEVALKRIHRFMD  436 (447)
T ss_pred             cCCC-----CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence            9764     47999999997 89999999999998876

>PRK09148 aminotransferase; Validated

Probab=99.72  E-value=1.4e-16  Score=119.63  Aligned_cols=107  Identities=16%  Similarity=0.312  Sum_probs=89.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.+.+.|++++++.|+++|+.+.+.|+++++.+..|+||+|+|++++......         ++.+++..++.+.||.|.
T Consensus       283 L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~~---------~~~~~~~~ll~~~gV~v~  353 (405)
T PRK09148        283 LNGPQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHL---------GSLEFSKLLVEKADVAVA  353 (405)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEEEEEECCCccCCC---------CHHHHHHHHHHhCCEEEe
Confidence            34457899999999999999999999988888888999999999998531000         256888887778999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ||+.|+..     +.+|+||+|+.+.+.+.+|+++|.++++
T Consensus       354 pg~~f~~~-----~~~~~Ri~~~~~~~~l~~al~~l~~~l~  389 (405)
T PRK09148        354 PGVGFGEH-----GDGYVRIALVENEQRIRQAARNIKRFLS  389 (405)
T ss_pred             CchhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            99999643     4689999999888999999999998876

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.71  E-value=1.3e-16  Score=118.80  Aligned_cols=103  Identities=20%  Similarity=0.254  Sum_probs=87.6

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +...+.|++++++.|++|++.+.+.|++. ++++..|+||||+|++++...  +         ++.+++..++.+.||.|
T Consensus       279 l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~~--~---------~~~~l~~~l~~~~gv~v  347 (384)
T PRK06348        279 LKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKTG--L---------SSVEFCEKLLKEAHVLV  347 (384)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccCC--C---------CHHHHHHHHHHhCCEEE
Confidence            34557899999999999999999999887 678889999999999997422  1         46788888777789999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      .||+.|+..     +.+++|++|+.+++++++|+++|.+.
T Consensus       348 ~pg~~f~~~-----~~~~iRi~~~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        348 IPGKAFGES-----GEGYIRLACTVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             cCchhhccC-----CCCeEEEEecCCHHHHHHHHHHHHhh
Confidence            999999753     46899999998889999999999764

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.71  E-value=1.7e-16  Score=118.87  Aligned_cols=115  Identities=14%  Similarity=0.186  Sum_probs=90.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      ++.++.|++++++.|+++++.+.+.|+++ |+++..|+||||+|++++.... ...+......++.+++..++++.||.+
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gv~v  364 (402)
T PRK06107        286 LNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIG-KTTPEGKVLETDQDVVLYLLDSAGVAV  364 (402)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeecccccc-cccccccCCCCHHHHHHHHHHhCCEEE
Confidence            34456899999999999999999999887 7889999999999999853200 000000000135678888888899999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN  125 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~  125 (126)
                      .||+.|+.       .+|+|++|+.+.+.+++++++|.+.+++-
T Consensus       365 ~pg~~Fg~-------~~~iRis~~~~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        365 VQGTAYGL-------SPYFRLSIATSLETLEEACARIERAVAAL  401 (402)
T ss_pred             eCccccCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence            99999963       47999999999999999999999988764

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.71  E-value=2.1e-16  Score=120.43  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=89.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            5 PDKCYFYTISEELRPKREILADALDKA---GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +.+.|++++|+.|++||+.+.++|+++   .++++.|.||||+|++++..   +         ++.++...+ .++||.+
T Consensus       347 ~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~---~---------~~~~l~~~a-~~~gv~i  413 (459)
T COG1167         347 HYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEG---I---------DARELLAAA-LEKGVVV  413 (459)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCC---C---------CHHHHHHHH-HHCCCEE
Confidence            467899999999999999999999997   37889999999999999974   2         467788875 4889999


Q ss_pred             eC-CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           82 IP-PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        82 ~p-g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      .| |..|..+.   ...+++|+||+. +++++++++++|.+.++.
T Consensus       414 ~~~g~~f~~~~---~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~  455 (459)
T COG1167         414 TPLGSAFSADG---DPRNGLRLSFSSPSEEEIEEGIKRLAALLRE  455 (459)
T ss_pred             EcCCccccCCC---CCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            99 88888653   246799999998 889999999999988764

>PRK07324 transaminase; Validated

Probab=99.71  E-value=2.3e-16  Score=117.31  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=90.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +.+.+.+++++++.|+++++.+.+.|+++ ++.+..|+||+|+|+.++..   .         ++.+|+.+|+.++||.|
T Consensus       267 l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~---~---------~~~~~~~~ll~~~gv~v  334 (373)
T PRK07324        267 LEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD---M---------PSEDFCLKLLKETGVLL  334 (373)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCC---C---------CHHHHHHHHHHhcCEEE
Confidence            45567899999999999999999999887 68888999999999999753   1         47789999888899999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .||+.|+.       ++|+||+|+.+.+.+++|+++|.+++++
T Consensus       335 ~pg~~F~~-------~~~iRis~~~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        335 VPGNRFDL-------EGHVRIGYCCDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             ECccccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            99999963       4699999999899999999999998864

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.71  E-value=3.1e-16  Score=119.81  Aligned_cols=105  Identities=23%  Similarity=0.323  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .|++.+++.|+++|+.+.+.|+++|+++.+|+||||+|++++...   +.   .......+++..++.++||.|.||+.|
T Consensus       324 ~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~---~~---~~~~~~~~l~~~ll~~~gV~v~PG~~f  397 (468)
T PLN02450        324 NYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLL---KS---NTFEAEMELWKKIVYEVKLNISPGSSC  397 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhc---Cc---CCchHHHHHHHHHHHhCCEEEeCcccc
Confidence            488999999999999999999988999999999999999997531   10   001124567888887899999999999


Q ss_pred             ccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      +..     .++|+|++|+. +++.+++|+++|.++++
T Consensus       398 ~~~-----~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~  429 (468)
T PLN02450        398 HCT-----EPGWFRVCFANMSEETLDLAMKRLKSFVE  429 (468)
T ss_pred             CCC-----CCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence            753     47899999996 88999999999998876

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.71  E-value=1.9e-16  Score=118.89  Aligned_cols=105  Identities=14%  Similarity=0.209  Sum_probs=88.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            4 APDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..++.|+++.++.++++|+.+.+.|+++ ++++..|+||+|+|++++...  .         ++.+|+..|+.++||.|.
T Consensus       297 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~--~---------~~~~~~~~l~~~~gV~v~  365 (405)
T PRK06207        297 SEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLA--V---------SLHDFVKILRLQAGVIVT  365 (405)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccC--C---------CHHHHHHHHHHhcCEEEe
Confidence            3345688888999999999999999887 788889999999999998521  1         366788887767899999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+..     .++++||+|+.+.+.+++|+++|.+++++
T Consensus       366 pG~~F~~~-----~~~~~Ris~~~~~~~l~~al~rl~~~l~~  402 (405)
T PRK06207        366 PGTEFSPH-----TADSIRLNFSQDHAAAVAAAERIAQLIER  402 (405)
T ss_pred             CchHhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            99999753     46899999999889999999999998764

>PRK07777 aminotransferase; Validated

Probab=99.70  E-value=2.4e-16  Score=117.43  Aligned_cols=109  Identities=29%  Similarity=0.500  Sum_probs=90.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ...+.|++++++.|+++++.+.+.|++.++++.+|+||||+|++++...  ..        ++.+|++.|+++.||.|.|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~--~~--------~~~~~~~~l~~~~gv~v~p  347 (387)
T PRK07777        278 DHEDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLG--YD--------DGTEFCRALPERVGVAAIP  347 (387)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEecccccC--CC--------CHHHHHHHHHHhCCEEEeC
Confidence            3456899999999999999999999988888889999999999986421  01        3678999987788999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+...  ..+++++||+|+.+++.+++|+++|.++..+
T Consensus       348 g~~f~~~~--~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~~  386 (387)
T PRK07777        348 MSVFYDPA--DAWNHLVRFAFCKRDDTLDEAIRRLRALRGR  386 (387)
T ss_pred             chHhCCCC--cCCCCeEEEEecCCHHHHHHHHHHHHHHhcC
Confidence            99997532  1246899999999899999999999887643

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.70  E-value=2e-16  Score=119.71  Aligned_cols=105  Identities=17%  Similarity=0.257  Sum_probs=87.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.|++++++.|+++|+.+.+.|+++ ++.+ ..|+||||+|++++...  ++     +..++.+|+..|+.++||.+.|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~--~~-----~~~~~~~~~~~ll~~~gV~v~p  390 (430)
T PLN00145        318 KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSC--LS-----GIKDDMDFCCKLAKEESVVVLP  390 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhh--cC-----CCCCHHHHHHHHHHhCCEEEeC
Confidence            46899999999999999999999887 7775 58999999999997421  00     0013667888888899999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+.       ++|+||+|+.+.+.+++|+++|.+++.+
T Consensus       391 G~~fg~-------~~~lRis~~~~~~~l~~al~rl~~~~~~  424 (430)
T PLN00145        391 GSALGM-------KNWLRITFAIDPPSLEDGLERLKSFCLR  424 (430)
T ss_pred             ccccCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            999963       5899999999899999999999998874

>PLN02231 alanine transaminase

Probab=99.70  E-value=2e-16  Score=122.40  Aligned_cols=112  Identities=15%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      |.+.+++.|++|++++.+.|+++ |+++..|+||||+|++++.....++........++..++..|+.+.||.++||+.|
T Consensus       415 ~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~F  494 (534)
T PLN02231        415 EKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGF  494 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCccc
Confidence            45578999999999999999988 89999999999999766421000000000000124557788888899999999999


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +..    .+..+||++|+.+++.+++|++||.+++++
T Consensus       495 g~~----~g~~~~Rit~~~~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        495 GQV----PGTWHFRCTILPQEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             CCC----CCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            863    256789999998999999999999988763

>PRK08175 aminotransferase; Validated

Probab=99.70  E-value=3.7e-16  Score=116.80  Aligned_cols=108  Identities=19%  Similarity=0.340  Sum_probs=90.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.+.+.|++.++..|+++++++.+.|+++++.+..|+||+|+|++++......         ++.+++..+++++||.|.
T Consensus       282 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~~---------~~~~~~~~l~~~~gv~v~  352 (395)
T PRK08175        282 LEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAM---------GSLEFAKKLLNEAKVCVS  352 (395)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEEEECCcccCCC---------CHHHHHHHHHHhCCEEEe
Confidence            44567899999999999999999999988888888999999999998631000         367888887778999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+..     +++++||+|+.+.+.+++|+++|.+++++
T Consensus       353 p~~~f~~~-----~~~~lRis~~~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        353 PGIGFGDY-----GDTHVRFALIENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             CchhhCcC-----CCCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            99999743     46799999998889999999999988764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.70  E-value=3.4e-16  Score=117.50  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=86.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|++++++.|+++|+.+.+.|+++++.+..|+||+|+|++++..   +         ++.+++..++++.||.+.||+
T Consensus       310 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~---~---------~~~~~~~~l~~~~gv~v~pg~  377 (409)
T PRK07590        310 GKAQIKELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDG---M---------SSWDFFDKLLQEANVVGTPGS  377 (409)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCcceEEEEECCCC---C---------CHHHHHHHHHHHCCEEEeChh
Confidence            4579999999999999999999998888888899999999999853   1         366788888778899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      .|+..     +.+++||+++.+++.+++++++|.+++
T Consensus       378 ~f~~~-----~~~~iRi~~~~~~~~l~~~l~rl~~~~  409 (409)
T PRK07590        378 GFGPS-----GEGYFRLSAFGSRENVLEAMERIKKAL  409 (409)
T ss_pred             HhCCC-----CCCEEEEEccCCHHHHHHHHHHHHhhC
Confidence            99743     468999998778899999999998753

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.70  E-value=3.9e-16  Score=117.92  Aligned_cols=99  Identities=15%  Similarity=0.097  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.|+++|+.+.+.|+++++.+..|+||||+|++++.              ++.+++..|. ++||.|.||+.
T Consensus       332 ~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~--------------~~~~~~~~l~-~~gV~v~pg~~  396 (431)
T PRK15481        332 QARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDT--------------DSQATALTLA-KSGWLVREGEA  396 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCC--------------CHHHHHHHHH-HCCcEEecCCc
Confidence            46899999999999999999999888888899999999999974              2557888865 78999999999


Q ss_pred             cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      |+...    ..+++|+||+. +++++++++++|.+++++
T Consensus       397 f~~~~----~~~~iRis~~~~~~~~i~~~~~~l~~~~~~  431 (431)
T PRK15481        397 FGVSA----PSHGLRITLSTLNDAEINRLAADLHQALNR  431 (431)
T ss_pred             cccCC----CCCeEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence            97532    35799999997 889999999999988764

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.70  E-value=3.4e-16  Score=117.16  Aligned_cols=101  Identities=19%  Similarity=0.293  Sum_probs=87.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.+.+.|++++++.|+++++.+.+.|+++|+++..|+||+|+|++++..   .         ++.+++..++.++||.|.
T Consensus       284 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~~~---~---------~~~~~~~~l~~~~gv~v~  351 (399)
T PRK07681        284 LRNGAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKG---W---------TSLSFAYALMDRANVVVT  351 (399)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEEEECCCC---C---------CHHHHHHHHHHhCCEEEe
Confidence            3455679999999999999999999998888888899999999999853   1         367888998866999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      ||+.|+..     +++|+|++|+.+.+++++++++|.+
T Consensus       352 pg~~f~~~-----~~~~iRis~~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        352 PGHAFGPH-----GEGFVRIALVQDEEVLQQAVENIRN  384 (399)
T ss_pred             CChhhCcC-----CCCeEEEEecCCHHHHHHHHHHHHH
Confidence            99999753     4689999999888999999999987

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.69  E-value=3.7e-16  Score=119.63  Aligned_cols=111  Identities=16%  Similarity=0.235  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      ++++++.|++||+.+.+.|+++ |+++..|+||||+|++++...............++..++..++.+.||.++||+.|+
T Consensus       364 ~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~  443 (481)
T PTZ00377        364 RDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFG  443 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccC
Confidence            3444456899999999999988 899999999999998875210000000000011245677778889999999999998


Q ss_pred             cCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           89 SDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ..    .+.+|+|+||+.+++++++++++|.+++++
T Consensus       444 ~~----~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        444 QK----PGTYHFRITILPPEEQIEEMVKKIKEFHES  475 (481)
T ss_pred             CC----CCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            53    246799999998788999999999988763

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.69  E-value=4.5e-16  Score=116.17  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=88.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhC-C-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            4 APDKCYFYTISEELRPKREILADALDKA-G-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      .....|+++.++.|+++|+.+.+.|+++ + +.+.+|+||||+|++++..   +         ++.+++..|+++.||.+
T Consensus       279 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~---~---------~~~~~~~~l~~~~gv~v  346 (389)
T PRK05957        279 QVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD---L---------NDFELVKQLIREYRVAV  346 (389)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCC---C---------ChHHHHHHHHHHCCEEE
Confidence            3445789999999999999999999887 5 4788999999999999753   2         47789999877789999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      .||+.|+..     .++|+|++|+. +++.+++|+++|.+.+++
T Consensus       347 ~pg~~f~~~-----~~~~iRis~~~~~~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        347 IPGTTFGMK-----NGCYLRIAYGALQKATAKEGIERLVQGLKT  385 (389)
T ss_pred             ccchhhCCC-----CCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            999999653     35799999986 889999999999998875

>PLN02656 tyrosine transaminase

Probab=99.69  E-value=6e-16  Score=116.29  Aligned_cols=106  Identities=18%  Similarity=0.301  Sum_probs=85.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.|++++++.|+++|+.+.+.|+++ ++. +..|+||||+|++++....  .     +..++.+++..++.++||.+.|
T Consensus       297 ~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~--~-----~~~~~~~~~~~~l~~~gV~v~p  369 (409)
T PLN02656        297 DESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLL--E-----DISDDIDFCFKLAREESVIILP  369 (409)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhc--C-----CCCCHHHHHHHHHHhCCEEEec
Confidence            46799999999999999999999887 344 4689999999999974210  0     0002446666667899999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN  125 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~  125 (126)
                      |+.|+.       ++|+||+|+.+++.+++|+++|.+++.++
T Consensus       370 g~~fg~-------~~~iRi~~~~~~e~l~eal~rl~~~~~~~  404 (409)
T PLN02656        370 GTAVGL-------KNWLRITFAADPSSLEEALGRIKSFYLRH  404 (409)
T ss_pred             chhcCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence            999962       57999999999999999999999988765

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.69  E-value=5e-16  Score=115.58  Aligned_cols=101  Identities=19%  Similarity=0.267  Sum_probs=86.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.+.+.|++++++.|+++++.+.+.|++.++++..|+||||+|++++..   .         ++.+++..|++++||.+.
T Consensus       284 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~---~---------~~~~l~~~ll~~~gi~v~  351 (385)
T PRK09276        284 LNGPQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPKG---Y---------TSAEFATLLLDKAGVVVT  351 (385)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEECCCC---C---------CHHHHHHHHHHhCCEEEC
Confidence            3445789999999999999999999998888888999999999999853   1         367888888777899999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      ||+.|+..     +++++|++|+.+++.+.+++++|.+
T Consensus       352 ~g~~f~~~-----~~~~~Ris~~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        352 PGNGFGEY-----GEGYFRIALTVPDERIEEAVERIKK  384 (385)
T ss_pred             CchhhCCC-----CCCeEEEEeCCCHHHHHHHHHHHhh
Confidence            99999643     4679999999888999999999865

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.69  E-value=6.1e-16  Score=114.76  Aligned_cols=105  Identities=25%  Similarity=0.425  Sum_probs=89.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +...+.|++++++.++++++.+.+.|+++ ++++..|+||+|+|++++...            ++.+++..|+.+.||.+
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~------------~~~~~~~~ll~~~gV~v  344 (382)
T PRK06108        277 LDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVT------------DSLALAKRLVDEAGLGL  344 (382)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCC------------CHHHHHHHHHHhCCEEE
Confidence            34456789999999999999999999887 788889999999999997531            36688888877889999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .||+.|+..     +.+++|++|+.+++++++++++|.+++++
T Consensus       345 ~pg~~f~~~-----~~~~~Ris~~~~~~~l~~~l~~l~~~l~~  382 (382)
T PRK06108        345 APGTAFGPG-----GEGFLRWCFARDPARLDEAVERLRRFLAR  382 (382)
T ss_pred             eCchhhCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence            999999642     46899999999889999999999988753

>PRK08068 transaminase; Reviewed

Probab=99.68  E-value=5.9e-16  Score=115.46  Aligned_cols=101  Identities=19%  Similarity=0.298  Sum_probs=87.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ..+..|++++++.|+++|+.+.+.|++.|+.+.+|+||||+|++++..   .         ++.++++.|+.++||.|.|
T Consensus       286 ~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g~~~~~v~~~~~---~---------~~~~~~~~l~~~~gi~v~p  353 (389)
T PRK08068        286 LSDQSCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAWMPVPKG---Y---------TSEQFADLLLEKAHVAVAP  353 (389)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCCC---C---------CHHHHHHHHHHhCCEEEec
Confidence            345589999999999999999999988888888999999999999853   1         3678999987668999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      |+.|+..     +.+++|++|+.+++.+++++++|.++
T Consensus       354 g~~f~~~-----~~~~iRi~~~~~~~~l~~al~~l~~~  386 (389)
T PRK08068        354 GNGFGEH-----GEGYVRVGLLTDEERLREAVERIGKL  386 (389)
T ss_pred             chHhCcc-----CCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence            9999743     46899999998889999999999764

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.68  E-value=8.8e-16  Score=114.61  Aligned_cols=101  Identities=21%  Similarity=0.384  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .|++++++.|+++++.+.+.|++. ++++..|+||||+|++++...  +         ++.+++..|++++||.|.||+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~--~---------~~~~l~~~l~~~~gv~v~pg~~  357 (391)
T PRK08361        289 KAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETG--M---------SSEDFAEWLLEKARVVVIPGTA  357 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCC--C---------CHHHHHHHHHHhCCEEEcCchh
Confidence            579999999999999999999987 788899999999999997421  1         3678888877678999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+..     +++|+|++|+.+++.+++|+++|.+.+++
T Consensus       358 f~~~-----~~~~iRi~~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        358 FGKA-----GEGYIRISYATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             hCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            9753     46899999999888999999999988764

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.68  E-value=9.5e-16  Score=114.53  Aligned_cols=106  Identities=22%  Similarity=0.369  Sum_probs=88.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+...+...+++.|+++|+.+.+.|+++++++..|+||||+|++++...   .       .++.++++.++.+.||.+.|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~~~~~~l~~~~---~-------~~~~~~~~~l~~~~gv~v~p  352 (391)
T PRK07309        283 TNGKDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGY---N-------QDSFKFLQDFARKKAVAFIP  352 (391)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEECCCCC---C-------CCHHHHHHHHHHhCCEEEeC
Confidence            3444566788999999999999999988889999999999999997531   1       03667888877789999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+..     +.+|+|++|+.+.+.+++++++|.+++++
T Consensus       353 g~~f~~~-----~~~~iRi~~~~~~~~l~~~i~~l~~~~~~  388 (391)
T PRK07309        353 GAAFGPY-----GEGYVRLSYAASMETIKEAMKRLKEYMEE  388 (391)
T ss_pred             chhhCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            9999753     46899999998888999999999988764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.68  E-value=1.2e-15  Score=114.15  Aligned_cols=106  Identities=20%  Similarity=0.304  Sum_probs=88.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+.|++++++.|+++|+.+.+.|+++ |+.+..|+||+|+|++++...  ++  +   ..++.+++..++.++||.|.||
T Consensus       294 ~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~--~~--~---~~~~~~~~~~l~~~~gI~v~pg  366 (401)
T TIGR01264       294 PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEH--FP--E---FKNDVEFTERLVAEQSVFCLPG  366 (401)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccc--cC--C---CCCHHHHHHHHHHhCCEEEeCc
Confidence            46899999999999999999999988 778888999999999986420  00  0   0035678888777899999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN  125 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~  125 (126)
                      +.|+.       ++++|++|+.+.+.+++|+++|.++++++
T Consensus       367 ~~f~~-------~~~iRis~~~~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       367 SCFEY-------PGFFRVVLTVPVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             hhcCC-------CCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            99952       57999999998899999999999998764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.68  E-value=7.9e-16  Score=114.46  Aligned_cols=101  Identities=21%  Similarity=0.270  Sum_probs=87.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.+.+.|++++++.|+++++.+.+.|+++|+++..|+||+|+|++++..   +         ++.+|+.+++.++||.|.
T Consensus       282 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~---~---------~~~~~~~~ll~~~gi~v~  349 (383)
T TIGR03540       282 LNGPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEG---Y---------TSAEFAARLLEETGVVVT  349 (383)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcceEEEEECCCC---C---------CHHHHHHHHHHHCCEEEe
Confidence            3455789999999999999999999998888888999999999999853   2         367888887778899999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      ||+.|+..     +.+++|++|+.+.+.+++++++|.+
T Consensus       350 ~g~~f~~~-----~~~~~Ris~~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       350 PGVGFGEY-----GEGYIRISLTVPDERLEEAVARIKK  382 (383)
T ss_pred             cchhhCcc-----CCCeEEEEecCCHHHHHHHHHHHhh
Confidence            99999643     3689999999888999999999864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.68  E-value=9.4e-16  Score=114.40  Aligned_cols=107  Identities=31%  Similarity=0.559  Sum_probs=88.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHh-----
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKN-----   76 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----   76 (126)
                      +...+.|++++++.|+++++.+.+.|+++ ++.+..|+||||+|++++..             ++.+++.+++.+     
T Consensus       280 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~-------------~~~~~~~~l~~~~~~~~  346 (397)
T PRK07568        280 LDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVD-------------DAEDFAKWLLTDFNYNG  346 (397)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCCC-------------CHHHHHHHHHhhccccc
Confidence            34457899999999999999999999887 78888999999999999742             366788887654     


Q ss_pred             CCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           77 VKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        77 ~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .||.+.||+.|+...  ..+.+++||+|+.+.+.+++++++|.+++++
T Consensus       347 ~gv~v~pg~~f~~~~--~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~  392 (397)
T PRK07568        347 ETVMVAPASGFYATP--GLGKNEIRIAYVLNEEDLKRAMEILKEALEK  392 (397)
T ss_pred             ceEEEeCchHhcCCC--CCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            699999999996431  0135799999998789999999999988764

>PRK07337 aminotransferase; Validated

Probab=99.67  E-value=1.3e-15  Score=113.52  Aligned_cols=104  Identities=19%  Similarity=0.317  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++++++.|+++|+.+.+.|+++++.+ ..|+||+|+|++++....    +   +..++.+|+.+++.++||.|.||+.
T Consensus       283 ~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~----~---~~~~~~~~~~~ll~~~gv~v~pg~~  355 (388)
T PRK07337        283 AIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAH----P---AAGDSAALTQAMLHDAGVVLVPGRD  355 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccC----C---CCCCHHHHHHHHHHhCCEEEeCchh
Confidence            5678899999999999999999887664 579999999999975210    0   0013678888877889999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+..    .+.+|+|++|+.+.+.+++|+++|.+++
T Consensus       356 f~~~----~~~~~~Ri~~~~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        356 FGPH----APRDYIRLSYATSMSRLEEAVARLGKLF  387 (388)
T ss_pred             hCCC----CCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence            9753    2468999999998899999999998765

>PRK07683 aminotransferase A; Validated

Probab=99.67  E-value=1.2e-15  Score=113.81  Aligned_cols=106  Identities=21%  Similarity=0.347  Sum_probs=90.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.+.+.|++++++.|+++++.+.+.|.+.++.+..|+||||+|+.++...  .         ++.+++..++.++||.+.
T Consensus       278 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~ll~~~gI~v~  346 (387)
T PRK07683        278 LTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGHFT--M---------SSFDFALDLVEEAGLAVV  346 (387)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEEEEecccCC--C---------CHHHHHHHHHHhCCEEEc
Confidence            34455789999999999999999999888888899999999999987521  1         366788777788999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+..     +++++||+++.+++++++|+++|.+++.+
T Consensus       347 pg~~f~~~-----~~~~~Ri~~~~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        347 PGSAFSEY-----GEGYVRLSYAYSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             CchhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            99999743     46899999999899999999999988763

>PRK08960 hypothetical protein; Provisional

Probab=99.67  E-value=1.4e-15  Score=113.43  Aligned_cols=103  Identities=18%  Similarity=0.289  Sum_probs=86.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+.|+.++++.|+++|+.+.+.|+++|+.+ ..|+||+|+|+++++..  .         ++.+|+..++.++||.|.||
T Consensus       283 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~--~---------~~~~~~~~ll~~~gi~v~pg  351 (387)
T PRK08960        283 TLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFG--G---------DAFAFCRHFLETEHVAFTPG  351 (387)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccC--C---------CHHHHHHHHHHhCCEEEcCc
Confidence            457999999999999999999999887665 57999999999998521  1         36788888777899999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +.|+..    ...+|+|++|+.+.+.+++|+++|.++++
T Consensus       352 ~~f~~~----~~~~~iRi~~~~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        352 LDFGRH----QAGQHVRFAYTQSLPRLQEAVERIARGLR  386 (387)
T ss_pred             hHhCCC----CCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence            999753    13579999999988999999999988764

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.67  E-value=1.2e-15  Score=114.06  Aligned_cols=102  Identities=19%  Similarity=0.238  Sum_probs=86.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ++..+.|++++++.|+++++.+.+.|++.++++..|+||||+|++++..   .         ++.+++..++.++||.|.
T Consensus       288 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~~~~~~~---~---------~~~~~~~~~l~~~gV~v~  355 (394)
T PRK05942        288 LQLPDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWVPCPVG---M---------GSTDFALNVLQKTGVVVT  355 (394)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeeEEEEECCCC---C---------CHHHHHHHHHHHCCEEEe
Confidence            3445679999999999999999999988888888999999999999853   1         356777777778999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      ||+.|+..     +++|+|++|+.+.+.+.+++++|.++
T Consensus       356 ~g~~f~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~  389 (394)
T PRK05942        356 PGNAFGEG-----GEGYVRISLIADCDRLGEALDRLKQA  389 (394)
T ss_pred             CChhhCcC-----CCCeEEEEecCCHHHHHHHHHHHHHh
Confidence            99999743     46899999998889999999999765

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.67  E-value=1.5e-15  Score=114.21  Aligned_cols=105  Identities=20%  Similarity=0.356  Sum_probs=87.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+.|++++++.|+++|+.+.+.|+++ ++.+..|+||+|+|++++...  +.     +..++.++++.|++++||.+.||
T Consensus       303 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~--~~-----~~~~~~~~~~~ll~~~gV~v~pg  375 (412)
T PTZ00433        303 PQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK--FR-----DIKSDVEFYEKLLEEENVQVLPG  375 (412)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhh--cC-----CCCCHHHHHHHHHHhcCEEEeCc
Confidence            46899999999999999999999886 788889999999999997421  00     00035688888876789999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +.|+.       .+|+|++|+.+++.+++|+++|.+++++
T Consensus       376 ~~f~~-------~~~iRis~~~~~e~l~~al~~l~~~~~~  408 (412)
T PTZ00433        376 EIFHM-------PGFTRLTISRPVEVLREAVERIKAFCER  408 (412)
T ss_pred             cccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            99963       4799999999888999999999998763

>KOG0257|consensus

Probab=99.67  E-value=5.2e-17  Score=119.65  Aligned_cols=112  Identities=38%  Similarity=0.670  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccC-CCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLD-TESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .++..+.+.|++||+++.+.|+++|+++..|+|+||+|++++... .++.. ...+.+++..++.+++.+.||+++|++.
T Consensus       303 y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~gayyl~adfs~~~-~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~sa  381 (420)
T KOG0257|consen  303 YFITELVKEYKEKRDILAKALEELGLKVTGPEGAYYLWADFSLAK-SWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSA  381 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceEEEEeccccc-cCCcchhhccCCCceeeehhhhccCcEEEeCchh
Confidence            456669999999999999999999999999999999999999321 12221 1223446788999999999999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      ||++++.....+++|++|+.+++.++.|+++|..
T Consensus       382 F~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~  415 (420)
T KOG0257|consen  382 FGSREHIKVAERLVRFCFCKADETLRKAIERLKK  415 (420)
T ss_pred             cCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            9987532223689999999999999999999983

>PRK08363 alanine aminotransferase; Validated

Probab=99.67  E-value=1.4e-15  Score=113.79  Aligned_cols=107  Identities=17%  Similarity=0.289  Sum_probs=88.6

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      |.+.++|++++++.|+++++.+.+.|.++ ++.+..|+||||+|++++...  ..        ++.+++..++.++||.|
T Consensus       287 l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~--~~--------~~~~~~~~~l~~~gV~v  356 (398)
T PRK08363        287 LTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGP--WK--------DDKEFVLDVLHEAHVLF  356 (398)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCC--CC--------CHHHHHHHHHHhCCEEE
Confidence            34456899999999999999999999887 788889999999999997521  00        25567666678999999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .||+.|+..     +++|+|++|+.+++.+++++++|.+++++
T Consensus       357 ~~g~~f~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        357 VHGSGFGEY-----GAGHFRLVFLPPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             eCchhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            999999743     46899999988889999999999988764

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.67  E-value=2e-15  Score=113.16  Aligned_cols=105  Identities=19%  Similarity=0.319  Sum_probs=87.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+.|++++++.|+++|+.+.+.|+.+ |+.+..|+||+|+|++++...  .+     +..++.+++..+++++||.|.||
T Consensus       296 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~--~~-----~~~~~~~~~~~l~~~~gv~v~pg  368 (403)
T TIGR01265       296 PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELEL--FP-----EIKDDVDFCEKLVREESVICLPG  368 (403)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccc--cC-----CCCCHHHHHHHHHHhCCEEEeCc
Confidence            46899999999999999999999887 788788999999999997531  00     00036688888777899999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +.|+.       ++|+|++|+.+++.+++|+++|.+++++
T Consensus       369 ~~f~~-------~~~iRis~~~~~~~l~~~l~~l~~~~~~  401 (403)
T TIGR01265       369 SAFGL-------PNWVRITITVPESMLEEACSRIKEFCER  401 (403)
T ss_pred             cccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            99962       5799999999888999999999998864

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK12414 putative aminotransferase; Provisional

Probab=99.66  E-value=1.6e-15  Score=113.02  Aligned_cols=99  Identities=28%  Similarity=0.470  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      ++.++++.|+++|+.+.+.|+++|+.+.+|+||||+|++++.... .         ++.+++..++.++||.+.||+.|+
T Consensus       285 ~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~~~-~---------~~~~~~~~~l~~~gV~v~pg~~f~  354 (384)
T PRK12414        285 SYLGLGAFYQRKRDLLARELAGSRFELLPSEGSFFMLARFRHFSD-E---------SDSDFVLRLIRDARVATIPLSAFY  354 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCcceEEEEcccccCC-C---------CHHHHHHHHHHhCCEEEecchhhc
Confidence            455789999999999999999888888899999999999875210 0         255777667778999999999997


Q ss_pred             cCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           89 SDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      ...   ...+|+||+|+.+++.+++|+++|.+
T Consensus       355 ~~~---~~~~~iRis~~~~~~~~~~~~~rl~~  383 (384)
T PRK12414        355 TDG---TDTGLIRLSFSKDDATLVEGARRLCS  383 (384)
T ss_pred             CCC---CCCCEEEEEecCCHHHHHHHHHHHhh
Confidence            532   13589999999989999999999975

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.66  E-value=2.1e-15  Score=112.79  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=85.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|+++.++.|+++|+.+.+.|.++ +.+..|+||+|+|++++.              ++.+++..|+.++||.+.||+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~~g~f~~~~~~~--------------~~~~~~~~ll~~~gv~v~pg~  356 (396)
T PRK09147        292 DEAHVRENRALYREKFDAVTPILAPV-LDVQLPDAGFYLWAKVPG--------------DDTEFARRLYADYNVTVLPGS  356 (396)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeEEEEEECCC--------------CHHHHHHHHHHhCCEEEeCCc
Confidence            35799999999999999999999875 777889999999999982              266788888778899999999


Q ss_pred             CcccCcc-cCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEH-KHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~-~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .|+.... ...+.+|+||+|+.+++++++++++|.++++
T Consensus       357 ~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        357 YLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR  395 (396)
T ss_pred             cccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence            9974210 0124689999999988999999999998764

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.66  E-value=1.9e-15  Score=116.67  Aligned_cols=104  Identities=19%  Similarity=0.296  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++|+...++.| ++|+.+.+.|+++ |+++..|+||||+|++++.....+.        ++.+++..++.++||.|.||+
T Consensus       410 ~~~~~~~~~~~-~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~~~~--------~~~~~~~~ll~~~gV~v~pg~  480 (517)
T PRK13355        410 KDYLVPGGRVY-EQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKFNIH--------DDEQFALDLLHDKKVLIVQGT  480 (517)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccCCCC--------CHHHHHHHHHHhCCEEEeCcc
Confidence            46777766665 5689999999888 8999999999999999874210011        356777777889999999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .|+..     .++|+|++|+.+++.|++|+++|.+++.+
T Consensus       481 ~F~~~-----~~~~~Ris~~~~~~~l~~a~~rl~~~~~~  514 (517)
T PRK13355        481 GFNWD-----KPDHFRVVYLPRLEDLEDAMDRLADFFSY  514 (517)
T ss_pred             hhCCC-----CcCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            99753     47899999988999999999999998763

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.65  E-value=2.8e-15  Score=111.98  Aligned_cols=101  Identities=17%  Similarity=0.254  Sum_probs=83.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .++|+++.++.|+++++.+.+.|+++ +.+..|+||+|+|++++.              ++.++++.+++++||.|.||+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~gg~f~~~~~~~--------------~~~~~~~~l~~~~gV~v~pg~  355 (393)
T TIGR03538       291 DEQHVRENRALYREKFAAVLEILGQV-LDLELPDAGFYLWPKVPG--------------DDEAFARALYEEENVTVLPGR  355 (393)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhh-CcccCCCeeEEEEEECCC--------------CHHHHHHHHHHHCCEEEeCCc
Confidence            35799999999999999999999875 667889999999999982              256788887778999999999


Q ss_pred             CcccCcc-cCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           86 AFYSDEH-KHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        86 ~f~~~~~-~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      .|+.... ...+.+++||+|+.+++++++++++|.++
T Consensus       356 ~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       356 FLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF  392 (393)
T ss_pred             cccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence            9864210 01246899999998889999999999875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.65  E-value=1.4e-15  Score=117.32  Aligned_cols=114  Identities=11%  Similarity=0.150  Sum_probs=87.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCC----CCCchhhHHHHHHHHHhCC
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDT----ESDKYEDFKFAKWMTKNVK   78 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~g   78 (126)
                      +...+.|++.+++.|++||+.+.+.|. .++...+|+||||+|++++.......+..    ..+..++.+|+.+|+.+.|
T Consensus       398 l~~~~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~g  476 (527)
T PRK09275        398 LDEEDAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETG  476 (527)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCC
Confidence            456678999999999999999988883 23444689999999999975310000000    0011146789999999999


Q ss_pred             eeEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           79 LQGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        79 V~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |+++||+.|+.      .++++|+||+. +++.+.++.+||.+++.
T Consensus       477 V~v~PG~~Fg~------~~~~vRis~a~~~~~~~~~~~~rl~~~l~  516 (527)
T PRK09275        477 VVLLPGGGFGG------PEWSVRVSLANLNEEDYAKIGKAIRKLLD  516 (527)
T ss_pred             EEEeCchhhCC------CCCeEEEEEecCCHHHHHHHHHHHHHHHH
Confidence            99999999975      35789999996 88999999999998875

>PLN02187 rooty/superroot1

Probab=99.64  E-value=4.4e-15  Score=113.34  Aligned_cols=105  Identities=18%  Similarity=0.283  Sum_probs=85.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCC-Cc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAG-MV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g-~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.|++++++.|+++|+.+.+.|++++ +. +..|+||+|+|++++....  +     +..++.+++..++.++||.+.|
T Consensus       332 ~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~--~-----~~~~~~~~~~~ll~~~gV~v~p  404 (462)
T PLN02187        332 DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLM--D-----NIKDDIDFCVKLAREENLVFLP  404 (462)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhC--C-----CCCCHHHHHHHHHhhCCEEEEC
Confidence            468999999999999999999999874 33 4579999999999863210  0     0013557777777899999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+.       ++|+||+|+.+++.+++|++||.+++++
T Consensus       405 G~~fg~-------~~~iRis~~~~~e~l~~al~rL~~~l~~  438 (462)
T PLN02187        405 GDALGL-------KNWMRITIGVEAHMLEDALERLKGFCTR  438 (462)
T ss_pred             ccccCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            999962       5899999999999999999999998863

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.63  E-value=8.6e-15  Score=109.75  Aligned_cols=97  Identities=20%  Similarity=0.277  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .++.+.++.|+++++.+.+.|++.++++..|.||+|+|++++..   +         ++.+++..++.+.||.+.||+.|
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~---~---------~~~~l~~~l~~~~gv~v~pg~~f  372 (402)
T TIGR03542       305 QPILEAISYYMENARILRKALEAAGFKVYGGEHAPYLWVKTPEG---I---------SSWDFFDFLLYQYHVVGTPGSGF  372 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCceecCCCceeEEEEECCCC---C---------CHHHHHHHHHHhCCEEEeCchhh
Confidence            56788899999999999999988888888889999999999853   2         36688888877789999999999


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      +..     +.+|+||+++.+++.+++|+++|.++
T Consensus       373 ~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       373 GPS-----GEGFVRFSAFGKRENIVEACERIKEA  401 (402)
T ss_pred             CCC-----CCCEEEEEecCCHHHHHHHHHHHHhh
Confidence            643     46899999988889999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.62  E-value=9.7e-15  Score=109.79  Aligned_cols=104  Identities=18%  Similarity=0.308  Sum_probs=84.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCC-Cc-ccCCCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            6 DKCYFYTISEELRPKREILADALDKAG-MV-PVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g-~~-~~~p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .+.|+++.++.++++++.+.+.|.+++ .. +..|+||||+|++++.... .+.        ++.+++..++.++||.+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~--------~~~~~~~~ll~~~gV~v~  369 (409)
T PLN00143        298 TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIE--------DDMEFCLKLAKEESLIIL  369 (409)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCC--------CHHHHHHHHHHhCCEEEe
Confidence            457999999999999999999998873 33 3579999999999974210 011        356777777789999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+.       ++|+||+|+.+.+++++|++||.+++++
T Consensus       370 pg~~f~~-------~~~iRi~~~~~~~~l~~al~rl~~~l~~  404 (409)
T PLN00143        370 PGVTVGL-------KNWLRITFAVEQSSLEDGLGRLKSFCGR  404 (409)
T ss_pred             CccccCC-------CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            9999952       5799999999899999999999998864

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.62  E-value=7.8e-15  Score=108.08  Aligned_cols=96  Identities=16%  Similarity=0.250  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|+++.|+.|+++++.+.+.|.+.|+++..|+||||+|++++..   .         ++.++++.|+ ++||.|.||+.
T Consensus       254 ~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~---~---------~~~~l~~~L~-~~gv~v~~g~~  320 (350)
T TIGR03537       254 DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSG---I---------DAKDYALRLL-ENGIVVAPGEN  320 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEEEEECCCC---C---------CHHHHHHHHH-HCCEEEcCchh
Confidence            568999999999999999999998888889999999999999853   1         3678889875 68999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      |+..     ..+++|++|+.+++++++++++|.+
T Consensus       321 f~~~-----~~~~~Ri~~~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       321 FGSG-----EEGYVRVALVPTLEECEEALRLWER  349 (350)
T ss_pred             hCCC-----CCCEEEEEecCCHHHHHHHHHHHhc
Confidence            9753     3689999998788999999999864

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PLN02672 methionine S-methyltransferase

Probab=99.61  E-value=1.5e-14  Score=118.33  Aligned_cols=109  Identities=18%  Similarity=0.157  Sum_probs=85.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCccc---ccccCCC-CC-chhhHHHHHHHHHhCCeeE
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP---MLRLDTE-SD-KYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~---~~~~~~~-~~-~~~~~~~~~~l~~~~gV~v   81 (126)
                      ..|+.++++.|++||+.+.+.|+++|+++.+|+||||+|++++....   .++.++. .+ ..++.+|+++|+++.||.+
T Consensus       965 ~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV 1044 (1082)
T PLN02672        965 LDGVAEQKKILKSRAERLKETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCI 1044 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEE
Confidence            35788889999999999999999889999999999999998753110   0000000 00 1146789999987889999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      .||+.|+.       ++|+||+|+.+.+.+++++++|.++.
T Consensus      1045 ~PGs~FG~-------~g~~RIsfa~~~e~LeeALerL~kf~ 1078 (1082)
T PLN02672       1045 NSSSWTGI-------PGYCRFSFALEDSEFDRALKAIARFK 1078 (1082)
T ss_pred             ecCcccCC-------CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence            99988753       57999999998889999999998764

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.60  E-value=1.9e-14  Score=106.45  Aligned_cols=93  Identities=18%  Similarity=0.293  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ++|++++++.|+++++.+.+.|+++|+.+..|+||||+|++++.              ++.++++.| .+.||.+.||+.
T Consensus       271 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l-~~~gv~v~pg~~  335 (364)
T PRK07865        271 DAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWATRGE--------------DCWDTVAWL-AERGILVAPGDF  335 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCccEEEEEeCCC--------------CHHHHHHHH-HHCCEEEeCccc
Confidence            57899999999999999999999888888899999999998852              245677775 588999999998


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQ  119 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~  119 (126)
                      |+..     .++++||+|+.+++++++++++|.
T Consensus       336 f~~~-----~~~~iRi~~~~~~~~~~~~~~~l~  363 (364)
T PRK07865        336 YGPA-----GAQHVRVALTATDERIAAAVERLA  363 (364)
T ss_pred             cCcC-----CCCEEEEEecCCHHHHHHHHHHhh
Confidence            8643     468999999988899999999985

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.60  E-value=9.4e-15  Score=112.58  Aligned_cols=113  Identities=12%  Similarity=0.138  Sum_probs=86.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCC----CCCchhhHHHHHHHHHhCCe
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDT----ESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~gV   79 (126)
                      .+.+.|++.+++.|++||+.+.+.| ...+...+|+||||+|++++.......+..    ..+..++.+|+.+|+++.||
T Consensus       398 ~~~~~y~~~~~~~~~~R~~~l~~~L-g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV  476 (521)
T TIGR03801       398 DKENAYKAETKDICRRREKLLFRGL-GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGI  476 (521)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhc-CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCE
Confidence            4567899999999999999999998 223334679999999999985321000000    00011467899999999999


Q ss_pred             eEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           80 QGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      +++||+.|+..      ++++|+||+. +++.++++.++|.+++.
T Consensus       477 ~v~PG~~Fg~~------~~~vRisla~l~~~~~~~~~~rl~~~~~  515 (521)
T TIGR03801       477 VLLPGGGFGGP------EWSVRVSLANLNEYDYAEIGRAIRKILD  515 (521)
T ss_pred             EEeCchhcCCC------CCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence            99999999852      5689999995 88889999999998774

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>KOG0256|consensus

Probab=99.60  E-value=1.4e-14  Score=106.77  Aligned_cols=107  Identities=24%  Similarity=0.352  Sum_probs=89.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|++..+++++.+++++.+.|++.|++|.+.++|+|+|+++++.....   .   .....++.+.++.+.|+.+.||+
T Consensus       353 ~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~---t---fe~El~Lw~~i~~~vklnlSpG~  426 (471)
T KOG0256|consen  353 TREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSL---T---FEGELELWERILDNVKLNLSPGS  426 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcC---C---hHHHHHHHHHHHHhhccccCCCC
Confidence            35789999999999999999999999999999999999999998753211   0   11245788888877799999999


Q ss_pred             CcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .|...+     ++|||++|+. .+++++-|++||...+.
T Consensus       427 s~~C~E-----pGWFRvcFAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  427 SCHCHE-----PGWFRVCFANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             cceecC-----CCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence            999874     8999999998 66777779999998764

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.59  E-value=2.5e-14  Score=105.74  Aligned_cols=93  Identities=18%  Similarity=0.260  Sum_probs=80.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|++++++.|+++++.+.+.|++.|+.+..|+||||+|++++.              ++.+++..| .+.||.|.||+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~~~~~~~~~~~~--------------~~~~~~~~l-~~~gV~v~pg~  328 (357)
T TIGR03539       264 DDGHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLWATRGE--------------DAWDTVDRL-AELGILVAPGD  328 (357)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCccEEEEEECCC--------------CHHHHHHHH-HhCCEEECCcc
Confidence            357899999999999999999998888889999999999999863              255677775 58899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSIL  118 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l  118 (126)
                      .|+..     +++++|++|+.+.+++++++++|
T Consensus       329 ~f~~~-----~~~~iRis~~~~~~~i~~~~~~l  356 (357)
T TIGR03539       329 FYGPA-----GSQHVRVALTATDERIAAAVARL  356 (357)
T ss_pred             ccCCC-----CCCeEEEEecCCHHHHHHHHHhh
Confidence            88642     46899999999889999999887

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>KOG0259|consensus

Probab=99.58  E-value=2.8e-14  Score=104.51  Aligned_cols=106  Identities=19%  Similarity=0.312  Sum_probs=92.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      +++|+...+..++.+-++.++.|+++ ++. +..|+|.||+|+.++....  +     +..+|.+|+..|++++.|.+.|
T Consensus       327 p~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~--~-----~~~dD~dFc~kL~~Eesv~~LP  399 (447)
T KOG0259|consen  327 PEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLF--P-----DIEDDVDFCQKLAREESVICLP  399 (447)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhh--c-----cccccHHHHHHHhhhcceEEec
Confidence            56899999999999999999999998 787 5899999999999975321  0     1126889999999999999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN  125 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~  125 (126)
                      |++|+.       ++|+|++++.+.+.+++|++||++++.|+
T Consensus       400 G~af~~-------~nw~Ri~i~~~~~~leea~~Rik~Fc~RH  434 (447)
T KOG0259|consen  400 GQAFGL-------KNWLRIVITVEEEMLEEAFSRIKEFCDRH  434 (447)
T ss_pred             cccccC-------CCeEEEEEccChHHHHHHHHHHHHHHHhh
Confidence            999984       79999999999999999999999988754

>PRK09265 aminotransferase AlaT; Validated

Probab=99.58  E-value=4.7e-14  Score=105.80  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788           14 SEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH   92 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~   92 (126)
                      ++.+.++|+.+.+.|+++ ++.+..|+||||+|++++.......        ++.+++..++.+.||.|.||+.|+..  
T Consensus       303 ~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~gv~v~pg~~F~~~--  372 (404)
T PRK09265        303 GGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIH--------DDEQFVLDLLLQEKVLLVQGTGFNWP--  372 (404)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccCCC--------CHHHHHHHHHHhCCEEEECchhhCCC--
Confidence            356788899999999887 7888999999999999975210000        24444455567999999999999643  


Q ss_pred             cCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           93 KHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        93 ~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                         .++|+|++|+.+.+.+++++++|.+++++
T Consensus       373 ---~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~  401 (404)
T PRK09265        373 ---EPDHFRIVTLPRVDDLEEAIGRIGRFLSG  401 (404)
T ss_pred             ---CCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence               36899999988899999999999988763

>PRK05839 hypothetical protein; Provisional

Probab=99.58  E-value=3.3e-14  Score=105.77  Aligned_cols=95  Identities=18%  Similarity=0.289  Sum_probs=79.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|++++++.|+++|+.+.+.|   ++.  .|+||+|+|++++.               +.+++..|++++||.|.||+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~gg~fi~~~~~~---------------~~~~~~~l~~~~gi~v~pg~  338 (374)
T PRK05839        279 DDEHAEFFRNIYAKNLKLAREIL---GIT--IPPATFYVWLPVDN---------------DEEFTKKLYQNEGIKVLPGS  338 (374)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhc---CCC--CCCeeEEEEEeCCC---------------hHHHHHHHHHHCCEEEeCch
Confidence            36799999999999999988876   333  79999999999863               45788887767999999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .|+...   ..++|+|++|+.+.+.+++++++|.+++.
T Consensus       339 ~f~~~~---~~~~~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        339 FLGRNG---IGKGYVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             hhCCCC---CCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence            887532   24689999999888999999999998774

>PRK07550 hypothetical protein; Provisional

Probab=99.58  E-value=4.4e-14  Score=105.30  Aligned_cols=102  Identities=15%  Similarity=0.213  Sum_probs=84.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +...++|++++++.|+++++.+.+.|.++ ++.+ .|.||+|+|++++...  .         ++.+++..|+++.||.|
T Consensus       281 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~~--~---------~~~~l~~~l~~~~gv~v  348 (386)
T PRK07550        281 LPNLADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGAYFAYVRHPFPD--R---------PSREVARRLAKEAGILC  348 (386)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCceEEEEecCCCCC--C---------CHHHHHHHHHHhcCEEE
Confidence            34457899999999999999999999886 5654 4779999999997521  1         46789898877899999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                      .||+.|+..     +.+++||+|+. +++.+++++++|.++
T Consensus       349 ~pg~~f~~~-----~~~~iRis~~~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        349 LPGTMFGPG-----QEGYLRLAFANADVAGIGELVERLRAF  384 (386)
T ss_pred             eCchhhCCC-----CCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence            999999643     46899999997 888999999999864

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.58  E-value=5.4e-14  Score=104.82  Aligned_cols=105  Identities=15%  Similarity=0.320  Sum_probs=87.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+.|++++++.|+++++.+.+.|+++ |+++..|+||+|+|++++......       ..++.++...++++.||.+.||
T Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g  358 (393)
T PRK05764        286 PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKS-------ITDSLEFAEALLEEAGVAVVPG  358 (393)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccccc-------cCCHHHHHHHHHHhCCEEEccc
Confidence            46899999999999999999999988 889899999999999997531000       0024688888777889999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +.|+.       .+++|++|+.+++.+++++++|.++++.
T Consensus       359 ~~f~~-------~~~vRis~~~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        359 IAFGA-------PGYVRLSYATSLEDLEEGLERIERFLES  391 (393)
T ss_pred             cccCC-------CCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            98863       5899999999899999999999988763

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.57  E-value=5.2e-14  Score=105.82  Aligned_cols=105  Identities=18%  Similarity=0.221  Sum_probs=81.0

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            8 CYFYT-ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         8 ~~l~~-~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .|+.+ +++.|++|++.+.+.|.+.    ++.+..|+||+|+|++++...  .         ++.++++.+ .++||.|.
T Consensus       300 ~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~--~---------~~~~~~~~l-~~~gV~v~  367 (416)
T PRK09440        300 RLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLP--I---------TTEELYQRL-KARGVLVV  367 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCC--C---------CHHHHHHHH-HHCCEEEe
Confidence            34444 7899999999999999864    356679999999999998521  1         366788875 58899999


Q ss_pred             CCCCcccCccc--CCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHK--HLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~--~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+.....  ..+.+|+||||+.+.+++++++++|.+++++
T Consensus       368 pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        368 PGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEK  411 (416)
T ss_pred             chHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            99999642100  0124699999988889999999999988764

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.52  E-value=2.2e-13  Score=101.95  Aligned_cols=90  Identities=20%  Similarity=0.368  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCccc
Q psy788           14 SEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHK   93 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~   93 (126)
                      ++.|+++|+.+.+.|+++|+.+..|+||||+|+.++..             ++.+++..| .++||.|.||+.|+.    
T Consensus       302 ~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~-------------~~~~~~~~l-~~~gv~v~~g~~f~~----  363 (394)
T PRK06836        302 VSIYKRNRDLLYDGLTELGFECVKPQGAFYLFPKSPEE-------------DDVAFCEKA-KKHNLLLVPGSGFGC----  363 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEeecCCceEEEEEeCCCC-------------CHHHHHHHH-HhCCEEEECchhcCC----
Confidence            67899999999999998888889999999999988752             366777765 688999999999963    


Q ss_pred             CCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           94 HLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        94 ~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                         .+++||+|+.+++++++++++|.+++++
T Consensus       364 ---~~~iRi~~~~~~~~~~~~i~~l~~~l~~  391 (394)
T PRK06836        364 ---PGYFRLSYCVDTETIERSLPAFEKLAKE  391 (394)
T ss_pred             ---CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence               4799999998899999999999998864

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.47  E-value=4e-13  Score=98.97  Aligned_cols=91  Identities=24%  Similarity=0.386  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +|++++++.|+++++.+.+.|++.++.+..|++|||+|+.++..             ++.++++.|+++.||.+.||+.|
T Consensus       272 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~pg~~~  338 (363)
T PF00155_consen  272 KWLEELRERLRENRDLLREALEEIGITVLPPEAGFFLWVRLDPN-------------DAEELAQELLEEYGILVRPGSYF  338 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHSBSSEEEEEESHH-------------HHHHHHHHHHHHHTEEEEEGGGG
T ss_pred             cccccchhhHHHHHHHHHHHHHHhhhheeeccCccEEEEEcccc-------------hHHHHHHHHHHhCCEEEEecCCC
Confidence            39999999999999999999998899999999999999999852             36789999886669999999999


Q ss_pred             ccCcccCCCCCeEEEEee-CChhHHHHHHHHH
Q psy788           88 YSDEHKHLGENLIRYCFF-KKDETLREASSIL  118 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~-~~~e~i~~~~~~l  118 (126)
                      +.       ++++|++++ .+++++++++++|
T Consensus       339 ~~-------~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  339 GV-------PGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             TS-------TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             CC-------CCEEEEEeccCCHHHHHHHHhhC
Confidence            74       579999995 4999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.43  E-value=3.5e-12  Score=93.55  Aligned_cols=94  Identities=12%  Similarity=0.116  Sum_probs=74.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.|+++|+.+.+.|+++|+.+..|.+|.|+|+.++.               +.++++.|+ ++||.|.||+.
T Consensus       238 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~~---------------~~~~~~~l~-~~gi~v~~~~~  301 (332)
T PRK06425        238 DYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIPD---------------AHDFYSYLL-KNGILVRLLDD  301 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcCC---------------HHHHHHHHH-HCCeEEEECCC
Confidence            46788999999999999999999888877655577799998761               557888876 67999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+..     +++|+|++++.+. +.+..++.|.+++
T Consensus       302 f~~~-----~~~~iRis~~~~~-~~~~l~~al~~~~  331 (332)
T PRK06425        302 YECL-----GEQYIRIAIRRRS-FNIKLVNALRNFL  331 (332)
T ss_pred             CCCC-----CCCEEEEEeCCHH-HHHHHHHHHHHHh
Confidence            9642     4689999999843 4466666666544

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.42  E-value=1.7e-12  Score=93.01  Aligned_cols=101  Identities=14%  Similarity=0.188  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      -+|-.|+.+-+.....|++.    .+.++.|+|+.|+|+++.+.-  +         ++.++.++| +..||.++||+.|
T Consensus       305 VIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLP--I---------tt~~LYq~L-Ka~Gvl~VPG~~F  372 (417)
T COG3977         305 VIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLP--I---------TTEELYQRL-KARGVLMVPGHYF  372 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCC--C---------CHHHHHHHH-HhCeEEEeccccc
Confidence            46788999999999999875    377899999999999998752  2         578899985 7999999999999


Q ss_pred             ccCc--ccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           88 YSDE--HKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~--~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +..-  ++++.-.++|+++..+++.|+.|+.+|.+.+.|
T Consensus       373 FpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~  411 (417)
T COG3977         373 FPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVER  411 (417)
T ss_pred             CCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            9742  233345799999999999999999999987764

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.41  E-value=5e-12  Score=93.52  Aligned_cols=93  Identities=17%  Similarity=0.256  Sum_probs=75.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..|.+.+++.|+++|+.+.+.|+++ |+.+. |.||+|+|++++.              ++.+++..++.++||.|.||+
T Consensus       262 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~--------------~~~~l~~~ll~~~gv~v~pg~  326 (360)
T PRK07392        262 RDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQG--------------SALQLQEKLLQQHRILIRDCL  326 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCC--------------CHHHHHHHHHhhCCEEEEeCC
Confidence            4688889999999999999999887 67664 5889999998863              266788887778899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCC--hhHHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKK--DETLREASSILQ  119 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~--~e~i~~~~~~l~  119 (126)
                      .|+..     +++|+||+|+.+  .+.+.++++++.
T Consensus       327 ~f~~~-----~~~~iRi~~~~~~~~~~l~~al~~~~  357 (360)
T PRK07392        327 SFPEL-----GDRYFRVAVRTEAENQRLLEALAAIL  357 (360)
T ss_pred             CCCCC-----CCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence            99642     468999999983  467888887764

>PRK07908 hypothetical protein; Provisional

Probab=99.40  E-value=7.7e-12  Score=92.12  Aligned_cols=92  Identities=13%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ...|++++++.|+++|+.+.+.|.++++++..|.||+|+|++++.               +.++...| .++||.+.||+
T Consensus       251 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~---------------~~~~~~~l-~~~gI~v~~g~  314 (349)
T PRK07908        251 AVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPD---------------AELLRKRL-RERGIAVRRGD  314 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCc---------------HHHHHHHH-HhCCEEEEECC
Confidence            346899999999999999999998888888889999999998873               33566654 68899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSIL  118 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l  118 (126)
                      .|+..     .++++|+||+.  +.+.+.++++++
T Consensus       315 ~f~~~-----~~~~vRis~~~~~~~~~l~~al~~~  344 (349)
T PRK07908        315 TFPGL-----DPDYLRLAVRPRAEVPVLVQALAEI  344 (349)
T ss_pred             CCCCC-----CCCeEEEEeCCCccHHHHHHHHHHH
Confidence            99532     36899999986  334444554444

>PRK08637 hypothetical protein; Provisional

Probab=99.40  E-value=4.2e-12  Score=94.86  Aligned_cols=93  Identities=14%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CYFYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .|+++++..|++|++.+.+.|+++    ++.+.+|+||||+|++++.    .         ++.+|+..|++++||.+.+
T Consensus       289 ~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~----~---------~~~~l~~~l~~~~gv~~~~  355 (388)
T PRK08637        289 KEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG----V---------DAEELRVHLLEKYGIGTIA  355 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh----H---------HHHHHHHHHhhhcceEEEe
Confidence            466778888999999999999765    4778899999999999973    1         3678989877778998874


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                         +        +.+++|++|+. +.+.+++++++|.+++++
T Consensus       356 ---~--------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~  386 (388)
T PRK08637        356 ---L--------NETDLRIAFSCVEEEDIPELFDSIYKAIKD  386 (388)
T ss_pred             ---c--------cCCceEEEeecCCHHHHHHHHHHHHHHHHh
Confidence               1        24689999997 889999999999998864

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.38  E-value=9.1e-12  Score=93.90  Aligned_cols=103  Identities=12%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++++++.|+++++.+.+.|+++|+.+.+|+||||+|++++....     ...+..++.++++.|+.+.+|.++||+.
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~f~l~v~lp~~~~-----~~~~~~~~~~~~~~Ll~~~~v~~~p~~~  373 (410)
T PRK06290        299 PEITEKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTK-----SGIKFENAEEFSQYLIKEKLISTVPWDD  373 (410)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCeeeEEEEECCCccc-----cCCCCCCHHHHHHHHHHhCCEEEECCcc
Confidence            36899999999999999999999888888899999999999985310     0000014678999988777888999876


Q ss_pred             cccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      |+         +|+|++++.   ++++.++-++.|.+.+.
T Consensus       374 ~~---------~~lRi~~~~~~~~~~~~~~~~~~l~~~~~  404 (410)
T PRK06290        374 AG---------HFLRFSVTFEAKDEEEEDRILEEIKRRLS  404 (410)
T ss_pred             cc---------CeEEEEEEcccccccchhHHHHHHHHHHh
Confidence            52         589999993   44555566666655543

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.38  E-value=1.4e-11  Score=91.66  Aligned_cols=104  Identities=15%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            4 APDKCYFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      ...+.|++++++.++++++.+.+.|+++ ++.+ ..|.+|.|+|++++...  .         ++.+++..|. ++||.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~---------~~~~l~~~l~-~~gi~v  337 (380)
T PRK06225        270 KVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG--I---------DPEDLVEYLL-ERKIFV  337 (380)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc--C---------CHHHHHHHHH-HCCEEE
Confidence            3456789999999999999999999886 5433 35677889999987421  1         3678888875 889999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .||+.|+..    .+++++|++|+.+++++++++++|.+++.
T Consensus       338 ~~g~~~~~~----~~~~~iR~s~~~~~e~l~~~~~~l~~~~~  375 (380)
T PRK06225        338 RQGTYTSKR----FGDRYIRVSFSIPREQVEVFCEEFPDVVE  375 (380)
T ss_pred             cCCcccCcC----CCCceEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            999877543    24689999999988999999999998875

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.34  E-value=2.4e-11  Score=89.76  Aligned_cols=90  Identities=19%  Similarity=0.121  Sum_probs=74.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|++++++.|+++|+.+.+.|....    .|.+|+|+|++++               ++.+|++.| .++||.|.||+
T Consensus       267 ~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~g~f~~~~~~---------------~~~~~~~~l-~~~gv~v~~g~  326 (357)
T PRK14809        267 DDEHVERTVETARWAREYIREELDAPT----WESAGNFVLAEVG---------------DASAVAEAA-QERGVIVRDCT  326 (357)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCCCEEEEECC---------------CHHHHHHHH-HHCCEEEEECc
Confidence            367999999999999999999996532    2678999999874               255788875 58899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .|+.       ++++|++|+. .+++++++++|.++++
T Consensus       327 ~f~~-------~~~iRls~~~-~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        327 SFGL-------PECIRITCGT-REETERAVEVLNEVLA  356 (357)
T ss_pred             cCCC-------CCeEEEecCC-HHHHHHHHHHHHHHhc
Confidence            9963       4799999986 6789999999998764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.33  E-value=1.9e-11  Score=93.49  Aligned_cols=100  Identities=16%  Similarity=0.293  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCC---
Q psy788           20 KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLG---   96 (126)
Q Consensus        20 r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~---   96 (126)
                      +++++.+.|.+.|+++..|.||+|+++++......++   ... .++.+|+.+|+.+.||.++|++.|+...++..+   
T Consensus       324 ~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~---~~~-~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~  399 (460)
T PRK13238        324 QVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIP---AEQ-FPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQL  399 (460)
T ss_pred             HHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCC---CCC-CchHHHHHHHHHHcCeeeecccceecccCCCCcccc
Confidence            5799999998889999999999999999975311010   001 136789999999999999999999875422222   


Q ss_pred             ---CCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           97 ---ENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        97 ---~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                         ..++||++++   +.+.++...++|..+.+
T Consensus       400 ~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        400 PAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE  432 (460)
T ss_pred             CCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence               5899999998   99999999999988764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.32  E-value=3.2e-11  Score=89.61  Aligned_cols=90  Identities=16%  Similarity=0.036  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|+++.++.|+++|+.+.+.|+++|+++ .|.+|+|+|++++.              ++.++++.|+ ++||.+.||+.
T Consensus       278 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~-~p~~g~fl~~~~~~--------------~~~~l~~~l~-~~gi~v~p~~~  341 (371)
T PRK05166        278 EEHLAKGVALALAERERLKKELAEMGYRI-APSRANFLFFDARR--------------PASAVAEALL-RQGVIVKPWKQ  341 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCcCee-CCCcCCEEEEeCCC--------------CHHHHHHHHH-HCCeEEecCCC
Confidence            46999999999999999999999888765 56678899998753              3667888876 67999999975


Q ss_pred             cccCcccCCCCCeEEEEeeCC--hhHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKK--DETLREASSILQ  119 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~--~e~i~~~~~~l~  119 (126)
                      ++       .++|+|++|+.+  .+.+.++++++.
T Consensus       342 ~~-------~~~~iRi~~~~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        342 PG-------FETFIRVSIGSPEENDHFVAALDKVL  369 (371)
T ss_pred             CC-------CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence            43       368999999983  466777777664

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.30  E-value=6.1e-11  Score=87.67  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=70.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.|++++++.|+++|+.+.+.|+++ ++.+.+| +|+|+|++++.              ++.+++..|+ ++||.|.||
T Consensus       258 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~l~-~~gI~v~~~  321 (356)
T PRK08056        258 DRAYQQATWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCER--------------PDIDLQRALL-TQRILIRSC  321 (356)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcCC--------------ChHHHHHHHH-HCCeEEEEC
Confidence            45789999999999999999999887 6766555 67899999873              2557888876 789999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCCh--hHHHHHHHH
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKD--ETLREASSI  117 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~~  117 (126)
                      +.|...     ..+|+|++++.++  +.+.+++++
T Consensus       322 ~~f~~~-----~~~~iRis~~~~~~~~~l~~~l~~  351 (356)
T PRK08056        322 ANYPGL-----DSRYYRVAIRSAAENERLLAALRN  351 (356)
T ss_pred             CCCCCC-----CCCEEEEEEcCHHHHHHHHHHHHH
Confidence            999532     3579999999733  344444443

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.30  E-value=6.4e-11  Score=87.59  Aligned_cols=92  Identities=15%  Similarity=0.216  Sum_probs=71.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.|+.++++.|+++|+.+.+.|+++ ++++..|+|+ |+|++++.               ..+|++.|+ ++||.|.||
T Consensus       259 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~~---------------~~~~~~~l~-~~gI~v~~~  321 (354)
T PRK06358        259 DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLEK---------------PIDLRKELL-KKGILIRSC  321 (354)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEcCc---------------hHHHHHHHH-HCCeEEEEC
Confidence            35688999999999999999999887 7788888776 89998863               457888876 689999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      +.|+..     +++|+|++++.+.+. +.-++.|.+
T Consensus       322 ~~f~~~-----~~~~iRls~~~~~~~-~~l~~~l~~  351 (354)
T PRK06358        322 SNYRGL-----DENYYRVAVKSREDN-KKLLKALEV  351 (354)
T ss_pred             CCCCCC-----CCCEEEEEeCCHHHH-HHHHHHHHH
Confidence            999532     468999999984332 444444444

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.29  E-value=3e-11  Score=90.45  Aligned_cols=83  Identities=13%  Similarity=0.251  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.|++++|+.|++||+.+.+.|++++    +++..|+||||+|++++.                 +++..++.++||.+.
T Consensus       308 ~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------------~~~~~l~~~~~V~~~  370 (396)
T PRK09257        308 EAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------------EQVDRLREEFGVYAV  370 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCH-----------------HHHHHHHHcCCEEEc
Confidence            57889999999999999999999873    677899999999998741                 244567789999987


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                      |      .     +    ||+|+. +++.+++++++|.++
T Consensus       371 p------~-----~----ri~~~~~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        371 G------S-----G----RINVAGLNESNIDYVAEAIAAV  395 (396)
T ss_pred             C------C-----C----eEEEeeCCHHHHHHHHHHHHhh
Confidence            7      1     2    999985 999999999999875

>PLN02397 aspartate transaminase

Probab=99.28  E-value=4.1e-11  Score=90.66  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            9 YFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +++.+++.|+++|+.+.+.|++++    +.+..|+||||+|++++                + +|++.|++++||.+++ 
T Consensus       333 ~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~----------------~-~~~~~Ll~~~~V~v~~-  394 (423)
T PLN02397        333 ELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN----------------K-EQVDRMTKEYHIYMTR-  394 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC----------------H-HHHHHHHHhCCEEECC-
Confidence            478999999999999999999876    77788999999999774                2 3888999999999962 


Q ss_pred             CCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                                  .+  |++|+. +.+.+++++++|.+++.
T Consensus       395 ------------~~--Ri~~~~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        395 ------------DG--RISMAGLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             ------------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence                        12  999985 99999999999998875

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.26  E-value=1.6e-10  Score=85.39  Aligned_cols=92  Identities=12%  Similarity=0.050  Sum_probs=72.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ...|++.+++.++++++.+.+.|++.|+.+. |.+|+|+|++++.              ++.++++.|+ ++||.+.||+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~~i~~~~~~--------------~~~~~~~~l~-~~gv~v~~g~  330 (359)
T PRK03158        267 DQAFLKECVEKNAEGLEQYYAFCKEYGLFYY-PSQTNFIFVDTGR--------------DANELFEALL-KKGYIVRSGA  330 (359)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCeeC-CCcCcEEEEECCC--------------CHHHHHHHHH-HCCeEEeeCC
Confidence            3578999999999999999999988777765 5567899998852              3667888875 7899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      .|+.       ++++||+|+. +++++..++.|.++
T Consensus       331 ~f~~-------~~~iRi~~~~-~~~~~~l~~al~~~  358 (359)
T PRK03158        331 ALGF-------PTGVRITIGL-KEQNDKIIELLKEL  358 (359)
T ss_pred             CCCC-------CCeEEEecCC-HHHHHHHHHHHHHh
Confidence            9952       4799999996 44456666666654

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.23  E-value=2.3e-10  Score=83.90  Aligned_cols=88  Identities=11%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..|.+.+++.|+++++.+.+.|++++ +++ .|.+|+|+|++++.               ..+|+++|. ++||.+.||+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~f~~~~~~~---------------~~~l~~~l~-~~gi~v~pg~  302 (330)
T TIGR01140       240 TAWQAATRARLAAERARLAALLARLGGLEV-VGGTALFLLVRTPD---------------AAALHEALA-RRGILIRDFD  302 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCceE-CCCCCeEEEEEcCC---------------HHHHHHHHH-HCCEEEEECC
Confidence            46888999999999999999999885 555 45689999998763               457888875 6899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSI  117 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~  117 (126)
                      .|...     +.+++|++++++.+. +..++.
T Consensus       303 ~f~~~-----~~~~iRi~~~~~~~~-~~~~~~  328 (330)
T TIGR01140       303 NFPGL-----DPRYLRFALPTDEEN-DRLEEA  328 (330)
T ss_pred             CCCCC-----CCCEEEEEecCHHHH-HHHHHh
Confidence            99532     467999999985443 444443

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.21  E-value=1.5e-10  Score=87.06  Aligned_cols=84  Identities=13%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+++++++.|+++|+.+.+.|++++    +.+..|+||||+|++++                 .+++.+|++++||.++|
T Consensus       314 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------------~~~~~~L~~~~~v~v~p  376 (404)
T PTZ00376        314 SELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT-----------------KEQVERLIEKYHIYLLD  376 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC-----------------HHHHHHHHHhCCEeecC
Confidence            3467888999999999999999874    45668999999999764                 25778888788999988


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |             +  |++|+. +.+.++.++++|.+++.
T Consensus       377 ~-------------~--Ris~~~~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        377 N-------------G--RISVAGLTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             C-------------C--eEEEeccCHHhHHHHHHHHHHHHh
Confidence            6             1  999984 88999999999998764

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.20  E-value=5.7e-10  Score=82.59  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++++++.++++++.+.+.|++.|+.+. |.+|+|+|++++..   .         ++.++++.|. ++||.+.|+..
T Consensus       271 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~g~~~~i~~~~~---~---------~~~~~~~~L~-~~gI~v~~~~~  336 (367)
T PRK02731        271 DAFVEKSRALNAEGMAWLTEFLAELGLEYI-PSVGNFILVDFDDG---K---------DAAEAYQALL-KRGVIVRPVAG  336 (367)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CCCceEEEEECCCC---C---------CHHHHHHHHH-HCCEEEEeCCC
Confidence            578999999999999999999998887776 55678999999642   1         4678888865 78999999988


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+.       ++++|++++. .++++..++.|.++++
T Consensus       337 ~~~-------~~~iRis~~~-~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        337 YGL-------PNALRITIGT-EEENRRFLAALKEFLA  365 (367)
T ss_pred             CCC-------CCeEEEecCC-HHHHHHHHHHHHHHHh
Confidence            852       5799999986 4556777777776653

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.18  E-value=5.1e-10  Score=83.61  Aligned_cols=91  Identities=18%  Similarity=0.142  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++++++.|+++|+.+.+.|++++.....|.+|+|+|++++..   .         ++.++++.|+ ++||.|.|++.
T Consensus       286 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~~---~---------~~~~~~~~l~-~~gI~v~~~~~  352 (380)
T PLN03026        286 PKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTSG---R---------DAKKLKEDLA-KMGVMVRHYNS  352 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCCC---C---------CHHHHHHHHH-HCCeEEEECCC
Confidence            479999999999999999999998753223788999999998742   1         3668888876 88999999865


Q ss_pred             cccCcccCCCCCeEEEEeeCCh--hHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKD--ETLREASSI  117 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~~  117 (126)
                      ++       .++++||+|+.++  +.+.+++++
T Consensus       353 ~~-------~~~~lRis~~~~~~~~~l~~al~~  378 (380)
T PLN03026        353 KE-------LKGYIRVSVGKPEHTDALMEALKQ  378 (380)
T ss_pred             CC-------CCCEEEEecCCHHHHHHHHHHHHH
Confidence            32       4679999999733  455555554

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.16  E-value=1.1e-09  Score=80.69  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++++++.++++++.+.+.|+++|+++ .|.+|+|+|++++..             ++.++++.| .++||.|.+   
T Consensus       259 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~l-~~~gi~v~~---  320 (353)
T PRK05387        259 EAYFEETRAKVIATRERLVEELEALGFEV-LPSKANFVFARHPSH-------------DAAELAAKL-RERGIIVRH---  320 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCeE-CCCcCcEEEEECCCC-------------CHHHHHHHH-HHCCEEEEE---
Confidence            46889999999999999999999888775 466788999998742             367888886 588999975   


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+..    ..++++|++|+. .++++.+++.|.+++.|
T Consensus       321 ~~~~----~~~~~iRis~~~-~~~~~~~~~~L~~~~~~  353 (353)
T PRK05387        321 FNKP----RIDQFLRITIGT-DEEMEALVDALKEILAK  353 (353)
T ss_pred             CCCC----CCCCeEEEEeCC-HHHHHHHHHHHHHHhhC
Confidence            3322    136899999985 57789999999887654

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.15  E-value=8.5e-10  Score=81.45  Aligned_cols=91  Identities=18%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..++++.++.++++|+.+.+.|+++ |+.+ .|.+|+|+|++++.               +.+++..| .++||.|.||+
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~l-~~~gI~v~~~~  325 (356)
T PRK04870        263 VDVLDAQAAQLRAERTRLAAALAALPGVTV-FPSAANFILVRVPD---------------AAAVFDGL-KTRGVLVKNLS  325 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCCCCeEEEEECCC---------------HHHHHHHH-HHCCEEEEECC
Confidence            3578899999999999999999887 7766 46677799998862               44677765 68999999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      .|+..     .++++|++|+++ ++.+..++.|.+
T Consensus       326 ~f~~~-----~~~~iRis~~~~-~~~~~l~~al~~  354 (356)
T PRK04870        326 GMHPL-----LANCLRVTVGTP-EENAQFLAALKA  354 (356)
T ss_pred             CCCCC-----CCCeEEEeCCCH-HHHHHHHHHHHH
Confidence            99642     468999999973 333455554443

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.15  E-value=8e-10  Score=82.29  Aligned_cols=95  Identities=16%  Similarity=0.060  Sum_probs=72.9

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788            2 TTAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         2 ~~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      ++.+.+.|++.+++.+++ |+.+.+.|+++ ++.+ .|+||+|+|++++..   .         ++.+++..| .++||.
T Consensus       276 ~l~~~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~---~---------~~~~~~~~l-~~~gi~  340 (374)
T PRK02610        276 ALEHRQELLAAIPEILQE-RDRLYQALQELPQLRV-WPSAANFLYLRLSQD---A---------ALAALHQAL-KAQGTL  340 (374)
T ss_pred             HhcCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcEe-CCCcceEEEEeCCCC---C---------CHHHHHHHH-HHCCEE
Confidence            355667788888888776 67788999876 6664 589999999999753   1         366788875 588999


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |.++            ++++||+|+.+ +++++++++|.+++++
T Consensus       341 v~~~------------~~~lRls~~~~-~~~~~~l~~l~~~l~~  371 (374)
T PRK02610        341 VRHT------------GGGLRITIGTP-EENQRTLERLQAALTQ  371 (374)
T ss_pred             EEeC------------CCeEEEeCCCH-HHHHHHHHHHHHHHhh
Confidence            8641            36899999974 4579999999988753

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.14  E-value=9e-10  Score=81.31  Aligned_cols=92  Identities=21%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+|++++++.++++|+.+.+.|.   +.+ .|.+|+|+|++++..             ++.++++.|. ++||.+.||..
T Consensus       269 ~~~~~~~~~~~~~~r~~l~~~l~---~~~-~~~~~~~i~~~~~~~-------------~~~~~~~~l~-~~gv~v~~~~~  330 (361)
T PRK00950        269 KEYIEKSIEHGIKSREYLYNELP---FKV-YPSEANFVLVDVTPM-------------TAKEFCEELL-KRGVIVRDCTS  330 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC---eeE-CCCcceEEEEECCCC-------------CHHHHHHHHH-HCCEEEeeCCc
Confidence            46899999999999999888875   444 467889999999531             3678999875 77999999998


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+..     +++++|++|+. .++++..++.|.+++
T Consensus       331 f~~~-----~~~~lRis~~~-~~~~~~l~~~L~~il  360 (361)
T PRK00950        331 FRGL-----GDYYIRVSIGT-FEENERFLEILKEIV  360 (361)
T ss_pred             cCCC-----CCCeEEEECCC-HHHHHHHHHHHHHHh
Confidence            8632     46899999995 456788888877654

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.13  E-value=1.2e-09  Score=81.19  Aligned_cols=90  Identities=18%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .++.+.++.++++|+.+.+.|+++ ++....|.+|+|+|++++.               ..++.+.+ .++||.|.||+.
T Consensus       269 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~---------------~~~~~~~l-~~~gI~v~~~~~  332 (364)
T PRK04781        269 AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDD---------------AEAAFQAL-LAAGVVVRDQRA  332 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC---------------HHHHHHHH-HHCCeEEeeCCC
Confidence            456666668899999999999887 6654568889999999862               44667775 589999999987


Q ss_pred             cccCcccCCCCCeEEEEeeCCh--hHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKD--ETLREASSILQ  119 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~~l~  119 (126)
                      |..      .++|+|++|+.+.  +.+.++++.+.
T Consensus       333 ~~~------~~~~~Ris~~~~~~~~~l~~al~~~~  361 (364)
T PRK04781        333 APR------LSDALRITLGTPEQNDRVLAALQRTQ  361 (364)
T ss_pred             CCC------CCCeEEEeCCCHHHHHHHHHHHHHHH
Confidence            742      3679999999833  34555555443

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.09  E-value=2.1e-09  Score=79.53  Aligned_cols=91  Identities=13%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      .+.+++.+++|++++.+.+++  +.+.++.+| |+|++++..             ++.+++..++.++||.+.||+.|..
T Consensus       252 ~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------------~~~~~~~~ll~~~gV~v~~~~~f~~  315 (346)
T TIGR03576       252 LSRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------------KLIEIGLDLLRNYGIITITAVGMPG  315 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------------CHHHHHHHHHHhCCEEEeCCcccCC
Confidence            367789999999999888874  455555666 899998741             2456777788899999999998832


Q ss_pred             CcccCCCCCeEEEEeeCChh---HHHHHHHHHHHhh
Q psy788           90 DEHKHLGENLIRYCFFKKDE---TLREASSILQTWR  122 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~~~e---~i~~~~~~l~~~~  122 (126)
                            .++|+|++++.+++   +++..++.|.+.+
T Consensus       316 ------~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       316 ------ASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             ------CCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence                  36899999998664   5677777776654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.08  E-value=2.3e-09  Score=79.33  Aligned_cols=102  Identities=22%  Similarity=0.256  Sum_probs=70.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-C-----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-G-----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g-----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV   79 (126)
                      ...|.++-++.++-+.+.+.+.|++. +     .+++.|.||||++++....             ....+.+ |.+++||
T Consensus       305 v~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G-------------~AkrvV~-lakeAGV  370 (425)
T PF12897_consen  305 VRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG-------------TAKRVVE-LAKEAGV  370 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT--------------HHHHHH-HHHHTTE
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC-------------hHHHHHH-HHHHhCc
Confidence            35789999999999999999999864 3     5789999999999999863             3555555 5789999


Q ss_pred             eEeC-CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           80 QGIP-PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        80 ~v~p-g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .+.| |+.|--..+  +....|||+-+. +.++++.|++.+...++
T Consensus       371 ~LT~AGAtfPyg~D--P~D~nIRiAPS~P~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  371 ALTPAGATFPYGKD--PRDSNIRIAPSYPSLEELETAMDVFATCVK  414 (425)
T ss_dssp             E---TTTTSGGG----TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred             eeCCCCCCCCCCCC--CCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            9999 777753221  346889999997 88999999998876544

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.06  E-value=2.6e-09  Score=78.41  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .|+.++++.++++++.+.+.|+++ |+++ .|.+|+|+|++++.              ++.+++..|. ++||.+.||+.
T Consensus       257 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~g~~~~~~~~~--------------~~~~~~~~L~-~~gI~v~~g~~  320 (346)
T TIGR01141       257 DFIEKTVEEINAERERLYDGLKKLPGLEV-YPSDANFVLIRFPR--------------DADALFEALL-EKGIIVRDLNS  320 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCEE-CCCcCCEEEEecCC--------------CHHHHHHHHH-HCCeEEEeCCC
Confidence            388999999999999999999988 7775 45578899999874              2567888865 78999999998


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSIL  118 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l  118 (126)
                      |+.      ..+++|+++++ +++++..++.|
T Consensus       321 f~~------~~~~iRls~~~-~~~i~~~~~~l  345 (346)
T TIGR01141       321 YPG------LPNCLRITVGT-REENDRFLAAL  345 (346)
T ss_pred             cCC------CCCeEEEecCC-HHHHHHHHHHh
Confidence            853      26899999984 56677777655

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>KOG0258|consensus

Probab=99.06  E-value=1.1e-09  Score=81.04  Aligned_cols=105  Identities=15%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +.+-..+++|...+.+.+++. |++|.+|+|+||++..+.-+.+.+..+--.....|.-++..|+...||+++|||.||+
T Consensus       362 d~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ  441 (475)
T KOG0258|consen  362 DGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQ  441 (475)
T ss_pred             HhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCC
Confidence            455667788888999999988 8999999999999988764322111000011224666788999999999999999998


Q ss_pred             CcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           90 DEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      .+    ++-+||.+|-.+.  + +-++++.++-
T Consensus       442 ~~----GtyH~R~TiLp~~--~-~~i~~~~~fH  467 (475)
T KOG0258|consen  442 KE----GTYHFRTTILPPG--L-EIIEKFKKFH  467 (475)
T ss_pred             CC----ceeEEEEeecCch--h-HHHHHHHHHH
Confidence            63    7889999998744  3 5566665543

>PRK09105 putative aminotransferase; Provisional

Probab=99.03  E-value=7e-09  Score=77.27  Aligned_cols=91  Identities=15%  Similarity=0.017  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++.+++.|+++|+.+.+.|+++|+++.+|+|+|| |++++.              ++.++++.|+ ++||.+  |+.
T Consensus       278 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~f~-~~~~~~--------------~~~~l~~~L~-~~gI~v--~~~  339 (370)
T PRK09105        278 PKLVPQRRAENAAVREDTIAWLKKKGYKCTPSQANCF-MVDVKR--------------PAKAVADAMA-KQGVFI--GRS  339 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCcEE-EEeCCC--------------CHHHHHHHHH-HCCcEE--ecC
Confidence            5799999999999999999999988888888999977 577652              3668889876 669998  455


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |..      .++|+|++++. +++++..++.|.+++
T Consensus       340 ~~~------~~~~~Ris~~~-~~~~~~l~~al~~~~  368 (370)
T PRK09105        340 WPI------WPNWVRVTVGS-EEEMAAFRSAFAKVM  368 (370)
T ss_pred             CCC------CCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence            632      36899999997 344556666665543

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=98.96  E-value=2.1e-08  Score=74.59  Aligned_cols=96  Identities=18%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg   84 (126)
                      +..|++++++.++++|+.+.+.|++.|+.+ .|.+|+|+|++++...   .        ...++.+.|. ++||.+. ||
T Consensus       268 ~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~-~p~~~~f~~~~~~~~~---~--------~a~~l~~~l~-~~Gi~v~~p~  334 (369)
T PRK08153        268 DQAYLAEVVGKIAAARDRIAAIARANGLTP-LPSATNFVAIDCGRDG---A--------FARAVLDGLI-ARDIFVRMPG  334 (369)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-CCCcCcEEEEECCCCc---c--------cHHHHHHHHH-HCCeEEeeCC
Confidence            357899999999999999999998777764 4789999999986321   1        2567888865 7899994 66


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ...        +++++|++++. +++++..++.|.+++.
T Consensus       335 ~~~--------~~~~iRis~~~-~~~~~~~~~al~~~~~  364 (369)
T PRK08153        335 VAP--------LDRCIRVSCGP-DEELDLFAEALPEALE  364 (369)
T ss_pred             CCC--------CCCeEEEecCC-HHHHHHHHHHHHHHHH
Confidence            421        35799999995 5566777777766654

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=98.95  E-value=1.5e-08  Score=74.86  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .++.+.++.++++|+.+.+.|.+. |+.+. |.+|+|+|++++.               +.++++.|. ++||.|.|++.
T Consensus       259 ~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~---------------~~~~~~~l~-~~gV~v~~~~~  321 (351)
T PRK14807        259 GVLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKD---------------ADYVYQGLL-ERGILVRDFSK  321 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCC---------------HHHHHHHHH-HCCEEEEECCC
Confidence            467778888999999999999876 77765 5567799998862               456777764 78999988654


Q ss_pred             cccCcccCCCCCeEEEEeeCCh--hHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKD--ETLREASS  116 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~  116 (126)
                      +..      .++++|++|+.+.  +.+.++++
T Consensus       322 ~~~------~~~~iRis~~~~~~~~~l~~~l~  347 (351)
T PRK14807        322 VEG------LEGALRITVSSCEANDYLINGLK  347 (351)
T ss_pred             CCC------CCCeEEEEcCCHHHHHHHHHHHH
Confidence            321      3679999999732  33444443

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=98.85  E-value=8.5e-08  Score=70.72  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=65.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +..|.+.+++.|+++|+.+.+.|+++|+++.  .+++|+|++++.               ..++...|. ++||.|.+  
T Consensus       243 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~f~~~~~~~---------------~~~l~~~l~-~~GI~vr~--  302 (339)
T PRK06959        243 DAAWQAAMRERLAADGARLAALLRAHGFAVH--ATPLFSWTDDPR---------------AAALHAALA-RRGIWTRY--  302 (339)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc--CcceEEEEeCCC---------------HHHHHHHHH-hCCeEEEE--
Confidence            3578999999999999999999998877654  368999998752               456778764 78999974  


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                       |+       ..+++|++++.+.++++..++.|.++
T Consensus       303 -~~-------~~~~lRisi~~~~~e~~~l~~al~~~  330 (339)
T PRK06959        303 -FA-------PPPSVRFGLPADEAEWQRLEDALAEC  330 (339)
T ss_pred             -CC-------CCCeEEEECCCCHHHHHHHHHHHHHH
Confidence             42       24699999965444555555555443

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=98.85  E-value=7.4e-08  Score=71.74  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      .++++.|+++++.+.+.|.+.++++..|.++++.+ .++..   .         ++.+|++.|+ ++||.+.|+. |...
T Consensus       296 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~---~---------~~~~~~~~L~-~~gI~v~~~~-~~~~  360 (397)
T PRK06939        296 DELRDRLWENARYFREGMTAAGFTLGPGEHPIIPV-MLGDA---K---------LAQEFADRLL-EEGVYVIGFS-FPVV  360 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCEEEE-EECCH---H---------HHHHHHHHHH-HCCceEeeeC-CCCC
Confidence            57889999999999999988887777778887644 34421   1         3668889876 5599999754 5322


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .   .+.+++|++++.  +++++++++++|.+++++
T Consensus       361 ~---~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        361 P---KGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             C---CCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            1   235789999863  889999999999988765

>PLN02822 serine palmitoyltransferase

Probab=98.84  E-value=9.2e-08  Score=73.72  Aligned_cols=106  Identities=13%  Similarity=0.017  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC--CCc
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP--SAF   87 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg--~~f   87 (126)
                      ..+++.|+++++.+.+.|++. |+++..|.+++++++.++.......    .+.....++++.|+.++||.+.|+  +.|
T Consensus       367 ~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~----~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~  442 (481)
T PLN02822        367 PSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAK----EDLSLLEHIADRMLKEDSVLVVVSKRSTL  442 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCccccc----chHHHHHHHHHHHHhcCCEEEEeeCCCCc
Confidence            568899999999999999987 8888888999999999974200000    000113579999877889999987  445


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...    ..+.++|++++  .++++|++++++|.+++++
T Consensus       443 ~~~----~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        443 DKC----RLPVGIRLFVSAGHTESDILKASESLKRVAAS  477 (481)
T ss_pred             CCC----CCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            322    13568999877  4899999999999887764

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=98.84  E-value=8.2e-08  Score=71.01  Aligned_cols=89  Identities=15%  Similarity=0.074  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+|+.+.++.++++|+.+.+.|+++ ++....|.+|.|+|++++.               +.++.+.|+ ++||.|.++.
T Consensus       261 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~---------------~~~l~~~L~-~~gi~vr~~~  324 (351)
T PRK01688        261 IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTA---------------SSAVFKSLW-DQGIILRDQN  324 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC---------------HHHHHHHHH-HCCeEEEECC
Confidence            3688889999999999999999887 5654567788899998852               557888875 8899999876


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSIL  118 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l  118 (126)
                      .|..      .++|+|++++. .++++..++.|
T Consensus       325 ~~~~------~~~~iRis~~~-~~e~~~l~~al  350 (351)
T PRK01688        325 KQPG------LSNCLRITIGT-REECQRVIDAL  350 (351)
T ss_pred             CcCC------CCCeEEEeCCC-HHHHHHHHHhh
Confidence            6532      36799999996 34445554443

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=98.83  E-value=6.2e-08  Score=71.06  Aligned_cols=91  Identities=11%  Similarity=-0.008  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      ...+++.++++++.+.+.|++.++++. |.+|.++|+.++..   .         ++.+|.+.|. ++||.+.|+..|+.
T Consensus       267 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~---~---------~~~~~~~~l~-~~gI~v~~~~~~~~  332 (360)
T TIGR00858       267 EPWRREKLLALIARLRAGLEALGFTLM-PSCTPIVPVIIGDN---A---------SALALAEELQ-QQGIFVGAIRPPTV  332 (360)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCccC-CCCCCEEEEEeCCH---H---------HHHHHHHHHH-HCCeeEeeeCCCCC
Confidence            356789999999999999988777665 45677999998742   1         3668888875 78999999877653


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSIL  118 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l  118 (126)
                      .    .+.+++|++++.  ++++++.++++|
T Consensus       333 ~----~~~~~iRis~~~~~~~~~i~~~l~~l  359 (360)
T TIGR00858       333 P----AGTSRLRLTLSAAHTPGDIDRLAEAL  359 (360)
T ss_pred             C----CCCceEEEEEcCCCCHHHHHHHHHhh
Confidence            2    245799999985  888899988876

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=98.82  E-value=1.4e-07  Score=68.61  Aligned_cols=94  Identities=31%  Similarity=0.447  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGM-VPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~-~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+.+++++.++++++.+.+.|.+.+. .+..|.+|+|+|+.++..             .+.++...++.+.||.+.++..
T Consensus       255 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~i~~~~~  321 (350)
T cd00609         255 EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG-------------DDEEFLERLLLEAGVVVRPGSA  321 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-------------ChHHHHHHHHHhCCEEEecccc
Confidence            68899999999999999999998743 336789999999998753             1334444556788999999988


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQ  119 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~  119 (126)
                      |...     .+.++|++++...++++..++.|.
T Consensus       322 ~~~~-----~~~~iRi~~~~~~~~i~~~~~al~  349 (350)
T cd00609         322 FGEG-----GEGFVRLSFATPEEELEEALERLA  349 (350)
T ss_pred             cccC-----CCCeEEEEeeCCHHHHHHHHHHhh
Confidence            8642     468999999987888888888774

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02483 serine palmitoyltransferase

Probab=98.81  E-value=1.3e-07  Score=73.06  Aligned_cols=99  Identities=13%  Similarity=0.067  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+..++++.|+++++++.+.|+++|+.+..+.++..+|+-+....            +..+|++.|+ ++||.+.| ..|
T Consensus       365 ~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~------------~~~~~~~~Ll-~~GI~v~~-~~f  430 (489)
T PLN02483        365 NRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA------------KIPAFSRECL-KQNVAVVV-VGF  430 (489)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCHH------------HHHHHHHHHH-HCCcEEee-eCC
Confidence            455667889999999999999988888777777778887765321            2457888876 67999998 566


Q ss_pred             ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ....   ...+++|++++.  ++++|++++++|.+++.
T Consensus       431 p~~p---~~~~~vRi~isa~~t~edId~~l~~L~~~~~  465 (489)
T PLN02483        431 PATP---LLLARARICISASHSREDLIKALEVISEVGD  465 (489)
T ss_pred             CCCC---CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            4321   235789999984  88999999999988754

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=98.79  E-value=1.7e-07  Score=69.57  Aligned_cols=88  Identities=10%  Similarity=0.038  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      ++.+.++.++++++.+.+.|+++|+.+..|+|+|++|.+++               ++.++.+.|. ++||.+.|+   +
T Consensus       276 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~-~~Gv~v~~~---~  336 (368)
T PRK03317        276 ELLASVAALRAERDRVVAWLRELGLRVAPSDANFVLFGRFA---------------DRHAVWQGLL-DRGVLIRDV---G  336 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEEEEeccC---------------CHHHHHHHHH-HCCEEEEeC---C
Confidence            34455677899999999999888888889999999987653               2557777764 789999873   2


Q ss_pred             cCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                             .++++|++++. .++++..++.|.++++
T Consensus       337 -------~~~~iRi~~~~-~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        337 -------IPGWLRVTIGT-PEENDAFLAALAEVLA  363 (368)
T ss_pred             -------CCCeEEEecCC-HHHHHHHHHHHHHHHH
Confidence                   24799999986 4456777777766654

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=98.76  E-value=2.5e-07  Score=68.43  Aligned_cols=89  Identities=13%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+++++.++.++++|+.+.+.|++++ +++.+|+ |.|+|++++.               +.++.+.| .++||.|.+++
T Consensus       262 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-g~f~~~~~~~---------------~~~~~~~l-~~~gv~v~~~~  324 (354)
T PRK04635        262 LARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN-GNYVLAKFDD---------------VDAVFKAL-WDAGIVARAYK  324 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC-CcEEEEECCC---------------HHHHHHHH-HHCCEEEEECC
Confidence            35678888999999999999999884 7777775 5689998862               44676665 68899998754


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      .+.       .++++|++|+. .++++..++.|.+
T Consensus       325 ~~~-------~~~~lRis~~~-~e~~~~l~~al~~  351 (354)
T PRK04635        325 DPR-------LANCIRFSFSN-RAETDKLIGLIRN  351 (354)
T ss_pred             CCC-------CCCeEEEEeCC-HHHHHHHHHHHHH
Confidence            321       36799999986 4555666666643

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=98.75  E-value=1.3e-07  Score=70.03  Aligned_cols=94  Identities=10%  Similarity=-0.053  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ..+++.+.++++.+.+.|++.++++..|.|+ |+|+.++..   .         ++.++.+.|. ++||.+.|+..+...
T Consensus       290 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~---~---------~~~~~~~~l~-~~gI~v~~~~~~~~~  355 (385)
T PRK05958        290 PERRERLAALIARLRAGLRALGFQLMDSQSA-IQPLIVGDN---E---------RALALAAALQ-EQGFWVGAIRPPTVP  355 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-EEEEEeCCH---H---------HHHHHHHHHH-HCCceEecccCCCCC
Confidence            5678899999999999998878877777666 667877642   1         3667888875 789999996655322


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                          .+++++|++++.  +++++++++++|.+++
T Consensus       356 ----~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        356 ----AGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             ----CCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence                145799999983  8899999999997653

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=98.73  E-value=3.7e-07  Score=67.00  Aligned_cols=83  Identities=17%  Similarity=0.228  Sum_probs=59.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcc--eEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGG--YFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ..|.+.+++.|+++|+.+.+.|+++++.   |.||  +|+|+..+               ++.++++.| .++||.|.+ 
T Consensus       238 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~~~~~~f~~~~~~---------------~~~~~~~~l-~~~gi~v~~-  297 (330)
T PRK05664        238 TPWQRRQRERLLAASQRLAALLRRHGLT---PAGGCALFQWVRTE---------------DAAALHEFL-ARRGILTRL-  297 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCCCc---ccCCcceEEEEecC---------------CHHHHHHHH-HHCCeEEEE-
Confidence            3678899999999999999999987653   5566  67777653               256787876 588999974 


Q ss_pred             CCcccCcccCCCCCeEEEEeeCCh---hHHHHHHHHH
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKD---ETLREASSIL  118 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~---e~i~~~~~~l  118 (126)
                        |+ .      .+++||+++.+.   +.+.++++.+
T Consensus       298 --f~-~------~~~iRis~~~~~~~~~~l~~al~~~  325 (330)
T PRK05664        298 --FE-Q------PASLRFGLPADEADWARLDQALLAY  325 (330)
T ss_pred             --CC-C------CCeEEEECCCCHHHHHHHHHHHHHH
Confidence              53 2      469999999533   3444455444

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=98.70  E-value=3.9e-07  Score=67.92  Aligned_cols=87  Identities=11%  Similarity=0.022  Sum_probs=66.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ...|++.+++.++++++.+.+.++.+|+++.+|+|. |+|++++.               ..++...|+ ++||.|.|  
T Consensus       267 ~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~~n-f~~~~~~~---------------~~~~~~~l~-~~GI~Vr~--  327 (366)
T PRK01533        267 DDEFIEEIVRVNTEGLRQYESFCKENEIPFYQSQTN-FIFLPVEN---------------GGEIYEACA-HAGFIIRP--  327 (366)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcCc-EEEEeCCC---------------HHHHHHHHH-HCCcEEcc--
Confidence            367999999999999999999998888888888655 89998852               446778765 89999998  


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                       |         ++++||+++..+ +.+..++.|.+++
T Consensus       328 -~---------~~~iRis~~~~~-~~~~l~~al~~~~  353 (366)
T PRK01533        328 -F---------PNGVRITVGTRE-QNEGVISVLQQHF  353 (366)
T ss_pred             -C---------CCceEEeCCCHH-HHHHHHHHHHHHH
Confidence             3         157999999843 3355555554443

>PRK08354 putative aminotransferase; Provisional

Probab=98.67  E-value=3e-07  Score=66.93  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +++++.++.+.++++.+.+.+      ..+|+|+||+ ++++               ++.++++.| .++||.|.||+.|
T Consensus       227 ~~~~~~~~~~~~~~~~l~~~l------~~~~~~~~~~-~~~~---------------~~~~~~~~l-~~~gv~v~~g~~f  283 (311)
T PRK08354        227 EHLRKTMPLIWREKERFEKAL------YVKSDANFFI-KDVG---------------DAEKFVEFL-KRNGILVRDCTSF  283 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc------CCCCCCcEEE-EECC---------------CHHHHHHHH-HHCCeEEEecccC
Confidence            455555666666555544433      2367888666 5543               255788876 5889999999999


Q ss_pred             ccCcccCCCCCeEEEEeeCC--hhHHHHHHHHH
Q psy788           88 YSDEHKHLGENLIRYCFFKK--DETLREASSIL  118 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~--~e~i~~~~~~l  118 (126)
                      +.       ++|+||+|+.+  .+.+..+++.+
T Consensus       284 ~~-------~~~iRi~~~~~~~~~~l~~al~~~  309 (311)
T PRK08354        284 GL-------PGYIRFSVRDREENEKLIRALREW  309 (311)
T ss_pred             CC-------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            52       47999999973  35566666554

>PRK03321 putative aminotransferase; Provisional

Probab=98.66  E-value=5.9e-07  Score=66.21  Aligned_cols=90  Identities=18%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ...+.|.+.+++.+ ++|+.+.+.|.+.|+.+. |.+|+|+|++++.              ++.++++.| .++||.+.|
T Consensus       260 ~~~~~~~~~~~~~~-~~r~~~~~~L~~~~~~~~-~~~g~~i~i~l~~--------------~~~~~~~~l-~~~gI~v~~  322 (352)
T PRK03321        260 AAEDELLERVDAVV-AERDRVRAALRAAGWTVP-PSQANFVWLPLGE--------------RTADFAAAA-AEAGVVVRP  322 (352)
T ss_pred             cCHHHHHHHHHHHH-HHHHHHHHHHHHCCCccC-CCCCCEEEEeCCC--------------CHHHHHHHH-HHCCEEEEc
Confidence            34455666565554 566788999988777654 4568899999853              256788886 589999987


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                         |+        .+++|++++. .++++..++.|.+++
T Consensus       323 ---~~--------~~~iRi~~~~-~~~~~~~~~al~~~~  349 (352)
T PRK03321        323 ---FA--------GEGVRVTIGA-PEENDAFLRAARAWR  349 (352)
T ss_pred             ---cC--------CCcEEEeeCC-HHHHHHHHHHHHHHh
Confidence               43        2459999986 444577777776654

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=98.59  E-value=9.1e-07  Score=66.27  Aligned_cols=102  Identities=12%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +..+.++.++++++.+.+.|.++|+.+. .|++++|+|++++...  .         +...+.+. +.++||.+.++...
T Consensus       276 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~--~---------~~~~~~~~-l~~~gI~v~~~~~p  343 (402)
T cd00378         276 EFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKG--I---------TGKAAEDA-LEEAGITVNKNTLP  343 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccC--C---------CHHHHHHH-HHHcCcEEcCCcCC
Confidence            5667888899999999999988887764 5789999999997432  1         23455554 57899999874432


Q ss_pred             ccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~  123 (126)
                      +... +.....++|+++..      ++++++..++.|.++++
T Consensus       344 ~~~~-~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~  384 (402)
T cd00378         344 WDPS-SPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALK  384 (402)
T ss_pred             CCCC-CCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            2210 00134689998865      37889999999988765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=98.57  E-value=1.4e-06  Score=64.23  Aligned_cols=86  Identities=16%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+|+.+.++.+.++|+.+.+.|++.|+++.+|+|+ |+|+.++..             +..++.+.| .++||.|.+   
T Consensus       248 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~-f~~~~l~~~-------------~~~~~~~~l-~~~Gi~V~~---  309 (335)
T PRK14808        248 REIFEERTKFIVEERERMKSALREMGYRITDSRGN-FVFIFMEKE-------------EKERLLEHL-RAKNIAVRS---  309 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCe-EEEEeCCCc-------------cHHHHHHHH-HHCCeEEEE---
Confidence            35777888888999999999999888888788666 779998742             256777775 588999984   


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      |         .+++|++++.+ ++.+..++.|.+
T Consensus       310 ~---------~~~~Risi~~~-~~~~~~~~~l~~  333 (335)
T PRK14808        310 F---------REGVRITIGKR-EENDMILKELEV  333 (335)
T ss_pred             C---------CCCeEEecCCH-HHHHHHHHHHHh
Confidence            3         24799999984 444566665543

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=98.54  E-value=2.1e-06  Score=62.96  Aligned_cols=94  Identities=14%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIP---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++...+++++++++++.+.|++.|+++..|   .+++++|+.++.... .         +..++.+.| .++||.+.||.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~l-~~~gi~i~~~~  324 (355)
T TIGR03301       256 GVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD-F---------DFDDFYQEL-KERGFVIYPGK  324 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc-c---------hHHHHHHHH-HHCCEEEECCc
Confidence            367778899999999999998887765332   457788998874210 1         245788875 58899999986


Q ss_pred             CcccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHh
Q psy788           86 AFYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTW  121 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~  121 (126)
                      .+.        .+++|+++. . +.++++.+++.|.++
T Consensus       325 ~~~--------~~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       325 LTL--------ADTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             ccc--------ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            542        368999985 3 889999999998765

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=98.52  E-value=2.2e-06  Score=64.56  Aligned_cols=96  Identities=10%  Similarity=-0.004  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ...++.++++++.+.+.|.+.|+++.+|+++++ .+.++..    .        +..++++.|+.++||.+.|+......
T Consensus       299 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~i~~~~~----~--------~~~~~~~~L~~~~GI~v~~~~~p~~~  365 (410)
T PRK13392        299 QTERDAHQDRVAALKAKLNANGIPVMPSPSHIV-PVMVGDP----T--------LCKAISDRLMSEHGIYIQPINYPTVP  365 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCEE-EEEeCCH----H--------HHHHHHHHHHHhCCEEEeeeCCCCCC
Confidence            456788999999999999888888878888865 3444321    0        25678888766789999997544322


Q ss_pred             cccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           91 EHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                          .+..++|+++.  .++++++..++.|.++.+
T Consensus       366 ----~~~~~lRis~~~~~t~edid~l~~aL~~~~~  396 (410)
T PRK13392        366 ----RGTERLRITPTPLHDDEDIDALVAALVAIWD  396 (410)
T ss_pred             ----CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence                24579999996  388889999999987765

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=98.52  E-value=4.2e-06  Score=61.68  Aligned_cols=94  Identities=10%  Similarity=0.030  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccC-C--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC-CeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVI-P--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV-KLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gV~v~pg~   85 (126)
                      ++.+.+.++++++.+.+.|.+.|+++.. |  .+++++|+.++..   .         +..++++.|. ++ ||.+.||.
T Consensus       257 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~L~-~~~gI~~~~g~  323 (356)
T cd06451         257 LENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEG---V---------DGDEVVRRLM-KRYNIEIAGGL  323 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCC---C---------CHHHHHHHHH-HhCCEEEeccc
Confidence            4667788888899999999887766643 2  2566778877642   1         3668888875 65 99999987


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .+.       .++++|++++.  ++++++..++.|.++++
T Consensus       324 ~~~-------~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         324 GPT-------AGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             ccc-------cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            432       35799999984  78999999999988764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=98.50  E-value=2.9e-06  Score=64.71  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC-CCCccc
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP-PSAFYS   89 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p-g~~f~~   89 (126)
                      +.++..++ +++++.+.|.+.|+++..|.||+|+|++++.....++   ... .++.+|+.+|+.+.||.++. |+....
T Consensus       291 ~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~---~~~-~~~~~la~~L~~e~gV~~~~~g~~~~~  365 (431)
T cd00617         291 DYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIP---QEQ-FPAQALAAELYLEAGVRAVELGIFSAG  365 (431)
T ss_pred             HHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCC---ccc-CcHHHHHHHHHHHcCeeEEeecceecc
Confidence            44555565 4488999999889999999999999999986321010   000 14788999999999999654 664332


Q ss_pred             -Ccc----cCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           90 -DEH----KHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        90 -~~~----~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                       +++    ..+....+||++.+   +.+.++.-.+.|..+.+
T Consensus       366 ~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~  407 (431)
T cd00617         366 RDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE  407 (431)
T ss_pred             cCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence             211    01124789999975   66777777777766655

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK10534 L-threonine aldolase; Provisional

Probab=98.42  E-value=6.8e-06  Score=60.11  Aligned_cols=78  Identities=12%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCC
Q psy788           18 RPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGE   97 (126)
Q Consensus        18 ~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~   97 (126)
                      .++|+.+.+.|.++|+++.+| ++.|+|++++..             +..++.+. +.++||.+.||.            
T Consensus       253 ~~~r~~l~~~L~~~g~~~~~~-~~nfv~~~~~~~-------------~~~~~~~~-l~~~gi~v~~~~------------  305 (333)
T PRK10534        253 HDNAAWLAEQLREAGADVMRQ-DTNMLFVRVGEE-------------QAAALGEY-MRERNVLINASP------------  305 (333)
T ss_pred             HHHHHHHHHHHHhCCCccCCC-CceEEEEECCch-------------hHHHHHHH-HHHcCeeecCCc------------
Confidence            345678999998888888777 588999998731             25567665 568899998863            


Q ss_pred             CeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           98 NLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        98 ~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                       ++|++++  .+++++++.+++|.+++.
T Consensus       306 -~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        306 -IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             -eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence             3566664  378999999999987764

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=98.41  E-value=8.4e-06  Score=60.86  Aligned_cols=96  Identities=13%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      .+++++.++++++.+.+.|.+.|+.+..|.++ ++.+.++..   .         ++.+|++.|. ++||.+. +..|..
T Consensus       291 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~~~~~---~---------~~~~l~~~L~-~~gI~v~-~~~~~~  355 (393)
T TIGR01822       291 SNELRDRLWANTRYFRERMEAAGFDIKPADHP-IIPVMLYDA---V---------LAQRFARRLL-EEGIYVT-GFFYPV  355 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCH---H---------HHHHHHHHHH-HCCeeEe-eeCCCC
Confidence            45788999999999999998777777666665 344444421   1         3567888876 6699998 555532


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..   .+...+|++++.  +++++++++++|.++.+
T Consensus       356 ~~---~~~~~iRis~~~~~t~edi~~~~~~l~~~~~  388 (393)
T TIGR01822       356 VP---KGQARIRVQISAAHTEEQLDRAVEAFTRIGR  388 (393)
T ss_pred             CC---CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            21   134579988874  78999999999988765

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=98.35  E-value=1.5e-05  Score=58.34  Aligned_cols=94  Identities=11%  Similarity=0.009  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ..++++++++++.+.+.|.+.|+++..+.++++.++.++..   .         +..+++..|. ++||.+.|+. |...
T Consensus       253 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~L~-~~gI~~~~~~-~~~~  318 (349)
T cd06454         253 PERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP---A---------KAVAFSDALL-ERGIYVQAIR-YPTV  318 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh---H---------HHHHHHHHHH-hCCceEEEec-CCcc
Confidence            56788999999999999988777776666666555544321   1         3567888876 6699999864 3221


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                      .   .+.+++|++++.  +++++++.+++|.++
T Consensus       319 ~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         319 P---RGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             C---CCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            1   135799999984  889999999998753

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=98.33  E-value=1.6e-05  Score=59.18  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788           12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE   91 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~   91 (126)
                      ++.++++++++++.+.|.+.|+++..|++.+ +++.++..   .         ++.+|++.|+ ++||.+ ++..|+...
T Consensus       285 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~~~~~---~---------~~~~~~~~L~-~~gi~v-~~~~~~~~~  349 (385)
T TIGR01825       285 ELMERLWDNTRFFKAGLGKLGYDTGGSETPI-TPVVIGDE---K---------AAQEFSRRLF-DEGIFA-QSIVFPTVP  349 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCE-EEEEECCH---H---------HHHHHHHHHH-HCCcEE-cccCCCCCC
Confidence            4667788899999999988888888888774 44445421   0         3567888876 559987 555565321


Q ss_pred             ccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           92 HKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        92 ~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                         .+.+++|++.+  .+++++++++++|.++++
T Consensus       350 ---~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~  380 (385)
T TIGR01825       350 ---RGTARIRNIPTAEHTKDDLDQALDAYEKVGK  380 (385)
T ss_pred             ---CCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence               24578999875  489999999999998875

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=98.32  E-value=1e-05  Score=61.40  Aligned_cols=104  Identities=10%  Similarity=0.045  Sum_probs=68.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+++++++++..+..++.+.+...+.+. +..+.| |+++|+.+....   +. ...+.....++...+. +.||.+.|+
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~v~g~G~~~~l~l~~~~---~~-~~p~~~~~~~l~~~~~-~~Gv~~~~~  390 (425)
T PRK08088        317 QENLLQKANALGEKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDG---DH-SKPNAKLTAQIVARAR-DKGLILLSC  390 (425)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEeccceEEEEEEecCC---CC-CCCCHHHHHHHHHHHH-hCCCEEecC
Confidence            3468888888877777766666555532 222223 889999995321   00 0000012557777764 789998875


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      ..|         .+.+||+++.  ++++|++++++|.+++.+
T Consensus       391 ~~~---------~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~  423 (425)
T PRK08088        391 GPY---------YNVLRILVPLTIEDAQIRQGLEIIAQCFDE  423 (425)
T ss_pred             CCC---------CCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence            333         3679999994  789999999999988763

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=98.31  E-value=7.4e-06  Score=60.32  Aligned_cols=81  Identities=14%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +|+.+.++.+.++|+.+.+.|.+.    ..|.+|+|+|++++                   +.+.|+ ++||.|.+++..
T Consensus       251 ~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~~~~-------------------~~~~l~-~~gi~v~~~~~~  306 (337)
T PRK03967        251 DLIEERIDYIIKERERVRRELGEY----AYPSDANFLLLKLD-------------------AYDYLL-ENGIVVRKLSGR  306 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC----cCCCCCcEEEEhHH-------------------HHHHHH-HCCEEEEeCCCC
Confidence            366666666677788888888753    35789999998653                   335554 679999986421


Q ss_pred             ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                              .++++|++++.  +.+.+..+++++.+
T Consensus       307 --------~~~~~Ri~~~~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        307 --------LEGHIRVTVGKREENDEFIKALKEIKE  333 (337)
T ss_pred             --------CCCeEEEecCCHHHHHHHHHHHHHHHH
Confidence                    35799999997  34556666666543

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=98.27  E-value=1.3e-05  Score=60.35  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+++.|+++++.+.+.|++.+    +....+.+|+++|+.++....  .        ++.+|+..|+ ++||.+.|+   
T Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~--~--------~~~~~~~~l~-~~Gv~v~~~---  369 (403)
T PRK05093        304 EVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK--G--------RARDFLNAAA-EEGVMVLVA---  369 (403)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch--h--------HHHHHHHHHH-HCCeEEecC---
Confidence            467889999999999998762    223456789999999864210  0        3567888875 779999873   


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                              +.+++|++++  .+++++++++++|.+++.+
T Consensus       370 --------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~  400 (403)
T PRK05093        370 --------GPDVLRFAPSLVIEEADIDEGLARFEKAVAK  400 (403)
T ss_pred             --------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                    2468999655  4889999999999988754

>PLN02721 threonine aldolase

Probab=98.22  E-value=4.3e-05  Score=56.08  Aligned_cols=91  Identities=16%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCc--ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMV--PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~--~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +++..+++. .++++.+.+.|+++ ++.  +..|.++ |+|++++... ..         +...+++.|. ++||.+.|+
T Consensus       255 ~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~---------~~~~~~~~L~-~~gi~v~~~  321 (353)
T PLN02721        255 ENVPKLEDD-HKKAKLLAEGLNQIKGLRVNVAAVETN-IVYFDITDGS-RI---------TAEKLCKSLE-EHGVLLMPG  321 (353)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhCCCcEEecCCccce-EEEEEccCCc-cc---------cHHHHHHHHH-hCCcEEecC
Confidence            445555544 45678899999887 663  4455555 6999987420 01         3567888875 899999996


Q ss_pred             CCcccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTWR  122 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~~  122 (126)
                      .           .+++|++++ . +++++++.++.|.+++
T Consensus       322 ~-----------~~~lR~~~~~~~~~~~i~~~~~~l~~~~  350 (353)
T PLN02721        322 N-----------SSRIRVVTHHQISDSDVQYTLSCFQQAA  350 (353)
T ss_pred             C-----------CceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence            2           358999997 3 8889999999998765

>PRK09064 5-aminolevulinate synthase; Validated

Probab=98.22  E-value=4.8e-05  Score=57.25  Aligned_cols=95  Identities=15%  Similarity=0.046  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788           12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE   91 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~   91 (126)
                      ..++.++++++.+.+.|.+.|+++..+.++ ++++.++...            ...++++.|+.+.||.+.|...+... 
T Consensus       300 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-iv~i~~~~~~------------~~~~l~~~L~~~~gi~v~~~~~p~~~-  365 (407)
T PRK09064        300 EERERHQERAAKLKAALDAAGIPVMPNESH-IVPVMVGDPE------------KCKKASDMLLEEHGIYVQPINYPTVP-  365 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCHH------------HHHHHHHHHHHhCCEEEeeECCCCCC-
Confidence            346788899999999998888877666665 5566665310            35678888765679999986543221 


Q ss_pred             ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           92 HKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        92 ~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                         .+.+++|++.+.  ++++++..++.|.++++
T Consensus       366 ---~~~~~lRis~~~~~t~edi~~l~~~l~~~~~  396 (407)
T PRK09064        366 ---RGTERLRITPTPFHTDEMIDHLVEALVEVWA  396 (407)
T ss_pred             ---CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence               245789999973  88899999999988765

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=98.22  E-value=4.8e-05  Score=56.32  Aligned_cols=96  Identities=7%  Similarity=-0.012  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIP---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .++.++++++++++++.+.|++.|+.+..+   .++...|+.++... .+         +..++.+.| .++||.+.||.
T Consensus       261 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~v~~~L-~~~gi~v~~g~  329 (363)
T TIGR02326       261 GVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDP-DY---------RFADFYQRL-KEQGFVIYPGK  329 (363)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCC-CC---------CHHHHHHHH-HHCCEEEECCc
Confidence            356788999999999999998887665332   56677788876421 01         245677776 58899999997


Q ss_pred             CcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .+.        .+++|+++ +. +.++++..++.|.+++.
T Consensus       330 ~~~--------~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       330 VSQ--------VDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             CCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            552        46899996 54 88899999999987653

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=98.19  E-value=3.5e-05  Score=57.45  Aligned_cols=89  Identities=19%  Similarity=0.196  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.+++++++..+..++.+.+.+.+++.....+..|+++|++++.              +..++.+.+ .++||.+.|+  
T Consensus       284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~l-~~~Gi~v~~~--  346 (375)
T PRK04260        284 AGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTA--------------DLSQLVEAA-RDKGLIVLTA--  346 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecC--------------cHHHHHHHH-HhCCCEEecC--
Confidence            46888999999999999988887764222333489999999853              255788886 4889999774  


Q ss_pred             cccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHh
Q psy788           87 FYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTW  121 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~  121 (126)
                               +.+.+|++.. . +++++++++++|.++
T Consensus       347 ---------~~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        347 ---------GTNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             ---------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence                     1367999995 3 889999999999765

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=98.18  E-value=5.5e-05  Score=56.55  Aligned_cols=91  Identities=15%  Similarity=0.058  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ++++++++..+..++.+.+.+.+++.....+..|+|+|++++.              ++.+++..++ ++||.+.|+.  
T Consensus       302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------------~~~~~~~~l~-~~Gv~v~~~~--  364 (396)
T PRK02627        302 GLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDR--------------PAAEIVKKAL-EKGLLINVTG--  364 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecC--------------cHHHHHHHHH-HCCeEEeecC--
Confidence            3444555544444444544444332211223457899999842              3668888876 6699999852  


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                               .+++|++++  .+++++++++++|.+++++
T Consensus       365 ---------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        365 ---------DNVLRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             ---------CCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence                     357999875  4899999999999988764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=98.15  E-value=8.3e-05  Score=55.91  Aligned_cols=96  Identities=9%  Similarity=0.000  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ..+++.++++++.+.+.|++.|+++..+.|++ +.+.++..    .        ...++++.|+.+.||.+.|.......
T Consensus       298 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i-~~i~~~~~----~--------~a~~~~~~L~~~~Gi~v~~~~~p~~~  364 (402)
T TIGR01821       298 QDLRRAHQENVKRLKNLLEALGIPVIPNPSHI-VPVIIGDA----A--------LCKKVSDLLLNKHGIYVQPINYPTVP  364 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCE-EEEEeCCH----H--------HHHHHHHHHHhcCCEEEEeECCCCCC
Confidence            34566777888899999988888877777774 45555421    0        25578888765679999996533322


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                          .+..++|+++..  ++++++..++.|.++++
T Consensus       365 ----~g~~~lRis~~~~~t~edi~~~~~~l~~~~~  395 (402)
T TIGR01821       365 ----RGTERLRITPTPAHTDKMIDDLVEALLLVWD  395 (402)
T ss_pred             ----CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                245789999963  88899999999887765

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=98.13  E-value=9.5e-05  Score=55.20  Aligned_cols=97  Identities=19%  Similarity=0.153  Sum_probs=72.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +++|+++.+....+.|..+.+.|+++|+. +.+++ +=|++++++..             ....+.+.|+ ++||.|.+.
T Consensus       257 ~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~-aNFvlv~~~~~-------------~~~~l~~~L~-~~giivR~~  321 (356)
T COG0079         257 DADYLEESVERIREERERLYAALKALGLFGVFPSQ-ANFVLVRVPDA-------------EAAALAEALL-KKGILVRDC  321 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC-CcEEEEECCCc-------------cHHHHHHHHH-HCCEEEEeC
Confidence            34899999999999999999999988744 55555 55888998751             2346777764 779999997


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +. ..     ..++|+|++++++++. +.-++.|.++++.
T Consensus       322 ~~-~~-----~~~~~lRitvgt~een-~~ll~AL~~~~~~  354 (356)
T COG0079         322 SS-VG-----LLPGYLRITVGTPEEN-DRLLAALREVLKG  354 (356)
T ss_pred             CC-CC-----CCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence            65 22     2468999999996655 7777777766553

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=98.12  E-value=5.5e-05  Score=56.20  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC--Ccc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           12 TISEELRPKREILADALDKAG--MVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g--~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      .+++.++++++.+.+.|.+.+  ..+ ..+.+|.|+|++++.              +..++.+.| .++||.+.|+.   
T Consensus       290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~l-~~~Gv~v~~~~---  351 (379)
T TIGR00707       290 RLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEA--------------PCKDIVKKA-LEKGLLVNCAG---  351 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecC--------------cHHHHHHHH-HHCCcEEeeCC---
Confidence            466777788888877776642  111 123468899998863              255788885 58899999841   


Q ss_pred             cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhh
Q psy788           89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWR  122 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~  122 (126)
                              .+++|++++  .+++++++++++|.+++
T Consensus       352 --------~~~lRi~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       352 --------PKVLRFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             --------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence                    368999975  38899999999998753

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=98.11  E-value=5.8e-05  Score=57.53  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=70.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+.+++++++++.++++++.+.|.++ |+++.  ++++|.++.++..   .         ++.+++++|..+..+..+|+
T Consensus       346 ~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~---~---------~~~~~~~~L~~~gi~~~~~~  411 (447)
T PRK00451        346 GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLP---K---------PAEEVNEALLEKGILGGYDL  411 (447)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecC---C---------CHHHHHHHHHhcCCCCCccc
Confidence            35678999999999999999999987 57664  5666665333311   1         25689999864444445777


Q ss_pred             CCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWR  122 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~  122 (126)
                      +.|+..     ..+++|+++.  .+++++++.++.|.+++
T Consensus       412 ~~~~~~-----~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        412 GRYYPE-----LGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             ccccCC-----cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            877642     2478999997  37888899888887654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=98.11  E-value=8.5e-05  Score=55.75  Aligned_cols=100  Identities=9%  Similarity=0.016  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      .+++++.++.++.+.+.|.++ |+.+..+.++..+++.++..             +..++.+.| .+.||.+.+|+.+..
T Consensus       295 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~L-~~~gI~v~~g~~~~~  360 (401)
T PRK10874        295 NQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------------HHSDLVTLL-AEYGIALRAGQHCAQ  360 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------------CHHHHHHHH-HHCCcEEeccccchH
Confidence            345677777788888888877 77665444454666667542             255777775 578999999986642


Q ss_pred             Cc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           90 DE-HKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        90 ~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .- ..-...+++|+|++.  ++++++..++.|.+++++
T Consensus       361 ~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        361 PLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             HHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            10 000125799999995  788899999998877653

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=98.10  E-value=5.8e-05  Score=56.51  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ++++++.+.|+++++.+.+   ++. +.......|+++|++++.              ++.+|++.|+ ++||.+.|+. 
T Consensus       298 ~~~~~~~~~l~~~l~~l~~---~~~~~~~~v~g~G~~~~i~~~~--------------~~~~~~~~l~-~~GV~~~p~~-  358 (389)
T PRK01278        298 DNVQRMGLYLKQKLEGLVD---RFPDVIEEVRGKGLLLGLKCVV--------------PNRDLVQALR-DEGLLTVGAG-  358 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHh---hCCCceeeEecccEEEEEEEec--------------CHHHHHHHHH-HCCeEEeecC-
Confidence            3455566666665554422   222 221223367888988753              2668888876 6699999862 


Q ss_pred             cccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                                .+++||+++  .+++++++++++|.+++.+
T Consensus       359 ----------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        359 ----------DNVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             ----------CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence                      368999865  4889999999999988753

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=98.06  E-value=0.0001  Score=54.92  Aligned_cols=85  Identities=22%  Similarity=0.257  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC--CCccc--CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA--GMVPV--IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~--g~~~~--~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ..++.++++.+.+.+.|.+.  ++...  ....|+++|++++.              +...+...| .++||.+.|+   
T Consensus       287 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~--------------~~~~~~~~l-~~~gv~v~~~---  348 (377)
T PRK02936        287 SFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE--------------EVAPVIEQL-REEGLLVLSA---  348 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc--------------hHHHHHHHH-HHCCeEEecC---
Confidence            34466667777777777653  23321  12357899999874              244676765 6889999883   


Q ss_pred             ccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhh
Q psy788           88 YSDEHKHLGENLIRYCF--FKKDETLREASSILQTWR  122 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~  122 (126)
                              +.+++|+++  +.+++++++++++|.+++
T Consensus       349 --------g~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        349 --------GPNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             --------CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence                    246899996  458999999999998753

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=98.04  E-value=0.00013  Score=55.49  Aligned_cols=97  Identities=18%  Similarity=0.020  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           11 YTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +.+++.-+.-++.+.+...+++ +....+. |+++|+++.......+     +......+...+ .++||.+.|++.|+ 
T Consensus       320 ~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~~~~-----~~~~~~~l~~~~-~~~Gv~i~p~~~f~-  391 (420)
T TIGR00700       320 ERARQIGRLVTDRLTTLKAVDPRIGDVRGL-GAMIAVELVDPGTTEP-----DAGLAERIATAA-HAAGLLLLTCGMFG-  391 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEEEeecc-ceEEEEEEecCCCCCc-----cHHHHHHHHHHH-HHCCeEEeccCCCC-
Confidence            3333333333333333333343 3334455 7788888742100000     000133455554 58999999987663 


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                              +++||+++.  +++++++++++|.++++
T Consensus       392 --------~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       392 --------NIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             --------CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence                    589999873  88999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PLN02368 alanine transaminase

Probab=98.02  E-value=7e-06  Score=62.19  Aligned_cols=40  Identities=18%  Similarity=0.345  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCC
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQ   50 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~   50 (126)
                      +.+++.|++||+++.+.|+++ |+.+..|+||||+|++++-
T Consensus       357 ~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~l  397 (407)
T PLN02368        357 KGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKL  397 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCCC
Confidence            567899999999999999998 8999999999999998874

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=98.02  E-value=0.00016  Score=54.57  Aligned_cols=93  Identities=13%  Similarity=0.000  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCccc
Q psy788           14 SEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHK   93 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~   93 (126)
                      +..++++++.+.+.|.+.|+++.++.|.++. +.+...            .+..++++.|+.++||.+.|+......   
T Consensus       301 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~i~~-v~~~~~------------~~~~~l~~~L~~~~Gi~v~~~~~p~~p---  364 (406)
T PRK13393        301 RERHQDRVARLRARLDKAGIPHLPNPSHIVP-VMVGDP------------VLCKQISDELLDRYGIYVQPINYPTVP---  364 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCCCCCeEE-EEeCCH------------HHHHHHHHHHHHhCCEEEEeECCCCCC---
Confidence            5667888899999998777777777777543 444321            035678888764579999997543321   


Q ss_pred             CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           94 HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        94 ~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                       .+.+++|++...  ++++++..++.|.+++.
T Consensus       365 -~g~~~iRis~~~~~t~edid~l~~~l~~~~~  395 (406)
T PRK13393        365 -RGTERLRITPSPLHTDADIEHLVQALSEIWA  395 (406)
T ss_pred             -CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence             245789999973  88999999999988764

>PLN00144 acetylornithine transaminase

Probab=97.99  E-value=0.00018  Score=54.03  Aligned_cols=89  Identities=16%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ++++.+++.+   ++.+.+.+.+++.....-..|+++|+++..              +...+...+ .++||.+.|+   
T Consensus       290 ~~~~~~g~~l---~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--------------~~~~~~~~~-~~~Gv~i~~~---  348 (382)
T PLN00144        290 ASVAKKGEYL---RELLRRKLGGNPHVKEVRGVGLLVGIQLDV--------------PAGPLVDAC-RDSGLLVLTA---  348 (382)
T ss_pred             HHHHHHHHHH---HHHHHHHHhhCCCceeeecCceEEEEEecC--------------ccHHHHHHH-HHCCeEEeec---
Confidence            4566666666   344555555553212222389999999942              245677775 5899999986   


Q ss_pred             ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      +       ..+.+|++.+.  +++++++++++|.+++.+
T Consensus       349 ~-------~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~  380 (382)
T PLN00144        349 G-------KGDVVRLVPPLVISEAELEQAVEILADCLPA  380 (382)
T ss_pred             C-------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence            1       13689999985  788999999999988753

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=97.91  E-value=0.00034  Score=52.50  Aligned_cols=100  Identities=7%  Similarity=0.003  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      .+++++..+-++.+.+.|.++ |+.+..+.++..+++.++..             +..++...| .++||.+.+|+.+..
T Consensus       292 ~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------------~~~~l~~~L-~~~gI~v~~g~~~~~  357 (398)
T TIGR03392       292 AAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------------HHSDLAALL-AESGIALRAGQHCAQ  357 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------------CHHHHHHHH-HhCCEEEecCccchH
Confidence            355666666777778888776 66655444455666666532             256787776 588999999986542


Q ss_pred             Cc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           90 DE-HKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        90 ~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .- ..-...+++|+|++.  +.++++..++.|.+++++
T Consensus       358 ~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       358 PLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             HHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            10 000024799999984  788899999999887764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=97.87  E-value=0.00043  Score=51.30  Aligned_cols=95  Identities=8%  Similarity=-0.036  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++.+.+++++++++.+.+.|.++|+.+..+.     +...+|  ++... ..         +..++.+.| .++||.+.|
T Consensus       262 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~~-~~---------~~~~l~~~L-~~~gi~v~~  328 (368)
T PRK13479        262 GVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFH--APADP-AY---------DFKEFYERL-KEQGFVIYP  328 (368)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEE--CCCCC-Cc---------CHHHHHHHH-HHCCEEEec
Confidence            4677788999999999999988887653331     122333  22210 01         256788886 478999999


Q ss_pred             CCCcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      |..+.        .+++|++. +. +.++++..++.|.+++++
T Consensus       329 g~~~~--------~~~iRis~~~~~t~edi~~~l~~L~~~l~~  363 (368)
T PRK13479        329 GKLTQ--------VDTFRIGCIGDVDAADIRRLVAAIAEALYW  363 (368)
T ss_pred             CCCCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            85431        46899986 54 888999999999887764

>PRK07179 hypothetical protein; Provisional

Probab=97.85  E-value=0.0006  Score=51.40  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ...++.++++++.+.+.|.++|+++. +.+ .++++.++..    .        +...+.+.| .++||.+.   .|...
T Consensus       302 ~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~-~i~~l~~~~~----~--------~~~~~~~~L-~~~GI~~~---~~~~p  363 (407)
T PRK07179        302 DDRRARLHANARFLREGLSELGYNIR-SES-QIIALETGSE----R--------NTEVLRDAL-EERNVFGA---VFCAP  363 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCC-CCC-CEEEEEeCCH----H--------HHHHHHHHH-HHCCceEe---eecCC
Confidence            45788899999999999988877765 444 5677776531    0        244566665 58899733   33321


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .. ....+++||+++.  +++++++.++.|.+++.+
T Consensus       364 ~~-~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        364 AT-PKNRNLIRLSLNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             CC-CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence            10 0135799999985  889999999999887653

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=97.81  E-value=0.00027  Score=52.61  Aligned_cols=101  Identities=12%  Similarity=0.033  Sum_probs=69.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788            7 KCYFYTISEELRPKREILADALDK-A-GMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV   79 (126)
                      ..+++.+..++++.++.+.+.|.+ + ++.+..+.     +.+.+|+...               +..++...| .++||
T Consensus       250 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l-~~~gI  313 (379)
T TIGR03402       250 TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI---------------EGEAILLLL-DMEGI  313 (379)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---------------CHHHHHHhh-ccCCE
Confidence            346777888888889999998875 5 55554322     3455555321               255777775 68899


Q ss_pred             eEeCCCCcccCccc------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           80 QGIPPSAFYSDEHK------------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        80 ~v~pg~~f~~~~~~------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .+.+|+.+......            ....+.+|+|++.  +.++++..++.|.++++
T Consensus       314 ~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~  371 (379)
T TIGR03402       314 CASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA  371 (379)
T ss_pred             EEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            99999877543100            0014789999995  88899999999987765

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=97.76  E-value=0.00054  Score=52.14  Aligned_cols=95  Identities=17%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----C-CcccCCCcceEEE-EeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           12 TISEELRPKREILADALDKA----G-MVPVIPDGGYFMV-ADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g-~~~~~p~gg~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.+.++++.+.+.+.|+++    + +....+.|.||.+ +..+...  .+     +..-...+...+ .++||.+.|+.
T Consensus       318 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~--~~-----~~~~~~~l~~~~-~~~Gv~i~~~~  389 (421)
T PRK06777        318 KLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTG--KP-----SPEFTRQYQRQA-LEEGLLLLSCG  389 (421)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccC--Cc-----cHHHHHHHHHHH-HhCCeEEeecC
Confidence            46667777777777777664    2 3346788888864 3222111  00     000122344443 47999999986


Q ss_pred             CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      .|+         +++||+..  .+++++++++++|.+++.
T Consensus       390 ~~g---------~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        390 VHG---------NVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             CCC---------CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            653         58999985  489999999999988764

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=97.71  E-value=0.0012  Score=50.79  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ++++.+.+.+.++.+.+.+   +++ +....+.|+|+.|.-........+     +......+.+.+ .++||.+.|+..
T Consensus       342 ~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~-~~~Gvlv~~~~~  412 (451)
T PRK06918        342 DRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEP-----DKTLTANICKEA-NKRGLLLLSAGT  412 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCC-----cHHHHHHHHHHH-HHCCeEEeecCC
Confidence            3445555555444443322   232 222457789888776532100000     000134566654 589999999865


Q ss_pred             cccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      |+         +++||+++  .++++|++++++|.++++
T Consensus       413 ~~---------~~lrl~p~l~~t~~~id~~l~~l~~~l~  442 (451)
T PRK06918        413 YG---------NVIRVLMPLVITDEQLEEGLTIIEESLQ  442 (451)
T ss_pred             CC---------CEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence            52         57999986  378999999999998875

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=97.71  E-value=0.001  Score=49.96  Aligned_cols=99  Identities=11%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++.++++..+.++.+.+.|.++ ++++..|.     +++.. +.++..             +..++...| .+.||.+.+
T Consensus       293 ~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~-~~~~~~-------------~~~~~~~~L-~~~gI~v~~  357 (403)
T TIGR01979       293 LENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIIS-FNVEGV-------------HPHDVGTIL-DEEGIAVRS  357 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEE-EEeCCc-------------CHHHHHHHH-hhCCEEEcc
Confidence            3456777778888888888776 67765543     66544 456532             245676664 688999998


Q ss_pred             CCCcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      |+...... ......+++|+|++.  +.++++..++.|.++++
T Consensus       358 g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~  400 (403)
T TIGR01979       358 GHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRK  400 (403)
T ss_pred             hhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence            87432100 000125789999984  77888888888876543

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=97.68  E-value=0.00028  Score=52.14  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcc--------------cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHH
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVP--------------VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKW   72 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~--------------~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (126)
                      +.+.--++.+++|...|.+++.+- -|+.              ..| +.-|.|+++...+             +.+....
T Consensus       255 ~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~p-sPafAWlkCe~ee-------------d~DC~~~  320 (363)
T PF04864_consen  255 DIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREP-SPAFAWLKCEREE-------------DEDCYAV  320 (363)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE----SEEEEEESSCG-------------GSSHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCC-CCCeEEEecCCcc-------------cccHHHH
Confidence            456667788999999999999753 1222              123 3449999998632             2233334


Q ss_pred             HHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           73 MTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        73 l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                       ++++||.-..|..|+.+      +.|+|+|.-..++.++.-++||..+
T Consensus       321 -l~~~~I~tr~G~~fga~------~ryVRlSml~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  321 -LREAKIITRSGVLFGAD------SRYVRLSMLKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             -HHCTTEEEEEGGGGTS-------TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred             -HHhCCcccCCCCccCCC------CCeEEEeccCCHHHHHHHHHHHHhh
Confidence             46999999999999974      7899999999999999999999764

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=97.68  E-value=0.0013  Score=49.33  Aligned_cols=86  Identities=16%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHhC----CC-cccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           15 EELRPKREILADALDKA----GM-VPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        15 ~~~~~r~~~l~~~l~~~----g~-~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +..+++.+.+.+.|.+.    ++ ....| .|+++|+.++.... .         +..+++..|. ++||.+.|+     
T Consensus       302 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~~-~---------~~~~~~~~l~-~~Gv~v~~~-----  364 (400)
T PTZ00125        302 ENAQRLGEVFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSDG-V---------NAWDLCLKLK-ENGLLAKPT-----  364 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCcc-h---------HHHHHHHHHH-HCCeEEeec-----
Confidence            33444445555555442    32 22334 57788888864210 1         3567888875 789999884     


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                            ..+++||+..  .+++++++++++|.++++
T Consensus       365 ------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~  394 (400)
T PTZ00125        365 ------HDNIIRFAPPLVITKEQLDQALEIIKKVLK  394 (400)
T ss_pred             ------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence                  1468999954  588999999999988776

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=97.67  E-value=0.0013  Score=50.01  Aligned_cols=99  Identities=15%  Similarity=0.071  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            8 CYFYTISEELRPKREILADALDK-AGMVPVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~-~g~~~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +++++++ .+.++....++.|.+ ++. +..+.| |+++|++++.....     ..+......+...++ ++||.+.+. 
T Consensus       318 ~~~~~~~-~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~-----~~~~~~~~~l~~~~~-~~Gv~i~~~-  388 (421)
T PRK09792        318 SLCERAN-QLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTG-----EPSAAIAQKIQQRAL-AQGLLLLTC-  388 (421)
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccC-----CcchHHHHHHHHHHH-HCCcEEeec-
Confidence            5667777 445555544555543 343 457888 99999999742100     000012346777754 789998431 


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                        +      ...+.+||..+.  +++++++++++|.++++
T Consensus       389 --g------~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        389 --G------AYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             --C------CCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence              1      135789998774  88999999999988774

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=97.64  E-value=0.0011  Score=49.75  Aligned_cols=87  Identities=11%  Similarity=0.029  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           12 TISEELRPKREILADALDKAGMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      ..++.+++.++.+.+.|++.+..+  .....|+++|++++..             ....+.+.+ .++||.+.|.     
T Consensus       303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------------~~~~~~~~l-~~~Gv~~~~~-----  363 (398)
T PRK03244        303 GLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------------VAKAVEAAA-REAGFLVNAV-----  363 (398)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-------------HHHHHHHHH-HHCCeEEeec-----
Confidence            345666677777888887754321  2334788999999641             255677876 4789999882     


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                            ..+.+|++++.  ++++++.+++.|.++++
T Consensus       364 ------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~  393 (398)
T PRK03244        364 ------APDVIRLAPPLIITDAQVDAFVAALPAILD  393 (398)
T ss_pred             ------CCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence                  13679999764  78899999999998876

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=97.64  E-value=0.00092  Score=49.90  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .++++.+++++++.++.+.+.|.++ ++.+..|..   +-++.+.++..             +..++...| .++||.+.
T Consensus       254 ~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~L-~~~gI~v~  319 (382)
T TIGR03403       254 NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-------------EGEAMLWDL-NKAGIAAS  319 (382)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-------------CHHHHHHhh-ccCCEEEE
Confidence            3467778889999999999999876 677655431   22444555531             255676775 58899999


Q ss_pred             CCCCcccCcc-c-----------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEH-K-----------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~-~-----------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .|+......- +           ....+.+|+|+..  +.++++..++.|.++++
T Consensus       320 ~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~  374 (382)
T TIGR03403       320 TGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ  374 (382)
T ss_pred             chhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            8875431100 0           0013679999995  88899999999987765

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=97.62  E-value=0.0014  Score=49.40  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCC---CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           13 ISEELRPKREILADALDKAG---MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~g---~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +.+.++++++.+.+.|++.+   +....+. |.|++++++.              ++.++++.|. ++||.+.|.     
T Consensus       308 l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~-g~~~~~~~~~--------------~~~~~~~~l~-~~Gv~~~~~-----  366 (396)
T PRK04073        308 LPERSLELGEYFKEQLKEIDNPMIKEVRGR-GLFIGVELNE--------------PARPYCEALK-EEGLLCKET-----  366 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCcccceecc-eEEEEEEecc--------------hHHHHHHHHH-HCCeEEecC-----
Confidence            44666777888888887753   3333445 5678888863              2567888864 789998762     


Q ss_pred             CcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhh
Q psy788           90 DEHKHLGENLIRYCF--FKKDETLREASSILQTWR  122 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~  122 (126)
                            +.+++|++.  ..+++++++++++|.+++
T Consensus       367 ------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        367 ------HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             ------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence                  146899995  458899999999998765

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=97.62  E-value=0.002  Score=48.43  Aligned_cols=87  Identities=11%  Similarity=-0.007  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc---ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           13 ISEELRPKREILADALDKAGMV---PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~g~~---~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +.+.++++.+.+.+.|++.+..   ...+.|.|+.|.-.+...            +..++++.|. +.||.+.+.     
T Consensus       309 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~------------~~~~~~~~L~-~~GV~v~~~-----  370 (401)
T PRK00854        309 MIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAG------------GARQYCEALK-ERGLLAKDT-----  370 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCch------------hHHHHHHHHH-HCCeEEecC-----
Confidence            6788888889999999876422   124556655543323210            3567888875 679998641     


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                            +.+++|++..  .+++++++++++|.+++.
T Consensus       371 ------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        371 ------HDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             ------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence                  2468999974  488999999999998775

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.53  E-value=0.0012  Score=49.28  Aligned_cols=100  Identities=8%  Similarity=0.097  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee-EeC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ-GIP   83 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~-v~p   83 (126)
                      .+++.+.++.++.+ +.+.+.|.+.|+++  ..|..+.|++++++......    ..+..+...+.+.| .++||. +.|
T Consensus       264 ~~~l~~~~~~~~~~-~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~----~~~~~~~~~~~~~L-~e~GI~~ir~  337 (370)
T TIGR02539       264 VERVKRWDEEVKKT-RWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIA----QKHKRRGYFLYEEL-KKRGIHGIRS  337 (370)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHh----hhhccccHHHHHHH-HhCCCccccC
Confidence            34555556666665 47899998888775  34566778888876320000    00000234577775 588996 332


Q ss_pred             CCCcccCcccCCCCCeEEEEee-CChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFF-KKDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~-~~~e~i~~~~~~l~~~~~  123 (126)
                          +       .++++|+++. .+++++++.++.|.++++
T Consensus       338 ----~-------~~~~iRis~~~~t~e~i~~l~~~L~~~~~  367 (370)
T TIGR02539       338 ----G-------QTKYFKLSVYGLTKEQVEYVVDSFEEIVE  367 (370)
T ss_pred             ----C-------cceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence                2       2469999973 388899999999988765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=97.47  E-value=0.0021  Score=48.24  Aligned_cols=95  Identities=20%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+.+.++++.+.+.+.|++.    +.....+..|.++|+.++....   . ...+......++..|. ++||.+.|++  
T Consensus       313 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~-~~gv~v~~~~--  385 (413)
T cd00610         313 GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRA---T-KPPDKELAAKIIKAAL-ERGLLLRPSG--  385 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCC---c-CCcchHHHHHHHHHHH-HCCeEEeecC--
Confidence            35566666677777766654    2222223456788888864210   0 0000013557888764 7899999974  


Q ss_pred             ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                               .+++|++++.  +++++++++++|.+++
T Consensus       386 ---------~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         386 ---------GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             ---------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence                     2568997764  7889999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=97.46  E-value=0.0053  Score=45.36  Aligned_cols=89  Identities=11%  Similarity=0.079  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .++++++...+.++.+.+.|.+.|++ +..|..+ ++.++++               +..++.+.|. ++||.+.++.  
T Consensus       280 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~---------------~~~~v~~~L~-~~gi~v~~~~--  340 (371)
T PRK13520        280 GYRKVVERCMENTRWLAEELKERGFEPVIEPVLN-IVAFDDP---------------NPDEVREKLR-ERGWRVSVTR--  340 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCce-EEEEecC---------------CHHHHHHHHH-HCCceeccCC--
Confidence            45678888888889999999877877 5666666 4445554               2457778764 7799887632  


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                              ..+++|+++.  .++++++..++.|.+.+++
T Consensus       341 --------~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  371 (371)
T PRK13520        341 --------CPEALRIVCMPHVTREHIENFLEDLKEVKKR  371 (371)
T ss_pred             --------CCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence                    2468999987  3788999999999877653

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=97.46  E-value=0.0023  Score=48.37  Aligned_cols=90  Identities=7%  Similarity=0.031  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC--Cc-c-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKAG--MV-P-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g--~~-~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+++.++++.+.+.+.|++.+  .. + .....|+++|++++...   .       .....+...+ .++||.+.|.   
T Consensus       303 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~---~-------~~~~~~~~~l-~~~Gv~v~~~---  368 (406)
T PRK12381        303 EMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEY---A-------GKAKQISQEA-AKAGVMVLIA---  368 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCch---h-------hHHHHHHHHH-HHCCcEEeeC---
Confidence            578888899999999888752  22 2 23356889999986420   0       0245676765 5889999753   


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      +        ++.+|++++  .+++++++++++|.++++
T Consensus       369 g--------~~~lRl~p~~~~t~~~i~~~~~~l~~~l~  398 (406)
T PRK12381        369 G--------PNVVRFAPALNISEEEITTGLDRFARACE  398 (406)
T ss_pred             C--------CCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence            1        368999887  488999999999988775

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=97.45  E-value=0.0045  Score=46.76  Aligned_cols=104  Identities=13%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++..+++++++++.+.+.|++.|+++.. +..+.++|+.++..+  +         +..++.+.| .+.||.+.++..
T Consensus       279 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~--~---------~~~~~~~~L-~~~GI~v~~~~~  346 (416)
T PRK00011        279 PEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRSKG--L---------TGKEAEAAL-EEANITVNKNAV  346 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcccC--C---------CHHHHHHHH-HHcCcEEccCcC
Confidence            356788899999999999999888877643 122489999986421  1         245676765 688999975432


Q ss_pred             cccCcccCCCCCeEEEEe------eCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCF------FKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~------~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...... ...+..+|++.      +.+.++++.-++.|.+++++
T Consensus       347 p~~~~~-~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        347 PFDPRS-PFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             CCCCCC-CCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            111100 01345789854      22467788888888776553

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=97.36  E-value=0.0041  Score=46.07  Aligned_cols=94  Identities=10%  Similarity=0.035  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCC---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVIP---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++.+++..++.++.+.+.|+++ ++++..+   .++ ++++.++..             +..++.+.| .++||.+.+|.
T Consensus       273 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~i~~~l-~~~gi~i~~g~  337 (373)
T cd06453         273 MEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAG-VVSFNLEGI-------------HPHDVATIL-DQYGIAVRAGH  337 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCC-eEEEEECCc-------------CHHHHHHHH-HHCCEEeccCc
Confidence            4567777788888888988877 5666432   344 556666531             356787876 57899999887


Q ss_pred             CcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788           86 AFYSDE-HKHLGENLIRYCFFK--KDETLREASSIL  118 (126)
Q Consensus        86 ~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l  118 (126)
                      .+.... ......+++|++++.  +.+++++.++.|
T Consensus       338 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         338 HCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             cchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            543210 000125799999995  788888877653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=97.36  E-value=0.0036  Score=45.83  Aligned_cols=95  Identities=8%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCc-ccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQL-RPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ..++.+++++.+.++.+.+.|.+. ++.+ .+|++++.+|. ++.. ....         +..++.+.| .+.|+.+.++
T Consensus       244 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~-~~~~~~~~~---------~~~~i~~~L-~~~g~~~~~~  312 (345)
T cd06450         244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFR-LKPSVKLDE---------LNYDLSDRL-NERGGWHVPA  312 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE-ECCcchhhH---------HHHHHHHHH-HhcCCEEEEe
Confidence            456778888888889999999877 6665 45788876665 3321 0001         245788886 4777777776


Q ss_pred             CCcccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHH
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK---KDETLREASSILQT  120 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~  120 (126)
                      ..|.       .+.++|++++.   +.++++..++.|.+
T Consensus       313 ~~~~-------~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         313 TTLG-------GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             eEEC-------CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            5443       25789999984   66888888887764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK02948 cysteine desulfurase; Provisional

Probab=97.31  E-value=0.0016  Score=48.48  Aligned_cols=103  Identities=10%  Similarity=0.032  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEE-----eeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVA-----DWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +++...++.+++.++.+.+.|++.++.+..+...-+.+.     .++.    .         +..++...| .++||.+.
T Consensus       253 ~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~----~---------~~~~~~~~l-~~~gI~v~  318 (381)
T PRK02948        253 KNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG----I---------EGQYTMLEC-NRRGIAIS  318 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCC----C---------CHHHHHHhc-ccCCEEEE
Confidence            567888999999999999999887765443221112111     1121    1         245666665 58899999


Q ss_pred             CCCC----cccCc--------ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSA----FYSDE--------HKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~----f~~~~--------~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      +|+.    |....        ......+++|+|++.  ++++++..++.|.+++++
T Consensus       319 ~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~  374 (381)
T PRK02948        319 TGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQ  374 (381)
T ss_pred             chHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9874    21000        000124789999984  788899999988877653

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=97.30  E-value=0.005  Score=46.81  Aligned_cols=92  Identities=14%  Similarity=0.054  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ++++++.+.++++.+.+.+.+.  ++....+..|+++|++++...            ....+...+ .++||.+.|... 
T Consensus       318 ~~~~~~g~~l~~~l~~l~~~~~--~~~~~vrg~Gl~~~l~l~~~~------------~~~~~~~~~-~~~Gv~v~~~~~-  381 (412)
T TIGR02407       318 KAVQRKSEIIQERLDRIVAEYP--ELIKQVRGRGLMQGIECGDGD------------LAGKIAKAA-FENGLIIETSGP-  381 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCC--CceEeeecceeEEEEEecChH------------HHHHHHHHH-HHCCCEEeccCC-
Confidence            4455555555555544333321  133456678999999997521            245677775 488999987421 


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                              ..+.+|++-.  .++++++++++.|.+++.
T Consensus       382 --------~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       382 --------NDEVIKLLPPLTIDEETLQQGLDILEQAVE  411 (412)
T ss_pred             --------CCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                    2356888766  388999999999988764

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK07505 hypothetical protein; Provisional

Probab=97.25  E-value=0.0078  Score=45.38  Aligned_cols=55  Identities=16%  Similarity=0.162  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN  125 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~  125 (126)
                      ..++.+.|. +.||.+.|+..+...    .+.+++|++++.  ++++++++++.|.+++++.
T Consensus       344 ~~~~~~~l~-~~Gi~v~~~~~p~~~----~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~  400 (402)
T PRK07505        344 AIKAAKQLL-DRGFYTSPVFFPVVA----KGRAGLRIMFRASHTNDEIKRLCSLLKEILDEG  400 (402)
T ss_pred             HHHHHHHHH-HCCCeEeeecCCCCC----CCCceEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            557888875 889999997433221    134799999983  8899999999999888754

>PLN02409 serine--glyoxylate aminotransaminase

Probab=97.21  E-value=0.016  Score=43.86  Aligned_cols=96  Identities=9%  Similarity=-0.070  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .++++++++++..+.+.+.|.+.|+++..|+    .+...|+.++..   .         +..++...|..+.|+.+.+|
T Consensus       270 G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~---~---------~~~~l~~~l~~~~~i~i~~G  337 (401)
T PLN02409        270 GLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEG---I---------DSAEIVKNAWKKYNLSLGLG  337 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCC---C---------CHHHHHHHHHHhCCEEEEcC
Confidence            4678889999999999999987787765442    223456666642   1         35678888877889999998


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..-.       ....||++.-.  +.+.+...++.|..+++
T Consensus       338 ~~~~-------~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~  371 (401)
T PLN02409        338 LNKV-------AGKVFRIGHLGNVNELQLLGALAGVEMVLK  371 (401)
T ss_pred             CCcc-------cCCEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence            6321       24789998864  77888888888887765

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=97.19  E-value=0.0092  Score=44.64  Aligned_cols=94  Identities=10%  Similarity=-0.010  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIP-----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p-----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ++++++++..+.++.+.+.|.+. ++++..|     .++ ++.+.++..             +..++.++| .++||.+.
T Consensus       291 ~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~l~~~L-~~~gI~v~  355 (397)
T TIGR01976       291 SFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-------------PPQRVVRRL-ADQGIDAW  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-------------CHHHHHHHH-HHCCeEEE
Confidence            35667777777788888888776 4766443     455 455555431             255788886 58899999


Q ss_pred             CCCCcccCc----ccCCCCCeEEEEeeC--ChhHHHHHHHH
Q psy788           83 PPSAFYSDE----HKHLGENLIRYCFFK--KDETLREASSI  117 (126)
Q Consensus        83 pg~~f~~~~----~~~~~~~~~Rl~~~~--~~e~i~~~~~~  117 (126)
                      .|+.+....    .-....+++|+|+..  ++++++..++.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~  396 (397)
T TIGR01976       356 AGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEA  396 (397)
T ss_pred             eCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHh
Confidence            987664200    000124689999974  66777776654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=97.19  E-value=0.012  Score=44.40  Aligned_cols=97  Identities=10%  Similarity=0.015  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCCC--cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVIPD--GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~--gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.++++.++..+.+.+.|.++ ++++..|.  +|+.. +.++..             +..++...| .+.||.+.+|+..
T Consensus       300 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~-~~~~~~-------------~~~~~~~~L-~~~gI~v~~g~~c  364 (406)
T PRK09295        300 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA-FNLGKH-------------HAYDVGSFL-DNYGIAVRTGHHC  364 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEE-EEECCc-------------CHHHHHHHH-HhCCeEEeccccc
Confidence            456667777777888888776 66665443  55443 335431             255677765 6889999998744


Q ss_pred             ccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           88 YSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        88 ~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      .... .....++++|+|++.  +.++++..++.|.++.
T Consensus       365 ~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~  402 (406)
T PRK09295        365 AMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH  402 (406)
T ss_pred             hHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            3210 000124689999995  7788888888887653

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=97.15  E-value=0.0068  Score=45.30  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCc-c-cCCCcceEEEEeeCCccc--ccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           12 TISEELRPKREILADALDKA-GMV-P-VIPDGGYFMVADWTQLRP--MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~-g~~-~-~~p~gg~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ...+.++++++.+.+.|+++ ++. + .+|.||||.| +++....  .+-     +..+...++..|-....+.+.|++.
T Consensus       249 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~-----~~l~~~~~~~slg~~~sl~~~p~~~  322 (366)
T PRK08247        249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFL-----KSLKLITFAESLGGVESFITYPATQ  322 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHH-----HcCCcceEccCCCCCceEEECCccc
Confidence            33446799999999999988 555 4 4449999998 5642100  000     0000112222222345677889987


Q ss_pred             cccCc--c----cCCCCCeEEEEeeC
Q psy788           87 FYSDE--H----KHLGENLIRYCFFK  106 (126)
Q Consensus        87 f~~~~--~----~~~~~~~~Rl~~~~  106 (126)
                      +...-  +    ....++.+||+++.
T Consensus       323 ~~~~~~~~~r~~~gi~~~~~R~svGl  348 (366)
T PRK08247        323 THADIPEEIRIANGVCNRLLRFSVGI  348 (366)
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEecc
Confidence            64321  0    01235799999997

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=97.11  E-value=0.0083  Score=44.84  Aligned_cols=91  Identities=18%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceE--EEEeeCCc-ccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYF--MVADWTQL-RPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~--~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      +..+++++++++++++++.+.|.+++... .+.+.++  ++++++.. +  .         ++.+++..|. +.||.+.+
T Consensus       303 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~~--~---------~~~~~~~~L~-~~gi~~~~  369 (398)
T cd00613         303 PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLYG--I---------RAEDLAKALI-DGGFHAPT  369 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcch--H---------HHHHHHHhhh-hcCccccc
Confidence            34677889999999999999998875333 3445555  46666531 1  1         3567888865 77887543


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK--KDETLREASSIL  118 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l  118 (126)
                      ..   ..     ..+.+|++...  ++++++..++.|
T Consensus       370 ~~---~~-----~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         370 MY---LP-----VDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             cc---cC-----CCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            21   11     35789999974  788888887653

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=97.10  E-value=0.015  Score=43.07  Aligned_cols=97  Identities=11%  Similarity=0.045  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCC----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVIP----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +.++++.++..+.+.+.|.+. ++++..|    ..+-.+++.++..             +..++...|....||.+.+|.
T Consensus       269 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~L~~~~gi~v~~g~  335 (376)
T TIGR01977       269 ANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------------DSEEVADILDEKFDIATRTGL  335 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------------CHHHHHHHHhccCCEEEEccc
Confidence            455667777777778888765 5665432    1233566666532             356788886533499999987


Q ss_pred             CcccCcc---cCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           86 AFYSDEH---KHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        86 ~f~~~~~---~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                      .+.....   .....+.+|+++..  ++++++..++.|.+
T Consensus       336 ~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       336 HCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             ccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            6642100   00135789999985  78889998888864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=97.00  E-value=0.03  Score=41.41  Aligned_cols=86  Identities=14%  Similarity=0.094  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..+..++++..+.++.+.+.|+++|+. +..|..+ ++.+.++.               ..++.+.| .+.||.+.++. 
T Consensus       284 ~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---------------~~~v~~~L-~~~gi~v~~~~-  345 (373)
T TIGR03812       284 EGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLN-IVAFEVDD---------------PEEVRKKL-RDRGWYVSVTR-  345 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCce-EEEEEeCC---------------HHHHHHHH-HHCCceeccCC-
Confidence            456677888999999999999887654 4445544 44455442               34677776 47799987641 


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                               .++++|+++..  ++++++..++.|.+
T Consensus       346 ---------~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       346 ---------CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             ---------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence                     24689999983  77888888888764

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=96.99  E-value=0.018  Score=43.72  Aligned_cols=100  Identities=9%  Similarity=-0.030  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-------CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC-Ce
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIP-------DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV-KL   79 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p-------~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gV   79 (126)
                      .++.++++..+-++.+.+.|.++ |+++..|       .++ ++.+.++..             +..++.+.|. ++ ||
T Consensus       306 g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~-~v~~~~~~~-------------~~~~v~~~L~-~~~gI  370 (424)
T PLN02855        306 GMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAA-LCAFNVEGI-------------HPTDLSTFLD-QQHGV  370 (424)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCccc-EEEEEECCc-------------CHHHHHHHhc-ccCCE
Confidence            45667777788888888888776 6666433       134 444566542             2557778764 55 99


Q ss_pred             eEeCCCCcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           80 QGIPPSAFYSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        80 ~v~pg~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .+..|+.-.... .....++++|+|++.  +.++++..++.|.++++
T Consensus       371 ~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~  417 (424)
T PLN02855        371 AIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIA  417 (424)
T ss_pred             EEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence            999887432100 000124689999984  78889999999888765

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=96.81  E-value=0.028  Score=42.68  Aligned_cols=104  Identities=14%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCcceEE-EEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPV-IPDGGYFM-VADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~gg~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+++++++.++..++.+.+.++++++... .+.|+|+. ++..+... +.......+......++..|+ ++||.+.++ 
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-  393 (423)
T TIGR00713       317 GVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVT-NYADAKKSDTELFAKFFHEML-DKGVFLPPS-  393 (423)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCC-ChhhhhcccHHHHHHHHHHHH-HCCeEEecC-
Confidence            47888899999999999888888765543 34455433 23322110 000000000001235777765 789997653 


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .|          +.+|++.+.+++++++++++|.+++++
T Consensus       394 ~~----------~~~~l~~~~t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       394 QF----------EACFLSAAHTEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             Cc----------cceeeECCCCHHHHHHHHHHHHHHHhh
Confidence            22          236788877889999999999988753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=96.75  E-value=0.027  Score=42.50  Aligned_cols=90  Identities=13%  Similarity=0.258  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC--Cc---ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           12 TISEELRPKREILADALDKAG--MV---PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g--~~---~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++.++++.+.+.+.|++.+  ..   ...+. |.++-+++....   .       .....++..|. ++||.+.|.  
T Consensus       299 ~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~---~-------~~~~~~~~~l~-~~Gv~~~~~--  364 (397)
T TIGR03246       299 ELLAGVKQRHDLFVDGLEKINARYNVFSEIRGK-GLLIGAVLTEAY---Q-------GKAKQFVNAAA-EEGVIALIA--  364 (397)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecC-ceEEEEEEcCch---h-------hHHHHHHHHHH-HCCeEEeec--
Confidence            467888888888888887652  22   12333 445555553210   0       02557888764 789998762  


Q ss_pred             cccCcccCCCCCeEEE--EeeCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRY--CFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                               +.+++|+  ++..+++++++++++|.+++.+
T Consensus       365 ---------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       365 ---------GPNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             ---------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                     1368999  4556899999999999988764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=96.57  E-value=0.058  Score=39.30  Aligned_cols=86  Identities=15%  Similarity=0.054  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHH--HhCCeeEeCCCCccc
Q psy788           12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMT--KNVKLQGIPPSAFYS   89 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~gV~v~pg~~f~~   89 (126)
                      +.++.+.++++.+.+.|+++|+.+.++.+++. .+..+...   .        ....+...+.  .+.||.+.+.     
T Consensus       248 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~v~~~~~~---~--------~~~~l~~~l~~~~~~gi~~~~~-----  310 (338)
T cd06502         248 RRLRHDHEMARRLAEALEELGGLESEVQTNIV-LLDPVEAN---A--------VFVELSKEAIERRGEGVLFYAW-----  310 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcccccCCeE-EEecCCcc---H--------HHHHHHHHHHHhhhCCEEEEec-----
Confidence            44577778888999999888777777888854 45554211   0        1223444432  1568877662     


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                      .      .+++|++.+.  +.+++++.++.+.+
T Consensus       311 ~------~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         311 G------EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             C------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            1      2689999984  78889999888754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=96.57  E-value=0.072  Score=40.71  Aligned_cols=89  Identities=16%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHh----CC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           13 ISEELRPKREILADALDK----AG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~----~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+..+++.+.+.+.|++    ++ +....+..|+++|+.++...            ....+.+.+ .++||.+.|...+
T Consensus       320 l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~------------~~~~l~~~~-~~~Gv~~~~~~~~  386 (425)
T PRK09264        320 FEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGE------------LAGKIAAEA-FENGLIIETSGPE  386 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChH------------HHHHHHHHH-HHCCCEEeccCCC
Confidence            344444445555554443    22 22234456889999996421            245777775 4889999874322


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                               ...+|++..  .+++++++++++|.++++
T Consensus       387 ---------~~~lr~~p~l~~t~~ei~~~~~~l~~~l~  415 (425)
T PRK09264        387 ---------DEVVKLLPPLTIDEEELEEGLDILEEAVA  415 (425)
T ss_pred             ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence                     245777655  478999999999988765

>PLN02624 ornithine-delta-aminotransferase

Probab=96.46  E-value=0.04  Score=42.73  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhhc
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSILQTWRNK  124 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ..++++.| .++||.+.|+           +.+++||+.  ..++++|++++++|.+++.+
T Consensus       396 a~~~~~~L-~e~GV~v~p~-----------~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        396 AYDVCLKL-KERGLLAKPT-----------HDTIIRLAPPLSISEDELQECSKALSDVLEH  444 (474)
T ss_pred             HHHHHHHH-HhCCeEEecC-----------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            45788886 5899999884           146899986  45899999999999988774

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=96.29  E-value=0.12  Score=39.49  Aligned_cols=76  Identities=13%  Similarity=-0.036  Sum_probs=48.7

Q ss_pred             CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChh
Q psy788           32 GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDE  109 (126)
Q Consensus        32 g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e  109 (126)
                      ++....+.-|+++++++...... +     +......+.+.+ .+.||.+.|.   +.      ..+.+|++.  +.+++
T Consensus       351 ~~~~~vrg~Gl~~gi~~~~~~~~-~-----~~~~~~~~~~~l-~~~Gv~~~~~---g~------~~~~lRl~p~~~~t~~  414 (433)
T PRK08117        351 PVIGDVRGIGLMIGIEIVDPDGE-P-----DGDAVEKILDKC-LEKGLLFYLC---GN------AGNVLRMIPPLTVTKE  414 (433)
T ss_pred             CceeeeecCCcEEEEEEecCCCC-c-----chHHHHHHHHHH-HHCCCEEeec---CC------CCCEEEEeCCccCCHH
Confidence            33334566688888888532100 0     001134566665 5889988762   21      246899995  45999


Q ss_pred             HHHHHHHHHHHhhh
Q psy788          110 TLREASSILQTWRN  123 (126)
Q Consensus       110 ~i~~~~~~l~~~~~  123 (126)
                      +|++++++|.++++
T Consensus       415 ~i~~~~~~l~~~l~  428 (433)
T PRK08117        415 EIDEGLDILDEALT  428 (433)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988775

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=96.24  E-value=0.11  Score=39.19  Aligned_cols=88  Identities=19%  Similarity=0.136  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcc---cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           13 ISEELRPKREILADALDKAGMVP---VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~g~~~---~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +++..++..+.+.+.|++++..+   ..+.|.|+. +.++.....         .+..+++..|. ++||.+.|+     
T Consensus       308 l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~-i~~~~~~~~---------~~~~~l~~~l~-~~Gv~v~~~-----  371 (401)
T TIGR01885       308 LAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNA-IVIDESKTG---------RTAWDLCLKLK-EKGLLAKPT-----  371 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEE-EEeccCcch---------hHHHHHHHHHH-hCCEEEEec-----
Confidence            34455566677777787763222   345666555 344321000         03567888864 889999773     


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhh
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWR  122 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~  122 (126)
                            ..+.+||+..  .+++++++++++|.+++
T Consensus       372 ------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       372 ------HGNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             ------CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence                  1367999875  48899999999998765

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=96.19  E-value=0.066  Score=40.35  Aligned_cols=80  Identities=11%  Similarity=0.163  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +..||.++.+.|..+.+.|.+.    .+.+...+-|||-+.-++                .+++ .+|..+.+|.++.  
T Consensus       311 l~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls----------------~~QV-~rLree~~IY~v~--  371 (396)
T COG1448         311 LEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLS----------------PEQV-DRLREEFGIYLVA--  371 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCC----------------HHHH-HHHHHhccEEEec--
Confidence            5789999999999999999984    488999999999987332                3444 4567788887554  


Q ss_pred             CcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                                 .+  |+|++. +...++.-++.|.++
T Consensus       372 -----------sG--Ri~vaGl~~~ni~~va~ai~~v  395 (396)
T COG1448         372 -----------SG--RINVAGLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             -----------CC--eeeeccCChhhHHHHHHHHHhh
Confidence                       12  999997 777777666666543

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=96.18  E-value=0.004  Score=45.92  Aligned_cols=90  Identities=16%  Similarity=0.062  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .++..++++++.++.+.+.|.+.|+++.. |.+....++.+.-.+  .         +..++...| .+ +|.+.||+.|
T Consensus       258 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~--~---------~~~~v~~~L-~~-~i~v~~g~~~  324 (353)
T TIGR03235       258 NAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG--V---------NSEALIVNL-RA-DAAVSTGSAC  324 (353)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC--c---------CHHHHHHHH-hC-CeEEEchhhc
Confidence            45778889999999999999776777643 333222333332111  1         355777775 44 8999999999


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHH
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREA  114 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~  114 (126)
                      ....   .++.++|.+++.+++.+..+
T Consensus       325 ~~~~---~~~~~~l~~~g~~~~~~~~~  348 (353)
T TIGR03235       325 SSSK---YEPSHVLQAMGLDTDRARGA  348 (353)
T ss_pred             CCCC---CCCCHHHHHcCCCHHHhCcc
Confidence            7642   23457888888866665444

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=96.04  E-value=0.27  Score=38.51  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccC--CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           11 YTISEELRPKREILADALDKAGMVPVI--PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~--p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +..++.+.++-+.+.+.|.+.|+.+..  .+.. .+++++....  .         +...+.+. +.+.||.+.+-....
T Consensus       338 ~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdsh-IV~V~lg~~~--~---------~g~~a~~~-L~e~GI~vn~i~~Pt  404 (493)
T PRK13580        338 QKYAQQVVDNARALAEGFLKRGARLVTGGTDNH-LVLIDVTSFG--L---------TGRQAESA-LLDAGIVTNRNSIPS  404 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCC-EEEEEeCCHH--H---------HHHHHHHH-HHHCCeEEccccCCC
Confidence            556788888889999999888887642  3333 5667776421  0         12244455 569999998765444


Q ss_pred             cCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~  123 (126)
                      .... ...+..+||+...      +++++++.++.|.++++
T Consensus       405 vp~g-~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~  444 (493)
T PRK13580        405 DPNG-AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             CCCC-CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence            3210 0115679998764      46788888888877664

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=96.00  E-value=0.13  Score=39.59  Aligned_cols=96  Identities=17%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHhC--CCcc---cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           13 ISEELRPKREILADALDKA--GMVP---VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~--g~~~---~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+..+++.+.+.+.|+++  ...+   ..+.|.|+ .+++.......+     +......+...+ .++||.+.|+..|
T Consensus       340 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~~~~~~~~~~-----~~~~~~~l~~~~-~~~Gv~~~~~~~~  412 (443)
T PRK06058        340 LVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMI-AIELVKPGTTEP-----DAELTKALAAAA-HAAGVIVLTCGTY  412 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEE-EEEEecCCCCCC-----cHHHHHHHHHHH-HHCCeEEeccCCC
Confidence            4455566666677777653  1222   35666655 455532100000     000123456664 4789999987544


Q ss_pred             ccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +         +.+|+.  ++.+++++++++++|.+++++
T Consensus       413 ~---------~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        413 G---------NVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             C---------CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence            2         478884  666999999999999988753

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=95.98  E-value=0.14  Score=38.76  Aligned_cols=103  Identities=17%  Similarity=0.099  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC--CCcccC---CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            8 CYFYTISEELRPKREILADALDKA--GMVPVI---PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~---p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..+......+..-|+.+.+.|.+.  ++.+..   +--.-.+-+.++..             +.+.+... +..+||.+.
T Consensus       256 ~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------------~gE~ll~~-L~~~gI~vS  321 (386)
T COG1104         256 EELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------------EGESLLLA-LDLAGIAVS  321 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------------cHHHHHHh-ccccCeEEe
Confidence            345566667777788888888764  233321   21223444555542             25556565 578899999


Q ss_pred             CCCCcccCcc-c-----------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEH-K-----------HLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~-~-----------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .||+-.+..- +           ....+.+||||+.  ++++++.+++.|.+++++
T Consensus       322 tGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~  377 (386)
T COG1104         322 TGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKR  377 (386)
T ss_pred             ccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9998876421 0           1134789999996  888999999999888764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=95.78  E-value=0.32  Score=37.03  Aligned_cols=92  Identities=10%  Similarity=0.072  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788           12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE   91 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~   91 (126)
                      ..|..++++-..+.+.+...++.+.++... .+.+-+....            ...+++..|+ +.||.+.+....... 
T Consensus       294 ~~r~~L~~~~~~~~~~~~~~~~~~~~s~s~-I~pv~~gd~~------------~a~~~s~~l~-~~Gi~v~~i~~PTVp-  358 (388)
T COG0156         294 ERRERLQELAAFFRSLLKALGLVLLPSESP-IIPVILGDEE------------RALEASRALL-EEGIYVSAIRPPTVP-  358 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccCCCCCC-eeeeEeCCHH------------HHHHHHHHHH-HCCeeEeeecCCCCC-
Confidence            455666666666665554446666444444 4445454321            3668888876 459999986544332 


Q ss_pred             ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           92 HKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        92 ~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                         .++..+|++.+.  ++++|+..++.|.++
T Consensus       359 ---~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         359 ---KGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             ---CCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence               367889999985  888888888777653

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=95.75  E-value=0.25  Score=38.02  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CCCCc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PPSAF   87 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg~~f   87 (126)
                      .+.++++..++.+.+.+.|.+.|+.+..+.. .-..++.+...+  .         +..++...| .+.||.+. +|- +
T Consensus       301 ~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~--~---------~~~~~~~~L-~~~gI~vs~~~~-p  367 (452)
T PTZ00094        301 WKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFG--I---------TGSKMEKLL-DAVNISVNKNTI-P  367 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCC--C---------CHHHHHHHH-HHCCcEEecccC-C
Confidence            4567788888888999999776776643211 223445554321  1         245666664 67899994 433 2


Q ss_pred             ccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~  123 (126)
                      +...  ...++.+|++...      ++++++..++.|.++++
T Consensus       368 ~~~~--~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        368 GDKS--ALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             CCCc--CCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            2210  0135789999853      27888888887777665

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=95.63  E-value=0.52  Score=35.65  Aligned_cols=105  Identities=7%  Similarity=-0.043  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcc-cCC---------CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788           11 YTISEELRPKREILADALDKAGMVP-VIP---------DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~-~~p---------~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      .+++..++++.+++.+.|++.++++ ...         ..|..+-+.+.....  . ....+.....++++.+ .++||.
T Consensus       261 ~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~Gi~  336 (392)
T PLN03227        261 PQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEA--T-RRTDETLILDQIAHHS-LSEGVA  336 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHH--h-hhhhhhhHHHHHHHHH-HHCCCE
Confidence            3567778888899999887543321 111         224455566643100  0 0000000123677776 478999


Q ss_pred             EeCCCCc----ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAF----YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f----~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +.+....    ...    .++..+|+++..  ++++++++++.|.++++
T Consensus       337 ~~~~~~~~~~~~~~----~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~  381 (392)
T PLN03227        337 VVSTGGHVKKFLQL----VPPPCLRVVANASHTREDIDKLLTVLGEAVE  381 (392)
T ss_pred             EEecccccCCcCCC----CCCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            8752211    111    135678999985  88999999999988775

>KOG0633|consensus

Probab=95.54  E-value=0.46  Score=34.55  Aligned_cols=86  Identities=15%  Similarity=0.033  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCc--ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMV--PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~--~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .++...|+.+-+.|..+...|.++ ++.  +-..++. |+.+++.... + .        -+..+...++...||+|.= 
T Consensus       276 kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daN-FiLi~v~~~~-n-~--------~akkly~q~at~~gVvVRf-  343 (375)
T KOG0633|consen  276 KKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDAN-FILIEVTGGD-N-G--------MAKKLYKQDATKMGVVVRF-  343 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccc-EEEEEEcCCC-c-H--------HHHHHHHHHHHhcceEEEE-
Confidence            577888999988888898888876 322  2333444 7778886431 0 0        1445666677789998752 


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhH
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDET  110 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~  110 (126)
                        .+..   ...++++|++++++++.
T Consensus       344 --rgse---~~c~G~lRitvGt~Een  364 (375)
T KOG0633|consen  344 --RGSE---EGCKGYLRITVGTPEEN  364 (375)
T ss_pred             --cCCc---cccceeEEEEcCCcccc
Confidence              2222   13689999999985543

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=95.43  E-value=0.52  Score=35.13  Aligned_cols=94  Identities=15%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCccc--CC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPV--IP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~--~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.+.++.++..+++.+.|++. |+...  .|  .++.-+-+.++...            .+.++... +.+.|+.+.+|
T Consensus       249 ~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~------------~~~~~~~~-~~~~Gi~~~~~  315 (349)
T TIGR01364       249 VKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE------------LEKRFLKE-AEERGLVSLKG  315 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh------------HhHHHHHH-HHHCCCcccCC
Confidence            6778888888999999999888 55322  12  12222333343210            13455455 45889977776


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN  125 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~  125 (126)
                      ..   .      .+.+|+|+..  +.++++..++.|.++.+||
T Consensus       316 ~~---~------~g~vRvS~~~~nt~edid~l~~al~~~~~~~  349 (349)
T TIGR01364       316 HR---S------VGGMRASIYNAMPLEGVQALVDFMKEFQKKH  349 (349)
T ss_pred             cc---c------cCeeEEECcCCCCHHHHHHHHHHHHHHHHhC
Confidence            44   1      3579999985  7899999999999888775

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=95.15  E-value=0.65  Score=35.43  Aligned_cols=99  Identities=13%  Similarity=0.070  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           12 TISEELRPKREILADALDKAGMVPVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ..++++.++-+.+.+.|.+.|+++..| ..+--+++.+....  .         +...+.+. +.++||.+.+-...+..
T Consensus       286 ~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~--~---------~~~~~~~~-L~~~GI~v~~~~~p~~~  353 (416)
T PRK13034        286 TYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKG--L---------SGKDAEQA-LERAGITVNKNTVPGDT  353 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCC--C---------CHHHHHHH-HHhCCcEEeccCCCCCC
Confidence            456788888888888888778877543 12334556554321  0         23445565 46889988752222110


Q ss_pred             cccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788           91 EHKHLGENLIRYCFFK------KDETLREASSILQTWRN  123 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~  123 (126)
                      .. +..+..+|++...      ++++++..++.|.+++.
T Consensus       354 ~~-p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~  391 (416)
T PRK13034        354 ES-PFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD  391 (416)
T ss_pred             cC-CCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            00 0135679998543      57888999988887765

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=95.14  E-value=0.69  Score=34.73  Aligned_cols=96  Identities=10%  Similarity=0.052  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CcccC--C--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKAG-MVPVI--P--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g-~~~~~--p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.+.++.++..+.+.+.|++.+ +.+..  |  .++.-+-+.++.....          .+.++...++ ++|+.+..|
T Consensus       270 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~----------~~~~~~~~l~-~~~i~v~~g  338 (378)
T PRK03080        270 LDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAA----------VDAAAVAKLL-RENGAVDIE  338 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHH----------HHHHHHHHHH-HcCCeeccc
Confidence            45667777888888888888774 44432  2  1222333444430000          1234556655 558888776


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      . +..      ..+.+|+|+..  +.++++..++.|.++++
T Consensus       339 ~-~~~------~~~~vRis~~~~~t~~di~~l~~al~~~~~  372 (378)
T PRK03080        339 P-YRD------APNGLRIWCGPTVEPADVEALTPWLDWAFE  372 (378)
T ss_pred             c-ccC------CCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            4 221      24789999984  78889998888887665

>PRK14012 cysteine desulfurase; Provisional

Probab=95.11  E-value=0.32  Score=36.66  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccC--C---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVI--P---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~--p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ++..+.+.+++.++.+.+.|.++ ++.+..  +   .+.+++|.....               ..++...|   .++.|.
T Consensus       262 ~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l---~~~~i~  323 (404)
T PRK14012        262 EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE---------------GESLIMAL---KDLAVS  323 (404)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC---------------HHHHHHhC---CCeEEE
Confidence            34455666667777777777665 444321  1   233345444321               23455553   377888


Q ss_pred             CCCCcccCcc------------cCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEH------------KHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~------------~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +|..|.....            .....+.+|++++.  ++++++..++.|.++++
T Consensus       324 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~  378 (404)
T PRK14012        324 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIG  378 (404)
T ss_pred             chhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            8766643210            00124789999995  78889999998887664

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=95.03  E-value=0.57  Score=35.06  Aligned_cols=94  Identities=16%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC-cc-cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKAGM-VP-VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~-~~-~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++.+.++.++..+.+.+.|++.++ .. ..|  ..+.-+-+.++..   .         ++.++...+ .+.|+.+.+|.
T Consensus       260 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~---~---------~~~~~~~~~-~~~Gi~~~~~~  326 (360)
T PRK05355        260 VAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE---E---------LDKKFLAEA-KAAGLVGLKGH  326 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh---H---------HHHHHHHHH-HHCCCcccCCC
Confidence            677788888888899999988753 22 221  1222333344432   1         234555554 47899875554


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN  125 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~  125 (126)
                      .   .      .+.+|+|+..  +.++++..++.|.+++++|
T Consensus       327 ~---~------~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~  359 (360)
T PRK05355        327 R---S------VGGMRASIYNAMPLEGVQALVDFMKEFERRH  359 (360)
T ss_pred             C---c------cCcEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            2   1      3679999985  7899999999999988876

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=95.02  E-value=0.71  Score=34.51  Aligned_cols=95  Identities=11%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-Cccc-CCC---cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKAG-MVPV-IPD---GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g-~~~~-~p~---gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.+.+++++..+.+.+.+.+.+ +++. ...   ......+.+++.   +         +..++...| .+.||.+.+|
T Consensus       259 ~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g---~---------~~~~v~~~L-~~~gI~i~~~  325 (361)
T TIGR01366       259 LDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDD---I---------DAATVAKIL-RANGIVDTEP  325 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCc---c---------CHHHHHHHH-HHCCCeeccC
Confidence            44556777777888888888774 4432 111   111122333321   2         356777776 5779999876


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .  ..-     +.+.+|+|+..  +.++++..++.|.+++++
T Consensus       326 ~--~~l-----~~~~vRis~~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       326 Y--RKL-----GRNQLRVAMFPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             c--ccc-----CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence            3  221     24689999985  888899999988877653

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=95.01  E-value=0.8  Score=35.34  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=42.8

Q ss_pred             ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEE--EeeCChhHHHHHHHHH
Q psy788           41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY--CFFKKDETLREASSIL  118 (126)
Q Consensus        41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l  118 (126)
                      |+++.++++...            ....+...++ +.||.+.|+.           .+.+|+  ++..+++++++++++|
T Consensus       380 G~~~~i~~~~~~------------~~~~~~~~l~-~~Gvl~~~~~-----------~~~lr~~P~l~~t~~eid~~l~~l  435 (443)
T PRK08297        380 GLMCAFDLPTTA------------DRDEVIRRLW-EEGVLVLPCG-----------ERSIRFRPALTVTTEEIDAAIDAL  435 (443)
T ss_pred             ceEEEEEecCHH------------HHHHHHHHHH-HCCEEEecCC-----------CCeEEEECCccCCHHHHHHHHHHH
Confidence            667778886421            2446777765 8899997732           234677  6667899999999999


Q ss_pred             HHhhhc
Q psy788          119 QTWRNK  124 (126)
Q Consensus       119 ~~~~~~  124 (126)
                      .+++..
T Consensus       436 ~~~l~~  441 (443)
T PRK08297        436 RRALPE  441 (443)
T ss_pred             HHHHHh
Confidence            888753

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.78  Score=35.09  Aligned_cols=98  Identities=14%  Similarity=0.088  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCC----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVIP----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +..+.+.-++-.+++.+.|.++ ++++..|    .++++ -..++..             ...+++..| .++||.+.-|
T Consensus       298 ~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~v-sF~v~~~-------------~~~dv~~~L-~~~gI~vr~g  362 (405)
T COG0520         298 MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIV-SFNVKGI-------------HPHDVATLL-DEKGIAVRAG  362 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEE-EEEeCCC-------------CHHHHHHHH-HhCCeEEEec
Confidence            3556666777777788888877 6777554    34533 3445432             266788875 5888999998


Q ss_pred             CCcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           85 SAFYSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        85 ~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      ......- .....+..+|+|++.  +.++++..++.|.++.
T Consensus       363 ~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~  403 (405)
T COG0520         363 HHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKAL  403 (405)
T ss_pred             cccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            6554210 000123459999995  8888998888887764

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=94.95  E-value=0.15  Score=38.07  Aligned_cols=92  Identities=11%  Similarity=0.028  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCcccC--CCcceE---EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           13 ISEELRPKREILADALDKA-GMVPVI--PDGGYF---MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~-g~~~~~--p~gg~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..+.+.++++.+.+.|.++ |+++..  +.++.-   .-+.+......+         +..++++.| .+.++.|.+-..
T Consensus       264 ~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~---------~~~~l~~~L-~~~~~~I~~r~~  333 (363)
T TIGR01437       264 SGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGM---------TAADVVQAL-RQGEPAIYTRGY  333 (363)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCC---------CHHHHHHHH-hcCCCCEEEeee
Confidence            3445666777889999887 777643  222221   112232100001         467888886 567755555333


Q ss_pred             cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                      |.       ..+.+|+++.. ++++++..+++|.++
T Consensus       334 ~~-------~~~~~~l~~~~~~~~e~~~~~~~l~~~  362 (363)
T TIGR01437       334 KA-------NEGIIEIDPRSVTGGQLDIIVERIREI  362 (363)
T ss_pred             ee-------cCCeEEEEeecCCHHHHHHHHHHHHHh
Confidence            43       25688999987 788888888888765

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PLN02452 phosphoserine transaminase

Probab=94.30  E-value=1.2  Score=33.57  Aligned_cols=94  Identities=14%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CC-cc-cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKA-GM-VP-VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~-~~-~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.+.++++++.+++.+.|++. |+ .. ..|  ...+-+-..++..    +        ...+|.+.+ +++|+...||
T Consensus       264 l~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~----~--------~~~~f~~~~-~~~g~~~~~G  330 (365)
T PLN02452        264 LKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS----E--------LEAEFVKEA-AKAGMVQLKG  330 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc----h--------hHHHHHHHH-HHCCCcccCC
Confidence            6788899999999999999886 66 11 122  2444444455432    1        366888884 7999999998


Q ss_pred             CCcccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHhhhcC
Q psy788           85 SAFYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTWRNKN  125 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~~~~~  125 (126)
                      ..-.       + + +|+|.= . +.+.++.-++-+.++.++|
T Consensus       331 ~r~~-------g-g-~R~s~yna~~~~~v~~L~~~m~~f~~~~  364 (365)
T PLN02452        331 HRSV-------G-G-MRASIYNAMPLAGVEKLVAFMKDFQAKH  364 (365)
T ss_pred             cccc-------C-c-eEEECcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5331       2 3 999874 3 7777777777777766654

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=94.25  E-value=1.4  Score=33.75  Aligned_cols=68  Identities=16%  Similarity=0.104  Sum_probs=42.8

Q ss_pred             ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHH
Q psy788           41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSIL  118 (126)
Q Consensus        41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l  118 (126)
                      |+++|+++.......+     +......+.+.+ .+.||.+.+.   +.      ..+.+||.  +..+++++++++++|
T Consensus       351 Gl~~~iel~~~~~~~~-----~~~~~~~~~~~~-~~~Gvl~~~~---g~------~~~~~r~~Ppl~it~~~id~~~~~l  415 (425)
T PRK07495        351 GFMNAVEFNDADSGLP-----SAEFANRVRLKA-LEKGLILLTC---GV------HGNVIRFLAPITIQDDVFAEALDIL  415 (425)
T ss_pred             ceEEEEEEecCCCCCc-----cHHHHHHHHHHH-HHCCeEEeec---CC------CCCEEEEeCCCccCHHHHHHHHHHH
Confidence            8999999954210000     000123466664 4789998653   11      13567775  445889999999999


Q ss_pred             HHhhh
Q psy788          119 QTWRN  123 (126)
Q Consensus       119 ~~~~~  123 (126)
                      .++++
T Consensus       416 ~~~l~  420 (425)
T PRK07495        416 EASIL  420 (425)
T ss_pred             HHHHH
Confidence            98875

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=94.17  E-value=0.81  Score=34.14  Aligned_cols=49  Identities=8%  Similarity=0.124  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..++.+.| .+.||.+...  .+.      ..+++|++++.  ++++++..++.|.++++
T Consensus       299 ~~~~~~~L-~~~gi~v~~~--~~~------~~~~iRis~~~~~t~edid~l~~~L~~~~~  349 (370)
T PRK05937        299 EQELYSKL-VETGIRVGVV--CFP------TGPFLRVNLHAFNTEDEVDILVSVLATYLE  349 (370)
T ss_pred             HHHHHHHH-HHCCeeEEee--CCC------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            45677765 5889987642  111      24689999984  88899999998887764

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=94.04  E-value=1.3  Score=33.95  Aligned_cols=103  Identities=18%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCc-ccccccCCC-CCchhhHHHHHHHHHhCCeeEeCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQL-RPMLRLDTE-SDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +++.++++.....++.+.+.+.++++.. ..+.|.|+- +.+... ..... +.. .+......+...|. ++||.+.|.
T Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~-i~l~~~~~~~~~-~~~~~~~~~~~~i~~~l~-~~Gv~v~~~  395 (426)
T PRK00062        319 GFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFG-LFFTDEPVTNYA-DAKKSDTERFARFFHAML-DEGVYLAPS  395 (426)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEE-EEEecCCCcchh-hhccccHHHHHHHHHHHH-HCCeEeecC
Confidence            4666777777776676666666666554 345666554 444321 00000 000 00001246777764 889998773


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      . +          +-+++++..++++++++++.|.+++++
T Consensus       396 ~-~----------~~~~~~~~~t~~ei~~~~~~l~~~l~~  424 (426)
T PRK00062        396 Q-F----------EAGFVSAAHTDEDIEKTLEAARKAFAA  424 (426)
T ss_pred             C-c----------CceeeeccCCHHHHHHHHHHHHHHHHh
Confidence            1 1          124677777899999999999888753

>PLN02955 8-amino-7-oxononanoate synthase

Probab=93.94  E-value=1.6  Score=34.22  Aligned_cols=52  Identities=8%  Similarity=0.080  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      ..++++.|. ++||.+.+.......    .+...+|++++.  ++++|+..++.|.++.
T Consensus       406 a~~~~~~L~-~~Gi~v~~i~yPtVP----~g~~rLRi~lsA~Ht~edId~lv~~L~~~~  459 (476)
T PLN02955        406 ALKASRYLL-KSGFHVMAIRPPTVP----PNSCRLRVTLSAAHTTEDVKKLITALSSCL  459 (476)
T ss_pred             HHHHHHHHH-HCCCEEEEECCCCCC----CCCceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence            457788864 889999986544332    345689999985  8899999999987654

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=93.06  E-value=2.2  Score=31.73  Aligned_cols=89  Identities=17%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccC----C-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVI----P-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~----p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      +++++++..+..+.+.+.|.+. ++.+..    + .++ .+-+.++..             +..++...|. +.||.+..
T Consensus       273 ~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-i~~~~~~~~-------------~~~~~~~~L~-~~~I~~~~  337 (371)
T PF00266_consen  273 IERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPS-IVSFNLPGS-------------DADDVVKYLE-ERGIAVST  337 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTT-EEEEEETTS-------------SHHHHHHHHH-HHTEEEEE
T ss_pred             cccchhhhhhHHHHHHhhhhcCCceeEeeecccccccc-eEEEeecCC-------------CHHHHHHHHh-hcCEEEec
Confidence            5667777888888888888887 444422    2 344 344555532             3667778765 55999999


Q ss_pred             CCCcccCc-ccCCCCCeEEEEeeC--ChhHHHH
Q psy788           84 PSAFYSDE-HKHLGENLIRYCFFK--KDETLRE  113 (126)
Q Consensus        84 g~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~  113 (126)
                      |....... ......+.+|+|++.  +.+++++
T Consensus       338 G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~  370 (371)
T PF00266_consen  338 GSACAGPSLDILGMGGVIRVSLHYYNTEEDVDR  370 (371)
T ss_dssp             STTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHH
T ss_pred             cCcccHHHHHHhCCCCEEEEeccCCCCHHHHhh
Confidence            77554100 000124899999985  6666654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR02006 IscS cysteine desulfurase IscS

Probab=92.93  E-value=1.8  Score=32.65  Aligned_cols=99  Identities=13%  Similarity=0.096  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-C--c-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIP-D--G-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p-~--g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .++....+++++.++.+.+.|.++ ++.+..+ +  . +. +.+.++..             +..++...+   .++.+.
T Consensus       259 ~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~-~~v~f~~~-------------~~~~~~~~l---~~i~v~  321 (402)
T TIGR02006       259 EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGN-LNVSFNYV-------------EGESLIMAL---KDLAVS  321 (402)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCe-EEEEEeCc-------------CHHHHHHhc---CCEEEe
Confidence            356677788888888888888765 4544321 1  0 11 12333321             233454443   478888


Q ss_pred             CCCCcccCcc------------cCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEH------------KHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~------------~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .|........            .....+.+|+|++.  +.++++..++.|.++++
T Consensus       322 ~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~  376 (402)
T TIGR02006       322 SGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAID  376 (402)
T ss_pred             chhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            8876533110            00013789999995  88889999988877654

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR01814 kynureninase kynureninase

Probab=92.71  E-value=3.4  Score=31.22  Aligned_cols=86  Identities=9%  Similarity=0.054  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-----CCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788           10 FYTISEELRPKREILADALDKA-----GMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-----g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV   79 (126)
                      ++.++++.++..+.+.+.|.+.     ++.+..|.     ++ .+.+.++ .             +..++.+.| .++||
T Consensus       307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~-~v~~~~~-~-------------~~~~~~~~L-~~~gi  370 (406)
T TIGR01814       307 MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGC-QLSLTHP-V-------------PGKAVFQAL-IKRGV  370 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCC-eEEEEec-C-------------CHHHHHHHH-HHCCE
Confidence            3555666666666777777653     25554432     23 3344454 1             245677776 57799


Q ss_pred             eEeCCCCcccCcccCCCCCeEEEEee--C-ChhHHHHHHHHHHHhh
Q psy788           80 QGIPPSAFYSDEHKHLGENLIRYCFF--K-KDETLREASSILQTWR  122 (126)
Q Consensus        80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~--~-~~e~i~~~~~~l~~~~  122 (126)
                      .+.+    .       ..+.+|+|++  . +.++++..++.|.+++
T Consensus       371 ~v~~----~-------~~~~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       371 IGDK----R-------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             EEec----c-------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence            8642    1       2468999984  3 8889999999887654

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=92.63  E-value=2.3  Score=32.42  Aligned_cols=82  Identities=22%  Similarity=0.306  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc-----cCC
Q psy788           21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH-----KHL   95 (126)
Q Consensus        21 ~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-----~~~   95 (126)
                      -++|.+.|.+.|+++..|.||==++++..+....++   .+.. ..+.|+-.|..+.||..+--..|....+     +++
T Consensus       336 v~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip---~eqF-paqala~ely~e~GiRavElG~~~~~rd~ktg~q~~  411 (471)
T COG3033         336 VQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIP---AEQF-PAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHP  411 (471)
T ss_pred             HHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCC---hhhC-cHHHHHHHHHHHhCeeeeeeeceecccCCCccccCC
Confidence            356788888889999999999889999765321110   0111 3667888889999998776665654211     111


Q ss_pred             -CCCeEEEEeeC
Q psy788           96 -GENLIRYCFFK  106 (126)
Q Consensus        96 -~~~~~Rl~~~~  106 (126)
                       .-..+|+++.+
T Consensus       412 ~~~elvRltipR  423 (471)
T COG3033         412 PPAELVRLTIPR  423 (471)
T ss_pred             CchheeeEeccc
Confidence             12678998874

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=92.38  E-value=2.6  Score=32.34  Aligned_cols=56  Identities=13%  Similarity=0.087  Sum_probs=38.2

Q ss_pred             ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHH
Q psy788           41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSIL  118 (126)
Q Consensus        41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l  118 (126)
                      |+++.++++..    +        ....+.+.|. +.||.+.|..           .+.+|++.  ..++++++++++.|
T Consensus       373 G~~~~i~~~~~----~--------~~~~~~~~l~-~~Gvl~~~~g-----------~~~lr~~P~l~~t~~eid~~l~~l  428 (431)
T TIGR03251       373 GLMCAFDLPST----A--------DRDEVIRQLY-REGVLLLGCG-----------ERSIRFRPPLTVTREEIDAAIDAI  428 (431)
T ss_pred             ceeEEEEeCCH----H--------HHHHHHHHHH-hCCeEEecCC-----------CCeEEEECCccCCHHHHHHHHHHH
Confidence            66777777642    0        2446777765 8899987631           23467654  45899999999988


Q ss_pred             HH
Q psy788          119 QT  120 (126)
Q Consensus       119 ~~  120 (126)
                      .+
T Consensus       429 ~~  430 (431)
T TIGR03251       429 RR  430 (431)
T ss_pred             Hh
Confidence            65

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=92.13  E-value=4.2  Score=31.80  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCC-cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPD-GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~-gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +..+++..++.+.+.+.|.+.|+++..+. -.-.+++++...+  +         +..++... +...||.+..+..++.
T Consensus       313 ~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~g--i---------~~~~~~~~-L~~~~I~~nk~~~p~~  380 (475)
T PLN03226        313 KAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLG--L---------TGSRVEKV-LDLAHITLNKNAVPGD  380 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCC--C---------CHHHHHHH-HHHCCCEECCCCCCCC
Confidence            45677888888888888887788875431 1345667774322  2         35566666 4689999988765543


Q ss_pred             CcccCCCCCeEEEE------eeCChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYC------FFKKDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~------~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ..  ...+..+|++      .+..++++++..+.|.++++
T Consensus       381 ~~--~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        381 SS--ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             cc--cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            11  1234568883      23366777777777766654

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=92.08  E-value=3.3  Score=32.35  Aligned_cols=98  Identities=15%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CCCCccc-Ccc---c-CC
Q psy788           22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PPSAFYS-DEH---K-HL   95 (126)
Q Consensus        22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg~~f~~-~~~---~-~~   95 (126)
                      .+|.+.|.+.|+++..|.||--++++.......++   ..+ .....++-+|..+.||.-+ -|+.... +++   + .+
T Consensus       326 ~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~---~~~-~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~  401 (460)
T PRK13237        326 RYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLP---QDQ-FPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYP  401 (460)
T ss_pred             HHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCC---ccc-ChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCC
Confidence            45666676669999999999888898765321111   011 1367888888889999754 4443222 211   1 11


Q ss_pred             CCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           96 GENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        96 ~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      .-..+|+++.+   +.+.++-..+.|..+.+
T Consensus       402 ~~el~rlaiprr~yt~~h~~~v~~~~~~~~~  432 (460)
T PRK13237        402 KLELVRLTIPRRVYTYAHMDVVADSVIKLYK  432 (460)
T ss_pred             ccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence            13689999985   55666666666665544

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=90.69  E-value=5.1  Score=29.23  Aligned_cols=98  Identities=10%  Similarity=-0.010  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc-----ceEEEEeeCCc-ccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIPDG-----GYFMVADWTQL-RPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g-----g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      .++.+.++.+++.+.+.+.|.++ |+++..+..     ...+.+.++.. +  .         +..++.+.| .++||.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~v~~~L-~~~gI~~  296 (352)
T cd00616         229 KLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAG--E---------SRDELIEAL-KEAGIET  296 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCC--C---------CHHHHHHHH-HHCCCCe
Confidence            34556666677777788888776 666543321     23333445420 1  1         356788886 5779965


Q ss_pred             eCCCCcccCcc---------cCC-------CCCeEEEEeeC--ChhHHHHHHHHH
Q psy788           82 IPPSAFYSDEH---------KHL-------GENLIRYCFFK--KDETLREASSIL  118 (126)
Q Consensus        82 ~pg~~f~~~~~---------~~~-------~~~~~Rl~~~~--~~e~i~~~~~~l  118 (126)
                      ...........         ...       ..+.+|+++..  ++++++.-++.|
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l  351 (352)
T cd00616         297 RVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEAL  351 (352)
T ss_pred             eeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHh
Confidence            43211100000         000       12689999885  777777766655

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=90.32  E-value=4  Score=31.59  Aligned_cols=44  Identities=16%  Similarity=0.127  Sum_probs=32.3

Q ss_pred             HHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        68 ~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .|...|+ ++||.+.|+ .|         +.++ +|.+.+++.|+..++.+.++++
T Consensus       384 ~~~~~~l-~~GV~l~ps-~~---------ea~f-lS~ahte~di~~~~~a~~~~~~  427 (432)
T COG0001         384 KFFHHLL-NRGVYLAPS-QF---------EAGF-LSTAHTEEDIDRTLEAADEAFK  427 (432)
T ss_pred             HHHHHHH-hCCcccCCc-cc---------ccee-eecccCHHHHHHHHHHHHHHHH
Confidence            4666655 889999984 23         3445 7888888999998888876655

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=89.32  E-value=8.9  Score=29.95  Aligned_cols=98  Identities=14%  Similarity=0.157  Sum_probs=61.7

Q ss_pred             HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC-CCCcccCc-c---c-CC
Q psy788           22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP-PSAFYSDE-H---K-HL   95 (126)
Q Consensus        22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p-g~~f~~~~-~---~-~~   95 (126)
                      .+|.+.|.+.|+++..|.||=-++++.......++   ..+ .....++-+|..+.||.-+- |+.....+ +   + .+
T Consensus       319 ~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~---~~~-~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~  394 (450)
T TIGR02618       319 RYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIP---QDQ-FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRP  394 (450)
T ss_pred             HHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCC---hhh-ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCC
Confidence            35677777779999889999888898865321111   111 13678888888899997544 55433211 1   1 11


Q ss_pred             CCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           96 GENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        96 ~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      .-..+|+++.+   +.+.++-..+.|..+.+
T Consensus       395 ~~el~rlaiprr~yt~~h~~~v~~~~~~~~~  425 (450)
T TIGR02618       395 KLELVRLTIPRRVYTYAHMDVVADGIIKLYK  425 (450)
T ss_pred             ccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence            13689999985   55666666676665544

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK07678 aminotransferase; Validated

Probab=88.76  E-value=9.5  Score=29.55  Aligned_cols=52  Identities=12%  Similarity=-0.089  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      ..+...+ .++||.+.|.......     ..+.+|++-..  ++++|+++++.|.+++++
T Consensus       396 ~~i~~~l-~~~Gv~~~~~g~~v~~-----~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~  449 (451)
T PRK07678        396 ASVVAAC-KEKGLIIGKNGDTVAG-----YNNVLTLSPPLVISSEEIAFIVGTLKTALER  449 (451)
T ss_pred             HHHHHHH-HHCCcEEeecCccccC-----CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            4566665 4889998763211111     24678887654  899999999999988763

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=88.27  E-value=11  Score=29.52  Aligned_cols=51  Identities=10%  Similarity=0.107  Sum_probs=34.4

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..++++.|. +.|+.+.  ..++..    ...+.+|++++.  +.++|+..++.|.++.+
T Consensus       395 ~~~v~~~L~-~~Gi~~~--~~~~p~----~~~~~l~is~~e~~t~edid~l~~~l~~i~~  447 (481)
T PRK04366        395 TLDIAKRLL-DYGFHPP--TIYFPL----IVPEALMIEPTETESKETLDAFIAAMKQIAE  447 (481)
T ss_pred             HHHHHHHHH-HCCccCC--cccccc----ccCCeEEEcccCCCCHHHHHHHHHHHHHHHH
Confidence            567888864 7888744  222221    125689999974  77888888888776644

>PRK06541 hypothetical protein; Provisional

Probab=88.18  E-value=10  Score=29.46  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcc---cCCCcceEEEEeeCCcccccccCCCCCchh---hHHHHHHHHHhCCeeEeCC
Q psy788           12 TISEELRPKREILADALDKA-GMVP---VIPDGGYFMVADWTQLRPMLRLDTESDKYE---DFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~-g~~~---~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+....+++.+.+.+.|+++ ...+   .... |+++-+++...... ..+......+   ...+...| .++||.+.|.
T Consensus       346 ~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~-Gl~~~ie~~~~~~~-~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~  422 (460)
T PRK06541        346 GLLDHVRDNEPAFRATLEKLLDLPIVGDVRGD-GYFYGIELVKDKAT-KETFTDDESERLLRGFLSPAL-FEAGLYCRAD  422 (460)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCccc-ccCCcchhhhhhHHHHHHHHH-HhCCeEEEec
Confidence            45667778888888888765 2222   3344 44556776321000 0000000000   12455665 4889999872


Q ss_pred             CCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      . .        +.+.+||+-.  .+++++++++++|.+++.
T Consensus       423 ~-~--------g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~  454 (460)
T PRK06541        423 D-R--------GDPVVQLAPPLISGQEEFDEIEQILRSVLT  454 (460)
T ss_pred             C-C--------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            1 1        2467899887  489999999999988775

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=87.96  E-value=10  Score=28.95  Aligned_cols=45  Identities=11%  Similarity=-0.031  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      ...+...| .++||.+.|.            .+.+|++..  .++++|+..++.|.++++
T Consensus       375 ~~~l~~~l-~~~Gv~v~~~------------~~~lR~~p~l~~t~edId~~v~~l~~al~  421 (423)
T PRK05964        375 GPALRAFA-LERGVLLRPL------------GNTIYLMPPYIITAEELDRITDAIVEVAD  421 (423)
T ss_pred             HHHHHHHH-HHCCeEEEec------------CCEEEEeCCcccCHHHHHHHHHHHHHHHh
Confidence            44677776 4889998762            135899866  589999999999988775

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=87.58  E-value=9.5  Score=28.20  Aligned_cols=87  Identities=10%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhC-CCccc---CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCC
Q psy788           20 KREILADALDKA-GMVPV---IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHL   95 (126)
Q Consensus        20 r~~~l~~~l~~~-g~~~~---~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~   95 (126)
                      +.+.+.+.|.++ |+++.   .+... ++.++.+...  ..  ......+..++.+.|. ++||.+.    + ..     
T Consensus       269 ~~~~l~~~L~~l~g~~v~~~~~~~~n-~~~~~~~~~~--~~--~~~~~~~~~~~~~~L~-~~gI~~~----~-~~-----  332 (361)
T cd06452         269 KARWFVAELEKIEGIKQLGEKPKNHD-LMFFETPSFD--EI--AKKHKRRGYFLYSELK-KRGIHGI----K-PG-----  332 (361)
T ss_pred             HHHHHHHHHhcCCCeEEECCCCCCCc-eEEEEcCCcc--hh--hhhccccchhHHHHHH-HcCceEE----c-CC-----
Confidence            346778888887 77764   22333 4445554210  00  0000001336888874 6799842    1 21     


Q ss_pred             CCCeEEEEee-CChhHHHHHHHHHHHhh
Q psy788           96 GENLIRYCFF-KKDETLREASSILQTWR  122 (126)
Q Consensus        96 ~~~~~Rl~~~-~~~e~i~~~~~~l~~~~  122 (126)
                      ..+++|++.. .++++++..++.|.++.
T Consensus       333 ~~~~~ri~~~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         333 LTRYFKLSTYGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             CceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            2468999983 37778888888887543

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=87.43  E-value=11  Score=28.79  Aligned_cols=94  Identities=14%  Similarity=0.046  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceE----EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYF----MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++..-+++++..+.+.+.+...|++... +-+++    ..+..|..   +         ++.++...++++.|+.+.+|.
T Consensus       263 le~r~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~tvta~~~P~g---~---------~~~~~~~~~~~~~g~~i~gg~  329 (383)
T COG0075         263 LEARIARHRRLAEALRAGLEALGLELFA-DPERRSPTVTAIKVPEG---V---------DDKKVRRALLKEYGVEIAGGQ  329 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcccc-CcccCCCceEEEECCCC---C---------CcHHHHHHHHHhCCEEecccc
Confidence            5667788888888999999888877644 22222    22334432   1         233333466777799998875


Q ss_pred             CcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .-.       ....|||+. +. ..+.+..++..|..+++
T Consensus       330 ~~l-------~gkifRIGhMG~~~~~dv~~~l~ale~~L~  362 (383)
T COG0075         330 GPL-------KGKIFRIGHMGNVRPEDVLAALAALEAALR  362 (383)
T ss_pred             ccc-------CccEEEEecCccCCHHHHHHHHHHHHHHHH
Confidence            332       246899976 43 77888889888887776

>KOG1359|consensus

Probab=86.67  E-value=11  Score=28.08  Aligned_cols=53  Identities=15%  Similarity=0.003  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ...++++|+ +.|+.|.-.+..-..    +++..+|+.++.  +++.++..++.+.+..+
T Consensus       357 A~~~ad~lL-k~Gi~Vigfs~PvVP----~gkariRVqiSAaHt~edid~~i~Af~~vgr  411 (417)
T KOG1359|consen  357 ASKMADELL-KRGIYVIGFSYPVVP----KGKARIRVQISAAHTEEDIDRLIEAFSEVGR  411 (417)
T ss_pred             HHHHHHHHH-hcCceEEeecCCcCC----CCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence            567889987 789999986654432    366778888874  88999999998877654

>KOG1360|consensus

Probab=85.83  E-value=15  Score=28.64  Aligned_cols=94  Identities=5%  Similarity=-0.049  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      +.+|+.-+++-.++.+.|.+.|+++.+...- .+=+.+.+..            -..+.++.|+.+.+|.|..-.+....
T Consensus       426 ~~lR~~hqrnv~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~------------l~~~~sd~Li~~h~iYvQaINyPTV~  492 (570)
T KOG1360|consen  426 RVLRRQHQRNVKYVKQLLMELGIPVIPNPSH-IIPVRVGDAA------------LAKQASDILISKHNIYVQAINYPTVA  492 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCCcc-eeeeeccCHH------------HHHHHHHHHHHhcCeEEEeccCCccc
Confidence            4567777888889999999999988654443 2223343211            25578888999999999987654433


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                          .++..+||+=+.  +++.++..++.|...
T Consensus       493 ----rG~E~LRiaPTP~HT~~mm~~lv~~l~~v  521 (570)
T KOG1360|consen  493 ----RGTERLRIAPTPHHTPQMMNILVNALLDV  521 (570)
T ss_pred             ----ccceeeecCCCCCCCHHHHHHHHHHHHHH
Confidence                356778887663  667777777666544

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=85.76  E-value=14  Score=28.44  Aligned_cols=102  Identities=11%  Similarity=-0.038  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccc--cCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLR--LDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+...++++.+.+.+.|+++    ++....-.-|+++-+++......-+  .+...+......+...+ .++||.+.|..
T Consensus       325 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~~  403 (442)
T TIGR00709       325 NLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGAC-FENGLLLETGG  403 (442)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHH-HHCCeEEeecC
Confidence            34456666666676666653    2222222346677787743210000  00000000123455654 48899987632


Q ss_pred             CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      .         ..+.+|+.-+  .++++++++++++.+++.
T Consensus       404 ~---------~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~  434 (442)
T TIGR00709       404 R---------EGEVFRLLCPITIDQEECEEGISRFKQAVE  434 (442)
T ss_pred             C---------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            1         1356776555  489999999999988765

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=85.63  E-value=14  Score=28.22  Aligned_cols=88  Identities=15%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           13 ISEELRPKREILADALDKA----GMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~----g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+..++.-+.+.+.|+++    ++. ...+. |+++-+++....   .       .....+.+.+ .++||.+.|.   
T Consensus       308 l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~-Gl~~~i~~~~~~---~-------~~a~~i~~~l-~~~Gvlv~~~---  372 (408)
T PRK04612        308 IAANVARQSAALRAGLEALNAEFGVFAQVRGR-GLMLGAVLAPAH---A-------GQAGAILDLA-AEHGLLLLQA---  372 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecc-ceEEEEEecCch---h-------hHHHHHHHHH-HHCCeEEeeC---
Confidence            3444444455555555443    221 22333 566667764210   0       0245677775 5889999762   


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                              +++.+|+.-.  .+++++++++++|.+.+.
T Consensus       373 --------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~  402 (408)
T PRK04612        373 --------GPDVLRFVPALNLTDAELADGLARLRLALA  402 (408)
T ss_pred             --------CCCEEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence                    2367898754  488999999999988775

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=85.47  E-value=3.6  Score=30.88  Aligned_cols=89  Identities=13%  Similarity=0.067  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-C-Ccc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHH---------HHHHhC
Q psy788           10 FYTISEELRPKREILADALDKA-G-MVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAK---------WMTKNV   77 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g-~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~   77 (126)
                      +....++-.++...+.++|+++ . ..+ .+|.||++.+.- ...    +        ....|..         .|-...
T Consensus       247 L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~-~~~----~--------~~~~f~~~l~~~~~~~slG~~~  313 (364)
T PRK07269        247 LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKV-ADE----T--------RIPHILNSLKVFTFAESLGGVE  313 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEE-CCH----H--------HHHHHHHhCCcceEccCCCCcC
Confidence            4555566677778888999887 3 334 478888766553 211    0        1222322         222234


Q ss_pred             CeeEeCCCCcccC--cc----cCCCCCeEEEEeeC-ChhHH
Q psy788           78 KLQGIPPSAFYSD--EH----KHLGENLIRYCFFK-KDETL  111 (126)
Q Consensus        78 gV~v~pg~~f~~~--~~----~~~~~~~~Rl~~~~-~~e~i  111 (126)
                      .+.+.|++.+...  .+    ....++.+|||++. +.++|
T Consensus       314 sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dl  354 (364)
T PRK07269        314 SLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDL  354 (364)
T ss_pred             eEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHH
Confidence            5667787655331  10    01236799999998 44433

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=84.33  E-value=16  Score=27.74  Aligned_cols=98  Identities=10%  Similarity=0.022  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CcccCC--C--cceEEEEeeCCcccc-cccCCCCCc-hh-hHHHHHHHHHhCCeeE
Q psy788           10 FYTISEELRPKREILADALDKAG-MVPVIP--D--GGYFMVADWTQLRPM-LRLDTESDK-YE-DFKFAKWMTKNVKLQG   81 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p--~--gg~~~~i~~~~~~~~-~~~~~~~~~-~~-~~~~~~~l~~~~gV~v   81 (126)
                      ++.+.++++++.+.+.+++++.| +.+...  +  +-.-..+.++..... .++    +. -+ ..+|.+.| .+.||.+
T Consensus       261 le~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~----~~~~~~~~~~~~~l-~~~gi~i  335 (374)
T TIGR01365       261 LKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDE----DAQADFAKELISTL-EKEGVAY  335 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcccccccc----chhhHHHHHHHHHH-HHCCEEE
Confidence            77888899999999999999887 555432  1  232344455332100 000    00 00 34676665 5779999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHH
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQ  119 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~  119 (126)
                      .||.  +..     ....|||+- +. +.++++..++.|.
T Consensus       336 ~~G~--~~~-----~~~~fRIg~~G~i~~~di~~l~~~l~  368 (374)
T TIGR01365       336 DIGS--YRD-----APSGLRIWCGATVEKSDLECLCPWLD  368 (374)
T ss_pred             eccc--ccc-----CCCceEEecCCcCCHHHHHHHHHHHH
Confidence            9875  322     236899965 44 7788887777663

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PLN02724 Molybdenum cofactor sulfurase

Probab=84.27  E-value=23  Score=29.63  Aligned_cols=26  Identities=12%  Similarity=-0.007  Sum_probs=21.3

Q ss_pred             CCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           97 ENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        97 ~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      .+.+|+||+.  +.++++..++-|.+..
T Consensus       459 ~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        459 TGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             cceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence            3889999995  8888998888887643

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=84.17  E-value=17  Score=27.95  Aligned_cols=83  Identities=12%  Similarity=0.053  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ..+...+..-+|-+.|.+.|.+.|+++.. .--+-.+|+++...+  +         +..+..+. +.+.||.+-.-...
T Consensus       297 ~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~--~---------~g~~a~~~-Le~~gI~vnkn~iP  364 (399)
T PF00464_consen  297 EFKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFG--I---------DGKEAEKA-LEEAGIIVNKNTIP  364 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGT--S----------HHHHHHH-HHHTTEE-EEE--T
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccc--c---------chHHHHHH-HHhcCeeecccccC
Confidence            34667777778888999999988888743 223447788886532  1         24455555 67999998653333


Q ss_pred             ccCcccCCCCCeEEEEee
Q psy788           88 YSDEHKHLGENLIRYCFF  105 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~  105 (126)
                      +...  ...+..+||+-.
T Consensus       365 ~d~~--~~~~sGlRlGT~  380 (399)
T PF00464_consen  365 GDRS--PFVPSGLRLGTP  380 (399)
T ss_dssp             TTST--TTT-SEEEEESH
T ss_pred             CCCC--CCCCCEEEECCH
Confidence            3211  113578999765

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02242 methionine gamma-lyase

Probab=83.92  E-value=17  Score=27.86  Aligned_cols=30  Identities=13%  Similarity=0.130  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIP   38 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p   38 (126)
                      ++....+++.+|++.+.+.|+++++++..|
T Consensus       275 tl~~r~~~~~~~a~~la~~L~~~~~~V~yP  304 (418)
T PLN02242        275 HLSLRMKEHCRRAMEYAKRMKELGLKVIYP  304 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCEEECC
Confidence            455566799999999999999886555433

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=83.59  E-value=18  Score=27.79  Aligned_cols=85  Identities=14%  Similarity=-0.042  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCC-cccC--CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           14 SEELRPKREILADALDKAGM-VPVI--PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~~g~-~~~~--p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ++..+++-+.+.+.|++++. ....  -.-|.++-+.+....            ....+...| .+.||.+.|.   +  
T Consensus       336 ~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~------------~~~~~~~~l-~~~Gv~~~~~---~--  397 (427)
T TIGR00508       336 QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV------------NVEELQKKF-VEQGVWIRPF---G--  397 (427)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc------------CHHHHHHHH-HHCCeEEEec---C--
Confidence            34555555556666655421 1111  112556667764321            245677776 4889998652   1  


Q ss_pred             cccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           91 EHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                             +.+|++..  .++++|++.++.|.+.+.
T Consensus       398 -------~~l~~~ppl~~t~~~id~~~~~l~~~l~  425 (427)
T TIGR00508       398 -------KLIYVMPPYIITTEQLQKLTAALIEALH  425 (427)
T ss_pred             -------CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                   24778665  588999999999988875

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PLN02880 tyrosine decarboxylase

Probab=82.88  E-value=21  Score=28.07  Aligned_cols=91  Identities=8%  Similarity=0.011  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCc-hhhHHHHHHHHHhCCeeEeCCCCcccCcccCC
Q psy788           19 PKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDK-YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHL   95 (126)
Q Consensus        19 ~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~   95 (126)
                      +..+.+.+.|.+. ++.+ .+|+.++.+ .+++...  .+   .... .-..++.++|..+..+.+.+ +.+.       
T Consensus       387 ~lA~~~~~~l~~~~~~el~~~~~~~iv~-Fr~~~~~--~~---~~~~~~~n~~l~~~l~~~g~~~v~~-t~~~-------  452 (490)
T PLN02880        387 KLAKEFEQLVAQDSRFEVVTPRIFSLVC-FRLVPPK--NN---EDNGNKLNHDLLDAVNSSGKIFISH-TVLS-------  452 (490)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCceEEEE-EEEeCCC--CC---hhhHHHHHHHHHHHHHhCCCEEEEE-EEEC-------
Confidence            5555667777665 6776 456666444 3443211  00   0000 00124555654444454444 3332       


Q ss_pred             CCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           96 GENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        96 ~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      +..++|+++..   +.+.++..++.|.+...
T Consensus       453 g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~  483 (490)
T PLN02880        453 GKYVLRFAVGAPLTEERHVTAAWKVLQDEAS  483 (490)
T ss_pred             CEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            46799999974   55788888888766543

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=82.87  E-value=17  Score=27.00  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCc-c-cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKA-GMV-P-VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~-~-~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.+.+++++..+++.+.|.++ |+. . ..|  .++.-+-+.++..  .          .+.++... +.+.|+.+.+|
T Consensus       257 ~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~--~----------l~~~~~~~-~~r~G~~~~~~  323 (355)
T cd00611         257 VEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE--E----------LEKEFLKE-AEAAGMIGLKG  323 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh--h----------hhHHHHHH-HHHCCCcccCC
Confidence            6777888899999999999988 752 2 111  2222233333321  0          12344344 35788875554


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                      ..   .      .+.+|+|+..  +.++++..++.|.++
T Consensus       324 ~~---~------~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         324 HR---S------VGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             Cc---c------cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            32   1      3679999986  888888888887764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=82.82  E-value=20  Score=27.66  Aligned_cols=88  Identities=18%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHhC--CCc-ccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           13 ISEELRPKREILADALDKA--GMV-PVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~--g~~-~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +-+.-+++-+++.+.|+++  .+. +..- .=|+++=+++....            ...++++.+ .++||.+.+.    
T Consensus       305 ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~------------~a~~~~~~~-~~~gvL~~~a----  367 (404)
T COG4992         305 LLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY------------RARDIVRAL-REEGVLVLPA----  367 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc------------cHHHHHHHH-HHCCeEEecC----
Confidence            3444556666777777765  233 2222 33778888886521            256788875 5899998872    


Q ss_pred             cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                             +.+-+||.=.  -+++++++++++|.+++.+
T Consensus       368 -------~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~  398 (404)
T COG4992         368 -------GPNVIRFLPPLVITEEEIDEALDALERALAA  398 (404)
T ss_pred             -------CCCeEEecCCccCCHHHHHHHHHHHHHHHHH
Confidence                   3457888544  4889999999999988874

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=80.90  E-value=24  Score=27.46  Aligned_cols=88  Identities=13%  Similarity=0.063  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHhC--CCc--cc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           14 SEELRPKREILADALDKA--GMV--PV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~~--g~~--~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      ....++.-+.+.+.|+++  ..+  +. .-.-|+++-+++....            ....+...|+ ++||.+.+..   
T Consensus       356 ~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~------------~~~~i~~~l~-~~Gvl~~~~~---  419 (459)
T PRK11522        356 PAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE------------IGYNFASEMF-RQRVLVAGTL---  419 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCch------------HHHHHHHHHH-HCCeEEEecC---
Confidence            344444455555555543  122  11 1133677778876420            2446777764 7899987631   


Q ss_pred             cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      .      ..+.+|+..+  .+++++++.+++|.+++.
T Consensus       420 ~------~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~  450 (459)
T PRK11522        420 N------NAKTIRIEPPLTLTIEQCEQVLKAARKALA  450 (459)
T ss_pred             C------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            1      2467888766  388999999999987765

>PLN02271 serine hydroxymethyltransferase

Probab=80.40  E-value=29  Score=28.09  Aligned_cols=98  Identities=12%  Similarity=0.062  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           11 YTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +...+...+|-+.|.+.|.+.|+++.. .--.-.+|+++...+  +         +... ++..+...||.+.--..++.
T Consensus       434 k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g--~---------~G~~-ae~~Le~~~I~~Nkn~iP~d  501 (586)
T PLN02271        434 KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLG--L---------TGKN-YEKVCEMCHITLNKTAIFGD  501 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccC--C---------CHHH-HHHHHHHcCeEeccccCCCC
Confidence            667777788888999999888888643 222456778886532  1         2333 34456788998765554443


Q ss_pred             CcccCCCCCeEEEEee------CChhHHHHHHHHHHHhh
Q psy788           90 DEHKHLGENLIRYCFF------KKDETLREASSILQTWR  122 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~------~~~e~i~~~~~~l~~~~  122 (126)
                      ..  ...++.+||+-.      ..++++++-.+.|.+++
T Consensus       502 ~~--~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~  538 (586)
T PLN02271        502 NG--TISPGGVRIGTPAMTSRGCLESDFETIADFLLRAA  538 (586)
T ss_pred             CC--CCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            21  124678999643      24455555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
1yiz_A	429	Aedes Aegypti Kynurenine Aminotrasferase Length = 4		2e-37
1yiy_A	429	Aedes Aegypti Kynurenine Aminotransferase Length =		2e-37
3e2z_B	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		7e-24
3e2f_A	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		7e-24
3fvs_A	422	Human Kynurenine Aminotransferase I In Complex With		3e-15
1w7n_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		5e-15
1w7l_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		5e-15
3b46_A	447	Crystal Structure Of Bna3p, A Putative Kynurenine A		4e-10
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		3e-09
2o0r_A	411	The Three-Dimensional Structure Of N-Succinyldiamin		3e-04
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		6e-04

>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429

Iteration: 1
 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 89/119 (74%)
Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF +IS EL  KR+ +A  L + GM P +P GGYFMVADW+ L   + L  E+D  +D
Sbjct: 311 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKD 370
Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
           ++F KWMTK+V LQGIPPSAFYS+ +KHLGE+ +RYCFFKKDE L++A+ IL+ W+  +
Sbjct: 371 YRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGSS 429

>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429

Iteration: 1
 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 89/119 (74%)
Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF +IS EL  KR+ +A  L + GM P +P GGYFMVADW+ L   + L  E+D  +D
Sbjct: 311 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKD 370
Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
           ++F KWMTK+V LQGIPPSAFYS+ +KHLGE+ +RYCFFKKDE L++A+ IL+ W+  +
Sbjct: 371 YRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGSS 429

>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF ++ +EL  KR+ +   L+  G+ P++PDGGYF++AD + L   L  D  SD+  D
Sbjct: 296 ECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYD 354
Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +KF KWMTK+ KL  IP SAF   + K   E L+R+CF KKD TL  A  I + W 
Sbjct: 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAWN 410

>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410

Iteration: 1
 Score =  105 bits (261), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 7   KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
           +CYF ++ +EL  KR+ +   L+  G+ P++PDGGYF++AD + L   L  D  SD+  D
Sbjct: 296 ECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYD 354
Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +KF KWMTK+ KL  IP SAF   + K   E L+R+CF KKD TL  A  I + W 
Sbjct: 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAWN 410

>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYEDF 67
           YF    + ++  R+ +  +L   G+ P+IP G YF++ D +   R M  L    D+  D 
Sbjct: 305 YFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364
Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +F KWM KN  L  IP S FYS  H+   ++ IR+CF K + TL+     L+ W+
Sbjct: 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419

>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYEDF 67
           YF    + ++  R+ +  +L   G+ P+IP G YF++ D +   R M  L    D+  D 
Sbjct: 305 YFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364
Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +F KWM KN  L  IP S FYS  H+   ++ IR+CF K + TL+     L+ W+
Sbjct: 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419

>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYEDF 67
           YF    + ++  R+ +  +L   G+ P+IP G YF++ D +   R M  L    D+  D 
Sbjct: 305 YFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364
Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
           +F KWM KN  L  IP S FYS  H+   ++ IR+CF K + TL+     L+ W+
Sbjct: 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419

>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLR-------PMLRLDTES 61
           YF  + +E   K +I     D+ G+    P+G YF++ D+++++       P   L+   
Sbjct: 328 YFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILN--- 384
Query: 62  DKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
            K +DF+ + W+   + +  IPP+ FY  EH+   ENL+R+   K D  L  A   L+  
Sbjct: 385 -KGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL 443
Query: 122 RN 123
           ++
Sbjct: 444 KD 445

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
           ++  + +  R KR+IL +AL+++ +  +  +G YF++ D++ +  +          +D +
Sbjct: 287 HYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTL----------DDVE 336
Query: 69  FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
           F +W+T+   +  IP S F +D   H    LIR CF KK+ TL  A+  L+
Sbjct: 337 FCQWLTQEHGVAAIPLSVFCADPFPH---KLIRLCFAKKESTLLAAAERLR 384

>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 13  ISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED-FKFAK 71
           +   LR +R+ LA  L + G       G YF+ AD    RP+         Y+D  +F  
Sbjct: 288 LRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCAD---PRPL--------GYDDSTEFCA 336
Query: 72  WMTKNVKLQGIPPSAF------YSDEHKHLGENLIRYCFFKKDETLREA 114
            + + V +  IP SAF       + +   +  +L+R+ F K+D+TL EA
Sbjct: 337 ALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEA 385

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVAD---WTQLRPMLRLDTESDKYE 65
           ++  + E  R +R++LA  L   G+   +P+G YF++A+   W   R             
Sbjct: 275 FYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFR------------- 321
Query: 66  DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
                  + +  ++  IP SAFY ++     ++L R+ F K +E L  A
Sbjct: 322 -------LVEEARVALIPASAFYLEDPP---KDLFRFAFCKTEEELHLA 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	7e-44
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	3e-42
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	6e-42
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	1e-41
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	5e-32
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	8e-32
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	5e-31
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	5e-06
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	2e-05
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	1e-04
1vp4_A	425	Aminotransferase, putative; structural genomics, j	2e-04
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	2e-04
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	2e-04
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	3e-04
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	4e-04
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	8e-04

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score =  147 bits (372), Expect = 7e-44
 Identities = 66/117 (56%), Positives = 87/117 (74%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
           CYF +IS EL  KR+ +A  L + GM P +P GGYFMVADW+ L   + L  E+D  +D+
Sbjct: 312 CYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDY 371

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
           +F KWMTK+V LQGIPPSAFYS+ +KHLGE+ +RYCFFKKDE L++A+ IL+ W+  
Sbjct: 372 RFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 428

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score =  142 bits (361), Expect = 3e-42
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYED 66
            YF    + ++  R+ +  +L   G+ P+IP G YF++ D +  +  M  L    D+  D
Sbjct: 304 SYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYD 363

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
            +F KWM KN  L  IP S FYS  H+   ++ IR+CF K + TL+     L+ W+ +
Sbjct: 364 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 421

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score =  141 bits (358), Expect = 6e-42
 Identities = 52/114 (45%), Positives = 71/114 (62%), Gaps = 1/114 (0%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
           CYF ++ +EL  KR+ +   L+  G+ P++PDGGYF++AD + L   L  D  SD+  D+
Sbjct: 297 CYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYDY 355

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
           KF KWMTK+ KL  IP SAF   + K   E L+R+CF KKD TL  A  I + W
Sbjct: 356 KFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score =  141 bits (358), Expect = 1e-41
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 1   MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP---MLRL 57
           +  A    YF  + +E   K +I     D+ G+    P+G YF++ D+++++        
Sbjct: 320 INDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYP 379

Query: 58  DTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSI 117
           +   +K +DF+ + W+   + +  IPP+ FY  EH+   ENL+R+   K D  L  A   
Sbjct: 380 EEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVER 439

Query: 118 LQTWRNK 124
           L+  ++ 
Sbjct: 440 LKLLKDY 446

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score =  115 bits (290), Expect = 5e-32
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 16/123 (13%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
            +   +   LR +R+ LA  L + G       G YF+ AD   L             +  
Sbjct: 283 AWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLGYD----------DST 332

Query: 68  KFAKWMTKNVKLQGIPPSAFYSD------EHKHLGENLIRYCFFKKDETLREASSILQTW 121
           +F   + + V +  IP SAF         +   +  +L+R+ F K+D+TL EA   L   
Sbjct: 333 EFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVL 392

Query: 122 RNK 124
             +
Sbjct: 393 AER 395

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score =  114 bits (288), Expect = 8e-32
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 20/124 (16%)

Query: 1   MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE 60
           +  A  + ++  + E  R +R++LA  L   G+   +P+G YF++A+             
Sbjct: 267 LKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW--------- 317

Query: 61  SDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120
                    A  + +  ++  IP SAFY ++     ++L R+ F K +E L  A   L  
Sbjct: 318 --------DAFRLVEEARVALIPASAFYLEDP---PKDLFRFAFCKTEEELHLALERLGR 366

Query: 121 WRNK 124
             N 
Sbjct: 367 VVNS 370

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score =  112 bits (282), Expect = 5e-31
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 6   DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYE 65
           +  ++  + +  R KR+IL +AL+++ +  +  +G YF++ D++ +  +          +
Sbjct: 284 EPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTL----------D 333

Query: 66  DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
           D +F +W+T+   +  IP S F +D        LIR CF KK+ TL  A+  L+
Sbjct: 334 DVEFCQWLTQEHGVAAIPLSVFCADPF---PHKLIRLCFAKKESTLLAAAERLR 384

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 15  EELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMT 74
             L  + +   + L+  G+  +  + G F    W  LRP+LR  T      +    + + 
Sbjct: 327 MRLGKRHKHFTNGLEVVGIKCLKNNAGLFC---WMDLRPLLRESTFDS---EMSLWRVII 380

Query: 75  KNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREA 114
            +VKL   P S+F   E         R CF    D T+  A
Sbjct: 381 NDVKLNVSPGSSFECQE-----PGWFRVCFANMDDGTVDIA 416

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 9   YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
           Y     + L+ +++ L   L K+G+  +  + G F    W  +R +LR +T      + +
Sbjct: 326 YIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFC---WVDMRHLLRSNTFEA---EME 379

Query: 69  FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREA 114
             K +   V L   P S+ +  E         R CF    + TL  A
Sbjct: 380 LWKKIVYEVHLNISPGSSCHCTE-----PGWFRVCFANLPERTLDLA 421

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 21/113 (18%)

Query: 12  TISEELRPKREILADALDK--AGMVPV---IPDGGYFMVADWTQLRPMLRLDTESDKYED 66
             +  L PK   + + LD   A        +P GGYF+      +               
Sbjct: 316 KHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFI---SLDVV-------PGTASRV 365

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
            + AK     + L      + Y           +R        E L  A   +
Sbjct: 366 AELAK--EAGIAL--TGAGSSYPLRQD-PENKNLRLAPSLPPVEELEVAMDGV 413

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 22/113 (19%)

Query: 12  TISEELRPKREILADALDK-----AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
              E  R KR ++ +AL++      G+  V  +GG F+   W      L L    D +E 
Sbjct: 315 PTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFI---W------LTLPEGFDTWEM 365

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
           F++A    K V    +P   F   +        +R  F    DE + E    L
Sbjct: 366 FEYA--KRKKVFY--VPGRVFKVYDE---PSPSMRLSFCLPPDEKIVEGIKRL 411

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 12  TISEELRPKREILADALDK---AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
            I +  +P+R+ + +AL++    G+    P+GG F+   W      + L    D  +  +
Sbjct: 344 EIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFI---W------VTLPDGIDSKKMLE 394

Query: 69  FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
            A  + K V    +P  AFY+       +N +R  F +  ++ + E    L
Sbjct: 395 RA--IKKGVAY--VPGEAFYAHRD---VKNTMRLNFTYVDEDKIMEGIKRL 438

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 21/113 (18%)

Query: 12  TISEELRPKREILADALDK-----AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
             +  L PK E + + LD             P GGYF+          + +   +     
Sbjct: 314 KHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFI---S------VDVVPGTAS-RV 363

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
            + AK     + L      + +   H       IR          L  A    
Sbjct: 364 VELAK--EAGIAL--TGAGSSFPL-HNDPNNENIRLAPSLPPVAELEVAMDGF 411

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 12  TISEELRPKREILADALDK---AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
            +    R K + +  ALD+     +    P GG F+   W      + L         F+
Sbjct: 292 RVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFV---W------MELPKGLSAEGLFR 342

Query: 69  FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
            A  + +NV    +P   F+++     GEN +R  +     E + E    L
Sbjct: 343 RA--LEENVAF--VPGGPFFANGG---GENTLRLSYATLDREGIAEGVRRL 386

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 22/114 (19%)

Query: 12  TISEELRPKREILADALDKA---GMVPV---IPDGGYFMVADWTQLRPMLRLDTESDKYE 65
             +  + PK   + + L      G       +P GGYF+            +        
Sbjct: 310 DHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFI---SLDTAE--PVADR----- 359

Query: 66  DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
                      V L   P  A Y           +R        E +R A  ++
Sbjct: 360 --VVKLAEAAGVSL--TPAGATYPAGQD-PHNRNLRLAPTRPPVEEVRTAMQVV 408

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 24/113 (21%)

Query: 12  TISEELRPKREILADALDK--AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKF 69
                 + KR+I+  AL+          P  G F+      L      D           
Sbjct: 303 GALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFV---MFFLPE--GADGI--------- 348

Query: 70  AKWMTKNVKLQGI---PPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
             +  + ++ +G+   P   FY+DE    G+N IR  F     E +      L
Sbjct: 349 -SFANELMEREGVVVVPGKPFYTDES---GKNAIRLNFSRPSKEEIPIGIKKL 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.59
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.58
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.57
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.56
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.56
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.55
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.54
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.54
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.54
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.53
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.52
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.52
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.5
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.5
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.5
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.5
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.5
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.5
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.49
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.49
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.49
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.49
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.49
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.48
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.48
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.47
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.47
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.47
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.47
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.46
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.45
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.45
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.44
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.44
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.43
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.43
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.43
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.42
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.42
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.41
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.41
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.41
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.4
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.4
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.4
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.39
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.09
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.38
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.36
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.36
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.35
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.35
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.33
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.32
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.31
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.27
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.25
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.21
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.2
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.17
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.14
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.14
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.13
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.12
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.11
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.1
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.07
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.04
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.04
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.0
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	98.99
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	98.99
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	98.97
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	98.96
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	98.95
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.94
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	98.94
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	98.93
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	98.93
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	98.91
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	98.91
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	98.9
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.9
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	98.9
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	98.89
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	98.89
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	98.89
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	98.88
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	98.87
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	98.87
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	98.86
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	98.86
3pj0_A	359	LMO0305 protein; structural genomics, joint center	98.85
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	98.85
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	98.85
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	98.83
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	98.82
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	98.82
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	98.81
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	98.8
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	98.79
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	98.79
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	98.78
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	98.77
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	98.74
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.7
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	98.7
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	98.69
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	98.69
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.67
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	98.67
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	98.65
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.64
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	98.64
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	98.61
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.59
1svv_A	359	Threonine aldolase; structural genomics, structura	98.57
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	98.56
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.55
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	98.53
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	98.5
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	98.49
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	98.49
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	98.49
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	98.48
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	98.45
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	98.42
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.32
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	98.3
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	98.28
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.24
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.23
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	98.22
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.22
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	98.21
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	98.21
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	98.21
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	98.2
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	98.16
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	98.15
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	98.15
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	98.13
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	98.12
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	98.11
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	98.11
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	98.1
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	98.1
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	98.04
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	98.02
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.97
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	97.96
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.92
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	97.91
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	97.9
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	97.87
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	97.84
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	97.83
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	97.82
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	97.8
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	97.79
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	97.79
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.78
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	97.77
1z7d_A	433	Ornithine aminotransferase; structural genomics co	97.75
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	97.71
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.7
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	97.65
2fnu_A	375	Aminotransferase; protein-product complex, structu	97.64
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	97.64
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.63
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	97.59
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	97.57
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.57
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	97.5
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	97.49
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.49
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	97.48
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	97.46
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	97.46
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	97.4
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	97.38
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	97.27
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	97.25
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	97.23
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	97.2
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	97.17
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	97.17
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	97.15
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	97.01
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	96.88
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	96.83
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	96.81
3hmu_A	472	Aminotransferase, class III; structural genomics,	96.76
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	96.62
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	96.57
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	96.46
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	96.42
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	96.25
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	96.07
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	96.02
1o69_A	394	Aminotransferase; structural genomics, unknown fun	95.87
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	95.61
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	95.59
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	95.45
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	95.3
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	94.14
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	95.07
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	95.01
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	94.86
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	94.63
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	93.24
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	92.85
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	92.39
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	92.05
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	90.33
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	88.37
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	87.44
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	87.23
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	84.8
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	81.99
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	81.43
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	81.42
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	80.82

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.59  E-value=1.6e-14  Score=108.26  Aligned_cols=101  Identities=20%  Similarity=0.303  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            7 KCYFYTISEELRPKREILADALDKA---GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      +.|++++++.|+++++.+.+.|++.   ++.+..|.||+|+|++++..   .         +..+++..|+ ++||.+.|
T Consensus       339 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~---~---------~~~~l~~~l~-~~gV~v~p  405 (448)
T 3aow_A          339 EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDG---I---------DSKKMLERAI-KKGVAYVP  405 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTT---C---------CHHHHHHHHH-HTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCC---C---------CHHHHHHHHH-HCCcEEEc
Confidence            5789999999999999999999875   68888999999999999752   1         3668888876 56999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |+.|+...   ..++++|++|+. +++++++++++|.++++
T Consensus       406 g~~f~~~~---~~~~~iRls~~~~~~e~i~~~~~~L~~~l~  443 (448)
T 3aow_A          406 GEAFYAHR---DVKNTMRLNFTYVDEDKIMEGIKRLAETIK  443 (448)
T ss_dssp             GGGGSTTC---CCCSEEEEECSSSCTHHHHHHHHHHHHHHH
T ss_pred             chhhcCCC---CCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            99997642   246899999997 78999999999998876

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.58  E-value=1e-14  Score=108.71  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++++++.|+++++.+.+.|++.|+++..|++|+|+|++++ .   .         ++.+++..|+++.||.+.||+.
T Consensus       340 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~---~---------~~~~~~~~l~~~~gI~v~pg~~  406 (449)
T 3qgu_A          340 LKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFP-G---K---------PSWDVFAEILERCNIVTTPGSG  406 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECT-T---S---------CHHHHHHHHHHHHCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECC-C---C---------CHHHHHHHHHHHCCEEEecchH
Confidence            4689999999999999999999988999989999999999998 2   2         3678888887667999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN  125 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~  125 (126)
                      |+..     +++++||+++.+++++++++++|.++++++
T Consensus       407 f~~~-----~~~~iRis~~~~~e~i~~~l~~l~~~~~~~  440 (449)
T 3qgu_A          407 YGPA-----GEGFVRASAFGSRENILEAVRRFKEAYGKR  440 (449)
T ss_dssp             GCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHC--
T ss_pred             hCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            9854     478999999889999999999999988754

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.57  E-value=1.3e-14  Score=107.04  Aligned_cols=120  Identities=31%  Similarity=0.632  Sum_probs=91.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCccccccc-CCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRL-DTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ..+.|++++++.++++++.+.+.|+++|+.+..|++|+|+|++++......+. +...+...+.+++..++.+.||.+.|
T Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~  380 (422)
T 3fvs_A          301 QPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP  380 (422)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeC
Confidence            35679999999999999999999998899988999999999998752110000 00000001557888888788999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+.......+.+++|++|+.+++++++++++|.+++++
T Consensus       381 g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          381 VSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             GGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            99997531101257899999999999999999999988753

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.6e-14  Score=106.88  Aligned_cols=113  Identities=29%  Similarity=0.590  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCC-----CCCchhhHHHHHHHHHhCCeeE
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDT-----ESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +.|++++++.|+++++.+.+.|+++|+++..|+||+|+|++++...  .+...     ..+..++.+++.+|+.++||.+
T Consensus       326 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v  403 (447)
T 3b46_A          326 IGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVK--IPEDYPYPEEILNKGKDFRISHWLINELGVVA  403 (447)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCC--CCTTCCCCGGGSSSCHHHHHHHHHHHHTCEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEeccccc--CccccccccccccCCCHHHHHHHHHHhCCEEE
Confidence            5789999999999999999999988888889999999999997521  00000     0000135688888877789999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      .||+.|+.......+++++|++++.++++|++++++|.++
T Consensus       404 ~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          404 IPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL  443 (447)
T ss_dssp             BCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGGG
T ss_pred             ECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence            9999998542100126899999999899999999999874

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.56  E-value=3.3e-14  Score=105.46  Aligned_cols=99  Identities=13%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++.+++.|+++++.+.+.|.++|+++..|.+|+|+|++++..             ++.+++..|+.+.||.+.||+.
T Consensus       328 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ll~~~gv~v~~g~~  394 (432)
T 3ei9_A          328 LEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQ-------------SSWDVFAEILEKTHVVTTPGSG  394 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECSSSSEEEEECTTS-------------CHHHHHHHHHHHHCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEEECCCC-------------CHHHHHHHHHHHCCEEEeCchH
Confidence            468999999999999999999998888888889999999999832             3667888887778999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+..     +++++|++++.+.+++++++++|.+..+
T Consensus       395 f~~~-----~~~~iRis~~~~~e~l~~~l~rl~~~~~  426 (432)
T 3ei9_A          395 FGPG-----GEGFVRVSAFGHRENILEACRRFKQLYK  426 (432)
T ss_dssp             GCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             hCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHhh
Confidence            9854     4789999998899999999999987655

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.55  E-value=2.5e-14  Score=106.79  Aligned_cols=99  Identities=11%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcc--------------cCCCcceEEEEeeCCcccccccCCCCCchhhHHHH
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVP--------------VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFA   70 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~--------------~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
                      .++|++++++.|+++++.+.+.|+++ |+.+              ..|+||+|+|++++..              +.+++
T Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~--------------~~~~~  376 (427)
T 2hox_A          311 MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--------------EDKDC  376 (427)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--------------GGCSH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc--------------HHHHH
Confidence            35788999999999999999999886 5443              3578899999999741              33566


Q ss_pred             HHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           71 KWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        71 ~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ..++.+.||.+.||+.|+.      +++++|+||+.+++++++++++|.+++++
T Consensus       377 ~~ll~~~gI~v~pg~~f~~------~~~~~Ris~~~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          377 YQTFQNGRINTQNGVGFEA------SSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             HHHHHHTTEECEEGGGGTS------CTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCEEEcCCCccCC------CCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            7777789999999999975      36899999999889999999999998875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.54  E-value=3.3e-14  Score=104.42  Aligned_cols=117  Identities=44%  Similarity=0.811  Sum_probs=88.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ...+.|++++++.++++++.+.+.|+++|+.+..|++|+|+|++++.....++. ...+..++.+++..++.+.||.+.|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~gv~v~~  371 (410)
T 3e2y_A          293 DDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSD-MNSDEPYDYKFVKWMTKHKKLTAIP  371 (410)
T ss_dssp             TSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTT-CCSSCCHHHHHHHHHHHHHSEECEE
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCccEEEEEEchhhhccccc-ccccccCHHHHHHHHHHHcCEEEeC
Confidence            345679999999999999999999998899989999999999999753211110 0001112457888877788999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      |+.|+.......+.+++||+|+.+++++++++++|.++
T Consensus       372 g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~~  409 (410)
T 3e2y_A          372 VSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW  409 (410)
T ss_dssp             GGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHTC
T ss_pred             chhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHhc
Confidence            99997531000136899999999999999999999764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.54  E-value=8.1e-14  Score=102.80  Aligned_cols=101  Identities=18%  Similarity=0.278  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.++++++.+.+.|+++|+++..|+||+|+|++++..   .         +..+++..|+.+.||.+.||+.
T Consensus       302 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~---~---------~~~~l~~~l~~~~gi~v~~g~~  369 (404)
T 2o1b_A          302 DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPG---Y---------DSEQFEQFLVQEKSILVAPGKP  369 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSEEEEECCTT---C---------CHHHHHHHHHHHHCEECEESGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcceEEEEeCCCC---C---------CHHHHHHHHHHHCCEEEeCchh
Confidence            578999999999999999999998888888899999999999742   1         3567888877678999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+..     .++++|++++.+++++++++++|.+++++
T Consensus       370 f~~~-----~~~~iRis~~~~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          370 FGEN-----GNRYVRISLALDDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             GCGG-----GTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred             hCcC-----CCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            9753     36899999998888999999999988764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.54  E-value=2.8e-14  Score=104.48  Aligned_cols=100  Identities=18%  Similarity=0.391  Sum_probs=84.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ...|++++++.|+++++.+.+.|+++|+++..|+||||+|++++..+  .         +..+++..|. ++||.+.||+
T Consensus       285 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~--~---------~~~~l~~~l~-~~gv~v~~g~  352 (385)
T 1b5p_A          285 SRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIA--P---------DEVRAAERLL-EAGVAVVPGT  352 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTC--S---------SHHHHHHHHH-HTTEECEESG
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecCCCC--C---------CHHHHHHHHH-HCCeEEeccc
Confidence            45789999999999999999999888888889999999999997422  1         3668888876 8899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .|+.       ++++|+||+.+++.+++++++|.+++++
T Consensus       353 ~f~~-------~~~iRis~~~~~~~i~~~l~~l~~~l~~  384 (385)
T 1b5p_A          353 DFAA-------FGHVRLSYATSEENLRKALERFARVLGR  384 (385)
T ss_dssp             GGTC-------TTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred             ccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            9963       4799999999889999999999887653

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.52  E-value=6.2e-14  Score=106.53  Aligned_cols=111  Identities=12%  Similarity=0.126  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +++.+++.|+++++.+.+.|+++ |+++..|+||||+|++++.....+.........++..++..++.+.||.+.||+.|
T Consensus       380 ~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f  459 (498)
T 3ihj_A          380 EKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGF  459 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCccc
Confidence            34678899999999999999988 89999999999999987532100000000000123333666777899999999999


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +..    .+++++|++|+.+++++++++++|.++++
T Consensus       460 ~~~----~~~~~~Ris~~~~~e~l~~~i~~L~~~~~  491 (498)
T 3ihj_A          460 GQR----EGTYHFRMTILPPVEKLKTVLQKVKDFHI  491 (498)
T ss_dssp             CCC----TTCCBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             CCC----CCCCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            863    25789999998889999999999998876

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.52  E-value=1.2e-13  Score=102.50  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC--CC-cccCCCcceEEEEeeCCcccccccCCCCCchhhHH-HHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA--GM-VPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK-FAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~--g~-~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gV~v~   82 (126)
                      ++|++++++.|+++++.+.+.|+++  ++ .+..|.||+|+|++++...            ++.+ +.+. +.++||.+.
T Consensus       316 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~------------~~~~~~~~~-l~~~gv~v~  382 (425)
T 2r2n_A          316 MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN------------DVKELIEEK-AVKMGVLML  382 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS------------CCHHHHHTH-HHHTTEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC------------CHHHHHHHH-HHHCCcEEe
Confidence            4789999999999999999999884  66 5678999999999998631            2445 4555 458999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEee-CChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFF-KKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~-~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+....  .+.+++|++|+ .+++++++++++|.+++++
T Consensus       383 pg~~f~~~~~--~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          383 PGNAFYVDSS--APSPYLRASFSSASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             EGGGGSSSTT--SCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCCC--CCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            9999985410  13589999998 5899999999999988764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.50  E-value=1.9e-13  Score=101.21  Aligned_cols=118  Identities=56%  Similarity=1.102  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.++++++.+.+.|.++|+++..|++|+|+|++++......+.+......+..+++..|+.++||.+.||+.
T Consensus       311 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~  390 (429)
T 1yiz_A          311 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSA  390 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchH
Confidence            67999999999999999999998888888889999999999975210000000000013567888877689999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.......+.+++|++++.+++++++++++|.+++++
T Consensus       391 f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          391 FYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             GSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred             hCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence            87531000126899999999899999999999988754

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.50  E-value=9.3e-14  Score=102.45  Aligned_cols=105  Identities=19%  Similarity=0.349  Sum_probs=87.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ..++|++++++.++++++.+.+.|+++|+++..|+||+|+|++++..   +.      ..+..+++..|++++||.+.||
T Consensus       292 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~---~~------~~~~~~~~~~l~~~~gi~v~~g  362 (412)
T 2x5d_A          292 GDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEP---YA------HLGSLEFAKKLLQDAKVSVSPG  362 (412)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSBSSEEEEECCTT---TG------GGCHHHHHHHHHHHHCEECEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCeeeEEEEEcCCc---cC------CCCHHHHHHHHHHHCCEEEeCc
Confidence            33578999999999999999999988888888899999999999642   10      0025678888766689999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +.|+..     +++++|++++.+++++++++++|.++++
T Consensus       363 ~~f~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~l~  396 (412)
T 2x5d_A          363 IGFGDY-----GDDHVRFALIENRDRLRQAVRGIKAMFR  396 (412)
T ss_dssp             GGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             hhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            999643     3689999999988999999999998876

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.50  E-value=1.7e-13  Score=100.31  Aligned_cols=104  Identities=18%  Similarity=0.338  Sum_probs=87.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ...+++++++.++++++.+.+.|+++++. +..|+||+|+|++++...  .         +..+++..|+++.||.+.||
T Consensus       277 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~~~~gi~v~~g  345 (391)
T 3h14_A          277 CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT--D---------DSRAFAAEILEKAGVAVTPG  345 (391)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC--S---------CHHHHHHHHHHHHCEECEEG
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC--C---------CHHHHHHHHHHHCCEEEcCc
Confidence            56799999999999999999999887644 468999999999997532  1         36788888776679999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +.|+..    ..++++|++++.+++++++++++|.+++++
T Consensus       346 ~~~~~~----~~~~~iRis~~~~~~~i~~~l~~l~~~~~~  381 (391)
T 3h14_A          346 LDFDPE----RGAGTLRFSYARATADIEEGLDRLEAFMQA  381 (391)
T ss_dssp             GGTCTT----TGGGEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCC----CCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            999863    146899999999889999999999998874

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.50  E-value=1e-13  Score=100.73  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=85.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|++++++.++++++.+.+.|+++|+++..|+||+|+|++++.              +..+++..|++++||.+.||+
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~  336 (370)
T 2z61_A          271 TEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGE--------------DGREFAYKLLKEKFVALTPGI  336 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSS--------------CHHHHHHHHHHHHCEECEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCC--------------CHHHHHHHHHHhCCEEEeCch
Confidence            467899999999999999999998888888889999999998874              155788887657899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .|+..     +++++|++++.+++++++++++|.++++
T Consensus       337 ~f~~~-----~~~~~Ri~~~~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          337 GFGSK-----GKNYIRISYANSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             GGCGG-----GSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             hhCCC-----CCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            99752     3689999999988999999999998775

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.50  E-value=1.3e-13  Score=104.71  Aligned_cols=112  Identities=14%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++.+++.|+++++.+.+.|+++ |+++..|+||||+|+++......++........++..++..++.+.||.++||+.
T Consensus       380 ~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  459 (500)
T 3tcm_A          380 AEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSG  459 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcc
Confidence            567889999999999999999988 8999999999999977652110000000000012445566677789999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+..    .+++++|++|+.+++++++++++|.++++
T Consensus       460 f~~~----~g~~~iRis~~~~~e~i~~~i~~l~~~~~  492 (500)
T 3tcm_A          460 FGQV----PGTWHFRCTILPQEDKIPAVISRFTVFHE  492 (500)
T ss_dssp             TCCC----TTCCBEEEESCSCTTTHHHHHHHHHHHHH
T ss_pred             cCCC----CCCCEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9863    25789999999888899999999988765

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.50  E-value=2.3e-13  Score=99.76  Aligned_cols=106  Identities=15%  Similarity=0.225  Sum_probs=90.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +...+.|+++.++.++++++.+.+.|+++ ++.+..|++|+|+|++++...  .         +..+++..|+++.||.+
T Consensus       298 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~~~~gi~v  366 (407)
T 3nra_A          298 FDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA--V---------APAEFVKILRLQAGVVV  366 (407)
T ss_dssp             TCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS--S---------CHHHHHHHHHHHHCEEC
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC--C---------CHHHHHHHHHHhCCEEE
Confidence            44556789999999999999999999988 789889999999999998532  1         36688888766679999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .||+.|+..     .++++|++++.+.+++++++++|.+++++
T Consensus       367 ~~g~~~~~~-----~~~~iRis~~~~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          367 TPGTEFSPH-----TADSVRLNFSQDHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             EEGGGTCTT-----CTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             eCchhhCCC-----CCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            999999853     57899999999899999999999988763

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.49  E-value=2.1e-13  Score=99.69  Aligned_cols=102  Identities=16%  Similarity=0.201  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|+.++++.++++++.+.+.|.+. +.+..|+||+|+|++++..             ++.+++..|++++||.+.||+.
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v~~g~~  358 (396)
T 3jtx_A          293 EQHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVPDG-------------DDLAFARNLWQKAAIQVLPGRF  358 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTS-------------CHHHHHHHHHHHHCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCCeeEEEEEECCCC-------------CHHHHHHHHHHHCCEEEeCChH
Confidence            4689999999999999999999876 6677899999999999852             3668888887778999999999


Q ss_pred             cccCcc-cCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           87 FYSDEH-KHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~-~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+.+.. ...+++++|++++.+++++++++++|.+++
T Consensus       359 ~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          359 LARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             GCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             hCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            986310 012468999999999999999999998875

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.49  E-value=6.9e-14  Score=103.58  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=88.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            5 PDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ..++|++++++.++++++.+.+.|+++ ++.+..|+|+|++|++++..+  .         +..++...|+++.||.+.|
T Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~--~---------~~~~l~~~l~~~~gi~v~~  385 (421)
T 3l8a_A          317 YGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYA--I---------AQPQLSEKLQNEAKVVLND  385 (421)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGT--C---------CTTHHHHHHHHTTCEECEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccC--C---------CHHHHHHHHHHhCCEEEEC
Confidence            356789999999999999999999986 899999999999999998532  1         3557888877678999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+.|+..     +++++|++++.+++++++++++|.++++
T Consensus       386 g~~f~~~-----~~~~iRi~~~~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          386 GAHFGKE-----GKYFARLNVATPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             GGGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred             chhhCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            9999754     4789999999999999999999998775

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.49  E-value=1.4e-13  Score=100.48  Aligned_cols=99  Identities=23%  Similarity=0.395  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      |++++++.++++++.+.+.|+++|+++..|+||+|+|++++..+  .         +..+++..|+.++||.+.||+.|+
T Consensus       286 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~~~~gi~v~~g~~~~  354 (389)
T 1gd9_A          286 AVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTG--L---------TSKKFSELMLKEARVAVVPGSAFG  354 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECCBCGGGT--C---------CHHHHHHHHHHHTCEECEEGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEeccCCC--C---------CHHHHHHHHHHhCCEEEeCchhhC
Confidence            89999999999999999999988888888999999999987421  1         366788887658899999999997


Q ss_pred             cCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ..     +++++|++++.+++++++++++|.++++
T Consensus       355 ~~-----~~~~iRi~~~~~~~~i~~~l~~l~~~~~  384 (389)
T 1gd9_A          355 KA-----GEGYVRISYATAYEKLEEAMDRMERVLK  384 (389)
T ss_dssp             GG-----GTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             CC-----CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            53     3689999999988999999999998876

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.49  E-value=1.2e-13  Score=105.83  Aligned_cols=112  Identities=13%  Similarity=0.106  Sum_probs=86.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCC----CCchhhHHHHHHHHHhCCee
Q psy788            5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE----SDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~gV~   80 (126)
                      +.+.|++++++.|+++++.+.+.|. .++.+..|+||||+|++++...........    .+..++.+++..++.+.||.
T Consensus       407 ~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~  485 (533)
T 3f6t_A          407 SDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVV  485 (533)
T ss_dssp             TBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEE
Confidence            3568999999999999999999997 788888999999999999742100000000    00002457777778889999


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      +.||+.|+.      +++++|++|+. +++++++++++|.++++
T Consensus       486 v~pg~~f~~------~~~~iRls~a~~~~e~i~~~i~~L~~~l~  523 (533)
T 3f6t_A          486 LVDGVGFGA------KPGELRVSQANLPTEDYALIGKQVLELLK  523 (533)
T ss_dssp             SCTTEEECS------STTEEEEESSSSCHHHHHHHHHHHHHHHH
T ss_pred             EeCCcccCC------CCCEEEEEEeeCCHHHHHHHHHHHHHHHH
Confidence            999999985      36799999996 89999999999998875

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.49  E-value=6.1e-14  Score=101.87  Aligned_cols=102  Identities=17%  Similarity=0.185  Sum_probs=86.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA--GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.|++++++.++++++.+.+.|++.  ++++..|+||+++|++++..+            .+.+++..++++.||.+.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v~~  339 (377)
T 3fdb_A          272 GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT------------IEGSPSEFFIEKAKVAMND  339 (377)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC------------CCSCHHHHHHHHHCEECEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC------------CCHHHHHHHHHhCCEEecC
Confidence            35789999999999999999999984  899999999999999998632            1235667777667999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+..     .++++|++++.+++++++++++|.+++++
T Consensus       340 g~~~~~~-----~~~~~Ris~~~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          340 GAWFGED-----GTGFCRLNFATSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             GGGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred             ChhccCC-----CCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            9999864     46899999999899999999999998764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.48  E-value=2.5e-13  Score=99.23  Aligned_cols=101  Identities=32%  Similarity=0.621  Sum_probs=84.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.++++++.+.+.|++.|+++..|+||+|+|++++.... .         +..+++..|+.++||.+.||+.
T Consensus       285 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~-~---------~~~~~~~~l~~~~gi~v~~g~~  354 (386)
T 1u08_A          285 PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVST-L---------DDVEFCQWLTQEHGVAAIPLSV  354 (386)
T ss_dssp             THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCC-S---------CHHHHHHHHHHHSCEECEEGGG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEecCCCCC-C---------CHHHHHHHHHHhCCEEEeCchH
Confidence            57899999999999999999998888888889999999999975210 1         3667888877678999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      |+...   .+++++|++++.+++++++++++|.+
T Consensus       355 f~~~~---~~~~~iRis~~~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          355 FCADP---FPHKLIRLCFAKKESTLLAAAERLRQ  385 (386)
T ss_dssp             GCSSC---CCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             hCCCC---CCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence            97531   24689999999988999999999864

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.48  E-value=2e-13  Score=99.42  Aligned_cols=103  Identities=14%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDK-A-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.|++++++.++++++.+.+.|++ + ++.+..|++|+++|++++..+  .         +..+++..|+++.||.+.|
T Consensus       284 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~~~~gi~v~~  352 (391)
T 3dzz_A          284 GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALG--M---------NAEDFCKYLREKTGLIISA  352 (391)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGC--S---------CHHHHHHHHHHHHCEECEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcC--C---------CHHHHHHHHHHhCCEEEeC
Confidence            4578999999999999999999998 4 899999999999999998532  1         3678888876688999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+..     +++++|++++.+++++++++++|.+++++
T Consensus       353 g~~~~~~-----~~~~iRis~~~~~~~i~~~l~~l~~~l~~  388 (391)
T 3dzz_A          353 GNGYRGN-----GHEFVRINLACPKELVIDGMQRLKQGVLN  388 (391)
T ss_dssp             SGGGCTT-----GGGEEEEECCSCHHHHHHHHHHHHHHHHT
T ss_pred             chhhCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            9999864     46899999999889999999999998764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.47  E-value=5e-13  Score=99.24  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.++++++.+.+.|.+.|+++..|+||+|+|++++....      .....+..+++..|+++.||.+.||+.
T Consensus       324 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~------~~~~~~~~~~~~~l~~~~gi~v~~g~~  397 (435)
T 3piu_A          324 KNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLR------SNTFEAEMELWKKIVYEVHLNISPGSS  397 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSS------SSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccc------cCCchhHHHHHHHHHHHCCEEEeCCcc
Confidence            34778999999999999999999888999899999999999985310      000012457888887666999999999


Q ss_pred             cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      |+..     +++++||+++. +++++++++++|.+++++
T Consensus       398 ~~~~-----~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          398 CHCT-----EPGWFRVCFANLPERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             GTCS-----STTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----CCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence            9764     47899999997 899999999999988763

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.47  E-value=2.5e-13  Score=98.95  Aligned_cols=102  Identities=17%  Similarity=0.213  Sum_probs=86.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDK-A-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.|++++++.++++++.+.+.|++ . ++.+..|+|++++|++++...  .         +..+++..|.++.||.+.|
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~~~~gi~v~~  356 (391)
T 4dq6_A          288 GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALG--L---------SDEELESILVQKGKVALNQ  356 (391)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGC--C---------CHHHHHHHHHHTTCEECEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcC--C---------CHHHHHHHHHHhCCEEeeC
Confidence            4578999999999999999999988 4 799999999999999998521  1         3678888876444999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+.|+..     +.+++|++++.+++++++++++|.++++
T Consensus       357 g~~~~~~-----~~~~iRis~~~~~~~i~~~l~~l~~~l~  391 (391)
T 4dq6_A          357 GNSFGIG-----GSGYQRINLACPRSMLEEALIRIKNAIN  391 (391)
T ss_dssp             GGGGCTT-----CTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             chhhCCC-----CCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            9999863     4689999999988999999999988763

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.47  E-value=4.1e-13  Score=99.73  Aligned_cols=105  Identities=18%  Similarity=0.317  Sum_probs=87.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ...|+.++++.++++++.+.+.|+++ |+.+..|+||+|+|++++...  ++  .   ..++.+++..|+++.||.+.||
T Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~--~~--~---~~~~~~~~~~l~~~~gV~v~~g  390 (427)
T 3dyd_A          318 PGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEH--FP--E---FENDVEFTERLVAEQSVHCLPA  390 (427)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGG--CT--T---CSSHHHHHHHHHHHHCEECEEG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhh--cC--C---CCCHHHHHHHHHHHCCEEEECC
Confidence            35789999999999999999999988 888889999999999987421  00  0   0135678888877899999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +.|+.       ++++|++++.+++++++++++|.+++++
T Consensus       391 ~~~~~-------~~~iRis~~~~~e~i~~~l~~l~~~l~~  423 (427)
T 3dyd_A          391 TCFEY-------PNFIRVVITVPEVMMLEACSRIQEFCEQ  423 (427)
T ss_dssp             GGGTC-------TTEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred             cccCC-------CCeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99863       5799999998899999999999988764

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.47  E-value=3.6e-13  Score=98.05  Aligned_cols=100  Identities=16%  Similarity=0.215  Sum_probs=84.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ...+.|++++++.++++++.+.+.|+++ +.+..|++|+|+|++++..   .         +..+++..|. ++||.+.|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l~-~~gi~v~~  341 (376)
T 2dou_A          276 KTPKEVVRGYARVYRERALGMAEALKGV-LSLLPPRATMYLWGRLPEG---V---------DDLEFGLRLV-ERGVALAP  341 (376)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCBSSEEEEECCTT---C---------CHHHHHHHHH-HTTEECEE
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCeeEEEEEECCCC---C---------CHHHHHHHHH-HCCEEEcC
Confidence            3346799999999999999999999987 7778899999999999752   1         3567888876 55999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+.|+..     .++++|++++.+++++++++++|.+++
T Consensus       342 g~~f~~~-----~~~~~Ris~~~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          342 GRGFGPG-----GKGFVRIALVRPLEELLEAAKRIREAL  375 (376)
T ss_dssp             GGGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             chhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence            9999743     368999999988899999999998765

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.46  E-value=8.4e-13  Score=96.52  Aligned_cols=102  Identities=16%  Similarity=0.185  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            7 KCYFYTISEELRPKREILADALDK-A-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++|++++++.++++++.+.+.|++ + ++.+..|+|||++|++++..+  .         +..+++..|..++||.+.||
T Consensus       285 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~l~~~l~~~~gi~v~~g  353 (390)
T 1d2f_A          285 APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN--I---------DDNALQKALIEQEKVAIMPG  353 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC--C---------CHHHHHHHHHHTTCEECEEG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccC--C---------CHHHHHHHHHHHcCEEeeCc
Confidence            578999999999999999999998 5 788889999999999997521  1         35678888765789999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +.|+..     .++++|++++.+++++++++++|.+++++
T Consensus       354 ~~f~~~-----~~~~~Ris~~~~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          354 YTYGEE-----GRGFVRLNAGCPRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             GGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            999642     36899999999888999999999988764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.45  E-value=4.4e-13  Score=98.83  Aligned_cols=107  Identities=28%  Similarity=0.433  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++++++.++++++.+.+.|++.|+++..|++|+|+|++++... ..         ++.+++..|+.++||.+.||+.
T Consensus       282 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~-~~---------~~~~~~~~l~~~~gi~v~~g~~  351 (411)
T 2o0r_A          282 DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLG-YD---------DSTEFCAALPEKVGVAAIPMSA  351 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEEEEECGGGT-CC---------CHHHHHHHHHHHHSEECEEGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEEEEecCCCC-CC---------CHHHHHHHHHHhCCEEEcChhh
Confidence            6789999999999999999999887888888999999999997521 01         3567888877678999999999


Q ss_pred             cccCcc------cCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEH------KHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~------~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+....      ...+.+++|++++.+++++++++++|.++++
T Consensus       352 f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~  394 (411)
T 2o0r_A          352 FCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAE  394 (411)
T ss_dssp             GSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC
T ss_pred             hCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence            853200      0003579999999888899999999988765

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.45  E-value=2.3e-13  Score=104.59  Aligned_cols=112  Identities=12%  Similarity=0.080  Sum_probs=81.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCC----CCchhhHHHHHHHHHhCCee
Q psy788            5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE----SDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~gV~   80 (126)
                      ..+.|++.+++.|++|++.+.+.|. .++.+..|+||||+|++++......+....    ....++.++...++.+.||.
T Consensus       404 ~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~  482 (546)
T 2zy4_A          404 EADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIV  482 (546)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEE
Confidence            4468999999999999999999986 566667899999999998631000000000    00001334445556789999


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      +.||+.|+.      +++++|++++. +++++++++++|.+++.
T Consensus       483 v~pG~~F~~------~~~~iRis~~~~~~e~i~~~~~~l~~~l~  520 (546)
T 2zy4_A          483 LLPGRGFGS------NRPSGRASLANLNEYEYAAIGRALRKMAD  520 (546)
T ss_dssp             CEESSCTTC------SSCEEEEESSSSCHHHHHHHHHHHHHHHH
T ss_pred             EeCccccCC------CCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence            999999975      36899999997 88889999999988765

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.44  E-value=1.1e-12  Score=97.18  Aligned_cols=101  Identities=19%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            7 KCYFYTISEELRPKREILADALDKA-----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +.|++++++.|+++++.+.+.|.+.     ++.+..|+||+|+|++++..             +..++.+.| .++||.+
T Consensus       311 ~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------------~~~~~~~~l-~~~gv~v  376 (427)
T 3ppl_A          311 RAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-------------TASRVAELA-KEAGIAL  376 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-------------CHHHHHHHH-HHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-------------hHHHHHHHH-HHCCCEE
Confidence            5789999999999999999998763     47778899999999999852             255777765 6889999


Q ss_pred             eC-CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           82 IP-PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~p-g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .| |+.|....  ...++++|++|+. +++++++++++|.++++
T Consensus       377 ~~~g~~~~~~~--~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~  418 (427)
T 3ppl_A          377 TGAGSSYPLRQ--DPENKNLRLAPSLPPVEELEVAMDGVATCVL  418 (427)
T ss_dssp             CCTTTTSGGGC--CTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             ecCcCcCCCCC--CCCCCeEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            99 55554321  1257899999998 78999999999998875

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.44  E-value=1.2e-12  Score=95.83  Aligned_cols=101  Identities=12%  Similarity=0.171  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            7 KCYFYTISEELRPKREILADALDK-A-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++|++++++.++++++.+.+.|++ + ++.+..|+|||++|++++..+  .         +..+++..|+.++||.+.||
T Consensus       289 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~~~~gi~v~~g  357 (399)
T 1c7n_A          289 GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK--M---------DHKAMEEFMIHKAQIFFDEG  357 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC--C---------CHHHHHHHHHHTTCCCCEEG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC--C---------CHHHHHHHHHHhCCEEEeCc
Confidence            578999999999999999999998 6 788889999999999997521  1         35678888765789999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +.|+..     .++++|++++..++++++++++|.++++
T Consensus       358 ~~~~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~l~  391 (399)
T 1c7n_A          358 YIFGDG-----GIGFERINLAAPSSVIQESLERLNKALK  391 (399)
T ss_dssp             GGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             cccCCC-----CCCeEEEEeccCHHHHHHHHHHHHHHHH
Confidence            999743     4689999999888899999999988765

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.43  E-value=2.4e-12  Score=94.40  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            8 CYFYTISEELRPKREILADALDKA---GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +|++++++.++++++.+.+.|++.   |+.+..|.+|+|+|++++..   .         +..++++.|. ++||.+.||
T Consensus       288 ~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~---~---------~~~~~~~~l~-~~gi~v~~g  354 (397)
T 2zyj_A          288 ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKG---L---------SAEGLFRRAL-EENVAFVPG  354 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTT---C---------CHHHHHHHHH-HTTEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCC---C---------CHHHHHHHHH-HCCCEEech
Confidence            689999999999999999999875   68888899999999999752   1         3667888876 669999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      +.|+...   ..++++|++++. +++++++++++|.++++
T Consensus       355 ~~f~~~~---~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  391 (397)
T 2zyj_A          355 GPFFANG---GGENTLRLSYATLDREGIAEGVRRLGRALK  391 (397)
T ss_dssp             GGGCTTS---CCTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC---CCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            9997532   246899999997 68999999999998775

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.43  E-value=1.5e-12  Score=95.76  Aligned_cols=105  Identities=12%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            8 CYFYT-ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         8 ~~l~~-~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .++.+ +++.|+++++.+.+.|.+.    ++.+..|++|+|+|++++...  .         +..+++..| .++||.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~--~---------~~~~l~~~l-~~~gi~v~  368 (417)
T 3g7q_A          301 RLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLP--I---------TTELLYQRL-KARGVLMV  368 (417)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCS--S---------CHHHHHHHH-HHTTEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCC--C---------CHHHHHHHH-HHCCEEEE
Confidence            34445 8889999999999999873    477888999999999998622  1         366888886 58899999


Q ss_pred             CCCCcccCccc--CCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHK--HLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~--~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+.....  ...++++||+|+.+++++++++++|.+++++
T Consensus       369 ~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~  412 (417)
T 3g7q_A          369 PGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIER  412 (417)
T ss_dssp             EGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            99999764200  0015799999999889999999999988763

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.43  E-value=3.8e-13  Score=99.09  Aligned_cols=95  Identities=9%  Similarity=0.073  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccC-------------CCcceEEEEeeCCcccccccCCCCCchhhHHHHHH
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVI-------------PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKW   72 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~-------------p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (126)
                      +.|++++++.|+++++.+.+.|+++ ++++..             |++|+|+|++++..               ..+.. 
T Consensus       277 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---------------~~~~~-  340 (391)
T 3bwn_A          277 ENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---------------TDLVS-  340 (391)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---------------CCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH---------------HHHHH-
Confidence            6799999999999999999999987 555543             45677999999741               12333 


Q ss_pred             HHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           73 MTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        73 l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ++.++||.+.||+.|+.      +++++|+||+.+++++++++++|.++++
T Consensus       341 ~l~~~gV~v~pg~~fg~------~~~~iRis~~~~~e~i~~~~~~L~~~~~  385 (391)
T 3bwn_A          341 ELRRHKVMSRAGERCGS------DKKHVRVSMLSREDVFNVFLERLANMKL  385 (391)
T ss_dssp             HHHHTTEECEEGGGGTC------CTTEEEEESCSCHHHHHHHHHHHHSCC-
T ss_pred             HHHHCCEEEccCCCCCC------CCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence            45689999999999974      3689999999988899999999988765

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.42  E-value=6e-13  Score=97.13  Aligned_cols=101  Identities=17%  Similarity=0.340  Sum_probs=85.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .++|++++++.++++++.+.+.|+++ |+++..|+||+|+|++++..+  .         +..+++..|+.+.||.+.||
T Consensus       285 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~~~~gi~v~~g  353 (388)
T 1j32_A          285 SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTG--R---------SSLDFCSELLDQHQVATVPG  353 (388)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGT--C---------CHHHHHHHHHHHHCEECEEG
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCC--C---------CHHHHHHHHHHhCCEEEeCh
Confidence            45789999999999999999999988 888888999999999887421  1         36678888765579999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +.|+.       ++++|++++.+++++++++++|.+++++
T Consensus       354 ~~~~~-------~~~iRis~~~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          354 AAFGA-------DDCIRLSYATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             GGGTC-------TTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhCC-------CCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            98863       4789999998889999999999988764

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.42  E-value=9.2e-13  Score=95.75  Aligned_cols=102  Identities=14%  Similarity=0.077  Sum_probs=87.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            4 APDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ...+.+++++++.++++++.+.+.|+++ ++.+..|.||+++|+.++..   .         +..+++..++.+.||.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~ll~~~gi~v~  335 (375)
T 3op7_A          268 AHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVD---M---------PMEDFCLQLLQEHGVLLV  335 (375)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCS---S---------CHHHHHHHHHHHHCEECE
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCC---C---------CHHHHHHHHHHhCCEEEe
Confidence            3456789999999999999999999987 68888999999999999753   1         366888887778999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+.       ++++|++++...+++++++++|.+++++
T Consensus       336 ~g~~~~~-------~~~iRi~~~~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          336 PGNRFER-------DGYVRLGFACEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             EGGGGTC-------TTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred             ChhhhCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            9998873       5799999999779999999999988763

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.41  E-value=3.4e-13  Score=99.16  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEe-eCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVAD-WTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      |++++++.|+++++.+.+.|++.|+++..|.+|+|+|++ ++..   .         ++.+++..|+.+.||.+.||+.|
T Consensus       293 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l~~~~gv~v~~g~~f  360 (400)
T 3asa_A          293 PQLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQAN---I---------SDRDLFDFFLREYHIAITPGIGF  360 (400)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTCEEEECSSSSEEEEECCCTT---C---------CTTTHHHHHHHHHSEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCceEEEEeccCCC---C---------CHHHHHHHHHHhCCEEEeChhHh
Confidence            678899999999999999999888888888899999999 7642   1         24467777776679999999999


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +..     +++++|+++..+++++++++++|.++++
T Consensus       361 ~~~-----~~~~iRis~~~~~e~i~~~l~~l~~~~~  391 (400)
T 3asa_A          361 GRS-----GSGFVRFSSLGKREDILAACERLQMAPA  391 (400)
T ss_dssp             CGG-----GTTCEEEECCSCHHHHHHHHHHHHC---
T ss_pred             CCC-----CCCEEEEEeeCCHHHHHHHHHHHHHHHH
Confidence            743     3689999977788999999999998876

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.41  E-value=7.2e-13  Score=97.53  Aligned_cols=103  Identities=18%  Similarity=0.283  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .++++++++.++++++.+.+.|+++ ++.+..|+||+|+|++++... ..         +..+++..|+.+.||.+.||+
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~l~~~l~~~~gi~v~~g~  368 (406)
T 1xi9_A          299 MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGP-WK---------NDKEFVLDVLHNAHVLFVHGS  368 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCS-CS---------SHHHHHHHHHHHHCEECEEGG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccC-CC---------CHHHHHHHHHHhCCEEEeCch
Confidence            4578999999999999999999988 788888999999999987410 01         366788887668899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .|+..     +++++|++++.+++++++++++|.+++++
T Consensus       369 ~f~~~-----~~~~lRis~~~~~~~i~~~~~~l~~~l~~  402 (406)
T 1xi9_A          369 GFGEY-----GAGHFRAVFLPPIEILEEAMDRFEKFMKE  402 (406)
T ss_dssp             GGCGG-----GTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            99753     36899999998889999999999988764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.41  E-value=3.4e-12  Score=94.48  Aligned_cols=106  Identities=19%  Similarity=0.271  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .|++++++.++++++.+.+.|+++|+++..|++|+|+|++++.....      ....+..++++.|+.+.||.+.||+.|
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~gi~v~~~~~~  393 (428)
T 1iay_A          320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRE------STFDSEMSLWRVIINDVKLNVSPGSSF  393 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSS------SSHHHHHHHHHHHHHTSCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCC------CchhHHHHHHHHHHHhCCEEEeCchhh
Confidence            48899999999999999999998888888888999999999753100      000124578888765569999999988


Q ss_pred             ccCcccCCCCCeEEEEee-CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF-KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~-~~~e~i~~~~~~l~~~~~~  124 (126)
                      +..     +++++|++++ .+++++++++++|.+++++
T Consensus       394 ~~~-----~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          394 ECQ-----EPGWFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             TCS-----SSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             CCC-----CCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            753     3679999999 5889999999999988764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.40  E-value=2.2e-12  Score=95.00  Aligned_cols=104  Identities=16%  Similarity=0.311  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +.|++++++.++++++.+.+.|+++ |+.+..|.+|+|+|++++...  +.  .   ..++.+++..|+.++||.+.||+
T Consensus       308 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~--~~--~---~~~~~~~~~~l~~~~gi~v~~g~  380 (416)
T 1bw0_A          308 QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK--YR--D---IKTDVEFFEKLLEEENVQVLPGT  380 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG--BS--S---CCSHHHHHHHHHHHHCEECEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH--cC--C---CCCHHHHHHHHHHHCCEEEeccc
Confidence            5789999999999999999999987 788888999999999987421  00  0   00356788887668899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .|+.       ++++|++++.+++++++++++|.+++++
T Consensus       381 ~f~~-------~~~iRis~~~~~e~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          381 IFHA-------PGFTRLTTTRPVEVYREAVERIKAFCQR  412 (416)
T ss_dssp             GGTC-------TTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            8863       4799999988889999999999988763

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.40  E-value=1.3e-12  Score=96.82  Aligned_cols=101  Identities=20%  Similarity=0.245  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            7 KCYFYTISEELRPKREILADALDKA-----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      ++|++++++.|+++++.+.+.|++.     |+.+..|.+|+|+|++++..   .         +..++++.|. ++||.+
T Consensus       310 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~---~---------~~~~l~~~l~-~~gi~v  376 (425)
T 1vp4_A          310 LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG---F---------DTWEMFEYAK-RKKVFY  376 (425)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTT---C---------CTTTTHHHHH-HHTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCC---C---------CHHHHHHHHH-HCCCEE
Confidence            5789999999999999999999875     57887899999999999752   1         2446778876 559999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .||+.|+...   ..++++|++++. +++++++++++|.++++
T Consensus       377 ~~g~~f~~~~---~~~~~iRis~~~~~~e~i~~~l~~l~~~l~  416 (425)
T 1vp4_A          377 VPGRVFKVYD---EPSPSMRLSFCLPPDEKIVEGIKRLREVVL  416 (425)
T ss_dssp             EEGGGGCTTC---CCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             ECchhhcCCC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            9999997532   246899999998 78999999999988765

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.40  E-value=3.8e-12  Score=94.01  Aligned_cols=101  Identities=16%  Similarity=0.240  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh----CC--CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788            7 KCYFYTISEELRPKREILADALDK----AG--MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~----~g--~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      ..|++++++.|+++++.+.+.|.+    .+  +.+..|++|+|+|++++..             +..++... +.++||.
T Consensus       305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-------------~~~~~~~~-l~~~gv~  370 (423)
T 3ez1_A          305 EGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-------------VADRVVKL-AEAAGVS  370 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-------------CHHHHHHH-HHHTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-------------cHHHHHHH-HHHCCcE
Confidence            578999999999999999888876    23  6678899999999999852             24566666 4689999


Q ss_pred             EeC-CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           81 GIP-PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~p-g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      +.| |+.|+...  ...++++||+++. +++++++++++|.++++
T Consensus       371 v~~~g~~~~~~~--~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  413 (423)
T 3ez1_A          371 LTPAGATYPAGQ--DPHNRNLRLAPTRPPVEEVRTAMQVVAACIR  413 (423)
T ss_dssp             CCCTTTTSSTTC--CSSSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             EecCcccccCCC--CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            999 66775321  0247899999997 89999999999998876

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.39  E-value=3e-12  Score=93.70  Aligned_cols=90  Identities=14%  Similarity=0.279  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788           13 ISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH   92 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~   92 (126)
                      .++.|+++++.+.+.|.+.|+.+..|+||+|+|++++..             +..++++.| .++||.+.||+.|+.   
T Consensus       305 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l-~~~gi~v~~g~~~~~---  367 (398)
T 3ele_A          305 DINAYKENRDLLYEGLTRIGYHCFKPDGAFYMFVKALED-------------DSNAFCEKA-KEEDVLIVAADGFGC---  367 (398)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECSSS-------------CHHHHHHHH-HTTTEECEESGGGTC---
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeecCCCeeEEEEEEcCCC-------------CHHHHHHHH-HHCCEEEeCccccCC---
Confidence            468899999999999988888999999999999998752             366788875 588999999999963   


Q ss_pred             cCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           93 KHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        93 ~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                          ++++|++++.+++++++++++|.++++
T Consensus       368 ----~~~iRis~~~~~e~i~~~l~~l~~~l~  394 (398)
T 3ele_A          368 ----PGWVRISYCVDREMIKHSMPAFEKIYK  394 (398)
T ss_dssp             ----TTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ----CCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                579999999899999999999998876

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.09  E-value=3e-14  Score=104.46  Aligned_cols=105  Identities=15%  Similarity=0.170  Sum_probs=87.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDK-A-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      |...++|++++++.++++++.+.+.|++ + ++.+..|+|||++|++++..+  .         +..++++.|+.++||.
T Consensus       285 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~--~---------~~~~l~~~l~~~~gi~  353 (392)
T 3b1d_A          285 YRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYG--L---------TDDALFTLLHDQAKVI  353 (392)
Confidence            3444679999999999999999999988 5 788889999999999997521  1         2557888875578999


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +.||+.|+..     +++++|++++.+++++++++++|.++++
T Consensus       354 v~~g~~f~~~-----~~~~iRi~~~~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          354 LNRGSDYGSE-----GELHARLNIAAPKSLVEEICKRIVCCLP  391 (392)
Confidence            9999999742     4689999999888889999999988765

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.38  E-value=3.7e-12  Score=93.86  Aligned_cols=104  Identities=23%  Similarity=0.415  Sum_probs=86.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHh-----CC
Q psy788            5 PDKCYFYTISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKN-----VK   78 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g   78 (126)
                      ..+.|++++++.++++++.+.+.|+++|+++ ..|++|+|+|++++.    .         +..+++..|..+     .|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----~---------~~~~l~~~l~~~~~~~~~g  357 (409)
T 2gb3_A          291 LDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPV----E---------DAEEFARWMLTDFNMDGET  357 (409)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSS----S---------CHHHHHHHHHHSCCBTTEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeCC----C---------CHHHHHHHHHhccccccCc
Confidence            3467899999999999999999998888888 789999999999872    1         366788887644     49


Q ss_pred             eeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           79 LQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        79 V~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |.+.||+.|+...  ..+++++|++++.+++++++++++|.++++
T Consensus       358 i~v~~g~~f~~~~--~~~~~~iRis~~~~~e~i~~~~~~l~~~l~  400 (409)
T 2gb3_A          358 TMVAPLRGFYLTP--GLGKKEIRIACVLEKDLLSRAIDVLMEGLK  400 (409)
T ss_dssp             EECEEGGGGCSST--TTTSSEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeCchHhCCCC--CCCCCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            9999999997531  024689999999888999999999988775

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.36  E-value=8.2e-12  Score=92.50  Aligned_cols=101  Identities=22%  Similarity=0.180  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC----C-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            7 KCYFYTISEELRPKREILADALDKA----G-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~----g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      ++|++++++.|+++++.+.+.|.+.    + +.+..|+||+|+|++++..             +..++... +.++||.+
T Consensus       309 ~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------------~~~~~~~~-l~~~gV~v  374 (422)
T 3d6k_A          309 KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-------------TASRVVEL-AKEAGIAL  374 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-------------CHHHHHHH-HHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-------------CHHHHHHH-HHHCCeEE
Confidence            4789999999999999999998763    3 5667899999999999752             24456665 56899999


Q ss_pred             eC-CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           82 IP-PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~p-g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .| |+.|....  ...++++|||++. +++++++++++|.++++
T Consensus       375 ~~~g~~f~~~~--~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~  416 (422)
T 3d6k_A          375 TGAGSSFPLHN--DPNNENIRLAPSLPPVAELEVAMDGFATCVL  416 (422)
T ss_dssp             CCTTTTSGGGC--CTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             EcCccccCCCC--CCCCCeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            99 45564221  0136899999995 89999999999998775

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.36  E-value=6.1e-12  Score=92.16  Aligned_cols=94  Identities=22%  Similarity=0.407  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      ++++++.++++++.+.+.|+++|+++..|+||+|+|++++ .             +..++++.|+.+.||.+.||+.|+.
T Consensus       295 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~-------------~~~~l~~~l~~~~gi~v~~g~~f~~  360 (389)
T 1o4s_A          295 NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVR-G-------------DDVKFCERLLEEKKVALVPGSAFLK  360 (389)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECS-S-------------CHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEEEeCC-C-------------CHHHHHHHHHHHCCEEEeCchhcCC
Confidence            6788999999999999999888888888999999999987 2             2567888876588999999998863


Q ss_pred             CcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           90 DEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                             ++++|++++.+++++++++++|.+++++
T Consensus       361 -------~~~~Ris~~~~~~~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          361 -------PGFVRLSFATSIERLTEALDRIEDFLNS  388 (389)
T ss_dssp             -------TTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred             -------CCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence                   3699999999889999999999988764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.35  E-value=7e-12  Score=92.00  Aligned_cols=102  Identities=22%  Similarity=0.281  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA--GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .|++++++.++++++.+.+.|++.  ++.+..|.+|+|+|++++..   .         +..+++..|..+.||.+.||+
T Consensus       299 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~l~~~~gi~v~~g~  366 (407)
T 2zc0_A          299 YHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEG---A---------DGISFANELMEREGVVVVPGK  366 (407)
T ss_dssp             HTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTT---C---------CHHHHHHHHHHHTCEECBCSG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCC---C---------CHHHHHHHHHHhCCeEEECch
Confidence            678899999999999999999874  67777899999999999752   1         366788887644499999999


Q ss_pred             CcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      .|+...   ..++++|++++. +++++++++++|.+++++
T Consensus       367 ~~~~~~---~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  403 (407)
T 2zc0_A          367 PFYTDE---SGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE  403 (407)
T ss_dssp             GGCSSS---CCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred             hccCCC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            987532   246899999997 689999999999988753

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.35  E-value=6e-12  Score=91.37  Aligned_cols=96  Identities=13%  Similarity=0.191  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..+++++++.++++++.+.+.|+  ++.  .|.+|+|+|++++.               ..+++..|.+++||.+.||+.
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~~~~~~~~---------------~~~~~~~l~~~~gi~v~~g~~  339 (376)
T 3ezs_A          279 DRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFYVYLPVQN---------------GENFAKTLYQNEGIITLPALY  339 (376)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSEEEEECSC---------------HHHHHHHHHHHHCCBCEEGGG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceEEEEECCC---------------HHHHHHHHHHhCCEEEeCcHH
Confidence            46789999999999999999997  554  78999999999872               557888876558999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+...   ..++++|++++.+++++++++++|.+++++
T Consensus       340 ~~~~~---~~~~~iRis~~~~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          340 LGRNR---IGADYVRLALVYDTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             GCSTT---TTTTEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred             hCCCC---CCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            98531   257899999998899999999999998865

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.33  E-value=1.5e-11  Score=89.52  Aligned_cols=97  Identities=29%  Similarity=0.547  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ++|++++++.++++++.+.+.|++.|+++..|+||+|+|++++..              +  +.. ++.++||.+.||+.
T Consensus       273 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--------------~--~~~-~l~~~gi~v~~g~~  335 (381)
T 1v2d_A          273 EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW--------------D--AFR-LVEEARVALIPASA  335 (381)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTC--------------C--HHH-HHHHTCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEEecChH--------------h--HHH-HHHhCCEEEecchH
Confidence            568999999999999999999988888888899999999998641              2  333 45689999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+...   ...+++|++++.+.+++++++++|.++++
T Consensus       336 ~~~~~---~~~~~iRi~~~~~~~~i~~~~~~l~~~l~  369 (381)
T 1v2d_A          336 FYLED---PPKDLFRFAFCKTEEELHLALERLGRVVN  369 (381)
T ss_dssp             GCSSS---CCTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred             hCCCC---CCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            97531   24689999999988999999999988765

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.32  E-value=1.9e-11  Score=90.75  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=81.3

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            8 CYFYT-ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         8 ~~l~~-~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .++.+ +++.|+++++.+.+.|.+.    ++.+..|++|+|+|++++...  .         +..+++..| .++||.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~--~---------~~~~l~~~l-~~~gi~v~  394 (444)
T 3if2_A          327 QLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP--I---------STLDLYERL-KAKGTLIV  394 (444)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS--S---------CHHHHHHHH-HHTTEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC--C---------CHHHHHHHH-HHCCeEEe
Confidence            34455 8889999999999998763    456778999999999998521  1         366788886 58899999


Q ss_pred             CCCCcccCccc---CCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHK---HLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~---~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ||+.|+.....   ...++++||+|+.+++++++++++|.++++
T Consensus       395 ~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~  438 (444)
T 3if2_A          395 PSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVR  438 (444)
T ss_dssp             EGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            99999753100   012479999999988999999999998875

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.31  E-value=1.8e-11  Score=90.57  Aligned_cols=96  Identities=15%  Similarity=0.200  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc-------CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788           10 FYTISEELRPKREILADALDKAGMVPV-------IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~-------~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ++++++.++++++.+.+.|+++|+++.       +|.+|+|+|++++.    .         +..+++..|. ++||.+.
T Consensus       333 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~~l~~~L~-~~gi~v~  398 (437)
T 3g0t_A          333 FRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKG----M---------DSSKLIEKFV-RYGMCAI  398 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETT----C---------CHHHHHHHHH-HTTEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCC----C---------CHHHHHHHHH-HcCeEEe
Confidence            899999999999999999998887777       44999999999983    1         3678888875 6799999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+..     .++++|++++. +++++++++++|.+++++
T Consensus       399 ~~~~~~~~-----~~~~iRis~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          399 TLKTTGSK-----RNEAMRICTSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             ESTTTTCC-----CTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred             eccccCCC-----CCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            99998753     34789999997 889999999999987753

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.27  E-value=4.7e-11  Score=88.42  Aligned_cols=90  Identities=12%  Similarity=0.159  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALD----KAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~----~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++++++.|+++++.+.+.|+    +.|+++..|+||+|+|++++.    .         +..+++..|.+++||.+.|| 
T Consensus       333 ~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~----~---------~~~~~~~~l~~~~gi~v~~g-  398 (430)
T 2x5f_A          333 IEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHD----V---------DPEALRKHLIDKYSIGVIAL-  398 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEESS----S---------CHHHHHHHHHHHHCEECEEC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCCC----C---------CHHHHHHHHHHhCCEEEecC-
Confidence            33499999999999999998    557888889999999999982    1         36688888765489999998 


Q ss_pred             CcccCcccCCCCCeEEEEee-CChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFF-KKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~-~~~e~i~~~~~~l~~~~~  123 (126)
                          .      ++++|++++ .+++++++++++|.++++
T Consensus       399 ----~------~~~iRis~~~~~~e~i~~~~~~l~~~l~  427 (430)
T 2x5f_A          399 ----N------ATDIRIAFSCVEKDDIPHVFDSIAKAID  427 (430)
T ss_dssp             ----S------SSEEEEEGGGSCGGGHHHHHHHHHHHHH
T ss_pred             ----C------CCeEEEEEecCCHHHHHHHHHHHHHHHH
Confidence                1      468999999 688899999999998875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.25  E-value=4.6e-11  Score=88.07  Aligned_cols=88  Identities=13%  Similarity=0.109  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +++++++.|+++++.+.+.|+++|+++..|+||||+|++++               +..++++.| .++||.+.||    
T Consensus       326 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~l-~~~gi~v~~g----  385 (418)
T 3rq1_A          326 ERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTD---------------SANAICEEL-KKEHIYVIAL----  385 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECT---------------THHHHHHHH-HHTTEECEEC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCC---------------CHHHHHHHH-HhCCEEEecC----
Confidence            44578899999999999999888999999999999999874               255777765 6899999996    


Q ss_pred             cCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           89 SDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                              ++++||+|+. +++++++++++|.+++++
T Consensus       386 --------~~~iRis~~~~~~~~i~~~~~~l~~~l~~  414 (418)
T 3rq1_A          386 --------ANGIRIAACGIPKCQMTGLAEKIYNAMKS  414 (418)
T ss_dssp             --------SSEEEEEGGGSCHHHHTTHHHHHHHHHHH
T ss_pred             --------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence                    2479999995 899999999999988763

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.21  E-value=1.8e-11  Score=91.05  Aligned_cols=83  Identities=14%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH----hCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788            8 CYFYTISEELRPKREILADALD----KAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~----~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV   79 (126)
                      ++++.+|+.|+++|+.+.+.|+    ++|    +++..|+||||+|+.++.                 +++..| .++||
T Consensus       312 ~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------------~~~~~L-~~~gV  373 (405)
T 3k7y_A          312 KELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------------KIAEHL-KTHHI  373 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------------GGTTTT-TTTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------------HHHHHH-HHCCE
Confidence            5678888999999999999999    765    578899999999987652                 234566 78999


Q ss_pred             eEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           80 QGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .++||           +    ||||+. +++.++.++++|.++++
T Consensus       374 ~v~p~-----------~----Ris~a~~~~~~i~~~~~~i~~~~~  403 (405)
T 3k7y_A          374 YIINN-----------G----RINVSGITKNNVDYIADKICLSLS  403 (405)
T ss_dssp             ECCTT-----------S----EEEGGGCCTTHHHHHHHHHHHHHH
T ss_pred             eecCC-----------C----eEEEeccCHHHHHHHHHHHHHHHh
Confidence            99983           1    999986 88999999999998765

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.20  E-value=1.2e-10  Score=85.22  Aligned_cols=97  Identities=13%  Similarity=0.031  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +++++++.++++++.+.+.|++.|+++..|. |+|+|+.++..   .         +..+++..|. ++||.+.||+.|+
T Consensus       292 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-g~~~~~~~~~~---~---------~~~~l~~~l~-~~gi~v~~~~~~~  357 (398)
T 3a2b_A          292 NEPEHIEKLWKNTDYAKAQLLDHGFDLGATE-SPILPIFIRSN---E---------KTFWVTKMLQ-DDGVFVNPVVSPA  357 (398)
T ss_dssp             HCTHHHHHHHHHHHHHHHHHHHTTCCBCSCC-SSEEEEECCCH---H---------HHHHHHHHHH-HTTEECEEECTTT
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhcCCCcCCCC-CCEEEEEcCCH---H---------HHHHHHHHHH-HCCcEEEeeCCCC
Confidence            4568899999999999999998888877776 57999998742   1         3667888876 5699999999886


Q ss_pred             cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ...    +.+++|++++.  +++++++++++|.++++
T Consensus       358 ~~~----~~~~iRis~~~~~~~e~i~~~~~~l~~~l~  390 (398)
T 3a2b_A          358 VPA----EESLIRFSLMATHTYDQIDEAIEKMVKVFK  390 (398)
T ss_dssp             SCG----GGCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCC----CCceEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            431    46899999996  88999999999998875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.17  E-value=4.4e-10  Score=80.98  Aligned_cols=94  Identities=11%  Similarity=0.141  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+|++++++.++++++.+.+.|+++ ++. +..|.|+ |+|++++..             +..+++..|. ++||.+.||
T Consensus       262 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~l~~~l~-~~gi~v~~g  326 (361)
T 3ftb_A          262 TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLENI-------------SGEKLYDSLL-KEDIVIRRC  326 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEESSS-------------CHHHHHHHHH-TTTEECEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcCCC-------------CHHHHHHHHH-HCCeEEeeC
Confidence            5799999999999999999999988 677 6666655 788888751             3668888875 669999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCCh--hHHHHHHHHHHH
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKD--ETLREASSILQT  120 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~~l~~  120 (126)
                      +.|+..     +++++|++++.++  +.+.++++++.+
T Consensus       327 ~~~~~~-----~~~~iRis~~~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          327 CNFIGL-----DDSFVRFAIKDEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             TTSTTC-----CTTEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC-----CCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            999753     4789999999733  467777766654

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.14  E-value=1.7e-10  Score=83.14  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .|.+++++.+ ++++.+.+.|+++ ++.+.++ +|.|+|++++..             +..++++.|..+.||.+.||+.
T Consensus       245 ~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~~g~~  309 (350)
T 3fkd_A          245 QFTLPIRKWQ-RNTVDFITALNRLDGVEVHPS-GTTFFLLRLKKG-------------TAAELKKYMLEEYNMLIRDASN  309 (350)
T ss_dssp             TTCCCHHHHH-HHHHHHHHHHHHSTTEEECCC-SSSEEEEEESSS-------------CHHHHHHHHHHTTCEECEECTT
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhcCCCcEECCC-CCcEEEEECCCC-------------CHHHHHHHHHHHCCEEEEeCcc
Confidence            4666666666 8899999999988 7777554 455788988752             2668888876549999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+..     .++++|++++. +++++..++.|.++.+
T Consensus       310 f~~~-----~~~~iRis~~~-~~~~~~l~~al~~~~~  340 (350)
T 3fkd_A          310 FRGL-----DESYVRITTQR-PAQNQLFIKALETFLE  340 (350)
T ss_dssp             STTC-----CTTEEEEECCC-HHHHHHHHHHHHHHHT
T ss_pred             CCCC-----CCCEEEEEcCC-HHHHHHHHHHHHHHHH
Confidence            9753     47899999996 3333444444444444

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.14  E-value=4.9e-10  Score=81.08  Aligned_cols=94  Identities=14%  Similarity=0.089  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..|++++++.++++++.+.+.|+++ |+.+ .|.+|+|+|++++.               ..++...| .++||.+.||+
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~~~~~~~~~~---------------~~~l~~~l-~~~gi~v~~~~  334 (367)
T 3euc_A          272 VAVLDEQAAQLRAERSRVAEGMAAHGGVTV-FPSAANFLLARVPD---------------AAQTFDRL-LARKVLIKNVS  334 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTCEE-CCCSSSEEEEECSC---------------HHHHHHHH-HTTTEECEECG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCCCCeEEEEECCC---------------HHHHHHHH-HHCCeEEEECC
Confidence            6789999999999999999999988 7875 56677799998861               45677775 68899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .|+..     ..+++|++++ ++++++..++.|.++++
T Consensus       335 ~~~~~-----~~~~iRis~~-~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          335 KMHPL-----LANCLRVTVS-TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             GGCGG-----GTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred             ccCCC-----CCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence            88743     4789999998 67788999999988764

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.13  E-value=9.4e-10  Score=79.53  Aligned_cols=92  Identities=8%  Similarity=-0.042  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++++++.++++++.+.+.|+++|+++.++.|+ |+|++++..             +..++.+.|. ++||.+.||+.
T Consensus       273 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~l~-~~gi~v~~g~~  337 (365)
T 3get_A          273 DEFTEKTLENNFSQMELYKEFAKKHNIKIIDSYTN-FITYFFDEK-------------NSTDLSEKLL-KKGIIIRNLKS  337 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSS-EEEEECSSS-------------CHHHHHHHHH-TTTEECEECGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEECCCCCe-EEEEECCCC-------------CHHHHHHHHH-HCCEEEEECcc
Confidence            47899999999999999999999888887666655 689998752             2667888865 78999999998


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+        ++++|++++ ++++++..++.|.+++
T Consensus       338 ~~--------~~~iRis~~-~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          338 YG--------LNAIRITIG-TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             GT--------CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred             CC--------CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence            86        368999999 5777889998888765

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.11  E-value=1.3e-09  Score=78.41  Aligned_cols=92  Identities=13%  Similarity=0.136  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .|++++++.++++++.+.+.|+++++.+.++ +|.|+|++++.              +..++...|. ++||.+. |+.+
T Consensus       260 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~v~-g~~~  322 (354)
T 3ly1_A          260 AFITYSKKSNDVSRQILLKALEDLKLPYLPS-EGNFVFHQLVV--------------PLKDYQTHMA-DAGVLIG-RAFP  322 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-CSSEEEEECSS--------------CHHHHHHHHH-HTTEECC-CCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC-CceEEEEECCC--------------CHHHHHHHHH-HCCEEEe-ecCC
Confidence            7899999999999999999998888877655 55679999874              2567888865 7899988 7644


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      +       .++++|++++ +++++++.++.|.+++++
T Consensus       323 ~-------~~~~iRis~~-~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          323 P-------ADNWCRISLG-TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             T-------CTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred             C-------CCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence            3       3689999998 577889999999988875

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.10  E-value=1.6e-09  Score=78.28  Aligned_cols=91  Identities=10%  Similarity=0.041  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..|++++++.++++++.+.+.|+++ |+.+.++. |.|+|++++.              +..++.+.|. ++||.+.||+
T Consensus       271 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~~~~~~~--------------~~~~~~~~l~-~~gi~v~~g~  334 (363)
T 3ffh_A          271 QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPAN-GNFVLIDLGI--------------EAGTIFSYLE-KNGYITRSGA  334 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC-SSEEEEECSS--------------CHHHHHHHHH-HTTEECEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCC-CeEEEEECCC--------------CHHHHHHHHH-HCCeEEEeCc
Confidence            3789999999999999999999984 88876555 5578999874              2567888865 7899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      .|+.       ++++|++++ ++++++..++.|.++
T Consensus       335 ~~~~-------~~~iRis~~-~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          335 ALGF-------PTAVRITIG-KEEDNSAVIALLEKL  362 (363)
T ss_dssp             TTTC-------TTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred             cCCC-------CCeEEEECC-CHHHHHHHHHHHHHh
Confidence            9863       579999998 677889998888765

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.07  E-value=1.3e-09  Score=79.39  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+++++++.++++++.+.+.|++.|+++.+|.|+ |+|+.++...            +..+++..|. ++||.+.|+..+
T Consensus       295 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~l~-~~gi~v~~~~~~  360 (399)
T 3tqx_A          295 TEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNHP-IIPVMLGDAQ------------LATNMADHLL-QEGIYVVGFSYP  360 (399)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS-EEEEEEECHH------------HHHHHHHHHH-HTTEECCEECTT
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-EEEEEeCCHH------------HHHHHHHHHH-HCCCEEeeeCCC
Confidence            5688999999999999999999888887766665 6788887531            3668888876 679999997654


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...    .+++++|++++  .+++++++++++|.+++++
T Consensus       361 ~~~----~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  395 (399)
T 3tqx_A          361 VVP----MGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK  395 (399)
T ss_dssp             TSC----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCC----CCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence            322    25689999998  3889999999999988763

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.04  E-value=2.5e-09  Score=77.53  Aligned_cols=89  Identities=12%  Similarity=0.044  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC-CCC
Q psy788            9 YFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP-PSA   86 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p-g~~   86 (126)
                      |++++++.++++++.+.+.|++++ +....|.+|+|+|++++.               ..++++.| .++||.+.| |+.
T Consensus       264 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~L-~~~gI~v~~~g~~  327 (356)
T 1fg7_A          264 AMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKA---------------SSAVFKSL-WDQGIILRDQNKQ  327 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETT---------------HHHHHHHH-HHTTEECEECTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECCC---------------HHHHHHHH-HHCCEEEEECCCC
Confidence            499999999999999999999875 333456788899999861               45788887 588999999 888


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                      |+.       ++++|++++. ++++++.++.|.++
T Consensus       328 ~~~-------~~~iRis~~~-~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          328 PSL-------SGCLRITVGT-REESQRVIDALRAE  354 (356)
T ss_dssp             TTC-------TTEEEEECCC-HHHHHHHHHHHHTC
T ss_pred             CCC-------CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence            863       4699999986 67788888888654

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.04  E-value=1.8e-09  Score=78.12  Aligned_cols=94  Identities=7%  Similarity=0.000  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..|++++++.++++++.+.+.|+++ ++.+.++ +|.|+|++++..              ..++++.|. ++||.+.||+
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~--------------~~~l~~~l~-~~gi~v~~g~  326 (364)
T 1lc5_A          263 SAWQQATWHWLREEGARFYQALCQLPLLTVYPG-RANYLLLRCERE--------------DIDLQRRLL-TQRILIRSCA  326 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-SSSEEEEEESCT--------------TCCHHHHHH-TTTEECEECT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-CCeEEEEECCCc--------------HHHHHHHHH-HCCcEEeeCc
Confidence            4689999999999999999999887 7777654 556788888631              335777765 7799999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      .|+..     .++++|++++. .++++..++.|.+++
T Consensus       327 ~~~~~-----~~~~iRis~~~-~~~~~~l~~~l~~~~  357 (364)
T 1lc5_A          327 NYPGL-----DSRYYRVAIRS-AAQNERLLAALRNVL  357 (364)
T ss_dssp             TSTTC-----CTTEEEEECCC-HHHHHHHHHHHHHHC
T ss_pred             ccCCC-----CCCEEEEEeCC-HHHHHHHHHHHHHHh
Confidence            98642     36899999986 334445555554443

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.00  E-value=3.5e-09  Score=77.45  Aligned_cols=95  Identities=12%  Similarity=0.053  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      +.+++.++++++.+.+.|++.|+++. |.+|.|+|++++..   .         +..++.+.|. ++||.+.||+.|+..
T Consensus       299 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~---~---------~~~~l~~~l~-~~gi~v~~~~~~~~~  364 (401)
T 1fc4_A          299 SELRDRLWANARQFREQMSAAGFTLA-GADHAIIPVMLGDA---V---------VAQKFARELQ-KEGIYVTGFFYPVVP  364 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBC-CSSSSEEEEEEECH---H---------HHHHHHHHHH-HTTEECCEECTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccc-CCCCCEEEEEcCCh---H---------HHHHHHHHHH-HCCcEEeeecCCCCC
Confidence            57889999999999999998887776 56777899998742   1         3567888865 679999999887643


Q ss_pred             cccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           91 EHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                          .+.+++|++++  .+++++++++++|.++++
T Consensus       365 ----~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  395 (401)
T 1fc4_A          365 ----KGQARIRTQMSAAHTPEQITRAVEAFTRIGK  395 (401)
T ss_dssp             ----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                24679999998  388999999999988765

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.00  E-value=2.4e-09  Score=76.65  Aligned_cols=97  Identities=5%  Similarity=-0.075  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPD-GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~-gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++++++.++++++.+.+.|++.|+++..|+ ++.++|++++..   .         +..++++.|. ++||.+.||+.
T Consensus       248 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l~-~~gi~v~~~~~  314 (352)
T 1iug_A          248 PRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEG---V---------PYARVKEAFA-QRGAVIAGGQG  314 (352)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTT---C---------CHHHHHHHHH-TTTEECEECCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCC---C---------CHHHHHHHHH-HCCEEEEeCCC
Confidence            45788999999999999999988888877775 788999998742   1         3667888875 77999999983


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      +.       .++++|++++.  +++++++++++|.+++++
T Consensus       315 ~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          315 PL-------KGKVFRLSLMGAYDRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             GG-------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cc-------CCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence            21       36899999995  688999999999887653

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.00  E-value=7.1e-09  Score=75.09  Aligned_cols=95  Identities=12%  Similarity=-0.001  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +++++++.++++++.+.+.|+++|+++..|++   +.++|++++..   .         +..++++.|. ++||.+.||+
T Consensus       278 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l~-~~gi~v~~~~  344 (386)
T 2dr1_A          278 GKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPG---I---------KGDEVYEAMR-KRGFELAKGY  344 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTT---C---------CHHHHHHHHH-HTTEECEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCC---C---------CHHHHHHHHH-HCCeEEecCc
Confidence            37789999999999999999988888777753   77899998742   1         3667888876 5599999998


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .|.       ..+++|++++.  +++++++++++|.++++
T Consensus       345 ~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  377 (386)
T 2dr1_A          345 GSV-------KEKTFRIGHMGYMKFEDIQEMLDNLREVIN  377 (386)
T ss_dssp             GGG-------TTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccc-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            653       35799999994  88999999999988765

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=98.99  E-value=5.8e-09  Score=75.99  Aligned_cols=97  Identities=8%  Similarity=0.000  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .+++++++.++++++.+.+.|++.|+++..|+|   +.++|+.++..   .         +..++++.|.++.||.+.||
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l~~~~gi~v~~g  358 (393)
T 1vjo_A          291 EGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDG---V---------DGKAVARRLLNEHNIEVGGG  358 (393)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTT---C---------CHHHHHHHHHHHHCEECEEC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCC---C---------CHHHHHHHHHhhCCEEEecC
Confidence            367889999999999999999888888877765   34677777632   1         36678888764449999999


Q ss_pred             CCcccCcccCCCCCeEEEEe-e--CChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCF-F--KKDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~-~--~~~e~i~~~~~~l~~~~~  123 (126)
                      +.|.       .++++|+++ +  .+++.+++++++|.++++
T Consensus       359 ~~~~-------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          359 LGEL-------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR  393 (393)
T ss_dssp             CGGG-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             cccc-------CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence            9775       257999994 3  366779999999988763

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=98.99  E-value=9.3e-09  Score=74.31  Aligned_cols=94  Identities=14%  Similarity=0.112  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..|++++++.++++++.+.+.|.++++.+.++ +|.|+|+.++..             +..++.+.| .++||.+.||+.
T Consensus       260 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~l~~~l-~~~gi~v~~~~~  324 (360)
T 3hdo_A          260 QAYLSECCRRIRETREWFTTELRSIGYDVIPS-QGNYLFATPPDR-------------DGKRVYDGL-YARKVLVRHFSD  324 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-SSSEEEEECTTC-------------CHHHHHHHH-HHTTEECBCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC-CccEEEEECCCC-------------CHHHHHHHH-HHCCEEEEECCC
Confidence            56899999999999999999999888877655 555888887642             366788876 588999999876


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +.       .++++|+++++ +++++..++.|.++.+
T Consensus       325 ~~-------~~~~iRis~~~-~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          325 PL-------LAHGMRISIGT-REEMEQTLAALKEIGE  353 (360)
T ss_dssp             TT-------TTTSEEEECCC-HHHHHHHHHHHHHHHC
T ss_pred             CC-------CCCEEEEEcCC-HHHHHHHHHHHHHHhc
Confidence            22       46899999994 6667777777776654

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=98.97  E-value=4.1e-09  Score=77.13  Aligned_cols=97  Identities=7%  Similarity=-0.009  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      ++++++.++++++.+.+.|.+.|+++..|.|+ ++|++++..   .         +..++++.|+.+.||.+.|+..|+.
T Consensus       300 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~---~---------~~~~~~~~L~~~~gi~v~~~~~~~~  366 (401)
T 2bwn_A          300 GQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH-IVPVVIGDP---V---------HTKAVSDMLLSDYGVYVQPINFPTV  366 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS-CEEEECCCH---H---------HHHHHHHHHHHHHCEECCEECTTTS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC-eEEEEeCCh---H---------HHHHHHHHHHhcCCEEEeecCCCCC
Confidence            47889999999999999998878888778887 788988742   1         3567888875578999999987764


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .    .+.+++|++++.  ++++++.++++|.++++
T Consensus       367 ~----~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~  398 (401)
T 2bwn_A          367 P----RGTERLRFTPSPVHDLKQIDGLVHAMDLLWA  398 (401)
T ss_dssp             C----TTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred             C----CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence            2    145799999994  88899999999988765

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=98.96  E-value=1.2e-08  Score=73.13  Aligned_cols=95  Identities=6%  Similarity=-0.002  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcceEEEEeeCCc-ccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIP---DGGYFMVADWTQL-RPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p---~gg~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++++++.++++++.+.+.|+++|+++..|   .+|+++|++++.. .  .         +..++.+.|. ++||.+.||+
T Consensus       264 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~-~~gi~v~~~~  331 (366)
T 1m32_A          264 VAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQ--Y---------RFSEFYRRLK-EQGFVIYPGK  331 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTT--C---------CHHHHHHHHH-HTTEECEECC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCC--C---------CHHHHHHHHH-HCCEEEECCc
Confidence            67789999999999999998877776554   4788999998741 1  1         3667888875 6799999998


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .|.        .+++|++++.  ++++++.++++|.+++++
T Consensus       332 ~~~--------~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          332 VSQ--------SDCFRIGNIGEVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             CSS--------SCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             CCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            772        4789999995  688999999999887653

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=98.95  E-value=1.1e-08  Score=74.17  Aligned_cols=92  Identities=12%  Similarity=-0.069  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+|++++++.++++++.+.+.|.+.|+++.+ .+|.|+|++++.              +..++.+.| .++||.+.||  
T Consensus       277 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~--------------~~~~l~~~l-~~~gi~v~~~--  338 (369)
T 3cq5_A          277 SADTLGTVEKLSVERVRVAARLEELGYAVVP-SESNFVFFGDFS--------------DQHAAWQAF-LDRGVLIRDV--  338 (369)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHTCEEEC-CSSSEEEEECCS--------------SHHHHHHHH-HHTTEECBCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEEEEECCC--------------CHHHHHHHH-HHCCEEEEEC--
Confidence            3588999999999999999999877888764 456688998862              256788886 5889999998  


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN  125 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~  125 (126)
                       +       .++++|++++ ++++++..++.|.+++..|
T Consensus       339 -~-------~~~~iRis~~-~~~~i~~~~~~l~~~~~~~  368 (369)
T 3cq5_A          339 -G-------IAGHLRTTIG-VPEENDAFLDAAAEIIKLN  368 (369)
T ss_dssp             -S-------CTTEEEEECC-CHHHHHHHHHHHHHHHTTC
T ss_pred             -C-------CCCeEEEEeC-CHHHHHHHHHHHHHHHhcc
Confidence             2       2578999999 5778899999999888765

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.94  E-value=1.4e-08  Score=73.65  Aligned_cols=96  Identities=9%  Similarity=-0.010  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +++.+++.++++++.+.+.|+++|+++..|+    +++++|+.++..   .         +..++.+.|+++.||.+.||
T Consensus       284 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l~~~~gi~v~~g  351 (393)
T 3kgw_A          284 GLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAG---Y---------NWRDIVSYVLDHFSIEISGG  351 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTT---B---------CHHHHHHHHHHHHCEECBCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCC---C---------CHHHHHHHHHHhCCEEEeCC
Confidence            4788999999999999999998887776444    367888888752   1         36688888765559999999


Q ss_pred             CCcccCcccCCCCCeEEEEe-eC--ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCF-FK--KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~-~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +.+.       ..+++|+++ +.  +++++++++++|.++++
T Consensus       352 ~~~~-------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~  386 (393)
T 3kgw_A          352 LGPT-------EERVLRIGLLGYNATTENVDRVAEALREALQ  386 (393)
T ss_dssp             CGGG-------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             cccC-------CCCEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            8543       357999998 63  78999999999998876

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=98.94  E-value=1.2e-08  Score=72.93  Aligned_cols=94  Identities=7%  Similarity=-0.026  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCC--cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPD--GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~--gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ++++++.++++++.+.+.|++.|+++..|.  +++++|++++..   .         +..++.+.|. ++||.+.||+.|
T Consensus       253 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l~-~~gi~v~~g~~~  319 (353)
T 2yrr_A          253 VAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEG---V---------DADRLVRALY-AEGVAVAGGIGP  319 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTT---C---------CHHHHHHHHH-HTTEECEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCC---C---------CHHHHHHHHH-HCCEEEeCCccc
Confidence            678899999999999999988777776554  788888988632   1         3667888875 669999999977


Q ss_pred             ccCcccCCCCCeEEEEee-C-ChhHHH-HHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF-K-KDETLR-EASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~-~-~~e~i~-~~~~~l~~~~~  123 (126)
                      ..       ++++|+++. . ++++++ .++++|.++++
T Consensus       320 ~~-------~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          320 TR-------GQVLRLGLMGEGARREAYQAFLKALDRALA  351 (353)
T ss_dssp             GT-------TTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             cC-------CCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence            42       578999994 3 677777 99999988764

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=98.93  E-value=1.2e-08  Score=74.27  Aligned_cols=97  Identities=10%  Similarity=-0.072  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcc----eEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGG----YFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+++++++.++++++.+.+.|+++|+++..|+++    .++|+.++..   .         +..++.+.|+++.||.+.|
T Consensus       278 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~L~~~~gi~v~~  345 (396)
T 2ch1_A          278 EGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKG---V---------DWWKVSQYAMNNFSLEVQG  345 (396)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTT---C---------CHHHHHHHHHHHHCBCCBC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCC---C---------CHHHHHHHHHHhCCEEEec
Confidence            4678899999999999999998888888777764    4788888642   1         3668888876556999999


Q ss_pred             CCCcccCcccCCCCCeEEEEe-eC--ChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCF-FK--KDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~-~~--~~e~i~~~~~~l~~~~~  123 (126)
                      |..+.       .++++|+++ +.  ++++++.++++|.++++
T Consensus       346 g~~~~-------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~  381 (396)
T 2ch1_A          346 GLGPT-------FGKAWRVGIMGECSTVQKIQFYLYGFKESLK  381 (396)
T ss_dssp             CCGGG-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             Ccccc-------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence            87543       357999999 42  78889999999988775

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=98.93  E-value=1.8e-08  Score=71.90  Aligned_cols=91  Identities=14%  Similarity=0.143  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .++.+.++.+.++++.+.+.|+++|+++.+|+|+ |+|+..+.               ..++.+.| .++||.+.||+.|
T Consensus       245 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~---------------~~~~~~~l-~~~gi~v~~g~~~  307 (337)
T 3p1t_A          245 RAREAHIAKTLAQRRRVADALRGLGYRVASSEAN-FVLVENAA---------------GERTLRFL-RERGIQVKDAGQF  307 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSS-EEEEECTT---------------THHHHHHH-HHTTEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCcCEECCCCCe-EEEEEcCC---------------HHHHHHHH-HHCCeEEEECccC
Confidence            3566667777888899999999888888888777 55555542               33455554 6889999999999


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +.       ++++|++++. +++++..++.|.++.+
T Consensus       308 ~~-------~~~iRis~~~-~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          308 GL-------HHHIRISIGR-EEDNDRLLAALAEYSD  335 (337)
T ss_dssp             TC-------CSEEEEECCC-HHHHHHHHHHHHHHTC
T ss_pred             CC-------CCeEEEecCC-HHHHHHHHHHHHHHhh
Confidence            63       5799999995 5566777776666543

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=98.91  E-value=2.3e-08  Score=73.03  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++.+++.++++++.+.+.|++.|+++.. |.+|+|+|++++..+  .         +..++.+.| .++||.+.||+.
T Consensus       277 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l-~~~gi~v~~~~~  344 (407)
T 2dkj_A          277 PEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKG--L---------TGKEAEERL-DAVGITVNKNAI  344 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---------CHHHHHHHH-HHTTEECEECCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCCceEEEEECcccC--C---------CHHHHHHHH-HHcCceecCCcC
Confidence            578899999999999999999988877754 467889999987421  1         355777776 689999999987


Q ss_pred             cccCcccCCCCCeEEEEee------CChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFF------KKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~------~~~e~i~~~~~~l~~~~~~  124 (126)
                      |..... ...++++|++++      .++++++.++++|.+++++
T Consensus       345 ~~~~~~-~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          345 PFDPKP-PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             TTCSSC-TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             cccccc-ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            621100 013578999995      5788899999999887653

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=98.91  E-value=3.3e-09  Score=78.35  Aligned_cols=85  Identities=13%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ++|++++++.|+++++.+.+.|+++    ++.+..|+||||+|+.++                ...+ ..++.+.||.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------------~~~~-~~~l~~~gI~v~  393 (420)
T 4f4e_A          331 VQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT----------------SAQV-DRLREEFGIYAV  393 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC----------------HHHH-HHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC----------------HHHH-HHHHHhCCEEec
Confidence            5679999999999999999999986    688888999999998664                2233 344568899998


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |+               .|++++. +++++++++++|.++++
T Consensus       394 ~~---------------~Ris~~~~~~~~i~~~~~~l~~~l~  420 (420)
T 4f4e_A          394 ST---------------GRICVAALNTRNLDVVANAIAAVLK  420 (420)
T ss_dssp             TT---------------SEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             CC---------------CeEEEecCCHHHHHHHHHHHHHHhC
Confidence            83               1999997 77889999999988763

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=98.90  E-value=3.4e-09  Score=77.34  Aligned_cols=83  Identities=10%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..|++++++.|+++++.+.+.|+++    ++.+..|++|+|+|++++                ...+. .++.++||.+.
T Consensus       309 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~-~~l~~~gi~v~  371 (397)
T 3fsl_A          309 LKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------------AAQVD-RLREEFGVYLI  371 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----------------HHHHH-HHHHTTCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC----------------HHHHH-HHHHhCCEEEC
Confidence            5789999999999999999999986    688888999999998764                22343 44678999998


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                      ||+               |++++. +++++++++++|.++
T Consensus       372 ~g~---------------Ris~~~~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          372 ASG---------------RMCVAGLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             TTC---------------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CCC---------------eEEEEecCHhhHHHHHHHHHhh
Confidence            852               999997 788899999999875

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.90  E-value=1.4e-08  Score=75.28  Aligned_cols=97  Identities=10%  Similarity=-0.000  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +..+++.++++++.+.+.|++.|+++. ++..|.++|+.++...            +..++++.|. ++||.+.||..|+
T Consensus       314 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~-~~Gi~v~~~~~~~  380 (427)
T 2w8t_A          314 AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE------------QAAMMWQALL-DGGLYVNMARPPA  380 (427)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEEEESSHH------------HHHHHHHHHH-HTTEECEEECTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEEEECCHH------------HHHHHHHHHH-HCCeEEeeeCCCC
Confidence            477899999999999999988788876 5524568899987521            3667888875 6699999998886


Q ss_pred             cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..    .+.+++|++++.  ++++++.++++|.++++
T Consensus       381 ~~----~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~  413 (427)
T 2w8t_A          381 TP----AGTFLLRCSICAEHTPAQIQTVLGMFQAAGR  413 (427)
T ss_dssp             SC----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CC----CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            53    246799999996  88999999999988765

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=98.90  E-value=3.2e-09  Score=79.40  Aligned_cols=86  Identities=13%  Similarity=0.175  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC---C------CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCC
Q psy788            8 CYFYTISEELRPKREILADALDKA---G------MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVK   78 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~---g------~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g   78 (126)
                      ++++.++++|+++|+.+.+.|.++   +      +.+..|++|||+|+.++                . +++..++.+.|
T Consensus       348 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------------~-~~~~~ll~~~g  410 (448)
T 3meb_A          348 DNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT----------------P-EHVDYLKEKWS  410 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----------------H-HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----------------H-HHHHHHHHhCC
Confidence            458999999999999999999887   3      66778999999998664                1 45566677889


Q ss_pred             eeEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           79 LQGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        79 V~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      |.+.||+              .||||+. +.+++++++++|.+++++
T Consensus       411 V~v~~G~--------------gRis~a~~~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          411 IYLVKAG--------------GRMSMCGLTESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             EEECSGG--------------GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             EEEeCCC--------------cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            9999974              1999997 888899999999988763

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=98.89  E-value=3.3e-09  Score=77.66  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .+|++++++.|+++|+.+.+.|.+++    +++..|+||||+|+.++                . +++..++.++||.+.
T Consensus       312 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~ll~~~gi~v~  374 (401)
T 7aat_A          312 LVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----------------P-EQVERLTKEFSIYMT  374 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----------------H-HHHHHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC----------------H-HHHHHHHHhCCEecc
Confidence            56789999999999999999998874    77788999999998654                2 233566678899986


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWR  122 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~  122 (126)
                      |+               +|++|+. +.++++.+++.|.+++
T Consensus       375 ~~---------------~Ris~~~~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          375 KD---------------GRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             TT---------------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             CC---------------CeEEeccCChhhHHHHHHHHHHHh
Confidence            42               5999985 6666999999998765

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=98.89  E-value=2.6e-08  Score=72.40  Aligned_cols=96  Identities=11%  Similarity=-0.022  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPD---GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~---gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+..+++.++++++.+.+.|.+.|+++..|.   +++++|++++..   .         +..++.+.|..+.||.+.||+
T Consensus       280 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~L~~~~gi~v~~g~  347 (393)
T 2huf_A          280 GLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQG---V---------DWLKAAQYAMKTYLVEISGGL  347 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTT---C---------CHHHHHHHHHHHHCEECBCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCC---C---------CHHHHHHHHHHhCCEEEecCc
Confidence            3677889999999999999988887776663   466888888632   1         366788887655699999998


Q ss_pred             CcccCcccCCCCCeEEEEe-e--CChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCF-F--KKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~-~--~~~e~i~~~~~~l~~~~~  123 (126)
                      .|.       ..+++|+++ +  .++++++.++++|.++++
T Consensus       348 ~~~-------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~  381 (393)
T 2huf_A          348 GPT-------AGQVFRIGLMGQNATTERVDRVLQVFQEAVA  381 (393)
T ss_dssp             GGG-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             ccc-------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence            764       357999999 6  267789999999988765

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=98.89  E-value=1e-08  Score=73.52  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+|++++++.++++++.+.+.|.++|+.+. |.+|+|+|++++..             +..+++..|. ++||.+.|   
T Consensus       248 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~l~-~~gi~v~~---  309 (335)
T 1uu1_A          248 REIFEERTKFIVEERERMKSALREMGYRIT-DSRGNFVFVFMEKE-------------EKERLLEHLR-TKNVAVRS---  309 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CCCSSEEEEECCTH-------------HHHHHHHHHH-HHTEEEEE---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCcEEc-CCCCeEEEEECCCC-------------CHHHHHHHHH-HCCEEEEE---
Confidence            358999999999999999999988777664 56678999998741             3567888875 77999998   


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTW  121 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~  121 (126)
                       .        ++++|++++. ++++++++++|.++
T Consensus       310 -~--------~~~iRis~~~-~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          310 -F--------REGVRITIGK-REENDMILRELEVF  334 (335)
T ss_dssp             -E--------TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred             -C--------CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence             1        3689999987 45688888888754

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=98.88  E-value=7.8e-09  Score=77.26  Aligned_cols=85  Identities=16%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..+++.|+++|+++|+.+.+.|.+.|    +.+..+++|||.|+.++                . +.++. +++.||.++
T Consensus       327 ~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls----------------~-e~v~~-L~e~~Vy~~  388 (420)
T 4h51_A          327 EAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS----------------K-AQCEY-CQNHNIFIT  388 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC----------------H-HHHHH-HHHTTEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC----------------H-HHHHH-HHhCCEEEc
Confidence            35688999999999999999999873    56678899999996443                2 22354 468899877


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      ||           +    ||||+. +++.++..+++|.+++++
T Consensus       389 ~~-----------g----Ris~Agl~~~ni~~~a~aI~~vvr~  416 (420)
T 4h51_A          389 VS-----------G----RANMAGLTHETALMLAQTINDAVRN  416 (420)
T ss_dssp             TT-----------C----EEEGGGCCHHHHHHHHHHHHHHHC-
T ss_pred             CC-----------C----EEEeccCCHHHHHHHHHHHHHHHHH
Confidence            63           1    999997 999999999999888763

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=98.87  E-value=5.7e-09  Score=75.88  Aligned_cols=95  Identities=6%  Similarity=-0.104  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +++++++.++++++.+.+.|+++|+++.+ .+|.++|++++..   .         +..++.+.|. ++||.+.||+.|+
T Consensus       287 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~---~---------~~~~l~~~l~-~~gi~v~~~~~~~  352 (384)
T 1bs0_A          287 EGDARREKLAALITRFRAGVQDLPFTLAD-SCSAIQPLIVGDN---S---------RALQLAEKLR-QQGCWVTAIRPPT  352 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCEECS-CCSSBCCEEEESH---H---------HHHHHHHHHH-HTTEECCEECTTS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCEEEEEeCCH---H---------HHHHHHHHHH-HCCcEEEeecCCC
Confidence            66789999999999999999888877764 5566778888642   1         3667888875 6799999999876


Q ss_pred             cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           89 SDEHKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                      ..    .+.+++|++++.  +++++++++++|.++
T Consensus       353 ~~----~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          353 VP----AGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             SC----TTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             CC----CCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            42    246899999995  789999999998764

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=98.87  E-value=1.7e-08  Score=73.77  Aligned_cols=97  Identities=9%  Similarity=-0.044  Sum_probs=75.3

Q ss_pred             hH-HHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CY-FYTISEELRPKREILADALDKAGMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~-l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+ ++++++.++++++.+.+.|.+.|+++..|++   +.++|+.++..   .         +..++.+.|.++.||.+.|
T Consensus       285 ~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~L~~~~gi~v~~  352 (416)
T 3isl_A          285 EEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGG---I---------DGESVRDMLLAQFGIEIAS  352 (416)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTT---C---------CHHHHHHHHHHHHCEECBC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCC---C---------CHHHHHHHHHHhCCEEEec
Confidence            34 7899999999999999999988888777765   67888888642   1         3668888876555999999


Q ss_pred             CCCcccCcccCCCCCeEEEEee-C-ChhH-HHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFF-K-KDET-LREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~-~-~~e~-i~~~~~~l~~~~~  123 (126)
                      |+...       ..+++|+++. . +.++ +++++++|.++++
T Consensus       353 g~~~~-------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~  388 (416)
T 3isl_A          353 SFGPL-------AGKIWRIGTMGYSCRKENVLFVLAGLEAVLL  388 (416)
T ss_dssp             CCSTT-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCC-------CCCEEEEecccCCCcHHHHHHHHHHHHHHHH
Confidence            87322       4689999993 2 4444 9999999998876

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=98.86  E-value=2.2e-08  Score=73.13  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++.+++.++++++.+.+.|++.|+++..| .+|+++|++++..+  .         +..++.+.| .++||.+.||+.
T Consensus       276 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l-~~~gi~v~~g~~  343 (405)
T 2vi8_A          276 DDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ--L---------TGKTAEKVL-DEVGITVNKNTI  343 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---------CHHHHHHHH-HHHTEECEEECC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCC--C---------CHHHHHHHH-HHcCceeccCcC
Confidence            5788999999999999999998888887665 46889999997421  1         255777775 688999999874


Q ss_pred             cccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~  123 (126)
                      +..... ...++++|++++.      ++++++.++++|.++++
T Consensus       344 ~~~~~~-~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~  385 (405)
T 2vi8_A          344 PYDPES-PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             TTCSSC-TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             ccccCC-CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence            211000 0135789999984      68999999999998876

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=98.86  E-value=5e-09  Score=77.03  Aligned_cols=84  Identities=11%  Similarity=0.072  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+++++++.|+++++.+.+.|.+.|    +++..|+||||+|+.++                . +++..+++++||.+.|
T Consensus       321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~ll~~~gv~v~p  383 (409)
T 4eu1_A          321 KELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLT----------------R-EQVELLRSEYHIYMTL  383 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCC----------------H-HHHHHHHHHHCEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCC----------------H-HHHHHHHHcCCEEEcC
Confidence            4588999999999999999999876    78888999999996543                2 3456677788999887


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |               .|++++. ++++++..++.|.++++
T Consensus       384 ~---------------~Ri~~~~~~~~~i~~~~~~l~~~l~  409 (409)
T 4eu1_A          384 N---------------GRAAVSGLNSTNVEYVSQAIHNVTK  409 (409)
T ss_dssp             T---------------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             C---------------CEEEEEecCHhhHHHHHHHHHHHhC
Confidence            4               2888885 77779999999987753

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=98.85  E-value=1.1e-08  Score=73.71  Aligned_cols=91  Identities=10%  Similarity=-0.092  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788           15 EELRPKREILADALDKA-GMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH   92 (126)
Q Consensus        15 ~~~~~r~~~l~~~l~~~-g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~   92 (126)
                      +.+.++++.+.+.|.++ |+++. .|.++.|+|++++....          .+..++.+.| .++||.+.||+.|+..  
T Consensus       261 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~l-~~~GV~v~~g~~~~~~--  327 (359)
T 3pj0_A          261 AEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD----------EIGAILTKIQ-DETGVGISGYLQEKSA--  327 (359)
T ss_dssp             HHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH----------HHHHHHHHHH-HHHCEECCSCCEEEET--
T ss_pred             HHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc----------hhHHHHHHHH-HhcCcEecCCccccCC--
Confidence            34788888999999988 78874 67788899999875310          0245677775 5889999999988753  


Q ss_pred             cCCCCCeEEEEee-----CChhHHHHHHHHHHHh
Q psy788           93 KHLGENLIRYCFF-----KKDETLREASSILQTW  121 (126)
Q Consensus        93 ~~~~~~~~Rl~~~-----~~~e~i~~~~~~l~~~  121 (126)
                         +.+++|++++     .+.+.+++++++|.+.
T Consensus       328 ---~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          328 ---DVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             ---TEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             ---CceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence               4689999886     3678999999999865

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=98.85  E-value=2e-08  Score=72.96  Aligned_cols=95  Identities=6%  Similarity=-0.140  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++++++.++++++.+.+.|++.|+++..|.    ++.++|+.++..   .         +..++++.|.++.||.+.||+
T Consensus       268 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~L~~~~gi~v~~g~  335 (392)
T 2z9v_A          268 PEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDG---V---------DEKALRQAARARYGVVFSSGR  335 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTT---C---------CHHHHHHHHHHHHCEECEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCC---C---------CHHHHHHHHHhcCCEEEecCC
Confidence            677899999999999999988777776533    577889988632   1         366788887644499999998


Q ss_pred             CcccCcccCCCCCeEEEEe-e--CChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCF-F--KKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~-~--~~~e~i~~~~~~l~~~~~  123 (126)
                      .+.       .++++|+++ +  .++++++.++++|.++++
T Consensus       336 ~~~-------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~  369 (392)
T 2z9v_A          336 GET-------LGKLTRIGHMGPTAQPIYAIAALTALGGAMN  369 (392)
T ss_dssp             GGG-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CCC-------CCCeEEEeCcccccCHHHHHHHHHHHHHHHH
Confidence            653       357999994 6  488999999999988765

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=98.85  E-value=8.2e-09  Score=74.35  Aligned_cols=96  Identities=8%  Similarity=-0.073  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      |++.++ .+.++++.+.+.|.++ |+.+ ..|.+++|+|++++....  .        +..++.+.| .++||.+.||..
T Consensus       254 ~~~~~~-~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~l-~~~Gi~v~~g~~  321 (357)
T 3lws_A          254 RKDRMG-QYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA--D--------ISPKLEQVQ-EETGLGFVGYLV  321 (357)
T ss_dssp             HTTCHH-HHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH--H--------HHHHHHHHH-HHHCEESCSCCE
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH--H--------HHHHHHHHH-HhcCeEEecccc
Confidence            444443 3678888999999988 7887 467888899999975310  0        245677765 588999999976


Q ss_pred             cccCcccCCCCCeEEEEee-----CChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFF-----KKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~-----~~~e~i~~~~~~l~~~~  122 (126)
                      |..      +..++|++++     .+.+.+++++++|.+++
T Consensus       322 ~~~------~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          322 DKD------GYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             ECS------SEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             cCC------CceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            652      4579999987     36789999999998765

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=98.83  E-value=3.1e-08  Score=72.34  Aligned_cols=95  Identities=9%  Similarity=-0.045  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ++.+++.++++++.+.+.|++.|+++..|++   +.++|+.++..   .         +..++.+.|+.+.||.+.||..
T Consensus       288 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~l~~~~gi~v~~g~~  355 (411)
T 3nnk_A          288 LDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQG---I---------NGDQARKLMLEDFGIEIGTSFG  355 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTT---C---------CHHHHHHHHHHHHSEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCC---C---------CHHHHHHHHHHhcCeEEeCccC
Confidence            7889999999999999999988877766664   77889988742   1         3668888876556999999843


Q ss_pred             cccCcccCCCCCeEEEEe-eC--ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCF-FK--KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~-~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..       ..+++|+++ +.  +++++++++++|.++++
T Consensus       356 ~~-------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~  388 (411)
T 3nnk_A          356 PL-------HGKVWRIGTMGYNARKDCVMTTLSALEAVLN  388 (411)
T ss_dssp             GG-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CC-------CCCEEEEeCccCcCCHHHHHHHHHHHHHHHH
Confidence            22       357999998 53  68899999999998876

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=98.82  E-value=7.6e-09  Score=76.02  Aligned_cols=85  Identities=15%  Similarity=0.125  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.|++++++.|+++++.+.+.|++++    +++..|+||||+|+.++                ...+ ..++.+.||.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~~l~~~gi~v~  382 (412)
T 1yaa_A          320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT----------------PQMV-KRLEETHAVYLV  382 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC----------------HHHH-HHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC----------------HHHH-HHHHHhCCEEec
Confidence            35899999999999999999998875    88888999999997543                2344 555667899987


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |               ++|++++. ++++++.++++|.++++
T Consensus       383 ~---------------~~Ris~~~~~~~~i~~~~~~l~~~~~  409 (412)
T 1yaa_A          383 A---------------SGRASIAGLNQGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             T---------------TSEEEGGGCCTTTHHHHHHHHHHHHH
T ss_pred             c---------------CcEEEEccCCHhHHHHHHHHHHHHHH
Confidence            6               26999996 88889999999988765

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=98.82  E-value=4.4e-08  Score=71.94  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      +.+++.++++++.+.+.|++.++++.  .+|+++|+.++...            +..++++.|. ++||.+.|+..+...
T Consensus       307 ~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~------------~~~~~~~~L~-~~Gv~v~~~~~~~~~  371 (409)
T 3kki_A          307 DNRRQHLDRMARKLRIGLSQLGLTIR--SESQIIGLETGDER------------NTEKVRDYLE-SNGVFGSVFCRPATS  371 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSEEEEEEESHH------------HHHHHHHHHH-HTTEECEEECTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccC--CCCCEEEEEeCCHH------------HHHHHHHHHH-HCCceEeeeCCCCcC
Confidence            67899999999999999998876654  47889999987531            3567888875 669999996544322


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                          .+++++|++++.  +++++++++++|.+++++
T Consensus       372 ----~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          372 ----KNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             ----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence                257899999984  889999999999988764

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=98.81  E-value=4.7e-08  Score=70.35  Aligned_cols=103  Identities=14%  Similarity=0.035  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..+++++++.++++++.+.+.|.++ ++.+..|.+   +.++++.++..             +..++.+.| .++||.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l-~~~gi~v~  316 (382)
T 4hvk_A          251 AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------------EGESIVLSL-DMAGIQAS  316 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------------CHHHHHHHH-HHTTCBCB
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------------CHHHHHHHH-HHCCEEEe
Confidence            4578899999999999999999887 677765554   33666666532             366788876 57899999


Q ss_pred             CCCCcccCcccC------C------CCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHKH------L------GENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~~------~------~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ||+.|+......      .      .++++|++++.  +.++++..++.|.++++
T Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~  371 (382)
T 4hvk_A          317 TGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             CC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            998886531000      0      05899999994  77889999999988765

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=98.80  E-value=7.2e-08  Score=69.64  Aligned_cols=102  Identities=14%  Similarity=0.036  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++++.+++.++++++.+.+.|+++ ++++..|.+   +.++|+.++..             +..++.+.|. +.||.+.|
T Consensus       252 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~-~~gi~v~~  317 (382)
T 4eb5_A          252 MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------------EGESIVLSLD-MAGIQAST  317 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS-------------CHHHHHHHHH-HHTCBCBC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc-------------CHHHHHHHHH-HCCEEEec
Confidence            457889999999999999999887 777766652   44677887631             3667888864 78999999


Q ss_pred             CCCcccCccc------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEHK------------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~~------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      |+.|......            ...++++|++++.  ++++++.++++|.++++
T Consensus       318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (382)
T 4eb5_A          318 GSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             CCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            9876542000            0025799999993  78899999999988765

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=98.79  E-value=9.2e-08  Score=69.05  Aligned_cols=93  Identities=10%  Similarity=-0.078  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      .++++++.++++++.+.+.|+++|+++..|+    +++++|+.++..             +..++++.|. ++||.+.||
T Consensus       263 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~-~~gi~v~~g  328 (384)
T 3zrp_A          263 GIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKVA-------------DPQKVLAGTV-NEGVEFAPG  328 (384)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSSS-------------CHHHHHHHHH-TTTCCCEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCCC-------------CHHHHHHHHH-HCCEEEecC
Confidence            3788999999999999999998888877776    678889988752             3668888875 679999998


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..+.       . +++|++++.  ++++++.+++.|.++++
T Consensus       329 ~~~~-------~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~  361 (384)
T 3zrp_A          329 VHPA-------F-KYFRIGHMGWVTPNDAIIAISVIERTLR  361 (384)
T ss_dssp             CCTT-------C-CEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCC-------c-CEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence            7532       2 799999883  78899999999988876

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=98.79  E-value=7.2e-08  Score=70.63  Aligned_cols=95  Identities=12%  Similarity=0.141  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccC--C--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVI--P--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~--p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++++++.++++++.+.+.|+++ |+++..  |  .+++++|++++..   .         +..++.+.|. ++||.+.||
T Consensus       296 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~L~-~~gI~v~~g  362 (398)
T 2fyf_A          296 LDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDD---V---------DAGTVAKILR-ANGIVDTEP  362 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTT---S---------CHHHHHHHHH-HTTCBCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCC---C---------CHHHHHHHHH-HCCcEEecC
Confidence            7788999999999999999988 777653  5  4677999999742   1         3668888875 669999997


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                        |...     +.+++|++++.  ++++++..++.|.+++++
T Consensus       363 --~~~~-----~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          363 --YRKL-----GRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             --CTTT-----CSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             --cccC-----CCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence              3221     35799999994  889999999999887753

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=98.78  E-value=1.6e-08  Score=74.27  Aligned_cols=86  Identities=13%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +.|++++++.|+++++.+.+.|++++    +++..|+||+|+|+.++                . +++..++.++||.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~l~~~gv~v~  382 (412)
T 1ajs_A          320 TGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN----------------P-KQVEYLINQKHIYLL  382 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC----------------H-HHHHHHHHTTCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC----------------H-HHHHHHHHhCCEEec
Confidence            45889999999999999999999875    78888999999998553                2 344455678999988


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      |+               +|++++. +++++++++++|.+++++
T Consensus       383 ~~---------------~Ris~~~~~~~~i~~~~~~l~~~l~~  410 (412)
T 1ajs_A          383 PS---------------GRINMCGLTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             TT---------------SEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             CC---------------cEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence            62               5999995 888999999999988764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=98.77  E-value=7.5e-09  Score=75.46  Aligned_cols=84  Identities=10%  Similarity=0.181  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ++|++++++.|+++++.+.+.|++++    +++..|+||+|+|++++                ...+ ..++.++||.+.
T Consensus       308 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~~l~~~gv~v~  370 (396)
T 2q7w_A          308 EQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------------KEQV-LRLREEFGVYAV  370 (396)
T ss_dssp             HHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------------HHHH-HHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----------------HHHH-HHHHHhcCeeec
Confidence            46899999999999999999999875    78888999999998653                2233 344568899987


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWR  122 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~  122 (126)
                      ||               +|++++. +++++++++++|.+++
T Consensus       371 ~~---------------~Ris~~~~~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          371 AS---------------GRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             TT---------------CEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             CC---------------ceEEEeecCHHHHHHHHHHHHhcC
Confidence            72               5999996 8889999999998753

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=98.74  E-value=1e-07  Score=68.82  Aligned_cols=103  Identities=11%  Similarity=0.110  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc--ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIP-DG--GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p-~g--g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .++++++++.++++++.+.+.|++.|+++..| .|  +.++++.++..             +..++.+.| .+.||.+.|
T Consensus       255 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l-~~~gi~v~~  320 (384)
T 1eg5_A          255 VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-------------RGSTLQNLL-SGYGIYVST  320 (384)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-------------CHHHHHHHH-HHTTEECBC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC-------------CHHHHHHHH-hhCCeEEec
Confidence            35788999999999999999998767777555 33  24566666531             356788886 589999999


Q ss_pred             CCCcccCcc-c-------C----CCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           84 PSAFYSDEH-K-------H----LGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        84 g~~f~~~~~-~-------~----~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      |+.|+.... +       .    ...+++|++++  .+++++++++++|.++++
T Consensus       321 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  374 (384)
T 1eg5_A          321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (384)
T ss_dssp             ------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            998864200 0       0    01479999999  488999999999988876

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.70  E-value=1.4e-07  Score=67.44  Aligned_cols=88  Identities=8%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +.++.+.++++++.+.+.|.++ |+++..|.+++|+|++++.                 ++++.| .++||.+.||+ |+
T Consensus       262 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~l-~~~gi~v~~g~-~~  322 (356)
T 1v72_A          262 WLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS-----------------AMIDAL-LKAGFGFYHDR-WG  322 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH-----------------HHHHHH-HHTTCBCBCSS-SS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcCH-----------------HHHHHH-HhcCeEEeccc-cC
Confidence            4456777888999999999886 7887778899999987741                 466776 47899999987 53


Q ss_pred             cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           89 SDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                              ++++|++++.  +++++++++++|.+++++
T Consensus       323 --------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          323 --------PNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             --------TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             --------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence                    3689999873  789999999999887653

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.70  E-value=1.7e-07  Score=67.70  Aligned_cols=93  Identities=9%  Similarity=-0.014  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HhCCCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788           10 FYTISEELRPKREILADAL-DKAGMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l-~~~g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++.+++.++++++.+.+.| ++.|+++..|+     ++.++|+.++.               ..++.+.|. ++||.+.|
T Consensus       279 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~-~~gi~v~~  342 (385)
T 2bkw_A          279 LHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---------------PPDVIAFLK-SHGVVIAG  342 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---------------HHHHHHHHH-HTTEECBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC---------------HHHHHHHHH-HCCeEEeC
Confidence            6778899999999999999 87777765432     57788988753               446778764 78999999


Q ss_pred             CCCcccCcccCCCCCeEEEE-ee-----CChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYC-FF-----KKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~-~~-----~~~e~i~~~~~~l~~~~~~  124 (126)
                      |..+..      ..+++|++ ++     .+++++++++++|.+++++
T Consensus       343 g~~~~~------~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          343 GIHKDI------GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             CCCTTT------GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CCCccc------CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            987532      35799999 76     3788999999999987753

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=98.69  E-value=1.9e-07  Score=67.83  Aligned_cols=100  Identities=10%  Similarity=0.012  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +++.+++.++++++.+.+.|+++ ++++..|  .|+++.| .++..             +..++.+.| .++||.+.||+
T Consensus       298 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~l-~~~gi~v~~g~  362 (406)
T 1kmj_A          298 GLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGKH-------------HAYDVGSFL-DNYGIAVRTGH  362 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EETTC-------------CHHHHHHHH-HHTTEECEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EECCC-------------CHHHHHHHH-hhCCcEEEecc
Confidence            56688899999999999999887 7888777  7887776 56531             356777765 68899999998


Q ss_pred             CcccCcc-cCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEH-KHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~-~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .|..... ....++++|++++.  ++++++..++.|.++++
T Consensus       363 ~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~  403 (406)
T 1kmj_A          363 HCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  403 (406)
T ss_dssp             TTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence            7642100 00125899999996  78888999888887664

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=98.69  E-value=1.6e-07  Score=67.85  Aligned_cols=98  Identities=5%  Similarity=-0.027  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      .++.+++.++++++.+.+.|.++++.+..+..+.+++.-.+..   .         +..++.+.|.++.||.+.||.  +
T Consensus       275 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~l~~~~gi~v~~g~--~  340 (376)
T 3f0h_A          275 GADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTT---A---------NAYDIFLKLKDEYGIWICPNG--G  340 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESS---S---------CHHHHHHHHHHHSSEECEECC--G
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCC---C---------CHHHHHHHHHHhCCEEEecCc--c
Confidence            4778889999999999999987776655444333333222221   1         366888887644599999983  2


Q ss_pred             cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788           89 SDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN  125 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~  125 (126)
                      ..     ..+++|++++.  +++++++++++|.++++++
T Consensus       341 ~~-----~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~  374 (376)
T 3f0h_A          341 EM-----KDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN  374 (376)
T ss_dssp             GG-----TTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred             cc-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            21     36799999973  8899999999999988765

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.67  E-value=1.7e-07  Score=69.78  Aligned_cols=102  Identities=17%  Similarity=0.261  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC-CCCcccCcc----
Q psy788           18 RPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP-PSAFYSDEH----   92 (126)
Q Consensus        18 ~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p-g~~f~~~~~----   92 (126)
                      .++++.+.+.|.+.++++..|.+|+++|+++......+.    ....+..+++..|+.++||.+.| |+.|.....    
T Consensus       329 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~  404 (467)
T 1ax4_A          329 IGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIP----GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGE  404 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSC----GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccc----cCCCCHHHHHHHHHHhcCceeeecCcccccccccccc
Confidence            366778888887767888789999999999432100000    00013567888875789999999 765321100    


Q ss_pred             -cCCCCCeEEEEee---CChhHHHHHHHHHHHhhh
Q psy788           93 -KHLGENLIRYCFF---KKDETLREASSILQTWRN  123 (126)
Q Consensus        93 -~~~~~~~~Rl~~~---~~~e~i~~~~~~l~~~~~  123 (126)
                       .....+++||+++   .+.+++++++++|.++++
T Consensus       405 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  439 (467)
T 1ax4_A          405 QKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE  439 (467)
T ss_dssp             BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred             ccccccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence             0012479999998   378899999999987765

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=98.67  E-value=2.4e-07  Score=66.51  Aligned_cols=94  Identities=11%  Similarity=0.071  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-C-ccc-CC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            9 YFYTISEELRPKREILADALDKAG-M-VPV-IP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g-~-~~~-~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      +++++++.++++++.+.+.|++++ + .+. .|  .+++++|++++..   .         +..++.+.| .++||.+.|
T Consensus       259 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~l-~~~gi~~~~  325 (360)
T 1w23_A          259 GAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE---E---------LNQQFLAKA-KEQGFVGLN  325 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH---H---------HHHHHHHHH-HHTTEESCB
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC---c---------cHHHHHHHH-HHCCeeeec
Confidence            678899999999999999998874 4 432 23  4678999998752   1         355787875 588999998


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      |..|         ++++|++++.  ++++++..++.|.+++++
T Consensus       326 ~~~~---------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          326 GHRS---------VGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             CCTT---------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCC---------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            7643         3689999984  788899999999887754

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=98.65  E-value=2.9e-07  Score=67.20  Aligned_cols=93  Identities=5%  Similarity=-0.050  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC---cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIPD---GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~---gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      |++++++.++++++.+.+.|+++ ++++..|.   ++ ++++.++..             +..++.+.| .++||.+.||
T Consensus       300 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~L-~~~gi~v~~g  364 (406)
T 3cai_A          300 SMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV-------------PADRVVQRL-ADNGILAIAN  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB-------------CHHHHHHHH-HHTTEECEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc-------------CHHHHHHHH-HHCCcEEecC
Confidence            78899999999999999999887 67766653   56 688888641             366788886 4789999999


Q ss_pred             C------CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           85 S------AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        85 ~------~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                      +      .|+..    ...+++|++++.  ++++++..++.|.+
T Consensus       365 ~~~~~~~~~g~~----~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          365 TGSRVLDVLGVN----DVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             CSCHHHHHHTTT----TTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             ChHHHHHHcCCC----CCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence            8      44432    135799999996  78899999988865

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.64  E-value=4e-08  Score=71.62  Aligned_cols=83  Identities=14%  Similarity=0.069  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ++|++++++.|+++++.+.+.|++++    +.+..|+||+|+|++++                ...+. .++.++||.+.
T Consensus       305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------------~~~~~-~~l~~~gi~v~  367 (394)
T 2ay1_A          305 MAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------------PEQVK-RIKEEFGIYMV  367 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------------HHHHH-HHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----------------HHHHH-HHHHhCCEEec
Confidence            46899999999999999999998764    77788999999998664                22343 44568899987


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                      ||               +|++++. +++++++++++|.++
T Consensus       368 ~~---------------~Ris~~~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          368 GD---------------SRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             TT---------------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CC---------------CeEEeecCCHhhHHHHHHHHHHc
Confidence            63               4999986 888899999999765

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=98.64  E-value=2.1e-07  Score=67.35  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCccc---CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPV---IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~---~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .|++.+++.++++++.+.+.|+++ |+++.   .+.|+|+.| +++..   .         +..++++.| .++||.+.|
T Consensus       293 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~~~---~---------~~~~~~~~l-~~~gi~v~~  358 (390)
T 1elu_A          293 GTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVDSP---L---------GHRAIVQKL-EEQRIYLRT  358 (390)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EECSS---S---------CHHHHHHHH-HHTTEECEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEE-EcCCC---C---------CHHHHHHHH-HHCCEEEEe
Confidence            368889999999999999999987 77776   346887666 88632   1         366788887 588999999


Q ss_pred             CCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTW  121 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~  121 (126)
                      |+    .      ++++|++++  .+++++++++++|.++
T Consensus       359 ~~----~------~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          359 IA----D------PDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             ET----T------TTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             cC----C------CCeEEEecccCCCHHHHHHHHHHHHhh
Confidence            75    1      478999986  4888999999988653

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=98.61  E-value=5.9e-07  Score=64.27  Aligned_cols=91  Identities=13%  Similarity=0.013  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCC----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVIP----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.+++.++++++.+.+.|+++ |+++..|    .+++++|+.++.              +..++.+.|. ++||.+.||
T Consensus       264 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~~~~g  328 (362)
T 3ffr_A          264 ADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--------------LPGEINKILE-PFDMAVGAG  328 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--------------CHHHHHHHHG-GGTEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--------------CHHHHHHHHH-HCCeEEecC
Confidence            6788999999999999999988 7776552    356788888874              1567888875 669999998


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      ..+.       ..+++|++++.  ++++++..++.|.+++
T Consensus       329 ~~~~-------~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          329 YGSK-------KETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             SGGG-------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             cccc-------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            5442       36899999985  7788899888887754

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.59  E-value=9e-07  Score=63.90  Aligned_cols=91  Identities=14%  Similarity=0.061  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..++..+++.++++++.+.+.|+++++++..|..+.++|+..+.               ..++.+.|. ++||.+.||+.
T Consensus       304 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~-~~gi~v~~~~~  367 (397)
T 3f9t_A          304 REGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------------YKEVCKKLR-DRGIYVSVCNC  367 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------------HHHHHHHHH-HTTCBCEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------------HHHHHHHHH-hCCeEEeccCC
Confidence            35677888899999999999999888775444455567776652               456778865 67999998642


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                                ++++|++++.  +++++++++++|.++++
T Consensus       368 ----------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          368 ----------VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             ----------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             ----------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence                      4799999994  88999999999988764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.57  E-value=2.1e-07  Score=66.61  Aligned_cols=91  Identities=12%  Similarity=0.164  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC-CeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV-KLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gV~v~pg~~   86 (126)
                      ..++++++.++++++.+.+.|+..++++..|.|++|+|++++                 .++++.|. ++ ||.+     
T Consensus       264 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~-~~~gi~v-----  320 (359)
T 1svv_A          264 NLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILE-----------------NTMIAELN-NDFDMYT-----  320 (359)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEE-----------------HHHHHHHT-TTEECEE-----
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccCCeEEccCCccceEEEEcC-----------------HHHHHHHH-HhcCEEE-----
Confidence            356789999999999999999433788888899999998664                 15667765 55 9998     


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      |+...   ..++++|++++.  +++++++++++|.++++.
T Consensus       321 ~~~~~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  357 (359)
T 1svv_A          321 VEPLK---DGTCIMRLCTSWATEEKECHRFVEVLKRLVAS  357 (359)
T ss_dssp             EEEET---TTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred             Eeccc---CCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence            33211   146799998763  889999999999987753

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=98.56  E-value=1.2e-07  Score=70.68  Aligned_cols=106  Identities=14%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788           13 ISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH   92 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~   92 (126)
                      ..+.+.++++.+.+.|.+.++++. |.+|+++|++++......+   .... +...++..|+.++||.+.|++.|+....
T Consensus       326 ~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~L~~~~gv~~~~~~~~~~~~~  400 (467)
T 2oqx_A          326 WLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIP---ADQF-PAQALACELYKVAGIRAVEIGSFLLGRD  400 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSC---GGGC-HHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCC---cccc-cHHHHHHHHHHhcCceeccccccccccc
Confidence            344566788899999988788877 8899999999853000011   0000 1345678875788999999665422100


Q ss_pred             c------CCCCCeEEEEee---CChhHHHHHHHHHHHhhh
Q psy788           93 K------HLGENLIRYCFF---KKDETLREASSILQTWRN  123 (126)
Q Consensus        93 ~------~~~~~~~Rl~~~---~~~e~i~~~~~~l~~~~~  123 (126)
                      +      ....+++|++++   .+++++++++++|.++++
T Consensus       401 ~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~  440 (467)
T 2oqx_A          401 PKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_dssp             TTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            0      012479999998   578899999999998775

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.55  E-value=7.6e-07  Score=65.02  Aligned_cols=100  Identities=11%  Similarity=-0.009  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC------cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIPD------GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~------gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +++++++.++++++.+.+.|+++ |+++..|.      |+++.| .++..             +..++.+.| .++||.+
T Consensus       302 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~l-~~~gi~v  366 (420)
T 1t3i_A          302 GMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF-NVAGL-------------HASDVATMV-DQDGIAI  366 (420)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE-EETTB-------------CHHHHHHHH-HTTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEE-EECCC-------------CHHHHHHHH-HHCCeEE
Confidence            46788999999999999999987 78876664      676655 57631             255777765 6889999


Q ss_pred             eCCCCcccCcccCCC-CCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           82 IPPSAFYSDEHKHLG-ENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~-~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .||..|........+ ++++|++++.  ++++++..++.|.++++
T Consensus       367 ~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~  411 (420)
T 1t3i_A          367 RSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR  411 (420)
T ss_dssp             BCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            999766431000012 6799999995  78889998888887765

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=98.53  E-value=8.5e-07  Score=63.92  Aligned_cols=94  Identities=12%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-C-cccC---CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            9 YFYTISEELRPKREILADALDKAG-M-VPVI---PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g-~-~~~~---p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      +++.+++.++++++.+.+.|++++ + ++..   +.++.++|+.++..   .         ++.++++.| .++||.+.|
T Consensus       260 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~L-~~~gi~~~~  326 (362)
T 2c0r_A          260 GLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE---E---------LEKEFVKAS-EQEGFVGLK  326 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH---H---------HHHHHHHHH-HHTTEESCB
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCc---c---------hHHHHHHHH-HHCCCeecc
Confidence            688999999999999999999886 6 6532   23456788888742   1         366788885 588999988


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      |..|         .+++|+|++.  +.++++..++.|.+++++
T Consensus       327 g~~~---------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~  360 (362)
T 2c0r_A          327 GHRS---------VGGLRASIYNAVPYESCEALVQFMEHFKRS  360 (362)
T ss_dssp             CCTT---------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCC---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            8655         2469999985  788899999999887764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=98.50  E-value=5.2e-07  Score=67.06  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC-CCCcccCc-----cc
Q psy788           20 KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP-PSAFYSDE-----HK   93 (126)
Q Consensus        20 r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p-g~~f~~~~-----~~   93 (126)
                      ..+.+.+.|.+.|+++..|.+|+|+|+++.......+   ..+. ....++..|+.++||.+.| |+.|....     ..
T Consensus       321 ~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~  396 (456)
T 2ez2_A          321 QVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLT---QDEF-PAQSLAASIYVETGVRSMERGIISAGRNNVTGEHH  396 (456)
T ss_dssp             HHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSC---GGGC-HHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBC
T ss_pred             HHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCC---hhhc-cHHHHHHHHHHhcCeeeecccccccccCccccccc
Confidence            3345666666657888789999999999842100011   0000 0223467765688999877 55442110     00


Q ss_pred             CCCCCeEEEEee---CChhHHHHHHHHHHHhhh
Q psy788           94 HLGENLIRYCFF---KKDETLREASSILQTWRN  123 (126)
Q Consensus        94 ~~~~~~~Rl~~~---~~~e~i~~~~~~l~~~~~  123 (126)
                      ..+.+++|++++   .+++++++++++|.++++
T Consensus       397 ~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~  429 (456)
T 2ez2_A          397 RPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ  429 (456)
T ss_dssp             CCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            012478999999   478999999999988775

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=98.49  E-value=1.2e-06  Score=64.03  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++.+++.++++++.+.+.|.+.|+++..| .+++++|+.++...  .         +...+.+. +.++||.+.++..
T Consensus       286 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~-l~~~gi~v~~~~~  353 (425)
T 3ecd_A          286 DDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKG--L---------KGAQVEQA-LERAGITCNKNGI  353 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---------CHHHHHHH-HHHTTEECEECCC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCCceEEEEEeCCCC--C---------CHHHHHHH-HHHcCCEeccccc
Confidence            5678899999999999999998888877654 57889999986422  1         24456665 4688999995443


Q ss_pred             cccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~~  124 (126)
                      ++.... ....+++|+++..      .++.+++.++.|.+++++
T Consensus       354 p~~~~~-~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~  396 (425)
T 3ecd_A          354 PFDPEK-PTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEA  396 (425)
T ss_dssp             TTCSSC-TTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC-CCCccceeccchhheeccCCHHHHHHHHHHHHHHHhc
Confidence            321100 0135789998653      267888888888777653

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=98.49  E-value=1.2e-06  Score=66.23  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe----
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPD-GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI----   82 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~-gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~----   82 (126)
                      .+++.+++++.++++.+.+.|.+.|+++..|. +++++|++++..+  +         +..++.+.| .+.||.+.    
T Consensus       321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g--~---------~~~~~~~~L-~~~gI~v~~~~~  388 (483)
T 1rv3_A          321 PEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKG--T---------DGGRAEKVL-EACSIACNKNTC  388 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT--C---------CHHHHHHHH-HHTTEECEEECC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCC--C---------CHHHHHHHH-HhCCcEEecCCC
Confidence            46788999999999999999988888876653 4578999986422  1         355666664 68999999    


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC--C----hhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK--K----DETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~--~----~e~i~~~~~~l~~~~~  123 (126)
                      ||+...      .+++++||+++.  +    ++++++.++.|.++++
T Consensus       389 pg~~~~------~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~  429 (483)
T 1rv3_A          389 PGDKSA------LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  429 (483)
T ss_dssp             SSCSCT------TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcC------CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            887321      135799999985  4    7889999998887765

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=98.49  E-value=1.6e-07  Score=68.33  Aligned_cols=102  Identities=11%  Similarity=0.039  Sum_probs=60.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .++++++++.++++++.+.+.|+ . ++.+..|++   +.++++.++..             +..++++.| . .||.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~L-~-~gi~v~  342 (400)
T 3vax_A          279 EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDV-------------DAEAFLVTL-K-DLVAVA  342 (400)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTC-------------CHHHHHHHH-H-HHHHHT
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCC-------------CHHHHHHHH-h-cCcEEE
Confidence            34678999999999999999998 6 788776665   34666666631             366788886 4 899999


Q ss_pred             CCCCcccCcc------------cCCCCCeEEEEe-eC--ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEH------------KHLGENLIRYCF-FK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~------------~~~~~~~~Rl~~-~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|.....            ....++++||++ +.  ++++++..++.|.+++++
T Consensus       343 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          343 TGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             TTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred             ecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            9987754200            000148999999 73  678899999999887653

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=98.48  E-value=2.1e-06  Score=62.77  Aligned_cols=104  Identities=10%  Similarity=0.023  Sum_probs=72.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +.+++.+++.+.++++.+.+.|.+.|+.+..+ .++.++|+.++...  .         +...+.+. +.++||.+.|+.
T Consensus       284 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~-l~~~gi~v~~~~  351 (420)
T 3gbx_A          284 EPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKN--L---------TGKEADAA-LGRANITVNKNS  351 (420)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---------CHHHHHHH-HHHTTEECEEEC
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCC--C---------CHHHHHHH-HHHCCcEecccc
Confidence            35778899999999999999998878777543 67889999886422  1         24456565 468899999943


Q ss_pred             CcccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~  123 (126)
                      .++.... ..++..+|++++.      .++.++..++.|.++++
T Consensus       352 ~~~~~~~-~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~  394 (420)
T 3gbx_A          352 VPNDPKS-PFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD  394 (420)
T ss_dssp             CTTCSSC-TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCccc-cCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence            3322100 0124569999873      35778888888877765

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=98.45  E-value=1.9e-06  Score=64.84  Aligned_cols=98  Identities=12%  Similarity=0.024  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceE-EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYF-MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .++++++++.+.++++++.+.|.+.|+++..+.+.++ +|++++..   .         +..++++.|. +.||.+ |+.
T Consensus       339 ~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~L~-~~Gi~~-~~~  404 (474)
T 1wyu_B          339 LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEG---F---------RALDLAKGLL-ELGFHP-PTV  404 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTT---C---------CHHHHHHHHH-HTTCCC-CEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCC---C---------CHHHHHHHHH-HCCccc-ccc
Confidence            4577888999999999999999887777633333332 67777321   1         3668888876 669984 776


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .|...     ..+++|++++.  +.+++++++++|.++++
T Consensus       405 ~~~~~-----~~~~lRis~~~~~t~e~id~~~~~L~~~~~  439 (474)
T 1wyu_B          405 YFPLI-----VKEALMVEPTETEAKETLEAFAEAMGALLK  439 (474)
T ss_dssp             SCSTT-----STTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred             ccccc-----cCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence            66421     35789999996  78999999999988765

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=98.42  E-value=1.7e-06  Score=63.93  Aligned_cols=108  Identities=9%  Similarity=-0.131  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+++++++..+..++.+.+.+.++ ++....|.|. |+|+++.....  ..+ ........++++.|+ ++||.+.|+..
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~-~~Gv~v~~~~~  391 (430)
T 3i4j_A          317 DLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGL-LLGVVLGDLAT--GQA-FETPGIASRIGAAAL-KRGLITYPGSG  391 (430)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT-EEEEEEC---------------CHHHHHHHHH-HTTEECC----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE-EEEEEeccccc--cCC-CccHHHHHHHHHHHH-hCCCEEEeccc
Confidence            455556665555556665555454 3444555554 77777753100  000 000001356888865 88999999854


Q ss_pred             cccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                      +...    .+.+++|++++  .+++++++++++|.++++.
T Consensus       392 ~~~~----~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          392 AEPN----GRGDHLLLGPPLSITAAEVDGLLALLAGALED  427 (430)
T ss_dssp             -----------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            4332    24679999988  4889999999999988764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.32  E-value=4.8e-06  Score=61.00  Aligned_cols=101  Identities=16%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..+++++++.++++++.+.+.|+++ ++.+..+.+   +.++++.++..             +..++.+.|. +  |.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~l~-~--i~v~  342 (423)
T 3lvm_A          279 KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------------EGESLIMALK-D--LAVS  342 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTS-------------CHHHHHHHTT-T--EECB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCC-------------CHHHHHHHHh-h--heec
Confidence            3457889999999999999999887 777766654   33555555431             3667777753 4  9999


Q ss_pred             CCCCcccCccc------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHK------------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ||..|......            ....+++|++++.  ++++++..++.|.++++
T Consensus       343 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~  397 (423)
T 3lvm_A          343 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG  397 (423)
T ss_dssp             CCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            99877542100            0014899999994  77889999999988765

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=98.30  E-value=2.8e-06  Score=62.35  Aligned_cols=96  Identities=13%  Similarity=0.066  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHhC----C-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           13 ISEELRPKREILADALDKA----G-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~----g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+.++++++.+.+.|++.    . +....|. |+|+|++++.... ...+   +..+..+++..|. ++||.+.||+.|
T Consensus       320 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~---~~~~~~~l~~~l~-~~gi~v~~~~~~  393 (426)
T 1sff_A          320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGD-HNKP---DAKLTAEIVARAR-DKGLILLSCGPY  393 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGC-TTSB---CHHHHHHHHHHHH-HTTEECEEESTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCcc-ccCC---ChHHHHHHHHHHH-HCCcEEecCCCC
Confidence            4455566666666666543    2 2223455 6799999953100 0000   0013567888875 779999998753


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                               ++++|++++  .+++++++++++|.++++
T Consensus       394 ---------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  422 (426)
T 1sff_A          394 ---------YNVLRILVPLTIEDAQIRQGLEIISQCFD  422 (426)
T ss_dssp             ---------SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence                     368999986  388999999999988765

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=98.28  E-value=3e-06  Score=60.51  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           12 TISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      .+++.+ ++++.+.+.|+++|+.+ ..|.+|.|+|++++...  .         +..++++.|. ++||.+.|+   +  
T Consensus       254 ~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l~-~~gi~v~~~---~--  315 (347)
T 1jg8_A          254 RLKEDH-ENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK--V---------NAHGFIEALR-NSGVLANAV---S--  315 (347)
T ss_dssp             THHHHH-HHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS--S---------CHHHHHHHHH-HHTEECEEE---E--
T ss_pred             HHHHHH-HHHHHHHHHHHhcCceeccCCCcceEEEEEccccc--C---------CHHHHHHHHH-HCCCEEecC---C--
Confidence            344444 46688888887766654 23444557999987411  1         3668888875 789999874   1  


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                            .+++|++++.  +++++++++++|.+++++
T Consensus       316 ------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          316 ------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             ------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence                  3589999964  889999999999987653

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.24  E-value=4.8e-06  Score=60.09  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788           12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE   91 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~   91 (126)
                      .+++.++++++.+.+.|++++.... +.+|+|+|++++.              +..++++.|. ++||.+.|+       
T Consensus       290 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~--------------~~~~~~~~l~-~~gi~~~~~-------  346 (375)
T 2eh6_A          290 KLLPHVREVGNYFKEKLKELGKGKV-KGRGLMLGLELER--------------ECKDYVLKAL-EKGLLINCT-------  346 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSEE-EEETTEEEEECSS--------------CCHHHHHHHH-HTTEECEEE-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEEEEEEEcC--------------cHHHHHHHHH-HCCCEEecC-------
Confidence            6778888999999999988754333 4467789998864              2456778865 789999885       


Q ss_pred             ccCCCCCeEEEEee--CChhHHHHHHHHHHHhh
Q psy788           92 HKHLGENLIRYCFF--KKDETLREASSILQTWR  122 (126)
Q Consensus        92 ~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~  122 (126)
                          +++++|++++  .+++++++++++|.+++
T Consensus       347 ----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          347 ----AGKVLRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             ----TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             ----CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence                1468999987  38899999999998753

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=98.23  E-value=9.3e-06  Score=60.40  Aligned_cols=106  Identities=8%  Similarity=-0.076  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +++++++..+..++.+.+.+.+++ +....+.|. |+++++........ +  .......+++..|+ +.||.+.|+..|
T Consensus       343 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~-~--~~~~~~~~~~~~l~-~~Gv~~~~~~~~  417 (452)
T 3n5m_A          343 LIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGL-LVGIELVNDKETKE-P--IDNDKIASVVNACK-EKGLIIGRNGMT  417 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSS-CEEEEEEEETTTTE-E--CCHHHHHHHHHHHH-HTTEECEECTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCCcccC-C--CCHHHHHHHHHHHH-HCCcEEeecCcc
Confidence            444444444444444444444443 333445544 66777743110000 0  00001246777765 789999999887


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...     .++++||+.+  .+++++++++++|.+++++
T Consensus       418 ~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          418 TAG-----YNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             STT-----CCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             cCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            532     4689999754  5899999999999988763

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=98.22  E-value=4.8e-06  Score=61.45  Aligned_cols=99  Identities=11%  Similarity=-0.026  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHhC----C-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           13 ISEELRPKREILADALDKA----G-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~----g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+.++++++.+.+.|++.    + +....+. |.|+|++++.... ...+   +..+..+++..|+ ++||.+.||..|
T Consensus       326 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-g~~~~i~~~~~~~-~~~~---~~~~~~~~~~~l~-~~Gv~v~~~~~~  399 (433)
T 1zod_A          326 LVARANVMGDRLRRGLLDLMERFDCIGDVRGR-GLLLGVEIVKDRR-TKEP---ADGLGAKITRECM-NLGLSMNIVQLP  399 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETT-TTEE---CTTHHHHHHHHHH-HTTEECCEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCcc-ccCC---ChHHHHHHHHHHH-HCCCeEeccCCC
Confidence            4566666777777777653    2 2223344 5677898864100 0000   0012567888875 889999999876


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                      +       .++++|++++  .+++++++++++|.+++++
T Consensus       400 ~-------~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          400 G-------MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             T-------SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             C-------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence            4       2579999765  4899999999999987753

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.22  E-value=5.7e-06  Score=60.23  Aligned_cols=87  Identities=10%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           12 TISEELRPKREILADALDKAGMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      .+++.++++++.+.+.|++.+.++  ..+..|.|+|++++.              +..++++.|..++||.+.|+     
T Consensus       305 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~l~~~l~~~~gi~v~~~-----  365 (395)
T 1vef_A          305 RLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKE--------------KAAPYIARLEKEHRVLALQA-----  365 (395)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESS--------------CSHHHHHHHHHHHCEECEES-----
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcC--------------hHHHHHHHHHHHCCeEEecC-----
Confidence            357788888899999998764332  234567799998874              14567888653789999985     


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                            +++++|++++  .+++++++++++|.++++
T Consensus       366 ------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          366 ------GPTVIRFLPPLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             ------STTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             ------CCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence                  1478999886  388999999999988753

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=98.21  E-value=7.2e-07  Score=64.21  Aligned_cols=93  Identities=13%  Similarity=0.067  Sum_probs=69.4

Q ss_pred             HHHHHH--HHHHHHHHHHHHhCCCcccCCC--cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEEL--RPKREILADALDKAGMVPVIPD--GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~--~~r~~~l~~~l~~~g~~~~~p~--gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+++.+  +++++.+.+.|.+.++++..|.  .|.++|++++ .              ..++.+.|. +.||.+.| ..|
T Consensus       267 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~l~-~~gi~~~~-~~~  329 (371)
T 2e7j_A          267 RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE-V--------------LYEISKKAK-GGRFFLYR-ELK  329 (371)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH-H--------------HHHHHHHSS-SGGGHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC-C--------------HHHHHHHHH-HCCEEEEe-ccc
Confidence            456677  8888999999987787776663  3558899876 1              456778765 88999999 555


Q ss_pred             ccC--cccCCCCCeEE-EEee---CChhHHHHHHHHHHHhhhc
Q psy788           88 YSD--EHKHLGENLIR-YCFF---KKDETLREASSILQTWRNK  124 (126)
Q Consensus        88 ~~~--~~~~~~~~~~R-l~~~---~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...  +   ..++++| ++++   .++++++.++++|.+++++
T Consensus       330 ~~~~~g---~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          330 SRKIHG---IKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             HTTEEC---SCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccC---CCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence            330  1   1267999 9999   5789999999999988764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=98.21  E-value=3.2e-06  Score=61.71  Aligned_cols=76  Identities=11%  Similarity=-0.038  Sum_probs=45.6

Q ss_pred             CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC-Chh
Q psy788           32 GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK-KDE  109 (126)
Q Consensus        32 g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e  109 (126)
                      |+.+ ..|.|++|.|.+++... ..        .++.+++..++.++||.+.||..|..      +++++||+++. +.+
T Consensus       289 g~~~~~~~~g~~~~~~~~~~~~-~~--------~~~~~~~~~ll~~~gV~v~~g~~~~~------~~~~lRi~~~~~~~~  353 (374)
T 2aeu_A          289 NIVYERTPTGFVIKRVYKDDTI-NI--------KKLIEIGFNLLKNYGIITITVAGMPG------ASKSLRIDLTSRDAE  353 (374)
T ss_dssp             EEEEEECSSEEEEEEEESSHHH-HH--------HHHHHHHHHHHHHHCEECSTTSSSCS------SCCSEEEETTSGGGG
T ss_pred             CcceeeCCceEEEEeecccccc-cc--------cchHHHHHHHHHhCCEEEecCCCCCC------CCCeEEEEcCCchHH
Confidence            3454 45777777776554210 00        02345777777788999999988732      35789999986 322


Q ss_pred             H--HHHHHHHHHHhh
Q psy788          110 T--LREASSILQTWR  122 (126)
Q Consensus       110 ~--i~~~~~~l~~~~  122 (126)
                      .  ++..++.|.+++
T Consensus       354 ~~~l~~l~~~l~~~l  368 (374)
T 2aeu_A          354 RIDDNYIIKAIVESI  368 (374)
T ss_dssp             GSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            2  444444444443

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=98.21  E-value=1.5e-05  Score=59.21  Aligned_cols=93  Identities=15%  Similarity=0.144  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE--eCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG--IPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v--~pg   84 (126)
                      ..++++++.+.++++++.+.|.++ |+++..|. .+|.++.++..   .         +..++++.|. ++||.+  .|+
T Consensus       340 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~---~---------~~~~~~~~L~-~~gi~v~~~~~  405 (438)
T 1wyu_A          340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALP---K---------DPEAVRRALA-ERGFHGATPVP  405 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS---S---------CHHHHHHHHH-HTTCCCCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCC---C---------CHHHHHHHHH-HCCceeccccc
Confidence            346778889999999999999988 88876654 45544444321   1         3668888876 679998  677


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      ..|.        ++++|++++.  +.++++..++.|.+++
T Consensus       406 ~~~~--------~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          406 REYG--------ENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             TTSC--------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             cccC--------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            6553        4789999993  7888999999988764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=98.20  E-value=1.7e-05  Score=57.93  Aligned_cols=89  Identities=10%  Similarity=0.178  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788            8 CYFYTISEELRPKREILADALDKA----GMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV   79 (126)
                      .+++++++.++++++.+.+.|.+.    |+++..|.    .+.++|++++.               ..++.+.|. ++||
T Consensus       301 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~l~-~~gi  364 (416)
T 1qz9_A          301 TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------------GYAVIQALI-DRGV  364 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------------HHHHHHHHH-TTTE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---------------HHHHHHHHH-hCCc
Confidence            467889999999999999999886    77776664    25578888752               446778765 7799


Q ss_pred             eEeCCCCcccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           80 QGIPPSAFYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      .+.+    .       ..+++|++++.   ++++++.++++|.++++
T Consensus       365 ~~~~----~-------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~  400 (416)
T 1qz9_A          365 IGDY----R-------EPRIMRFGFTPLYTTFTEVWDAVQILGEILD  400 (416)
T ss_dssp             ECEE----E-------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             Eecc----C-------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHh
Confidence            8632    1       35799999972   88999999999988775

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=98.16  E-value=1.9e-05  Score=57.53  Aligned_cols=93  Identities=13%  Similarity=0.022  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +.+++++++..+..++.+.+.+.+++ +.... ..|.|+|++++...            +..++++.|. +.||.+.|+.
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~------------~~~~~~~~l~-~~Gi~v~~~~  364 (395)
T 3nx3_A          299 EKILENVNKLTPYLEQSLDELINEFDFCKKRK-GLGFMQGLSLDKSV------------KVAKVIQKCQ-ENALLLISCG  364 (395)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEECTTS------------CHHHHHHHHH-HTTEECEEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-eEEEEEEEEeCCcc------------hHHHHHHHHH-HCCCEEecCC
Confidence            34555666555555565655555443 22233 34668899887521            3567888864 7899998852


Q ss_pred             CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                                 ++++|++++  .+++++++++++|.+++++
T Consensus       365 -----------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          365 -----------ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             -----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                       478999865  4889999999999988764

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=98.15  E-value=6.3e-06  Score=60.10  Aligned_cols=88  Identities=17%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhC--CCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA--GMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~--g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ++++.++++++.+.+.|++.  ++++  ..+..|.|+|++++...            +..++++.|. ++||.+.||.  
T Consensus       302 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------~~~~l~~~l~-~~gi~v~~~~--  366 (397)
T 2ord_A          302 GFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV------------SNREVATKCF-ENKLLVVPAG--  366 (397)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS------------CHHHHHHHHH-HTTEECEEET--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChH------------HHHHHHHHHH-HCCCEEccCC--
Confidence            57888999999999999775  3443  12334568888887421            3667888875 6899999861  


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                               ++++|++++  .+++++++++++|.++++
T Consensus       367 ---------~~~iRis~~~~~~~e~i~~~~~~l~~~l~  395 (397)
T 2ord_A          367 ---------NNTIRFLPPLTVEYGEIDLAVETLKKVLQ  395 (397)
T ss_dssp             ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence                     368999965  488999999999998775

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=98.15  E-value=1.1e-05  Score=59.60  Aligned_cols=100  Identities=14%  Similarity=0.059  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      ++++++..+..++.+.+.+.+++.....+..|.|+|+++...... .   ..+..+..++++.|+ ++||.+.|+..   
T Consensus       322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~-~~Gv~v~~~~~---  393 (439)
T 3dxv_A          322 PAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQS-R---EPARAETAKLIYRAY-QLGLVVYYVGM---  393 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-T---EECHHHHHHHHHHHH-HHTEECEEEST---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc-c---CCCHHHHHHHHHHHH-HCCcEEeecCC---
Confidence            334444333334444443333332222334456788877321000 0   000013557888875 67999999742   


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                            ..+++|++++  .+++++++++++|.++++
T Consensus       394 ------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  423 (439)
T 3dxv_A          394 ------NGNVLEFTPPLTITETDIHKALDLLDRAFS  423 (439)
T ss_dssp             ------TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                  2478999765  488999999999998875

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=98.13  E-value=1.7e-05  Score=59.24  Aligned_cols=101  Identities=9%  Similarity=0.055  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +++++++..+..++.+.+.+.+++.....+..|.|+|+++.....  ..+   +.....++++.|+ ++||.+.|+..| 
T Consensus       348 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~---~~~~~~~~~~~l~-~~Gv~v~~~~~~-  420 (451)
T 3oks_A          348 LVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGT--TEP---DADLTKALCAGAH-AAGVIVLSCGTY-  420 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTS--CCB---CHHHHHHHHHHHH-HTTEECEEECTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCcc--CCC---CHHHHHHHHHHHH-hCCcEEecCCCC-
Confidence            344444444444444444444443222223346688888743100  000   0012456778764 889999997544 


Q ss_pred             cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                              .+++|++++  .+++++++++++|.+++++
T Consensus       421 --------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          421 --------GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             --------SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             --------CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence                    257888766  3889999999999988763

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=98.12  E-value=3.1e-05  Score=57.70  Aligned_cols=99  Identities=16%  Similarity=0.052  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-----CCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            8 CYFYTISEELRPKREILADALDKA-----GMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-----g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      .+++.+++.+.++++.+.+.|.+.     |+++.. +.++.++|+++...+  +         +...+ ..++.+.||.+
T Consensus       298 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~-~~~l~~~GI~v  365 (447)
T 3h7f_A          298 PEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP--L---------DGQAA-EDLLHEVGITV  365 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS--C---------CHHHH-HHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC--C---------CHHHH-HHHHHHCCeEE
Confidence            367888999999999999999887     777643 567889999986432  1         23344 44566889999


Q ss_pred             e----CCCCcccCcccCCCCCeEEEEee------CChhHHHHHHHHHHHhhh
Q psy788           82 I----PPSAFYSDEHKHLGENLIRYCFF------KKDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~----pg~~f~~~~~~~~~~~~~Rl~~~------~~~e~i~~~~~~l~~~~~  123 (126)
                      .    |+..+...     .++++|++..      .++++++++++.|.++++
T Consensus       366 ~~~~i~~~~~~p~-----~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~  412 (447)
T 3h7f_A          366 NRNAVPNDPRPPM-----VTSGLRIGTPALATRGFGDTEFTEVADIIATALA  412 (447)
T ss_dssp             BC------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ecccCCCCCCCCC-----CCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence            8    65333221     3578999875      256889999999988765

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.11  E-value=9.2e-06  Score=59.05  Aligned_cols=86  Identities=16%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC---CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           11 YTISEELRPKREILADALDKAG---MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g---~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +++++.++++++.+.+.|.+++   +....+.|+| +++.++.              +..++++.|. ++||.+.||+  
T Consensus       302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~-~~~~~~~--------------~~~~l~~~l~-~~gi~v~~~~--  363 (392)
T 3ruy_A          302 EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLF-IGIELNE--------------PARPYCEQLK-AAGLLCKETH--  363 (392)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTE-EEEEESS--------------CSHHHHHHHH-TTTEECCCBT--
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeE-EEEEEcc--------------hHHHHHHHHH-HCCcEEecCC--
Confidence            4678889999999999998764   3445566665 4455764              1557888865 8899998853  


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                               .+++|++++  .+++++++++++|.++++
T Consensus       364 ---------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  392 (392)
T 3ruy_A          364 ---------ENVIRIAPPLVISEEDLEWAFQKIKAVLS  392 (392)
T ss_dssp             ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             ---------CCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence                     468999955  488999999999988763

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=98.11  E-value=1.6e-05  Score=59.37  Aligned_cols=101  Identities=12%  Similarity=0.003  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+++++++..+..++.+.+.+.+++.....+..|+|+|+++.....  ..+   +.....+++..|+ ++||.+.|+..|
T Consensus       345 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~---~~~~~~~~~~~l~-~~Gv~v~~~~~~  418 (453)
T 4ffc_A          345 DLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGT--LEP---DAALTKSIAAEAL-SQGVLILTCGTF  418 (453)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTS--CCB---CHHHHHHHHHHHH-HTTEECCEECTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcc--cCC---CHHHHHHHHHHHH-hCCCEEecCCCC
Confidence            3444555444444444555444443222223346688888843100  000   0012456777764 889999997544


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                               .+++|++++  .+++++++++++|.++++
T Consensus       419 ---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  447 (453)
T 4ffc_A          419 ---------GNVIRLLPPLVIGDDLLDEGITALSDIIR  447 (453)
T ss_dssp             ---------SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                     357888766  488999999999998876

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.10  E-value=8.5e-05  Score=54.16  Aligned_cols=103  Identities=9%  Similarity=0.019  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .++..+++.+.++++.+.+.|.+.|+++.. +.++.++|++++..+  +         +...+... +.++||.+.++..
T Consensus       278 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~-l~~~gi~v~~~~~  345 (417)
T 3n0l_A          278 DEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDRE--F---------SGKDADLA-LGNAGITANKNTV  345 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTSS--S---------CHHHHHHH-HHHTTEECEECCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCceEEEEEcccCC--C---------CHHHHHHH-HHHcCeEEecccc
Confidence            466788889999999999999887777644 455678999886432  1         24556665 4688999998765


Q ss_pred             cccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~  123 (126)
                      ++.... ......+|+++..      ++++++++++.|.++++
T Consensus       346 ~~~~~~-~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~  387 (417)
T 3n0l_A          346 PGEIRS-PFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD  387 (417)
T ss_dssp             TTCCSC-TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcc-cCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence            543210 1134679999863      46889999999988775

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=98.10  E-value=2.8e-05  Score=58.10  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +.+++++++..+..++.+.+.+.+++ +....+.| .|+++++...... ..+.........++++.|+ ++||.+.|+.
T Consensus       348 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~  424 (460)
T 3gju_A          348 MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDG-MLAAVEFVADKDD-RVFFDASQKIGPQVATALA-ASGVIGRAMP  424 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTT-TBCCCGGGCHHHHHHHHHH-HTTEECEECS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeee-EEEEEEEccCccc-cccccchHHHHHHHHHHHH-HCCeEEecCC
Confidence            45677788888877887777777663 33444554 4777777542100 0000000001446777765 7899999975


Q ss_pred             CcccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCF--FKKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~  123 (126)
                          .      .+++||+.  ..+++++++++++|.++++
T Consensus       425 ----~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  454 (460)
T 3gju_A          425 ----Q------GDILGFAPPLCLTREQADIVVSKTADAVK  454 (460)
T ss_dssp             ----S------SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ----C------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                1      47899994  4589999999999998876

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=98.04  E-value=3.9e-05  Score=55.64  Aligned_cols=107  Identities=9%  Similarity=0.078  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccC------CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVI------PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL   79 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~------p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV   79 (126)
                      .++++++++.++++++.+.+.|+++ ++.+..      +.+++++|+.++.... .         +..++.+.|. ++||
T Consensus       249 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~l~~~L~-~~gI  317 (388)
T 1b9h_A          249 LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE-E---------RRNALVDRLV-EAGL  317 (388)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH-H---------HHHHHHHHHH-HTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCc-c---------cHHHHHHHHH-HCCC
Confidence            3567888899999999999999887 777654      4678999999975210 0         3567888865 7899


Q ss_pred             eEeCCCCcccCcc----------------------cCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhhc
Q psy788           80 QGIPPSAFYSDEH----------------------KHLGENLIRYCFFK---KDETLREASSILQTWRNK  124 (126)
Q Consensus        80 ~v~pg~~f~~~~~----------------------~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~~  124 (126)
                      .+.+++.-.....                      .....+.+||++..   ++++++..++.|.+++++
T Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          318 PAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             CEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            9988753210000                      00012468999874   678899999999887654

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=98.02  E-value=2.7e-05  Score=57.44  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +.++++.++++++.+.+.|.++ +....+. |.|+|+++....   .        ... ++..|+ ++||.+.|+.    
T Consensus       327 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~-g~~~~i~~~~~~---~--------~~~-~~~~l~-~~Gv~v~~~~----  387 (419)
T 2eo5_A          327 VKDLLPHVNEIGKIFAEELQGL-ADDVRGI-GLAWGLEYNEKK---V--------RDR-IIGESF-KRGLLLLPAG----  387 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS-SSEEEEE-TTEEEEECSCHH---H--------HHH-HHHHHH-HTTEECEEET----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hhheEee-eEEEEEEEecCc---c--------HHH-HHHHHH-HCCCEEecCC----
Confidence            3347888999999999999875 3334444 557788884211   0        244 888875 8899999852    


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                             .+++|++++  .+++++++++++|.+++++
T Consensus       388 -------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          388 -------RSAIRVIPPLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             -------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                   368999775  4899999999999988753

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=97.97  E-value=8.4e-05  Score=56.24  Aligned_cols=92  Identities=5%  Similarity=-0.079  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..+++.+.+...++++.+.+.|.+. ++.+..+..+ ++|+..+..             +..++.+.|. ++||.+ +|.
T Consensus       372 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-------------~~~~l~~~L~-~~Gi~v-~g~  435 (514)
T 3mad_A          372 EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-------------NIYQVMEEMA-GRGWRL-NGL  435 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS-------------CHHHHHHHHH-TTTCBC-EEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC-------------CHHHHHHHHH-hcCCEe-ccC
Confidence            3567788889999999999999987 7887666665 666665431             3667888865 779987 543


Q ss_pred             CcccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      .|         ++++|++++.   +.+++++++++|.++++
T Consensus       436 ~~---------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~  467 (514)
T 3mad_A          436 HR---------PPAFHVALTLRHTEPGVVDRFLADLQDAVA  467 (514)
T ss_dssp             TT---------TTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred             CC---------CCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            22         4679999983   56889999999988765

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=97.96  E-value=5.1e-05  Score=55.20  Aligned_cols=91  Identities=5%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           11 YTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..+++.++++++.+.+.|++.+    .....+..|+++|+.++....          .+..++++.|. ++||.+.|+. 
T Consensus       302 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~l~-~~gi~v~~~~-  369 (406)
T 4adb_A          302 PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----------GQAKQISQEAA-KAGVMVLIAG-  369 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----------TCHHHHHHHHH-HTTEECEESS-
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----------HHHHHHHHHHH-HCCcEEeecC-
Confidence            5678888888898888887652    222233457899999875210          03567888875 6799999842 


Q ss_pred             cccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCF--FKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~  123 (126)
                                .+++|+++  ..+++++++++++|.++++
T Consensus       370 ----------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~  398 (406)
T 4adb_A          370 ----------GNVVRFAPALNVSEEEVTTGLDRFAAACE  398 (406)
T ss_dssp             ----------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ----------CCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                      47899954  4588999999999998875

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.92  E-value=0.00015  Score=52.45  Aligned_cols=102  Identities=7%  Similarity=0.035  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCccc-CC-----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           12 TISEELRPKREILADALDKAGMVPV-IP-----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~~-~p-----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ...+..++.++.+.+.|.+.++++. .|     .+++++|+.++......         +..++.+.|. +.||.+.+|.
T Consensus       261 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~l~~~l~-~~gi~v~~~~  330 (393)
T 1mdo_A          261 ALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGI---------TRDALMASLK-TKGIGTGLHF  330 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSS---------CHHHHHHHHH-HTTBCCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEeccccccc---------CHHHHHHHHH-hCCCCccccc
Confidence            3334444445556677766565543 23     46778999987310001         3567888864 7899999987


Q ss_pred             CcccC-----------cccC---CCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           86 AFYSD-----------EHKH---LGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~-----------~~~~---~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .....           .-+.   ...+.+|+++..  ++++++..++.|.++++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~  384 (393)
T 1mdo_A          331 RAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG  384 (393)
T ss_dssp             CCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            54100           0000   013589999984  88999999999988776

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=97.91  E-value=8.6e-05  Score=53.98  Aligned_cols=97  Identities=12%  Similarity=0.082  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPD---GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~---gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ++.++++++++++.+.+.|.+.|+++..|.   ++....+..+.              .+..+...| .++||.+.||..
T Consensus       273 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~L-~~~Gi~v~~g~~  337 (379)
T 3ke3_A          273 FDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER--------------DDMHKGSAF-AEAGLQIAAGVP  337 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC--------------HHHHSSHHH-HHTTCCCEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC--------------cchHHHHHH-HHCCeEEeCCcc
Confidence            567788888899999999988887765443   22222222221              122234554 588999999986


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +....  ....+.+|+++..  ++++++.+++.|.++++
T Consensus       338 ~~~~~--~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~  374 (379)
T 3ke3_A          338 LKVGE--PDNFKTFRLGLFGLDKLTDIDGTVERFEKALD  374 (379)
T ss_dssp             CSSCC--CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred             ccccc--cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence            65321  0135799999974  77889999999988765

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=97.90  E-value=9.1e-05  Score=55.11  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           12 TISEELRPKREILADALDKAGMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      .+.+.++++++.+.+.|++.++++  ..+..|.|+|++++.... .         +..+++..|. ++||.+.|+     
T Consensus       344 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~-~---------~~~~l~~~l~-~~Gv~v~~~-----  407 (439)
T 2oat_A          344 NLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD-W---------DAWKVCLRLR-DNGLLAKPT-----  407 (439)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS-C---------CHHHHHHHHH-HTTEECCBS-----
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc-H---------HHHHHHHHHH-HCCeEEecC-----
Confidence            356778888888889888765443  223456788999874210 0         2567888875 789999883     


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                            +.+++|++++  .+++++++++++|.++++
T Consensus       408 ------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  437 (439)
T 2oat_A          408 ------HGDIIRFAPPLVIKEDELRESIEIINKTIL  437 (439)
T ss_dssp             ------SSSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------CCCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence                  2478999776  489999999999998775

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=97.87  E-value=8.1e-05  Score=55.50  Aligned_cols=88  Identities=8%  Similarity=-0.011  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-----------CCCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHH
Q psy788           10 FYTISEELRPKREILADALDK-----------AGMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMT   74 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~-----------~g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~   74 (126)
                      ++++++.+.+.++++.+.|++           .|+++..|.    .|.++|+.++.              +..++++.|.
T Consensus       354 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--------------~~~~l~~~L~  419 (465)
T 3e9k_A          354 MKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV--------------PNKDVFQELE  419 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC--------------TTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC--------------CHHHHHHHHH
Confidence            788999999999999999987           367776665    36688888872              1345777764


Q ss_pred             HhCCeeEeCCCCcccCcccCCCCCeEEEEe-eC--ChhHHHHHHHHHHHhhh
Q psy788           75 KNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FK--KDETLREASSILQTWRN  123 (126)
Q Consensus        75 ~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~-~~--~~e~i~~~~~~l~~~~~  123 (126)
                       +.||.+.    +.       .++++|+++ ..  +.++++++++.|.++++
T Consensus       420 -~~Gi~v~----~~-------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~  459 (465)
T 3e9k_A          420 -KRGVVCD----KR-------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILD  459 (465)
T ss_dssp             -TTTEECE----EE-------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred             -HCCEEEe----cC-------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHH
Confidence             7799876    22       358999998 32  88899999999998876

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=97.84  E-value=8.9e-05  Score=55.13  Aligned_cols=101  Identities=17%  Similarity=0.199  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+++++++..+..++.+.+ +.+++.....+..|+|+|++++..... ..+.........+++..|+ ++||.+.|+   
T Consensus       339 ~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~---  412 (448)
T 3dod_A          339 NIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKET-KEPYPADRRIGYKVSLKMR-ELGMLTRPL---  412 (448)
T ss_dssp             THHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTT-TBCCCGGGCHHHHHHHHHH-HTTEECCEE---
T ss_pred             cHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCccc-ccccchhhHHHHHHHHHHH-HCCcEEecc---
Confidence            3455555555555555555 544432222233466888988642100 0000000001357888865 779999875   


Q ss_pred             ccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~  123 (126)
                               .+++|++  ++.+++++++++++|.++++
T Consensus       413 ---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  441 (448)
T 3dod_A          413 ---------GDVIAFLPPLASTAEELSEMVAIMKQAIH  441 (448)
T ss_dssp             ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                     1579995  45589999999999998875

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=97.83  E-value=0.00011  Score=54.25  Aligned_cols=105  Identities=12%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCccc--ccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP--MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+++++++..+.-++.+.+.+.++++....+..|+|+|++++....  ++......+.....+++..|+ ++||.+.|+.
T Consensus       322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~  400 (429)
T 4e77_A          322 GVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLML-EEGVYLAPSA  400 (429)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHH-HTTEECCSST
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHH-HCCeEEeecC
Confidence            3444444444444444444444445555556678899999875210  000000000012357888865 7799999863


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                                 ...+|+++..+++++++++++|.+++++
T Consensus       401 -----------~~~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          401 -----------FEAGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             -----------TSCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             -----------CCCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence                       1246777777999999999999988764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=97.82  E-value=0.00013  Score=54.89  Aligned_cols=97  Identities=5%  Similarity=-0.068  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..++.+.+++.++.+.+.+.|.+. ++.+..|.....+++.++...           ....++.+.|..+.++.+.|+..
T Consensus       369 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~-----------~~~~~l~~~L~~~g~~~~~~~~~  437 (475)
T 3k40_A          369 ENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSN-----------ERNEALLKRINGRGHIHLVPAKI  437 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCH-----------HHHHHHHHHHHHHTSCBCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCch-----------HHHHHHHHHHHhCCcEEEEeeEE
Confidence            456788888899999999999988 788765555556677775321           03567888876554445555432


Q ss_pred             cccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      +        +..++|++++.   ++++++.+++.|.++.+
T Consensus       438 ~--------g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  469 (475)
T 3k40_A          438 K--------DVYFLRMAICSRFTQSEDMEYSWKEVSAAAD  469 (475)
T ss_dssp             T--------TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             C--------CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            2        35799999873   67899999999987754

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=97.80  E-value=7.4e-05  Score=55.72  Aligned_cols=88  Identities=9%  Similarity=0.049  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----C--CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           12 TISEELRPKREILADALDKA----G--MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g--~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.+.++++++.+.+.|++.    .  +....+.|. |++++++...            +..+++..|+ ++||.+.|+.
T Consensus       352 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~-~~~~~~~~~~------------~~~~~~~~l~-~~Gv~v~~~g  417 (449)
T 2cjg_A          352 GLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGL-MCAFSLPTTA------------DRDELIRQLW-QRAVIVLPAG  417 (449)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETT-EEEEECSSHH------------HHHHHHHHHH-HTTEECEEET
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccE-EEEEEECChH------------HHHHHHHHHH-HCCeEEecCC
Confidence            45677788888888888753    2  333455555 5667886421            3567888876 7899999851


Q ss_pred             CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                                 .+++|++++  .+++++++++++|.+++++
T Consensus       418 -----------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          418 -----------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             -----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                       368999665  5899999999999988753

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=97.79  E-value=9.6e-05  Score=54.42  Aligned_cols=89  Identities=17%  Similarity=0.067  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHhCC---------------CcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHh
Q psy788           16 ELRPKREILADALDKAG---------------MVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKN   76 (126)
Q Consensus        16 ~~~~r~~~l~~~l~~~g---------------~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   76 (126)
                      ...++...+.+.++++.               +++..|+    |+|+.| +++.               ..+.+..++.+
T Consensus       266 ~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~---------------~~~~~~~~l~~  329 (404)
T 1e5e_A          266 AESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKS---------------GFEGAKKLLDN  329 (404)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETT---------------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCC---------------CHHHHHHHHHh
Confidence            34556666677776541               1222233    898888 7763               11223345678


Q ss_pred             CCeeEeCCCCcccCc-------c-c----------CCC--CCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           77 VKLQGIPPSAFYSDE-------H-K----------HLG--ENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        77 ~gV~v~pg~~f~~~~-------~-~----------~~~--~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .|| +.+|..|+...       . .          ..+  ++++|+|++.  +++++.++.|.++++
T Consensus       330 ~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~  393 (404)
T 1e5e_A          330 LKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLD  393 (404)
T ss_dssp             CSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             CCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHH
Confidence            899 78887776300       0 0          012  6899999998  455666666655543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=97.79  E-value=0.00017  Score=54.33  Aligned_cols=97  Identities=8%  Similarity=-0.015  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.++.+.+...++.+.+.+.|.+. |+.+..|....++++.++...           ....++.+.|..+..+.+.|+..
T Consensus       376 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-----------~~~~~l~~~L~~~g~~~~~~~~~  444 (481)
T 4e1o_A          376 KNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPN-----------SLTENVLKEIAKAGRLFLIPATI  444 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCH-----------HHHHHHHHHHHHHCSSBCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCch-----------HHHHHHHHHHHhCCeEEEEeeEE
Confidence            467788888999999999999887 788765555567777776421           02567888876443355554322


Q ss_pred             cccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      .        +..++|++++.   ++++++.++++|.++.+
T Consensus       445 ~--------g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  476 (481)
T 4e1o_A          445 Q--------DKLIIRFTVTSQFTTRDDILRDWNLIRDAAT  476 (481)
T ss_dssp             T--------TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             C--------CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            1        35789999874   57899999999987654

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=97.78  E-value=0.00015  Score=53.38  Aligned_cols=86  Identities=14%  Similarity=0.029  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+.+.++++++.+.+.|++.    ++....+. |.|+|++++..   .         +..++...|. ++||.+.|+   
T Consensus       331 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~~~~~~~---~---------~~~~l~~~l~-~~Gi~v~~~---  393 (429)
T 1s0a_A          331 DWQQQVADIEVQLREQLAPARDAEMVADVRVL-GAIGVVETTHP---V---------NMAALQKFFV-EQGVWIRPF---  393 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEE-TTEEEEEESSC---B---------CHHHHHHHHH-HTTEECCCB---
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe-eEEEEEEECCc---c---------cHHHHHHHHH-HCCCEEecc---
Confidence            35667778888888888764    23323444 45899998752   1         3567888875 789999872   


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                               .+++|++++  .+++++++++++|.++++
T Consensus       394 ---------~~~iRis~~~~~t~e~i~~~~~~l~~~~~  422 (429)
T 1s0a_A          394 ---------GKLIYLMPPYIILPQQLQRLTAAVNRAVQ  422 (429)
T ss_dssp             ---------TTEEEECCCTTCCHHHHHHHHHHHHHHTS
T ss_pred             ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                     258999965  489999999999998765

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=97.77  E-value=0.00017  Score=53.18  Aligned_cols=90  Identities=9%  Similarity=0.076  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC--CCc---ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           11 YTISEELRPKREILADALDKA--GMV---PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~--g~~---~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ..+++.++++++.+.+.|++.  +++   ...+. |.|+|++++....          .+..++++.|. ++||.+.|+.
T Consensus       320 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~v~~~~~~~----------~~~~~l~~~l~-~~Gi~v~~~~  387 (420)
T 2pb2_A          320 PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGM-GLLIGAELKPKYK----------GRARDFLYAGA-EAGVMVLNAG  387 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE-TTEEEEEECGGGT----------TCHHHHHHHHH-HTTEECEESS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-ceEEEEEECCCch----------HHHHHHHHHHH-HCCCEEEeCC
Confidence            356778888888888888764  222   23344 5678888864210          02567888875 6899999862


Q ss_pred             CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                                 ++++|++++  .+++++++++++|.++++
T Consensus       388 -----------~~~iRl~~~~~~t~eei~~~~~~l~~~l~  416 (420)
T 2pb2_A          388 -----------ADVMRFAPSLVVEEADIHEGMQRFAQAVG  416 (420)
T ss_dssp             -----------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                       368999965  488999999999998775

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=97.75  E-value=0.00015  Score=53.82  Aligned_cols=89  Identities=11%  Similarity=0.078  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhC--CCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA--GMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~--g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+.+.++++++.+.+.|++.  ++++  ..+..|.|+|++++...  .         +..+++..|. ++||.+.|+   
T Consensus       333 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~--~---------~~~~~~~~l~-~~Gv~v~~~---  397 (433)
T 1z7d_A          333 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL--V---------NVLDICLKLK-ENGLITRDV---  397 (433)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT--C---------CHHHHHHHHH-HTTEECCEE---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh--h---------HHHHHHHHHH-HCCeEEecC---
Confidence            35667777778888888764  4432  22345678899987421  0         2567888875 789999884   


Q ss_pred             ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                              +.+++|++++  .+++++++++++|.++++
T Consensus       398 --------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  427 (433)
T 1z7d_A          398 --------HDKTIRLTPPLCITKEQLDECTEIIVKTVK  427 (433)
T ss_dssp             --------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --------CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence                    1468999776  389999999999988765

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=97.71  E-value=0.00078  Score=51.21  Aligned_cols=100  Identities=14%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      ++..++++.++++.+.+.|.+.|+++.. +....++|++++..+  +         +..++... +.+.||.+.+++.++
T Consensus       333 ~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g--~---------~~~~~~~~-L~~~GI~v~~~~~p~  400 (490)
T 2a7v_A          333 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKG--L---------DGARAERV-LELVSITANKNTCPG  400 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTT--C---------CHHHHHHH-HHHTTEECEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCC--C---------CHHHHHHH-HHhCCeEEecCccCC
Confidence            4667788888999999999888888754 345678999987532  1         25566665 468999999877666


Q ss_pred             cCcccCCCCCeEEEEee------CChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFF------KKDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~------~~~e~i~~~~~~l~~~~~  123 (126)
                      ...  +-.+..+|++..      .++++++..++.|.++++
T Consensus       401 d~~--p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          401 DRS--AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             CCC--SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCC--CCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence            421  124578999662      266777777777766553

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=97.70  E-value=0.00011  Score=54.11  Aligned_cols=99  Identities=11%  Similarity=0.049  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .+.+.++++++.+.+.|++.    ++....+..|.|+|++++.... .+......+..+..+++..|+ ++||.+.||..
T Consensus       321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~  399 (424)
T 2e7u_A          321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF  399 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC
Confidence            46677777888887777653    5433223455689999864100 000000000012457888875 88999999741


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                                 ..+|+++..+++++++++++|.+++
T Consensus       400 -----------~~~~~~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          400 -----------EAAFLSVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             -----------SCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             -----------CceEeeccCCHHHHHHHHHHHHHhC
Confidence                       2378887779999999999998753

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=97.65  E-value=0.00027  Score=52.07  Aligned_cols=98  Identities=11%  Similarity=-0.059  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHh----CCCcccCCCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           14 SEELRPKREILADALDK----AGMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~----~g~~~~~p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      .+.++++++.+.+.|.+    +++....+..|.|+++++..... +.......+.....++++.|+ ++||.+.|+.   
T Consensus       326 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~---  401 (434)
T 3l44_A          326 YEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPSK---  401 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSST---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH-HCCeEEeecC---
Confidence            33444444444444443    44433334455677777743110 000000000011356777765 7899998862   


Q ss_pred             cCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                              .+++|+++..+++++++++++|.++++
T Consensus       402 --------~~~~rl~~~~t~e~i~~~l~~l~~~l~  428 (434)
T 3l44_A          402 --------YEAWFLTTEHTKEDIEYTIEAVGRAFA  428 (434)
T ss_dssp             --------TCCEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --------CCcEEEecccCHHHHHHHHHHHHHHHH
Confidence                    235788887799999999999998875

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=97.64  E-value=0.00039  Score=49.86  Aligned_cols=105  Identities=5%  Similarity=-0.086  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC----Cc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIP----DG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p----~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      .+++.+.+.++++++.+.+.|.++ ++.+..|    .+ ++++|+.++..+  ..        +..++.+.| .++||.+
T Consensus       244 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~l~~~L-~~~gi~v  312 (375)
T 2fnu_A          244 KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF--FT--------CKKLILESL-HKRGILA  312 (375)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG--GG--------GHHHHHHHH-HHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc--cc--------hHHHHHHHH-HHCCCCc
Confidence            467788899999999999999887 6666444    23 455688886421  10        255788886 5789999


Q ss_pred             eCC----C---Ccc-------cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           82 IPP----S---AFY-------SDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~pg----~---~f~-------~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .++    .   .|+       .........+++|++++.  ++++++..++.|.++++
T Consensus       313 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~  370 (375)
T 2fnu_A          313 QVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE  370 (375)
T ss_dssp             BCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            832    1   121       000000013789999985  78899999999988765

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=97.64  E-value=0.00039  Score=51.12  Aligned_cols=99  Identities=14%  Similarity=-0.005  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHh----CCCcccCCCcceEEEEeeCCcccc-cccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           14 SEELRPKREILADALDK----AGMVPVIPDGGYFMVADWTQLRPM-LRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~----~g~~~~~p~gg~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      .+.++++++.+.+.|.+    +++....+..|+++|+++...... +......+.....+++..|+ ++||.+.|+..  
T Consensus       323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~~~--  399 (427)
T 3fq8_A          323 YEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQF--  399 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSSTT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHH-HCCcEEecCCC--
Confidence            34444444545444443    344444556688999998642100 00000000012346778765 78999988641  


Q ss_pred             cCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           89 SDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                               ..+|+++..+++++++++++|.+++++
T Consensus       400 ---------~r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          400 ---------EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             ---------SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence                     246677777999999999999988753

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=97.63  E-value=0.0002  Score=52.87  Aligned_cols=99  Identities=15%  Similarity=0.004  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           13 ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+.++++++.+.+.|++.    ++....+..|.|+|++++.... .+......+.....+++..|. ++||.+.||.  
T Consensus       326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--  402 (434)
T 2epj_A          326 VYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPSN--  402 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEeccC--
Confidence            5566777777777777653    5443234456688999864100 000000000012457888875 7899999973  


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                               ...+|+++..+++++++++++|.++++
T Consensus       403 ---------~~~~~~~~~~t~e~i~~~l~~l~~~l~  429 (434)
T 2epj_A          403 ---------LEAVFTGLPHQGEALEIAVEGLRSSLK  429 (434)
T ss_dssp             ---------TSCEECCTTCSHHHHHHHHHHHHHHHH
T ss_pred             ---------CCcEEEeccCCHHHHHHHHHHHHHHHH
Confidence                     124788877799999999999988775

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=97.59  E-value=0.00034  Score=52.49  Aligned_cols=97  Identities=6%  Similarity=-0.014  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ..+++.+.+.+.++++.+.+.|.+. ++.+. +|.+++++| .++...           ....++.+.|. +.|+.+.++
T Consensus       371 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~-----------~~~~~l~~~L~-~~g~~~~~~  437 (486)
T 1js3_A          371 VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGSD-----------GLNEALLERIN-SARKIHLVP  437 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSCH-----------HHHHHHHHHHH-HHTSCBCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEE-EecChH-----------HHHHHHHHHHH-hcCCEEEEE
Confidence            3567888888899999999999887 77764 578887665 443210           01467888865 556554443


Q ss_pred             CCcccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      ..|.       +.+++|++++.   +.++++.++++|.++++
T Consensus       438 ~~~~-------~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~  472 (486)
T 1js3_A          438 CRLR-------GQFVLRFAICSRKVESGHVRLAWEHIRGLAA  472 (486)
T ss_dssp             EEET-------TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEC-------CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            3342       35799999863   67789999999887654

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=97.57  E-value=0.00035  Score=52.12  Aligned_cols=101  Identities=6%  Similarity=-0.139  Sum_probs=59.5

Q ss_pred             hHHHHHH-HHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            8 CYFYTIS-EELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         8 ~~l~~~r-~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .++++++ +.....++.+.+.|.+++ +....+.|. |+++++...... ..+-........+++..|+ ++||.+.|+.
T Consensus       343 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~g  419 (459)
T 4a6r_A          343 GIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM-VQAFTLVKNKAK-RELFPDFGEIGTLCRDIFF-RNNLIMRACG  419 (459)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT-EEEEEECSBTTT-TBCCSSTTHHHHHHHHHHH-HTTEECEEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCccc-cccccchHHHHHHHHHHHH-HCCeEEecCC
Confidence            4555555 444455555545555443 444455554 677777532100 0000000011456778765 7799998851


Q ss_pred             CcccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhh
Q psy788           86 AFYSDEHKHLGENLIRYCF--FKKDETLREASSILQTWRN  123 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~  123 (126)
                                  +++||+.  ..+++++++++++|.++++
T Consensus       420 ------------~~iRi~~~~~~t~e~i~~~l~~l~~~l~  447 (459)
T 4a6r_A          420 ------------DHIVSAPPLVMTRAEVDEMLAVAERCLE  447 (459)
T ss_dssp             ------------TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------------CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                        5799994  4589999999999988775

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.0011  Score=49.66  Aligned_cols=91  Identities=9%  Similarity=0.045  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-C-CCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            8 CYFYTISEELRPKREILADALDK-A-GMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ..++++.+...++++.+.+.|.+ + |+.+. +|.++++.| ..+.    .         +..++.+.|. +.||.+.++
T Consensus       341 ~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~-~~~~----~---------~~~~l~~~L~-~~Gi~v~~~  405 (497)
T 3mc6_A          341 NGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISF-SSKT----L---------NIHELSDRLS-KKGWHFNAL  405 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEE-ECTT----T---------THHHHHHHHH-TTTCBCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEE-eCCC----C---------CHHHHHHHHH-hCCEEEecC
Confidence            45677788888899999999998 4 78775 566675555 4432    1         3667888865 789987654


Q ss_pred             CCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      .          .+..+|++++. +.+++++.++.|.++++
T Consensus       406 ~----------~~~~~ri~~~~~t~e~i~~~~~~L~~~l~  435 (497)
T 3mc6_A          406 Q----------KPVALHMAFTRLSAHVVDEICDILRTTVQ  435 (497)
T ss_dssp             C----------SSCCEEEECCTTTTCTHHHHHHHHHHHHH
T ss_pred             C----------CCCeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            2          13467999986 78889999999988765

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=97.50  E-value=0.00049  Score=50.47  Aligned_cols=103  Identities=14%  Similarity=0.019  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCccc--CC-----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPV--IP-----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVK   78 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~--~p-----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g   78 (126)
                      +++++++++.++++++.+.+.|.++ |+.+.  .|     ..+..+++.++...  .         +..++...+   .+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~l---~~  366 (432)
T 3a9z_A          301 SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ--L---------RGYMVLAQC---QT  366 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT--C---------CHHHHHHHC---SS
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC--C---------cHHHHHHHh---cC
Confidence            3477889999999999999999885 54432  33     23445666665421  1         244555543   37


Q ss_pred             eeEeCCCCcccCc---------ccC----CCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           79 LQGIPPSAFYSDE---------HKH----LGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        79 V~v~pg~~f~~~~---------~~~----~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +.+.+|..+....         ...    ...+++|++++.  ++++++.+++.|.++++
T Consensus       367 i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~  426 (432)
T 3a9z_A          367 LLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN  426 (432)
T ss_dssp             EECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            8888887664310         000    014799999996  78999999999988765

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=97.49  E-value=0.00034  Score=51.79  Aligned_cols=92  Identities=11%  Similarity=-0.010  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCC-Ccc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           13 ISEELRPKREILADALDKAG-MVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~g-~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +.+.++++++.+.+.|.+.+ +++  ..+..|+|+|++++....  .     ...+..++...|. ++||.+.|+     
T Consensus       350 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~--~-----~~~~~~~~~~~l~-~~Gv~v~~~-----  416 (449)
T 3a8u_X          350 LVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDG--D-----AIVRPFEAGMALW-KAGFYVRFG-----  416 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTT--B-----SSHHHHHHHHHHH-HHTEECEEE-----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcc--c-----ccccHHHHHHHHH-HCCcEEecC-----
Confidence            56777788888888887642 332  123457789999975210  0     0001236888875 679999985     


Q ss_pred             CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                            + +++|+++.  .+++++++++++|.++++.
T Consensus       417 ------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~  446 (449)
T 3a8u_X          417 ------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK  446 (449)
T ss_dssp             ------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence                  1 57999954  5899999999999988764

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.49  E-value=0.00064  Score=51.23  Aligned_cols=101  Identities=8%  Similarity=-0.008  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ..+++.+.+...++++.+.+.|++. ++++ .+|.++ ++++.+.......+       .-..++...+ .+.|+.+.++
T Consensus       389 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-~v~f~~~~~~~~~~-------~l~~~l~~~l-~~~G~~~~~~  459 (497)
T 2qma_A          389 PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS-TVLFRATHETADLD-------ELNKALRLEA-LTRGIAVLGE  459 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSS-EEEEEECCSSSCHH-------HHHHHHHHHH-HHHTSCBCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCce-EEEEEEcCCccCHH-------HHHHHHHHHH-HhCCCEEEEe
Confidence            3567778888889999999999887 7776 467777 45556643210000       0123566665 4779888776


Q ss_pred             CCcccCcccCCCCCeEEEEee---CChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFF---KKDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~---~~~e~i~~~~~~l~~~~~  123 (126)
                      +.+.       +.+++|++++   .+.++++..++.|.++++
T Consensus       460 ~~~~-------g~~~lRis~~~~~~t~edi~~~~~~l~~~~~  494 (497)
T 2qma_A          460 TIVD-------GKTALKFTILNPCLTTSDFESLLSKINMLAV  494 (497)
T ss_dssp             EEET-------TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEC-------CEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            5442       3579999983   388899999999988765

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=97.48  E-value=0.00053  Score=51.55  Aligned_cols=88  Identities=15%  Similarity=0.019  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhC--CC----cccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           12 TISEELRPKREILADALDKA--GM----VPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~--g~----~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.+.++++++.+.+.|++.  ++    ....+.| ++++++++...            +...++..|+ ++||.+.|+ 
T Consensus       375 ~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g-~~~~~~~~~~~------------~~~~~~~~l~-~~Gv~~~~~-  439 (472)
T 1ohv_A          375 DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRG-TFCSFDTPDES------------IRNKLISIAR-NKGVMLGGC-  439 (472)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEET-TEEEEECSSHH------------HHHHHHHHHH-HTTEECEEE-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCc-eEEEEEeCChh------------HHHHHHHHHH-HCCeEEecC-
Confidence            35677777777787777654  22    2244554 46666775421            3567888876 789999883 


Q ss_pred             CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                                +.+++|++++  .+++++++++++|.+++++
T Consensus       440 ----------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  470 (472)
T 1ohv_A          440 ----------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD  470 (472)
T ss_dssp             ----------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ----------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                      1468999776  4899999999999988764

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=97.46  E-value=0.0005  Score=50.66  Aligned_cols=102  Identities=16%  Similarity=0.049  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           11 YTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +++++.++++++.+.+.|.+.    ++....+..|.|+++.+..... ++......+.....++++.|+ ++||.+.|+.
T Consensus       320 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~  398 (429)
T 3k28_A          320 PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC
Confidence            566777778888777777653    3322233345567776643110 000000000012356778765 7899998862


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                                 .+++|+++..+++++++++++|.+++++
T Consensus       399 -----------~~~~r~~~~~t~e~i~~~l~~l~~~l~~  426 (429)
T 3k28_A          399 -----------FEGLFLSTVHSDADIEATIAAAEIAMSK  426 (429)
T ss_dssp             -----------TSCBCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------CCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence                       2457888888999999999999988763

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=97.46  E-value=0.00066  Score=51.24  Aligned_cols=109  Identities=10%  Similarity=-0.067  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCccc---CCCcceEEEEeeCCcccccccCC---CCCchhhHHHHHHHHHhCCee
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPV---IPDGGYFMVADWTQLRPMLRLDT---ESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~---~p~gg~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      ..++.+.+...+.++.+.+.|.+. ++++.   .|.++++++...+......+...   ........++.+.|. +.|+.
T Consensus       382 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~G~~  460 (504)
T 2okj_A          382 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTT  460 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHH-HHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHH-hCCcE
Confidence            456777888888899999999887 77765   48889888765543100000000   000001346777765 66765


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEee---CChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFF---KKDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~---~~~e~i~~~~~~l~~~~~  123 (126)
                      ++++..+..      ..+++|++++   .+.++++..++.|.++.+
T Consensus       461 ~~~~~~~~~------~~~~lRis~~~~~~t~edi~~~~~~l~~~~~  500 (504)
T 2okj_A          461 MVGYQPQGD------KANFFRMVISNPAATQSDIDFLIEEIERLGQ  500 (504)
T ss_dssp             EEEEEEETT------EEEEEEECCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEeeEECC------ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            544333321      1368999997   378899999999988765

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=97.40  E-value=0.00086  Score=49.74  Aligned_cols=98  Identities=4%  Similarity=-0.168  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCC-----c--ccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788           12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQ-----L--RPMLRLDTESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~-----~--~~~~~~~~~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      .+.+.++++++.+.+.|++.    ++....+..|.|+|++++.     .  ...+......+.....+++..|+ ++||.
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~  403 (453)
T 2cy8_A          325 DVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVD  403 (453)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeE
Confidence            34566667777777776553    4433234456688999874     1  00000000000012457888876 68999


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      +.|+             +.+|+++..+++++++++++|.++++
T Consensus       404 v~~~-------------~~~~l~~~~t~~~i~~~l~~l~~~l~  433 (453)
T 2cy8_A          404 IGGR-------------GSVFLSAQHEREHVEHLVTTFDRVLD  433 (453)
T ss_dssp             CBTT-------------TEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EeCC-------------CCEEeeccCCHHHHHHHHHHHHHHHH
Confidence            8542             12678877799999999999988765

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=97.38  E-value=0.0017  Score=48.47  Aligned_cols=96  Identities=11%  Similarity=0.120  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe---
Q psy788            7 KCYFYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL---   79 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV---   79 (126)
                      ..+++.+++.+.+.++.+.+.|.+.    |+.+..|+ + ++++.+....            ...+++..|. +.||   
T Consensus       345 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~-~v~~~~~~~~------------~~~~l~~~L~-~~gi~~~  409 (456)
T 2z67_A          345 SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-S-PIASCISVNS------------DPVEIAAKLY-NLRVTGP  409 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-C-SSEEEEECSS------------CHHHHHHHHH-HTTEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-C-eEEEEEeccc------------HHHHHHHHHH-HcCCCcc
Confidence            3567888999999999999999886    77777777 5 4455662100            1346777765 6664   


Q ss_pred             eEe------CCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           80 QGI------PPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        80 ~v~------pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      .+.      +|..+...     ..+++|++++.  +.+++++.+++|.+++
T Consensus       410 rv~~~~g~f~G~~~~~~-----~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          410 RGIKKTDHFGNCYLGTY-----THDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             EEECTTCHHHHTCSSCC-----SCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             eEEeecCcccccccccc-----CcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            454      23333221     24799999983  8899999999998765

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=97.27  E-value=0.0017  Score=48.54  Aligned_cols=85  Identities=13%  Similarity=-0.029  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           13 ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      +.+.++++++.+.+.|.++    ++....+. |+|+|++++...            +..++++.|+ ++||.+.|.    
T Consensus       361 ~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~------------~~~~~~~~l~-~~Gv~v~~~----  422 (457)
T 3tfu_A          361 WRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPV------------DLAVATPAAL-DRGVWLRPF----  422 (457)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCC------------CHHHHHHHHH-HTTEECCCB----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCcc------------cHHHHHHHHH-HCCeEEEec----
Confidence            4556666677777777654    22223334 568888887531            3567888875 779999872    


Q ss_pred             cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                              .+++|++..  .+++++++++++|.++++
T Consensus       423 --------~~~lRi~p~~~~t~eei~~~l~~L~~~l~  451 (457)
T 3tfu_A          423 --------RNLVYAMPPYICTPAEITQITSAMVEVAR  451 (457)
T ss_dssp             --------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                    257999854  488999999999998876

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=97.25  E-value=0.0029  Score=46.28  Aligned_cols=105  Identities=12%  Similarity=0.030  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCc-ceEEE----EeeCCcc-cccccCCCCCchhhHHHHHHHHHhC-Ce
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPV-IPDG-GYFMV----ADWTQLR-PMLRLDTESDKYEDFKFAKWMTKNV-KL   79 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~-~p~g-g~~~~----i~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-gV   79 (126)
                      +++.+.+..++.++.+.+.|.++ ++++. .|++ +.+.|    +.++... ...         +..++.+.|. ++ ||
T Consensus       264 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~~~gI  333 (418)
T 2c81_A          264 ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGL---------NADQFCEILR-EKLNM  333 (418)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTC---------CHHHHHHHHH-HHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEcccccccc---------CHHHHHHHHH-HcCCC
Confidence            45556666666777788888776 67765 5676 44433    6666310 001         3667888875 66 99


Q ss_pred             e---EeCCCCcccCccc----------------------CCC-------CCeEEEEee--C-ChhHHHHHHHHHHHhhh
Q psy788           80 Q---GIPPSAFYSDEHK----------------------HLG-------ENLIRYCFF--K-KDETLREASSILQTWRN  123 (126)
Q Consensus        80 ~---v~pg~~f~~~~~~----------------------~~~-------~~~~Rl~~~--~-~~e~i~~~~~~l~~~~~  123 (126)
                      .   +.+|.........                      ...       .+.+|+++.  . ++++++..++.|.++++
T Consensus       334 ~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~  412 (418)
T 2c81_A          334 GTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR  412 (418)
T ss_dssp             CTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH
Confidence            9   8887521100000                      000       258999996  3 67888998888887765

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=97.23  E-value=0.0028  Score=47.03  Aligned_cols=101  Identities=6%  Similarity=-0.140  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccC-----CCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCee
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVI-----PDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~-----p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      +.++++.+.+.++++.+.+.|.++ ++.+..     |.+++ +.+.++.... .+         +..++.+.|. +.|+.
T Consensus       323 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~-v~f~~~~~~~~~~---------~~~~l~~~L~-~~Gi~  391 (452)
T 2dgk_A          323 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA-VCFKLKDGEDPGY---------TLYDLSERLR-LRGWQ  391 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSE-EEEEECTTCCCSC---------CHHHHHHHHH-HTTCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEE-EEEEecCcccccC---------CHHHHHHHHH-hcCCe
Confidence            456788889999999999999987 577653     34554 4445543100 01         2467888864 77886


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +.........    .+.+++|++++.  +.++++..++.|.++++
T Consensus       392 v~~~~~~~~~----~~~~~lRis~~~~~t~e~id~li~~l~~~~~  432 (452)
T 2dgk_A          392 VPAFTLGGEA----TDIVVMRIMCRRGFEMDFAELLLEDYKASLK  432 (452)
T ss_dssp             CCEEECSTTC----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eeeeeCCccc----CCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            5431111110    135689999985  57788888887776543

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=97.20  E-value=0.002  Score=48.43  Aligned_cols=97  Identities=16%  Similarity=0.098  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-C---CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA-G---MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~-g---~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      .+.+.++++.+.+.+.|+++ .   +....+.|. |+++++...... ..+..........+++.|+ +.||.+.|.   
T Consensus       350 ~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~-~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~---  423 (476)
T 3i5t_A          350 GIVDQAREMADYFAAALASLRDLPGVAETRSVGL-VGCVQCLLDPTR-ADGTAEDKAFTLKIDERCF-ELGLIVRPL---  423 (476)
T ss_dssp             THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETT-EEEEEECCC------CCHHHHHHHHHHHHHHH-HTTEECEEE---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eeEEEEecCccc-cccccchhHHHHHHHHHHH-HCCCEEEec---
Confidence            34566666777777777654 1   223344444 667777542100 0000000001346777765 779999881   


Q ss_pred             ccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~  123 (126)
                              + +++||+  ++.+++++++++++|.++++
T Consensus       424 --------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~  452 (476)
T 3i5t_A          424 --------G-DLCVISPPLIISRAQIDEMVAIMRQAIT  452 (476)
T ss_dssp             --------T-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --------C-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                    2 689999  66699999999999998875

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=97.17  E-value=0.0031  Score=46.98  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCc-ccCCC----------------cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHH
Q psy788           14 SEELRPKREILADALDKA-GMV-PVIPD----------------GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTK   75 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~~-g~~-~~~p~----------------gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   75 (126)
                      .++..++...+.+.|+++ ++. +..|.                |||.+|++++..    .        +...|.+.+ +
T Consensus       302 ~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~----~--------~~~~~~~~l-~  368 (430)
T 3ri6_A          302 IERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK----E--------ASYRFMDAL-K  368 (430)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH----H--------HHHHHHHHC-S
T ss_pred             HHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH----H--------HHHHHHHhC-C
Confidence            344566677888888876 444 44444                888999999832    1        355777764 4


Q ss_pred             hCCeeEeCCCCcccCc----------------ccCCCCCeEEEEeeC-ChhHHHHHHH
Q psy788           76 NVKLQGIPPSAFYSDE----------------HKHLGENLIRYCFFK-KDETLREASS  116 (126)
Q Consensus        76 ~~gV~v~pg~~f~~~~----------------~~~~~~~~~Rl~~~~-~~e~i~~~~~  116 (126)
                      -.++.+.+|..|..-.                .....++++|||++. +.+++.+.++
T Consensus       369 ~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~dl~  426 (430)
T 3ri6_A          369 LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDIL  426 (430)
T ss_dssp             SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHHHH
T ss_pred             cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHH
Confidence            6677888888776200                001247899999997 5555554443

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=97.17  E-value=0.0015  Score=47.67  Aligned_cols=103  Identities=4%  Similarity=-0.045  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +++.+.+..++..+.+.+.|.++ ++.+. .|+++.++|+.++...   .        +..++.+.| .++||.+.++..
T Consensus       272 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~---~--------~~~~l~~~L-~~~gI~v~~~~~  339 (399)
T 2oga_A          272 HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT---E--------RRDELRSHL-DARGIDTLTHYP  339 (399)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC---S--------SHHHHHHHH-HHTTBCCBCSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC---C--------CHHHHHHHH-HHCCCceecCCC
Confidence            34445555555666677777766 66653 4667777775554211   1        356788886 478999988532


Q ss_pred             cccC--------c-ccCC-------CCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           87 FYSD--------E-HKHL-------GENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~--------~-~~~~-------~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ....        + ....       ..+++|+++..  ++++++..++.|.++++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  394 (399)
T 2oga_A          340 VPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE  394 (399)
T ss_dssp             SCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence            1000        0 0000       02689999974  88899999999988765

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=97.15  E-value=0.001  Score=48.13  Aligned_cols=103  Identities=7%  Similarity=-0.065  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCC------Ccc-eEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIP------DGG-YFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p------~gg-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      +++++.+..++..+.+.+.|.+.++.+..+      .++ +.+++.++... ..         +..++.+.| .++||.+
T Consensus       266 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---------~~~~l~~~L-~~~GI~v  334 (391)
T 3dr4_A          266 RVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGL-ST---------TRDQVIKDL-DALGIES  334 (391)
T ss_dssp             THHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSC-SS---------CHHHHHHHH-HHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCcc-ch---------hHHHHHHHH-HHCCCce
Confidence            456667777777778888887766665433      223 34577776410 01         366788886 4789999


Q ss_pred             eCCCCcccCcc-------------cCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           82 IPPSAFYSDEH-------------KHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        82 ~pg~~f~~~~~-------------~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      .||........             .....+.+|+++..  ++++++..++.|.+++
T Consensus       335 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          335 RPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             EECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             eecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            98852110000             00024678999885  8889999999888764

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=97.01  E-value=0.0093  Score=45.13  Aligned_cols=98  Identities=8%  Similarity=0.038  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CcccCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           10 FYTISEELRPKREILADALDKAG-MVPVIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +..+.+...++.+.+.+.|.+++ +.+..|  ..+ ++.++++... .+         +..++++.| .+.|+.+.....
T Consensus       340 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-~v~f~~~~~~-~~---------~~~~l~~~L-~~~Gi~v~~~~~  407 (502)
T 3hbx_A          340 YRNVMENCRENMIVLREGLEKTERFNIVSKDEGVP-LVAFSLKDSS-CH---------TEFEISDML-RRYGWIVPAYTM  407 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSS-EEEEEESSCS-SC---------CHHHHHHHH-HTTTCBCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCce-EEEEEecCCC-cC---------CHHHHHHHH-HhCCcEEeeccC
Confidence            45666777777788999998884 777554  555 5556665421 01         345788886 588998743222


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ....    .+..++|++++.  +.++++..++.|.++++
T Consensus       408 p~~~----~~~~~lRisv~~~~t~edid~li~~L~~~l~  442 (502)
T 3hbx_A          408 PPNA----QHITVLRVVIREDFSRTLAERLVIDIEKVMR  442 (502)
T ss_dssp             CTTC----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             Cccc----CCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            2111    135789999984  67788888877776654

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=96.88  E-value=0.0088  Score=43.84  Aligned_cols=103  Identities=11%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccC-CCcc---eEEE-EeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVI-PDGG---YFMV-ADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~-p~gg---~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +++.++++.++.++.+.+.|.++ ++.+.. |+|+   +++| +.++......         +..++.+.| .+.||.+.
T Consensus       258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~l~~~L-~~~gI~v~  327 (424)
T 2po3_A          258 AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGI---------HRDLVMEVL-KAEGVHTR  327 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSS---------CHHHHHHHH-HHTTEECB
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchh---------hHHHHHHHH-HHCCCcee
Confidence            44555555666666677777665 666654 5555   3444 7776310001         356777775 58899998


Q ss_pred             CCCCcccC-cccC--------CCC-------CeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSD-EHKH--------LGE-------NLIRYCFF--KKDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~-~~~~--------~~~-------~~~Rl~~~--~~~e~i~~~~~~l~~~~~  123 (126)
                      |  .|... ....        ..+       +.+|+++.  .++++++..++.|.++++
T Consensus       328 ~--~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~  384 (424)
T 2po3_A          328 A--YFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT  384 (424)
T ss_dssp             C--TTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             c--ccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            8  23211 0000        001       22677633  388899999999987765

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=96.83  E-value=0.0024  Score=47.60  Aligned_cols=78  Identities=15%  Similarity=0.232  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CCCCcccCcccCCCC
Q psy788           19 PKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PPSAFYSDEHKHLGE   97 (126)
Q Consensus        19 ~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg~~f~~~~~~~~~~   97 (126)
                      +++..+.+.+.+.|+++..|+++.++|+.++.    .         +..++++.|. ++||.+. +            +.
T Consensus       271 ~~~~~l~~~l~~~g~~~~~~~~~~~l~i~~~~----~---------~~~~l~~~L~-~~GI~v~~~------------g~  324 (446)
T 2x3l_A          271 AKRAQLIECLENKGFEMLQVDDPLKLLIKYEG----F---------TGHDIQNWFM-NAHIYLELA------------DD  324 (446)
T ss_dssp             HHHHHHHHHHHHHTCEEEECSSTTEEEEECTT----S---------CHHHHHHHHH-HTTEEESEE------------CS
T ss_pred             HHHHHHHHHHHHcCCEECcCCCCeEEEEEeCC----c---------CHHHHHHHHH-HCCCEEEec------------CC
Confidence            33334444444337777666666789999873    1         3667888875 5699985 3            23


Q ss_pred             CeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           98 NLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        98 ~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +++|++++.  +++++ ..++.|.++++
T Consensus       325 ~~iRi~~~~~~t~e~i-~l~~aL~~~~~  351 (446)
T 2x3l_A          325 YQALAILPLWHHDDTY-LFDSLLRKIED  351 (446)
T ss_dssp             SCEEEECCCCCTTCCC-CHHHHHHHHHT
T ss_pred             CEEEEEeecCCCHHHH-HHHHHHHHHHH
Confidence            679999985  67778 88888877654

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=96.81  E-value=0.014  Score=41.75  Aligned_cols=104  Identities=11%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-C-Cccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            9 YFYTISEELRPKREILADALDKA-G-MVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g-~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .++.+.+..++..+.+.+.|.+. + +.+. .++++...|..+.-..   .        +..++.+.| .++||.+.|+.
T Consensus       246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~l~~~L-~~~gi~v~~~~  313 (374)
T 3uwc_A          246 QLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV---K--------YRDQLFQYL-KDNGIEVKIHY  313 (374)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE---T--------THHHHHHHH-HHTTBCCBCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc---C--------CHHHHHHHH-HHCCCccccCC
Confidence            35566666777777777777766 3 5542 3444444443332110   1        356788876 57899999985


Q ss_pred             CcccCccc----------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHK----------------HLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~----------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .......+                ....+.+|+++..  ++++++..++.|.+++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          314 PIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             SSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            21110000                0012789998884  889999999999988764

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=96.76  E-value=0.0046  Score=46.46  Aligned_cols=96  Identities=10%  Similarity=0.006  Sum_probs=57.0

Q ss_pred             HHHHHH-HHHHHHHHHHHhC---C-CcccCCCcceEEEEeeCCcccccccCCCCC-chhhHHHHHHHHHhCCeeEeCCCC
Q psy788           13 ISEELR-PKREILADALDKA---G-MVPVIPDGGYFMVADWTQLRPMLRLDTESD-KYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        13 ~r~~~~-~r~~~l~~~l~~~---g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.+.++ ++.+.+.+.|+++   + +....+.|. |+++++...... ..+.... .....++++.|+ ++||.+.|+  
T Consensus       347 ~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~-~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~--  421 (472)
T 3hmu_A          347 ILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGM-MASIALTPNKAS-RAKFASEPGTIGYICRERCF-ANNLIMRHV--  421 (472)
T ss_dssp             HHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETT-EEEEEECSCGGG-TCCBSSCTTHHHHHHHHHHH-HTTBCCEEE--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eEEEEEecCccc-cccccchhHHHHHHHHHHHH-HCCcEEEec--
Confidence            445555 5666666666544   2 333445555 666776532100 0000000 001456778765 789998874  


Q ss_pred             cccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~  123 (126)
                               + +++||+  +..+++++++++++|.++++
T Consensus       422 ---------g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~  450 (472)
T 3hmu_A          422 ---------G-DRMIISPPLVITPAEIDEMFVRIRKSLD  450 (472)
T ss_dssp             ---------T-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---------C-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                     1 589999  55689999999999988775

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=96.62  E-value=0.015  Score=43.05  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCC----------------cceEEEEeeCCccc-ccccCCCCCchhhHHH
Q psy788            9 YFYTISEELRPKREILADALDKA-GMV-PVIPD----------------GGYFMVADWTQLRP-MLRLDTESDKYEDFKF   69 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~-~~~p~----------------gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~   69 (126)
                      ++....+...+++..+.+.|+++ ++. +..|.                +|.++|++++.... ..+        ....|
T Consensus       276 ~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~--------~~~~~  347 (414)
T 3ndn_A          276 TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQ--------RAFEV  347 (414)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHH--------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHH--------HHHHH
Confidence            44555566778888899999876 332 22222                57799999975200 000        24567


Q ss_pred             HHHHHHhCCeeEeCCCCcccCcc----------------cCCCCCeEEEEeeC-ChhHHHHHH
Q psy788           70 AKWMTKNVKLQGIPPSAFYSDEH----------------KHLGENLIRYCFFK-KDETLREAS  115 (126)
Q Consensus        70 ~~~l~~~~gV~v~pg~~f~~~~~----------------~~~~~~~~Rl~~~~-~~e~i~~~~  115 (126)
                      ...| +..++.+.+|..+..-..                ....++++|||++. +.+++.+.+
T Consensus       348 ~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl  409 (414)
T 3ndn_A          348 LDKM-RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADI  409 (414)
T ss_dssp             HHHC-SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHH
T ss_pred             HHhC-ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHH
Confidence            7764 567788888876643100                01246899999998 444444433

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=96.57  E-value=0.033  Score=40.87  Aligned_cols=98  Identities=8%  Similarity=0.100  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccC--C--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVI--P--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~--p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++.+.++.++..+++.+.|++. |+.+..  +  .++.-+-+.++......+        -+..+...+ .+.||.+.+|
T Consensus       271 ~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~--------~~~~~l~~l-~~~Gi~~~~g  341 (377)
T 3e77_A          271 AAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDA--------LEKRFLDKA-LELNMLSLKG  341 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHH--------HHHHHHHHH-HHTTEESCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchh--------HHHHHHHHH-HHCCcEEeCC
Confidence            6677888888889999999887 666422  1  234445556664200000        123566665 4789999887


Q ss_pred             CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788           85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN  125 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~  125 (126)
                      ..         ..+.+|+|+..  +.++++..++.|.++.++|
T Consensus       342 ~~---------~~g~iRiS~~~~~t~edId~l~~al~~~~~~~  375 (377)
T 3e77_A          342 HR---------SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             CT---------TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CC---------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence            41         13459999985  8899999999999988765

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=96.46  E-value=0.00063  Score=51.22  Aligned_cols=56  Identities=16%  Similarity=-0.008  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHhCCeeEeCCC------------CcccCc----ccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           66 DFKFAKWMTKNVKLQGIPPS------------AFYSDE----HKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~------------~f~~~~----~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...|.+.| ...||.+.+|.            .+....    .....++++|++++.  |++++.+++|.+++++
T Consensus       390 ~~~~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~  461 (464)
T 1ibj_A          390 SKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             HHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhc-CcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence            34577775 46899998886            122110    000125799999999  7789999999887753

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=96.42  E-value=0.025  Score=42.91  Aligned_cols=106  Identities=12%  Similarity=-0.015  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC-CCccc---CCCcceEEEEeeCCcccccccCCCC-C-----chhhHHHHHHHHHh
Q psy788            7 KCYFYTISEELRPKREILADALDKA-GMVPV---IPDGGYFMVADWTQLRPMLRLDTES-D-----KYEDFKFAKWMTKN   76 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~---~p~gg~~~~i~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~~   76 (126)
                      ..+++.+.++..++.+++.+.|++. |+++.   .|..++.+|.-.+...   +..... .     .....++.+.|. +
T Consensus       384 ~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~---~~~~~~~~~~~~l~~~~~~l~~~L~-~  459 (511)
T 3vp6_A          384 TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL---RGVPDSPQRREKLHKVAPKIKALMM-E  459 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGG---SSCCCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccc---cccccchhHHHHHHHHHHHHHHHHH-h
Confidence            4577888889999999999999887 77764   4778876654444321   100000 0     001235777765 5


Q ss_pred             CCeeEeCCCCcccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhh
Q psy788           77 VKLQGIPPSAFYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWR  122 (126)
Q Consensus        77 ~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~  122 (126)
                      +|+.++. ..+...     +.+++|+++++   +.++++..++.|.++-
T Consensus       460 ~G~~~~~-~~~~~~-----~~~~lRi~~~~~~~t~~di~~ll~~i~~~~  502 (511)
T 3vp6_A          460 SGTTMVG-YQPQGD-----KANFFRMVISNPAATQSDIDFLIEEIERLG  502 (511)
T ss_dssp             HTSCEEE-EEEETT-----EEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCEEEE-EEEeCC-----ceEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            5765544 222211     24689999952   6788888888877653

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=96.25  E-value=0.085  Score=38.76  Aligned_cols=94  Identities=12%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC-cc-cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKAGM-VP-VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~-~~-~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ++.+.++.++..+.+.+.|++.++ .. ..+  .+...+-+.++...  +          +.++...| .+.||.+.+|.
T Consensus       286 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~--~----------~~~~~~~L-~~~gI~~~~g~  352 (386)
T 3qm2_A          286 VAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNT--L----------DKVFLEES-FAAGLHALKGH  352 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGG--G----------HHHHHHHH-HHTTEECCBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCcc--c----------cHHHHHHH-HHCCCEEeCCC
Confidence            566777888888888888887654 21 112  23335555665321  1          35666664 68899987763


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN  125 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~  125 (126)
                      .-         .+.+|+|+..  +.++++..++.|.++.++|
T Consensus       353 ~~---------~~~iRiS~~~~~t~edId~l~~~l~~~~~~~  385 (386)
T 3qm2_A          353 RV---------VGGMRASIYNAMPIEGVKALTDFMIDFERRH  385 (386)
T ss_dssp             TT---------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CC---------cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            21         2349999985  7899999999999888764

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.07  E-value=0.13  Score=37.48  Aligned_cols=94  Identities=12%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-C-ccc-CC--CcceEEEEeeCC-cccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788           10 FYTISEELRPKREILADALDKAG-M-VPV-IP--DGGYFMVADWTQ-LRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g-~-~~~-~p--~gg~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++.+.++.++..+++.+.|++.+ + .+. .+  .+...+-+.++. ..  +          +.++...| .++||.+.+
T Consensus       259 ~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~--~----------~~~~~~~L-~~~gI~~~~  325 (361)
T 3m5u_A          259 LDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKD--L----------EPLFVKEA-EEAGMIGLK  325 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTT--H----------HHHHHHHH-HHTTEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchh--h----------hHHHHHHH-HHCCCEEec
Confidence            66778888888899999998874 5 332 22  123344455553 11  1          24677664 688999887


Q ss_pred             CCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN  125 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~  125 (126)
                      |..  .       .+.+|+|+..  +.++++..++.|.++.++|
T Consensus       326 g~~--~-------~g~iRiS~~~~~t~edId~l~~al~~~~~~~  360 (361)
T 3m5u_A          326 GHR--I-------LGGIRASIYNALNLDQVKTLCEFMKEFQGKY  360 (361)
T ss_dssp             CCT--T-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--c-------cCeEEEEccCCCCHHHHHHHHHHHHHHHHhc
Confidence            642  1       2459999985  8899999999999888764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=96.02  E-value=0.028  Score=40.84  Aligned_cols=38  Identities=11%  Similarity=-0.067  Sum_probs=22.3

Q ss_pred             HHHHHHHHhCCeeEeCCCCcccC-----------c-----ccCCCCCeEEEEeeC
Q psy788           68 KFAKWMTKNVKLQGIPPSAFYSD-----------E-----HKHLGENLIRYCFFK  106 (126)
Q Consensus        68 ~~~~~l~~~~gV~v~pg~~f~~~-----------~-----~~~~~~~~~Rl~~~~  106 (126)
                      .+...+ ...|+.+.+|+.|..-           .     .....++++|+|++.
T Consensus       326 ~l~~~~-~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~  379 (398)
T 2rfv_A          326 RMINSV-ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL  379 (398)
T ss_dssp             HHHTTC-SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCS
T ss_pred             HHHHhC-CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecC
Confidence            444442 3458889999876310           0     000126899999997

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=95.87  E-value=0.061  Score=38.98  Aligned_cols=114  Identities=11%  Similarity=-0.094  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----cce-EEEEeeCCccc------cc---ccCCCCCchhhHHHHHHH
Q psy788            8 CYFYTISEELRPKREILADALDKAGMVPVIPD----GGY-FMVADWTQLRP------ML---RLDTESDKYEDFKFAKWM   73 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~----gg~-~~~i~~~~~~~------~~---~~~~~~~~~~~~~~~~~l   73 (126)
                      +++++.++.++++++.+.+.|.+. +++..+.    +++ .+++.++....      .+   +..+.....+..++.+.|
T Consensus       243 ~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  321 (394)
T 1o69_A          243 EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDL  321 (394)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHH
Confidence            567788889999999999999876 5544332    454 46777763100      00   000000001355788886


Q ss_pred             HHhCCeeEeCCCCcccCcccCCC-------------CCeEEEEee-C-ChhHHHHHHHHHHHhhh
Q psy788           74 TKNVKLQGIPPSAFYSDEHKHLG-------------ENLIRYCFF-K-KDETLREASSILQTWRN  123 (126)
Q Consensus        74 ~~~~gV~v~pg~~f~~~~~~~~~-------------~~~~Rl~~~-~-~~e~i~~~~~~l~~~~~  123 (126)
                       .+.||.+.||+...........             .+.+|+... . ++++++..++.|.++++
T Consensus       322 -~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          322 -KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             -HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             -HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence             5789999998532110000000             033444444 3 78899999999988765

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=95.59  E-value=0.07  Score=38.44  Aligned_cols=100  Identities=7%  Similarity=-0.049  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--Ccce-EEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPVIP--DGGY-FMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p--~gg~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++++...+..++.++.+.+.|.++ ++.+..+  .+++ .+++.++... ..         +..++.+.| .++||.+.+
T Consensus       266 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---------~~~~l~~~L-~~~gI~v~~  334 (390)
T 3b8x_A          266 KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDS-GV---------IRKQLVENL-NSAGIECRP  334 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTS-CC---------CHHHHHHHH-HHTTBCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcC-cc---------cHHHHHHHH-HHCCCCeee
Confidence            456677777888888888899876 6665443  3444 3667776310 01         256788886 578999887


Q ss_pred             ---CCCccc-Cc-c--cC----C-------CCCeEEEEeeC--ChhHHHHHHHHH
Q psy788           84 ---PSAFYS-DE-H--KH----L-------GENLIRYCFFK--KDETLREASSIL  118 (126)
Q Consensus        84 ---g~~f~~-~~-~--~~----~-------~~~~~Rl~~~~--~~e~i~~~~~~l  118 (126)
                         |+.... .. .  ..    .       ..+.+||++..  ++++++..++.|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          335 IVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             STTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             ecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence               332111 00 0  00    0       12469999985  777877776654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=95.45  E-value=0.078  Score=40.03  Aligned_cols=107  Identities=11%  Similarity=-0.079  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEEeeCCcccccccCCCCCchh-----hHHHHHHHHHhCCee
Q psy788            8 CYFYTISEELRPKREILADALDKA-GMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYE-----DFKFAKWMTKNVKLQ   80 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~gV~   80 (126)
                      ..++++.+...+..+.+.+.|.+. ++++. +|..+.+++...+.......  +..+...     ...+...+. +.|+.
T Consensus       397 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~--~~~~~~~~l~~~~~~l~~~l~-~~G~~  473 (515)
T 2jis_A          397 QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQ--ESPDYHERLSKVAPVLKERMV-KEGSM  473 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCT--TSTTHHHHHHTHHHHHHHHHH-HHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccc--cchhHHHHHHHHHHHHHHHHH-hcCCE
Confidence            456677888888899999999887 77764 45566665544442100000  0000000     012445543 55654


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEee---CChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFF---KKDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~---~~~e~i~~~~~~l~~~~~  123 (126)
                      .......  .    ...+++|++++   .+.++++..++.|.++.+
T Consensus       474 ~~~~~~~--~----~~~~~lRis~~~~~~t~edid~~~~~l~~~~~  513 (515)
T 2jis_A          474 MIGYQPH--G----TRGNFFRVVVANSALTCADMDFLLNELERLGQ  513 (515)
T ss_dssp             EEEEEEE--T----TEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEE--C----CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            4221111  1    12478999995   488899999999987764

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=95.30  E-value=0.24  Score=35.67  Aligned_cols=96  Identities=9%  Similarity=0.040  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-Cc-cc-----------------CCCcceEEEEeeCCcccccccCCCCCchhhHHH
Q psy788            9 YFYTISEELRPKREILADALDKAG-MV-PV-----------------IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKF   69 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g-~~-~~-----------------~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~   69 (126)
                      ++....+.+.+++..+.+.|.+++ +. +.                 ...|++ +.+.++.              ....+
T Consensus       247 ~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~  311 (386)
T 1cs1_A          247 TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAM-LSFELDG--------------DEQTL  311 (386)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEESS--------------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceE-EEEEECC--------------CHHHH
Confidence            455566677788888888887652 21 10                 112554 4455653              13345


Q ss_pred             HHHHHHhCCeeEeCCCCcc------------c--Cc------ccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           70 AKWMTKNVKLQGIPPSAFY------------S--DE------HKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        70 ~~~l~~~~gV~v~pg~~f~------------~--~~------~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ... +.+.||.+.++ .|+            .  ..      .....++++|++++.  +..++.+++|.++++
T Consensus       312 ~~~-l~~~gi~~~~~-~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~  381 (386)
T 1cs1_A          312 RRF-LGGLSLFTLAE-SLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFR  381 (386)
T ss_dssp             HHH-HHTCSSSEEBS-CCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             HHH-HHhCCcceEcc-cCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHH
Confidence            555 46889988643 222            0  00      000125899999998  334555666655544

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=94.14  E-value=0.0036  Score=47.28  Aligned_cols=97  Identities=10%  Similarity=0.044  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcc-cccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           13 ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLR-PMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+.++++.+.+.+.|++.    ++....+..|.++|+.+.... .++......+......++..|+ ++||.+.|+. |
T Consensus       357 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~-~  434 (465)
T 2yky_A          357 AASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRG-M  434 (465)
Confidence            4455555555555555543    343445667888999886410 0000000000001346778865 8899999975 3


Q ss_pred             ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .        .    ++++.+++++++++++|.++++
T Consensus       435 ~--------~----~s~~~t~edid~~l~~l~~~l~  458 (465)
T 2yky_A          435 Y--------A----LSLEIADAGRDAFAEALADFIG  458 (465)
Confidence            1        1    6677788889999999987765

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=95.07  E-value=0.17  Score=37.81  Aligned_cols=100  Identities=12%  Similarity=0.016  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CC-cccCC----------------CcceEEEEeeCCcccccccCCCCCchhhHHHHH
Q psy788           10 FYTISEELRPKREILADALDKA-GM-VPVIP----------------DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAK   71 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~-~~~~p----------------~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   71 (126)
                      +....+.+.++...+.+.|.++ ++ .+..|                ..|-+++++++...   +        +...|..
T Consensus       310 l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~---~--------~~~~~l~  378 (445)
T 1qgn_A          310 LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL---L--------TTAKFVD  378 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH---H--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH---H--------HHHHHHH
Confidence            3334455667788889999876 34 33333                13447778886420   0        2345555


Q ss_pred             HHHHhCCeeEeCCCCcccCc----------------ccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           72 WMTKNVKLQGIPPSAFYSDE----------------HKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        72 ~l~~~~gV~v~pg~~f~~~~----------------~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .| +..++.+..|+....-.                .....++.+|+|++.  |+++..++.|.+++.
T Consensus       379 ~l-~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~  443 (445)
T 1qgn_A          379 AL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALD  443 (445)
T ss_dssp             HC-SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             hC-CCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Confidence            53 33478888887653100                000125899999996  345666666666554

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=95.01  E-value=0.042  Score=39.32  Aligned_cols=102  Identities=9%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      ++.+.+..++..+.+.+.|.+.++.+. .+.++...|..++-..   .        +..++.+.| .++||.+.++....
T Consensus       246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~l~~~L-~~~gI~v~~~~~~~  313 (373)
T 3frk_A          246 LDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS---E--------KRDELQKYL-NNNGIGTLIHYPIP  313 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE---S--------SHHHHHHHH-HHTTBCCBCSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe---C--------CHHHHHHHH-HHCCCCcccCcCCc
Confidence            344445555555555555554443321 2333333333222110   1        356788876 57799998765211


Q ss_pred             cCccc----------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           89 SDEHK----------------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        89 ~~~~~----------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ....+                ....+.+|+++..  ++++++..++.|.++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~  366 (373)
T 3frk_A          314 IHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL  366 (373)
T ss_dssp             GGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred             cccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence            10000                0012689999985  88899999998887654

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=94.86  E-value=0.15  Score=37.38  Aligned_cols=24  Identities=21%  Similarity=0.070  Sum_probs=14.8

Q ss_pred             CCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           97 ENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        97 ~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      ++++|+|++.  +..++.++.|.+++
T Consensus       372 ~~~iRlSvg~--e~~~d~i~~l~~al  395 (403)
T 3cog_A          372 DTLIRLSVGL--EDEEDLLEDLDQAL  395 (403)
T ss_dssp             TTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             cCeEEEEeCC--CCHHHHHHHHHHHH
Confidence            6899999998  22234444444444

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=94.63  E-value=0.21  Score=36.27  Aligned_cols=96  Identities=14%  Similarity=0.037  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCc-ccCCC----------------cceEEEEeeCCcccccccCCCCCchhhHHHHHHHH
Q psy788           13 ISEELRPKREILADALDKA-GMV-PVIPD----------------GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMT   74 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~-g~~-~~~p~----------------gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~   74 (126)
                      ..+...++...+.+.|+++ .+. +..|.                .|..++++++...   .        ....|...| 
T Consensus       265 ~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~---~--------~~~~~~~~l-  332 (392)
T 3qhx_A          265 RMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR---T--------AAEQLCAKT-  332 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH---H--------HHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH---H--------HHHHHHHhC-
Confidence            3455567777788888776 321 22221                2557889887521   0        345666664 


Q ss_pred             HhCCeeEeCCCCcccCccc-------------CCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           75 KNVKLQGIPPSAFYSDEHK-------------HLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        75 ~~~gV~v~pg~~f~~~~~~-------------~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      +..++.+..|+.+.....+             ...++.+|||++.  +..++-++.|.+++
T Consensus       333 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al  391 (392)
T 3qhx_A          333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL  391 (392)
T ss_dssp             SSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             CCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence            5677888888765421000             0136789999997  23344455555443

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=93.24  E-value=0.34  Score=33.86  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=14.9

Q ss_pred             CCeEEEEeeC--ChhHHHHHHHHHH
Q psy788           97 ENLIRYCFFK--KDETLREASSILQ  119 (126)
Q Consensus        97 ~~~~Rl~~~~--~~e~i~~~~~~l~  119 (126)
                      ++++|++++.  +++.++..++.|.
T Consensus       304 ~~~iRis~~~~~t~~~i~~l~~~l~  328 (331)
T 1pff_A          304 DNLIRLSVGCENVQDIIDDLKQALD  328 (331)
T ss_dssp             TTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEecCCHHHHHHHHHHHHH
Confidence            5899999997  3344554444443

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=92.85  E-value=1.7  Score=31.30  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Q psy788           10 FYTISEELRPKREILADALDKA   31 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~   31 (126)
                      +....+...++...+.+.|.++
T Consensus       262 ~~~~~~~~~~~~~~l~~~L~~~  283 (398)
T 1gc0_A          262 LNLRMDRHCANAQVLAEFLARQ  283 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            4455566677778888888764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=92.39  E-value=0.41  Score=34.07  Aligned_cols=98  Identities=6%  Similarity=-0.007  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc-CCCcce----EEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPV-IPDGGY----FMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~gg~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      ++...++.++..+.+.+.|.+.++.+. .+.++.    ++++.++               +..++.+.| .++||.+.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~L-~~~GI~~~~~  308 (367)
T 3nyt_A          245 FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------------NRESVQASL-KAAGVPTAVH  308 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---------------SHHHHHHHH-HHHTCCCBCS
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---------------CHHHHHHHH-HHCCCceecc
Confidence            455556666666777788877654432 233322    2223332               255677775 5789998876


Q ss_pred             CCcccCc-cc------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           85 SAFYSDE-HK------------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        85 ~~f~~~~-~~------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..-.... ..            ....+.+|+++..  ++++++..++.|.++-.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~~~  362 (367)
T 3nyt_A          309 YPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNLEH  362 (367)
T ss_dssp             CSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC---
T ss_pred             CCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence            4200000 00            0124678999875  88888988888876543

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=92.05  E-value=2.6  Score=30.60  Aligned_cols=20  Identities=15%  Similarity=0.230  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHhC-CCc
Q psy788           15 EELRPKREILADALDKA-GMV   34 (126)
Q Consensus        15 ~~~~~r~~~l~~~l~~~-g~~   34 (126)
                      +...++.+.+.+.|.++ ++.
T Consensus       284 ~~~~~~~~~l~~~L~~~~~v~  304 (412)
T 2cb1_A          284 ARMSETARFLAERLQGHPKVK  304 (412)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCS
T ss_pred             HHHHHHHHHHHHHHHcCCCee
Confidence            34456777888888876 565

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=90.33  E-value=2.4  Score=30.70  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=15.3

Q ss_pred             CCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           97 ENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        97 ~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                      ++.+|+|++.  +++.++...+.|.+
T Consensus       365 ~~~iRlS~g~~~~~~~i~~l~~al~~  390 (393)
T 1n8p_A          365 DDLVRISVGIEDTDDLLEDIKQALKQ  390 (393)
T ss_dssp             TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEccCCHHHHHHHHHHHHHH
Confidence            5899999997  33444444444443

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=88.37  E-value=1.4  Score=31.75  Aligned_cols=102  Identities=11%  Similarity=0.045  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-C--cccCCCc--ce--EEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            9 YFYTISEELRPKREILADALDKAG-M--VPVIPDG--GY--FMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g-~--~~~~p~g--g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      ++....++.+++.+.+.+.|.+++ +  .+..+.+  .+  |+.+.++..   .         +..++...| .++||.+
T Consensus       249 ~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~l~~~L-~~~gI~~  315 (377)
T 3ju7_A          249 KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE---V---------RNKQVIEDL-KKQKIEA  315 (377)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT---S---------CHHHHHHHH-HTTTBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh---h---------hHHHHHHHH-HHCCCce
Confidence            344555555666667777777763 3  2322222  22  233444421   0         256787875 5889998


Q ss_pred             eCCCC--cccCcc-c-----------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           82 IPPSA--FYSDEH-K-----------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        82 ~pg~~--f~~~~~-~-----------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      .+++.  ...... .           ....+.+||++..  ++++++..++.|.+++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~  373 (377)
T 3ju7_A          316 RLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVV  373 (377)
T ss_dssp             BCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC---
T ss_pred             ecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHh
Confidence            87651  111000 0           0124678998885  77888888888776553

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=87.44  E-value=3.6  Score=29.99  Aligned_cols=89  Identities=12%  Similarity=-0.026  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCc-ccCC----------------CcceEEEEeeCCcccccccCCCCCchhhHHHHHHH
Q psy788           12 TISEELRPKREILADALDKA-GMV-PVIP----------------DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWM   73 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~-g~~-~~~p----------------~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l   73 (126)
                      ...+...++...+.+.|+++ .+. +..|                ..|.+++++++...   +        ....|...+
T Consensus       266 ~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~---~--------~~~~~~~~l  334 (400)
T 3nmy_A          266 LRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF---D--------AAKRFCEKT  334 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH---H--------HHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH---H--------HHHHHHHcC
Confidence            34455567777888888776 222 2222                24678899997421   0        234555553


Q ss_pred             HHhCCeeEeCCCCcccCc----------c------cCCCCCeEEEEeeC-ChhHHH
Q psy788           74 TKNVKLQGIPPSAFYSDE----------H------KHLGENLIRYCFFK-KDETLR  112 (126)
Q Consensus        74 ~~~~gV~v~pg~~f~~~~----------~------~~~~~~~~Rl~~~~-~~e~i~  112 (126)
                       +-.++.+..|..+..-.          .      ....++.+|+|++. +.+++.
T Consensus       335 -~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli  389 (400)
T 3nmy_A          335 -ELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLR  389 (400)
T ss_dssp             -SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHH
T ss_pred             -CcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHH
Confidence             34445555555433100          0      01246899999998 444443

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=87.23  E-value=5.9  Score=29.67  Aligned_cols=42  Identities=7%  Similarity=0.107  Sum_probs=30.0

Q ss_pred             HHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        68 ~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      .+...|+ ++||.+.|.             +++.++...++++|++.++.|.+++.
T Consensus       403 ~~~~~ll-~~Gv~~~p~-------------~~~~~s~~~T~~dId~~l~al~~~l~  444 (454)
T 4ao9_A          403 LLFFHLL-NEDIYSSPR-------------GFVVLSLPLTDADIDRYVAAIGSFIG  444 (454)
T ss_dssp             HHHHHHH-HTTEECCTT-------------CEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HCCEEEcCC-------------CCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            4666665 789987662             23345555688999999999988875

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=84.80  E-value=3.8  Score=33.10  Aligned_cols=46  Identities=13%  Similarity=0.021  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhhc
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...++..+ .++||.+.|+            .+.+||+  +..++++|++++++|.+++++
T Consensus       780 a~~~~~~l-~e~Gv~v~p~------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~  827 (831)
T 4a0g_A          780 AKSLLIML-REDGIFTRPL------------GNVIYLMCGPCTSPEICRRLLTKLYKRLGE  827 (831)
T ss_dssp             HHHHHHHH-HHTTEECCCB------------TTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH-HHCCcEEEec------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            44677776 4889998873            1478987  445899999999999988763

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=81.99  E-value=5.7  Score=29.11  Aligned_cols=19  Identities=11%  Similarity=-0.029  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHhC
Q psy788           13 ISEELRPKREILADALDKA   31 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~   31 (126)
                      ..+...++...+.+.|.++
T Consensus       282 r~~~~~~n~~~l~~~L~~~  300 (415)
T 2fq6_A          282 RLRQHHESSLKVAEWLAEH  300 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            3445566777888888775

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=81.43  E-value=19  Score=28.72  Aligned_cols=46  Identities=9%  Similarity=0.052  Sum_probs=31.7

Q ss_pred             hhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           65 EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        65 ~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      +..++++.|. ++||.+.+.           +.+.+|++++.  +.++++..++.|.++.
T Consensus       516 ~~~~l~~~L~-e~GI~v~~~-----------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~  563 (730)
T 1c4k_A          516 PATIVANYLR-DHGIIPEKS-----------DLNSILFLMTPAETPAKMNNLITQLLQLQ  563 (730)
T ss_dssp             CHHHHHHHHH-HTTCCCSEE-----------CSSEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HCCcEEEEC-----------CCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            3667888865 668876441           24678888874  7788888777776654

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=81.42  E-value=12  Score=26.70  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=17.5

Q ss_pred             CCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           97 ENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        97 ~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ++++|++++.+  ..++.++.|.++++
T Consensus       363 ~~~iRlsvg~~--~~~~li~~l~~al~  387 (389)
T 3acz_A          363 PELVRISVGIE--NVDDIIADLKQALE  387 (389)
T ss_dssp             TTEEEEECCSS--CHHHHHHHHHHHHT
T ss_pred             cCeEEEEeccC--CHHHHHHHHHHHHh
Confidence            58999999983  34566666666554

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=80.82  E-value=15  Score=27.36  Aligned_cols=68  Identities=16%  Similarity=0.095  Sum_probs=42.8

Q ss_pred             ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHH
Q psy788           41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSIL  118 (126)
Q Consensus        41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l  118 (126)
                      |+++-+++......     ..+......+...++ ++||.+.+...+         .+.+||.=  ..+++++++++++|
T Consensus       384 Gl~~giel~~~~~~-----~~~~~~~~~v~~~~~-~~Gvl~~~~g~~---------~~~irl~PpL~it~~~id~~l~~l  448 (456)
T 4atq_A          384 GAMLAIELVQPGSK-----EPNAELTKAVAAACL-KEGVIILTCGTY---------GNVIRLLPPLVISDELLIDGLEVL  448 (456)
T ss_dssp             TTEEEEEEBCTTSC-----CBCHHHHHHHHHHHH-HTTEECEEECTT---------SCEEEECCCTTCCHHHHHHHHHHH
T ss_pred             ceEEEEEEecCCCC-----CcCHHHHHHHHHHHH-HCCCEEEecCCC---------CCEEEEECCCCCCHHHHHHHHHHH
Confidence            67777887532100     000011345677754 889998764222         35688864  44889999999999


Q ss_pred             HHhhh
Q psy788          119 QTWRN  123 (126)
Q Consensus       119 ~~~~~  123 (126)
                      .++++
T Consensus       449 ~~al~  453 (456)
T 4atq_A          449 AAAIK  453 (456)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	1e-18
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	5e-14
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	7e-09
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	7e-09
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	6e-08
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	7e-08
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	1e-06
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	1e-06
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-05
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-05
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	4e-05
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	3e-04
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	7e-04
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	0.002

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score = 77.9 bits (190), Expect = 1e-18
 Identities = 66/125 (52%), Positives = 89/125 (71%)

Query: 1   MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE 60
                 +CYF +IS EL  KR+ +A  L + GM P +P GGYFMVADW+ L   + L  E
Sbjct: 294 KRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQE 353

Query: 61  SDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120
           +D  +D++F KWMTK+V LQGIPPSAFYS+ +KHLGE+ +RYCFFKKDE L++A+ IL+ 
Sbjct: 354 TDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRK 413

Query: 121 WRNKN 125
           W+  +
Sbjct: 414 WKGSS 418

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 5e-14
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYED 66
            YF    + ++  R+ +  +L   G+ P+IP G YF++ D +   R M  L    D+  D
Sbjct: 301 SYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYD 360

Query: 67  FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
            +F KWM KN  L  IP S FYS  H+   ++ IR+CF K + TL+     L+ W+
Sbjct: 361 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 416

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 50.3 bits (119), Expect = 7e-09
 Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 5   PDKCYFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDK 63
               Y     ++L+ +R+ +   L++   +    P G +++          + +    + 
Sbjct: 289 GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK-------IEVGPWKN- 340

Query: 64  YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
             D +F   +  N  +  +  S F        G    R  F    E L EA    + +
Sbjct: 341 --DKEFVLDVLHNAHVLFVHGSGFGEY-----GAGHFRAVFLPPIEILEEAMDRFEKF 391

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 7e-09
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 13/92 (14%)

Query: 28  LDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87
           L+++ +  +  +G YF++ D++ +  +          +D +F +W+T+   +  IP S F
Sbjct: 302 LNESRLEILPCEGTYFLLVDYSAVSTL----------DDVEFCQWLTQEHGVAAIPLSVF 351

Query: 88  YSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
            +D        LIR CF KK+ TL  A+  L+
Sbjct: 352 CADPF---PHKLIRLCFAKKESTLLAAAERLR 380

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score = 47.3 bits (111), Expect = 6e-08
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 12/115 (10%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
            +    +  L  + +   + L+  G+  +  + G F    W  LRP+LR  T      + 
Sbjct: 320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFC---WMDLRPLLRESTFDS---EM 373

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDE-TLREASSILQTW 121
              + +  +VKL   P S+F             R CF   D+ T+  A + ++ +
Sbjct: 374 SLWRVIINDVKLNVSPGSSFECQ-----EPGWFRVCFANMDDGTVDIALARIRRF 423

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 47.1 bits (111), Expect = 7e-08
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 19/117 (16%)

Query: 6   DKCYFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKY 64
            +     +      +R  + DAL+    +    PDG ++M     +              
Sbjct: 285 SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT-----------GR 333

Query: 65  EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
               F   +    ++  +P +AF +D+        IR  +    +T++     L+ +
Sbjct: 334 SSLDFCSELLDQHQVATVPGAAFGADDC-------IRLSYATDLDTIKRGMERLEKF 383

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 44.1 bits (102), Expect = 1e-06
 Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 14/118 (11%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
                +++       +     +  G+ P +P G  ++++        + L+   D   D 
Sbjct: 307 HLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSR-------IDLEKYRDIKTDV 359

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
           +F + + +   +Q +P + F+            R    +  E  REA   ++ +  ++
Sbjct: 360 EFFEKLLEEENVQVLPGTIFH-------APGFTRLTTTRPVEVYREAVERIKAFCQRH 410

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 6   DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYE 65
            K Y     + L+ +++ L   L K+G+  +  + G F    W  +R +LR +T      
Sbjct: 321 TKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFC---WVDMRHLLRSNTFEA--- 374

Query: 66  DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDE-TLREASSILQTW 121
           + +  K +   V L   P S+ +            R CF    E TL  A   L+ +
Sbjct: 375 EMELWKKIVYEVHLNISPGSSCHCT-----EPGWFRVCFANLPERTLDLAMQRLKAF 426

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 16/121 (13%)

Query: 1   MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE 60
           +           + +E   +R+++   L++ G+  V P G +++                
Sbjct: 277 LKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDT--------- 327

Query: 61  SDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120
                  KF++ M K  ++  +P SAF        GE  +R  +    E L EA   ++ 
Sbjct: 328 --GLTSKKFSELMLKEARVAVVPGSAFGKA-----GEGYVRISYATAYEKLEEAMDRMER 380

Query: 121 W 121
            
Sbjct: 381 V 381

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 1   MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE 60
                 +     + +  + ++  + + L K G+  V P+G +++   + ++R        
Sbjct: 273 AALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYL---FFKVRG------- 322

Query: 61  SDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120
               +D KF + + +  K+  +P SAF            +R  F    E L EA   ++ 
Sbjct: 323 ----DDVKFCERLLEEKKVALVPGSAFL-------KPGFVRLSFATSIERLTEALDRIED 371

Query: 121 W 121
           +
Sbjct: 372 F 372

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 19/107 (17%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
            +     E  R +R++L + L   G+  V P G ++++ D + + P           ++ 
Sbjct: 287 AFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAP-----------DEV 335

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
           + A+ + +   +  +P + F +  H       +R  +   +E LR+A
Sbjct: 336 RAAERLLEA-GVAVVPGTDFAAFGH-------VRLSYATSEENLRKA 374

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.6 bits (83), Expect = 3e-04
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 8   CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
            ++  + E  R +R++LA  L   G+   +P+G YF++A+                    
Sbjct: 274 GFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWD--------------- 318

Query: 68  KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSIL 118
             A  + +  ++  IP SAFY ++     ++L R+ F K +E L  A   L
Sbjct: 319 --AFRLVEEARVALIPASAFYLEDP---PKDLFRFAFCKTEEELHLALERL 364

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.6 bits (80), Expect = 7e-04
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 32  GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG-----IPPSA 86
                 P G +++            L  E  +    +FA+WM  +  + G      P   
Sbjct: 304 LKRFTKPSGAFYI---------TAELPVEDAE----EFARWMLTDFNMDGETTMVAPLRG 350

Query: 87  FYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
           FY      LG+  IR     + + L  A  +L   
Sbjct: 351 FYLTPG--LGKKEIRIACVLEKDLLSRAIDVLMEG 383

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 16/89 (17%)

Query: 33  MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH 92
           +   + +G Y    D+  L           K +     ++M    ++       F     
Sbjct: 317 IKAPLIEGTYLQWIDFRAL-----------KMDHKAMEEFMIHKAQIFFDEGYIFGDG-- 363

Query: 93  KHLGENLIRYCFFKKDETLREASSILQTW 121
              G    R         ++E+   L   
Sbjct: 364 ---GIGFERINLAAPSSVIQESLERLNKA 389

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.85
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.84
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.82
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.82
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.81
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.81
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.8
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.8
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.8
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.78
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.77
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.77
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.76
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.74
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.74
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.73
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.7
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.43
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.4
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.28
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.25
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.22
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.2
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.15
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.13
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.06
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	98.97
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.91
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	97.9
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	97.72
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	97.71
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	97.5
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	97.49
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	97.39
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	97.32
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	97.22
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	96.99
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	96.89
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	96.68
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	96.39
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	96.18
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	95.8
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	95.61
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	95.01
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	94.91
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	94.25
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	94.21
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	94.04
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	94.03
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	93.35
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	92.49
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	92.33
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	91.91
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	91.51
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	91.24
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	90.37
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	90.1
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	89.2
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	87.71
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	84.05
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	83.7
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	83.01
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	82.41
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	82.37

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.85  E-value=1.2e-21  Score=143.93  Aligned_cols=121  Identities=55%  Similarity=1.069  Sum_probs=96.6

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +...++|++++++.|+.+|+.+.+.|++.|+++..|+||||+|++++......+.....+..++.+|+.+|++++||.++
T Consensus       296 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~  375 (418)
T d2r5ea1         296 LKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGI  375 (418)
T ss_dssp             TTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECB
T ss_pred             cccchhhHHHHHHHHHHhhhhHHhhHhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEe
Confidence            45567899999999999999999999999999999999999999997532111000111223578999999989999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ||+.|+.+.....+++|+|+||+.+++.|++|+++|++++.
T Consensus       376 PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         376 PPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             CGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             CchhhCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHHc
Confidence            99999865321124689999999888999999999999875

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.3e-21  Score=142.23  Aligned_cols=104  Identities=31%  Similarity=0.611  Sum_probs=90.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ..+++|+..+++.|+++|+.+.+.+...|+++..|+||||+|++++.... .         ++.+|+++|+++.||.++|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~~~~~~~~-~---------d~~e~~~~ll~e~gV~v~P  347 (382)
T d1u08a_         278 RAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVST-L---------DDVEFCQWLTQEHGVAAIP  347 (382)
T ss_dssp             HHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCC-S---------CHHHHHHHHHHHSCEECEE
T ss_pred             ccchHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEEEEecCCCCC-C---------CHHHHHHHHHHHCCEEEEc
Confidence            34568999999999999999999987778999999999999999986421 1         5788999998899999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                      |+.|+.+.   .+.+|+||||+.++|+|++|++||++
T Consensus       348 G~~F~~~~---~~~~~~Ris~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         348 LSVFCADP---FPHKLIRLCFAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             GGGGCSSC---CCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             chhhCCCC---CCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence            99998753   35789999999889999999999975

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.82  E-value=1e-20  Score=138.26  Aligned_cols=106  Identities=18%  Similarity=0.258  Sum_probs=92.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            4 APDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..+++|++++++.|++|++.+.+.|+++ ++.+..|+||||+|++++....          .++.+++..++++.||.+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~----------~~~~~~~~~ll~~~gV~v~  357 (395)
T d1xi9a_         288 TGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW----------KNDKEFVLDVLHNAHVLFV  357 (395)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC----------SSHHHHHHHHHHHHCEECE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCC----------CCHHHHHHHHHHhCCEEEE
Confidence            4567899999999999999999999988 4788999999999999985321          1477888998889999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+..     +++|+||+|+.+++.+++|++||.+++++
T Consensus       358 PG~~Fg~~-----~~~~~Ris~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         358 HGSGFGEY-----GAGHFRAVFLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             EGGGGCGG-----GTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             cChhhCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            99999864     47899999998899999999999999874

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.82  E-value=4e-20  Score=135.38  Aligned_cols=108  Identities=16%  Similarity=0.290  Sum_probs=92.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            4 APDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .+.++|+..+++.|+++|+.+.+.|.+. |+.+..|+||||+|++++....       .+..++.+|+++|+.++||.++
T Consensus       302 ~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~-------~~~~~~~~~~~~ll~~~gV~v~  374 (412)
T d1bw0a_         302 NTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY-------RDIKTDVEFFEKLLEEENVQVL  374 (412)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGB-------SSCCSHHHHHHHHHHHHCEECE
T ss_pred             cccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhc-------CCCCCHHHHHHHHHHhCCEEEE
Confidence            4567899999999999999999999876 8999999999999999974321       0012577899999988999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN  125 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~  125 (126)
                      ||+.|+.       ++|+||||+.+++.+++|++||+++++|.
T Consensus       375 PG~~Fg~-------~g~iRis~~~~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         375 PGTIFHA-------PGFTRLTTTRPVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             EGGGGTC-------TTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             eccccCC-------CCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            9999973       67999999999999999999999998864

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.81  E-value=1.5e-19  Score=133.19  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=91.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ++|+.++++.|+++++.+.+.|++.|+++.+|+||||+|++++....      .....++.+++++|+.+.||.+.||+.
T Consensus       322 ~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~------~~~~~~~~~l~~~ll~~~gV~v~PG~~  395 (431)
T d1m7ya_         322 KNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLR------SNTFEAEMELWKKIVYEVHLNISPGSS  395 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSS------SSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccc------cCcccCHHHHHHHHHHHCCEEEEeccc
Confidence            56999999999999999999999889999999999999999986421      011124668999999899999999999


Q ss_pred             cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      |+..     .++|+|++|+. +++.+++|++||++++++
T Consensus       396 F~~~-----~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         396 CHCT-----EPGWFRVCFANLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             GTCS-----STTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----CCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence            9875     47899999997 778899999999999875

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.3e-20  Score=135.17  Aligned_cols=118  Identities=31%  Similarity=0.642  Sum_probs=93.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCccccccc-CCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRL-DTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      +..+|+..+++.|+++|+.+.+.|.+.|+++..|+||||+|++++........ ....+..++.+++++|++++||.|+|
T Consensus       298 ~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~P  377 (418)
T d1w7la_         298 QPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP  377 (418)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEE
T ss_pred             ccccccccchhhhhhhhhhhhhhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEc
Confidence            44679999999999999999999998899999999999999999753210000 11112234778999999999999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      |+.|+....+..+++|+||||+.+++.+++++++|+++.
T Consensus       378 G~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         378 VSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             GGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred             chhhcCCCccCCCCCEEEEEEcCCHHHHHHHHHHHHHHh
Confidence            999986432224578999999988999999999998764

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.80  E-value=2.9e-19  Score=131.64  Aligned_cols=106  Identities=19%  Similarity=0.285  Sum_probs=89.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|++.+++.|+++++.+.+.|+..|+++..|+||||+|++++.....      ....++.++++.|++++||.+.||+.
T Consensus       319 ~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~------~~~~~~~~l~~~Ll~~~gV~v~PG~~  392 (428)
T d1iaya_         319 DNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRE------STFDSEMSLWRVIINDVKLNVSPGSS  392 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSS------SSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred             cccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECcccccc------CCCCCHHHHHHHHHHhCCEEEEcchh
Confidence            568899999999999999999988899999999999999999853210      11124567899999889999999999


Q ss_pred             cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      |+..     +++|+|++|+. ++++|++|++||++++.
T Consensus       393 F~~~-----~~g~~Ris~a~~~~~~l~~al~Rl~~~l~  425 (428)
T d1iaya_         393 FECQ-----EPGWFRVCFANMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             GTCS-----SSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----CCCEEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            9875     47999999986 77789999999999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.80  E-value=6.9e-20  Score=133.49  Aligned_cols=103  Identities=17%  Similarity=0.335  Sum_probs=91.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            4 APDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .+.++|++++++.|+++++.+.+.|.++ |+.+..|+||||+|++++....           ++.+++.+|+.++||.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~~~-----------~~~~~~~~ll~~~gV~v~  351 (388)
T d1j32a_         283 ENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGR-----------SSLDFCSELLDQHQVATV  351 (388)
T ss_dssp             HSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTC-----------CHHHHHHHHHHHHCEECE
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCCCC-----------CHHHHHHHHHHhCCEEEE
Confidence            3456899999999999999999999988 8999999999999999986431           477899998888999999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+.       ++|+|++|+.+.+.+++|++||.++++.
T Consensus       352 pG~~F~~-------~~~~Rls~~~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         352 PGAAFGA-------DDCIRLSYATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             EGGGGTC-------TTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             eccccCC-------CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            9999973       5799999999899999999999998874

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.80  E-value=1.5e-19  Score=131.70  Aligned_cols=103  Identities=12%  Similarity=0.161  Sum_probs=90.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA--GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      .+.|++.+++.++++++.+.+.++..  ++++..|+||||+|++++..+  .         ++.+|+++|+++.||.+.|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~--~---------~~~~~~~~Ll~~~gV~v~p  356 (394)
T d1c7na_         288 CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK--M---------DHKAMEEFMIHKAQIFFDE  356 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC--C---------CHHHHHHHHHHTTCCCCEE
T ss_pred             hhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCC--C---------CHHHHHHHHHHhCCEEEEc
Confidence            46799999999999999999999875  688899999999999998643  1         4788999998888999999


Q ss_pred             CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+.|+..     +++|+||||+.+++.|++|++||.+++++
T Consensus       357 G~~Fg~~-----~~~~iRis~~~~~e~i~eal~rl~~~l~~  392 (394)
T d1c7na_         357 GYIFGDG-----GIGFERINLAAPSSVIQESLERLNKALKD  392 (394)
T ss_dssp             GGGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCC-----CCCEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            9999864     57899999998889999999999998874

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=8.8e-19  Score=125.99  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=90.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            5 PDKCYFYTISEELRPKREILADALDKA--GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..+.|.+.++..+++|++.+.+.+.+.  ++.+..|+||||+|++++...  .         ++.+|+.+|+++.||.|.
T Consensus       254 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~--~---------~~~~~~~~Ll~~~gv~v~  322 (361)
T d1d2fa_         254 QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN--I---------DDNALQKALIEQEKVAIM  322 (361)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC--C---------CHHHHHHHHHHTTCEECE
T ss_pred             ccchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCC--C---------CHHHHHHHHHHhCCEEEE
Confidence            346789999999999999999888765  688899999999999997532  2         478999999888899999


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+.|+..     +++|+|+||+.+++.+++|+++|.+++++
T Consensus       323 pG~~F~~~-----~~~~vRis~~~~~e~l~~al~rl~~~l~~  359 (361)
T d1d2fa_         323 PGYTYGEE-----GRGFVRLNAGCPRSKLEKGVAGLINAIRA  359 (361)
T ss_dssp             EGGGGCGG-----GTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             eccccCCC-----CCCEEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            99999864     57899999998889999999999999875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=8.2e-19  Score=127.15  Aligned_cols=102  Identities=23%  Similarity=0.367  Sum_probs=90.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      ..++..+++.|++++..+.+.|.+.++.+..|+||||+|++++...  .         ++.+|++.|+++.||.+.||+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl~~~l~~~~--~---------~~~~~~~~ll~e~gV~v~PG~~  351 (388)
T d1gdea_         283 WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTG--L---------TSKKFSELMLKEARVAVVPGSA  351 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECCBCGGGT--C---------CHHHHHHHHHHHTCEECEEGGG
T ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEEEEEECCCCC--C---------CHHHHHHHHHHhCCEEEEechh
Confidence            4578899999999999999999988888999999999999998643  1         4778999988899999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      |+..     +++|+|+||+.+.+++++|+++|.+++++
T Consensus       352 F~~~-----~~~~iRis~~~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         352 FGKA-----GEGYVRISYATAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             GCGG-----GTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             hCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            9864     47899999998889999999999999874

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=8.6e-19  Score=126.62  Aligned_cols=96  Identities=22%  Similarity=0.404  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +.|....++.|+++++.+.+.|++.|+++..|+||||+|++++.              ++.+++.+++.++||.+.||+.
T Consensus       279 ~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~~~--------------~~~~~~~~ll~~~gV~v~pG~~  344 (375)
T d1o4sa_         279 EVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG--------------DDVKFCERLLEEKKVALVPGSA  344 (375)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECSS--------------CHHHHHHHHHHHHCEECEEGGG
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHhcCceEecCCccEEEEEECCC--------------CHHHHHHHHHHhCCEEEEEccc
Confidence            45677889999999999999999989999999999999999985              3667888888889999999999


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |+.       ++|+|++|+.+++.+++|++||.++++
T Consensus       345 F~~-------~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         345 FLK-------PGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             GTC-------TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             cCC-------CCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            973       579999999999999999999999876

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2.7e-18  Score=124.48  Aligned_cols=107  Identities=22%  Similarity=0.371  Sum_probs=91.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHh-----
Q psy788            3 TAPDKCYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKN-----   76 (126)
Q Consensus         3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----   76 (126)
                      +..++.|++.+++.|+++|+.+.+.|.++| ..+..|+||||+|++++..             ++.+|++.|+.+     
T Consensus       274 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~-------------~~~~~~~~ll~e~~l~~  340 (389)
T d2gb3a1         274 LNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVE-------------DAEEFARWMLTDFNMDG  340 (389)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSS-------------CHHHHHHHHHHSCCBTT
T ss_pred             ccccchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCC-------------CHHHHHHHHHHhhhhhh
Confidence            455778999999999999999999999985 5678999999999999853             477899988755     


Q ss_pred             CCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           77 VKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        77 ~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      .||.+.||+.|+.+.  +.+++|+||+|+.+++++++|+++|.+.+++
T Consensus       341 ~~v~v~pg~~f~~~~--~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~  386 (389)
T d2gb3a1         341 ETTMVAPLRGFYLTP--GLGKKEIRIACVLEKDLLSRAIDVLMEGLKM  386 (389)
T ss_dssp             EEEECEEGGGGCSST--TTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcccccCC--CCCCCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            588999999998752  1357899999998999999999999998874

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=6.9e-18  Score=121.55  Aligned_cols=97  Identities=28%  Similarity=0.565  Sum_probs=84.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ...|++.+++.|+++++.+.+.|+++|+++..|+||||+|++++..             +..+    ++.++||.+.||+
T Consensus       272 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~-------------~~~~----ll~~~gI~v~pg~  334 (368)
T d1v2da_         272 REGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW-------------DAFR----LVEEARVALIPAS  334 (368)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTC-------------CHHH----HHHHTCEECEEGG
T ss_pred             chhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCcc-------------HHHH----HHHhCCEEEEech
Confidence            4569999999999999999999999999999999999999999852             2333    4568999999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      .|+.++   .+++|+|+||+.++|++++|+++|++++
T Consensus       335 ~F~~~~---~~~~~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         335 AFYLED---PPKDLFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             GGCSSS---CCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             hhCCCC---CCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence            998653   3679999999988899999999999864

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=3.8e-18  Score=125.01  Aligned_cols=102  Identities=21%  Similarity=0.239  Sum_probs=86.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ   80 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~   80 (126)
                      ..+|++++++.|+++++.+.+.|.+.     |+++..|+||||+|++++..   .         ++.++++.| .++||.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~---~---------d~~~~~~~l-~~~gV~  370 (420)
T d1vp4a_         304 LLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG---F---------DTWEMFEYA-KRKKVF  370 (420)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTT---C---------CTTTTHHHH-HHHTEE
T ss_pred             ccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCC---C---------CHHHHHHHH-HHCCeE
Confidence            35688899999999999999999874     68899999999999999863   2         355677764 688999


Q ss_pred             EeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           81 GIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        81 v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      +.||+.|+..+   ...+|+|+||+. +++++++|++||.++++
T Consensus       371 v~PG~~F~~~~---~~~~~iRls~~~~~~e~l~~a~~rL~~~l~  411 (420)
T d1vp4a_         371 YVPGRVFKVYD---EPSPSMRLSFCLPPDEKIVEGIKRLREVVL  411 (420)
T ss_dssp             CEEGGGGCTTC---CCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             EEechhhCCCC---CCCCEEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence            99999998653   257899999986 78899999999999886

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=7.1e-18  Score=122.27  Aligned_cols=98  Identities=18%  Similarity=0.385  Sum_probs=84.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      .+.|+..+++.|+++++.+.+.+.+.|+++..|+||||+|++++...  .         ++..+.+.| .++||.+.||+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~~~~~~~~~~~--~---------~~~~~~~~l-~e~gV~v~PG~  352 (382)
T d1b5pa_         285 SRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIA--P---------DEVRAAERL-LEAGVAVVPGT  352 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTC--S---------SHHHHHHHH-HHTTEECEESG
T ss_pred             hhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceEEEeEeCCCCC--C---------CHHHHHHHH-HHCCEEEEeCc
Confidence            45688899999999999999999888999999999999999997542  1         356677765 58899999999


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      .|+.       ++|+|++|+.+++.|++|++||.+++
T Consensus       353 ~F~~-------~~~iRis~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         353 DFAA-------FGHVRLSYATSEENLRKALERFARVL  382 (382)
T ss_dssp             GGTC-------TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred             ccCC-------CCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence            9973       57999999998999999999998764

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.70  E-value=3e-17  Score=119.41  Aligned_cols=104  Identities=21%  Similarity=0.274  Sum_probs=88.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788            5 PDKCYFYTISEELRPKREILADALDKA---GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG   81 (126)
Q Consensus         5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v   81 (126)
                      ..+.|++++++.|.++++.+.+.|.+.   ++.+..|+||||+|+++++.   .         ++..+++.| .++||.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~---~---------~~~~~~~~l-~~~gV~v  357 (403)
T d1wsta1         291 YLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEG---I---------DTKLMMERA-VAKGVAY  357 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTT---C---------CTTTTHHHH-HHTTEEC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCC---C---------CHHHHHHHH-HHCCEEE
Confidence            356789999999999999999999875   68899999999999999874   2         355677765 5889999


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      +||+.|+...   .+++|+||+|+. +++++++|+++|.+++++
T Consensus       358 ~pg~~f~~~~---~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         358 VPGEAFFVHR---DKKNTMRLNFTYVPEETIREGVRRLAETIKE  398 (403)
T ss_dssp             EEGGGGSTTC---CCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             EechhhcCCC---CCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            9999998753   357899999996 889999999999999874

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.43  E-value=5e-13  Score=95.40  Aligned_cols=95  Identities=11%  Similarity=0.082  Sum_probs=76.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP   84 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg   84 (126)
                      +..|++..++.|+++++.+.+.|.+. ++++ .|.+|+|+|++++.              ++.++++.|+ ++||.|.||
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~p~~~~f~~~~~~~--------------~~~~~~~~L~-~~gv~vr~~  323 (355)
T d1lc5a_         260 DSAWQQATWHWLREEGARFYQALCQLPLLTV-YPGRANYLLLRCER--------------EDIDLQRRLL-TQRILIRSC  323 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE-CCCSSSEEEEEESC--------------TTCCHHHHHH-TTTEECEEC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhcCCcEE-CCCCCEEEEEECCC--------------CHHHHHHHHH-HCCcEEEeC
Confidence            45689999999999999999999987 5665 57788999999975              2456778765 889999999


Q ss_pred             CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788           85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR  122 (126)
Q Consensus        85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~  122 (126)
                      +.|+..     .++|+||+++. +++++..++.|++++
T Consensus       324 ~~f~~~-----~~~~iRis~~~-~~e~~~li~aL~~il  355 (355)
T d1lc5a_         324 ANYPGL-----DSRYYRVAIRS-AAQNERLLAALRNVL  355 (355)
T ss_dssp             TTSTTC-----CTTEEEEECCC-HHHHHHHHHHHHHHC
T ss_pred             ccCCCC-----CCCEEEEEeCC-HHHHHHHHHHHHHhC
Confidence            999753     47899999975 566677788777653

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.40  E-value=7.1e-13  Score=97.48  Aligned_cols=98  Identities=11%  Similarity=0.057  Sum_probs=76.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCC-Ccc--------------cCCCcceEEEEeeCCcccccccCCCCCchhhHHHH
Q psy788            6 DKCYFYTISEELRPKREILADALDKAG-MVP--------------VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFA   70 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~--------------~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
                      ..+++...++.+++|++.+.+.|.+.+ +.+              ..|.++.|+|+++...              +.+++
T Consensus       311 ~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~--------------~~~~~  376 (425)
T d2hoxa1         311 MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--------------EDKDC  376 (425)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--------------GGCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC--------------hHHHH
Confidence            346888899999999999999998763 222              2234445788887642              22334


Q ss_pred             HHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788           71 KWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN  123 (126)
Q Consensus        71 ~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~  123 (126)
                      ..++.++||.+.||+.|+.      +++|+||||+.++|.++++++||.++++
T Consensus       377 ~~lL~e~gI~v~pGs~FG~------~~~yvRisl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         377 YQTFQNGRINTQNGVGFEA------SSRYVRLSLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             HHHHHHTTEECEEGGGGTS------CTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCEEEEechhcCC------CCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            4567899999999999974      3689999999999999999999999876

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.28  E-value=4e-12  Score=92.16  Aligned_cols=85  Identities=12%  Similarity=0.091  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..+++.+++.|+++|+.+.+.|++++    +.+..|+||||+|+.++                 .+++++|+++.||.++
T Consensus       312 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------------~e~~~~L~~e~gV~~~  374 (401)
T d7aata_         312 LVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMT  374 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC-----------------HHHHHHHHHhCCEEEC
Confidence            46788999999999999999999873    56788999999997543                 2457788889999998


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN  123 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~  123 (126)
                      ||               .||||+. +++.|+..+++|.+++|
T Consensus       375 pg---------------~Ris~a~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         375 KD---------------GRISVAGVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             TT---------------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             CC---------------cEEEeccCCHHHHHHHHHHHHHHhC
Confidence            86               2999986 88888888888877654

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=2.2e-11  Score=86.29  Aligned_cols=87  Identities=15%  Similarity=0.085  Sum_probs=69.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788            6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus         6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +.+|++.+++.|+++|+.+.+.|+++|+++.+|+|+ |+|++++..             ++.++++.|+ ++||.|.+  
T Consensus       247 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~-f~~~~~~~~-------------~~~~~~~~L~-~~GI~vr~--  309 (334)
T d2f8ja1         247 HREIFEERTKFIVEERERMKSALREMGYRITDSRGN-FVFVFMEKE-------------EKERLLEHLR-TKNVAVRS--  309 (334)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCSS-EEEEECCHH-------------HHHHHHHHHH-HTTEECEE--
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHCCCeECCCCce-EEEEECCCC-------------CHHHHHHHHH-HCCCEECC--
Confidence            457899999999999999999999999999888887 789988752             4678888875 78998853  


Q ss_pred             CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788           86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQT  120 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~  120 (126)
                                .++|+|+||+. .+++++.++.|++
T Consensus       310 ----------~~~~vRis~g~-~ee~~~l~~~l~~  333 (334)
T d2f8ja1         310 ----------FREGVRITIGK-REENDMILRELEV  333 (334)
T ss_dssp             ----------ETTEEEEECCC-HHHHHHHHHHHHH
T ss_pred             ----------CCCeEEEEcCC-HHHHHHHHHHHhc
Confidence                      24799999986 3445777777654

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=7.1e-11  Score=84.11  Aligned_cols=89  Identities=13%  Similarity=0.062  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            8 CYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         8 ~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .++....+.+.++|+.+.+.+.+.+ +....|.||+|+|++++.               +.++++.|+ ++||.|.|++.
T Consensus       261 ~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~---------------~~~~~~~L~-~~gIlvr~~~~  324 (354)
T d1fg7a_         261 VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKA---------------SSAVFKSLW-DQGIILRDQNK  324 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETT---------------HHHHHHHHH-HTTEECEECTT
T ss_pred             ccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCC---------------HHHHHHHHH-HCCcEEecCCC
Confidence            4566777888899999999998884 556678999999999863               557888865 78999999998


Q ss_pred             cccCcccCCCCCeEEEEeeCChhHHHHHHHHHH
Q psy788           87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQ  119 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~  119 (126)
                      |+.      .++|+|+++++ +++++..++.|+
T Consensus       325 ~~~------~~~~lRisigt-~ee~~~~l~aLk  350 (354)
T d1fg7a_         325 QPS------LSGCLRITVGT-REESQRVIDALR  350 (354)
T ss_dssp             STT------CTTEEEEECCC-HHHHHHHHHHHH
T ss_pred             CCC------CCCEEEEEeCC-HHHHHHHHHHHh
Confidence            863      46899999986 444566666664

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.20  E-value=2.3e-11  Score=88.40  Aligned_cols=86  Identities=13%  Similarity=0.153  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +++++.+++.|+++|+.+.+.|++++    +.+..|+||||+|+.++                 .+++.+|++++||.++
T Consensus       320 ~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls-----------------~~~v~~L~~e~gV~~v  382 (412)
T d1ajsa_         320 TGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLL  382 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCC-----------------HHHHHHHHHhCCEEEe
Confidence            46788999999999999999999873    56678999999996442                 2455678889999998


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+               ||||+. +++.++.++++|.+++++
T Consensus       383 pg~---------------Ri~~ag~~~~~i~~~a~aI~~av~~  410 (412)
T d1ajsa_         383 PSG---------------RINMCGLTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             TTS---------------EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             CCC---------------eEEeccCCHHHHHHHHHHHHHHHHh
Confidence            863               999985 888899999999988875

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.15  E-value=3.4e-11  Score=87.58  Aligned_cols=86  Identities=15%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      ..|++.++..|+++|+.+.+.|.++|    +.+..|+||||+|+.++                 .+++++|+.+.||.++
T Consensus       320 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls-----------------~e~~~~L~~e~~V~~~  382 (412)
T d1yaaa_         320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-----------------PQMVKRLEETHAVYLV  382 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcC-----------------HHHHHHHHHhCCEEEC
Confidence            46789999999999999999998873    66789999999997543                 2467888889999888


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      ||+               ||||+. +++.++...+.|.+++++
T Consensus       383 ~g~---------------Ris~~g~~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         383 ASG---------------RASIAGLNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             TTS---------------EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             CCC---------------EEEeccCCHHHHHHHHHHHHHHHHh
Confidence            752               899985 777777777777776653

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.5e-11  Score=87.71  Aligned_cols=83  Identities=10%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +++++.+++.|+++|+.+.+.|++++    +.+..|+||||.|+.++                 .+++.+|+.+.||.++
T Consensus       308 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~-----------------~e~~~~L~~e~gV~~~  370 (396)
T d2q7wa1         308 EQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-----------------KEQVLRLREEFGVYAV  370 (396)
T ss_dssp             HHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC-----------------HHHHHHHHHhCCEEEC
Confidence            57899999999999999999999874    56678899999997553                 2456788889999988


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                      ||+               ||||+. +++.|+..+++|.++
T Consensus       371 ~g~---------------Ri~~a~l~~~~i~~~~~ai~~v  395 (396)
T d2q7wa1         371 ASG---------------RVNVAGMTPDNMAPLCEAIVAV  395 (396)
T ss_dssp             TTC---------------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CCC---------------EEEecCCCHHHHHHHHHHHHHh
Confidence            853               999986 778888888887765

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=1.5e-10  Score=83.37  Aligned_cols=82  Identities=17%  Similarity=0.103  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      +++++.++++|+++|+.+.+.|++++    +.+..|+||||+|+.++                 .+++++|+.+.||.++
T Consensus       305 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------------~~~~~~L~~~~~V~~~  367 (394)
T d2ay1a_         305 MAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT-----------------PEQVKRIKEEFGIYMV  367 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC-----------------HHHHHHHHHhCCEEec
Confidence            46788999999999999999998862    67789999999998553                 2456788889999998


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHH
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQT  120 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~  120 (126)
                      ||+               ||||+. +++.++..++.|.+
T Consensus       368 ~g~---------------Ri~~a~l~~~~i~~l~~ai~~  391 (394)
T d2ay1a_         368 GDS---------------RINIAGLNDNTIPILARAIIE  391 (394)
T ss_dssp             TTC---------------EEEGGGCCTTTHHHHHHHHHH
T ss_pred             CCC---------------EEEecCCCHHHHHHHHHHHHH
Confidence            852               999986 77777666665554

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1e-10  Score=84.49  Aligned_cols=83  Identities=10%  Similarity=0.148  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788            7 KCYFYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI   82 (126)
Q Consensus         7 ~~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~   82 (126)
                      .++++.++++|+++|+.+.+.|.++    ++.+..|+||||+|+.++                 .+++.+|+.+.||.++
T Consensus       309 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------------~e~~~~L~~e~~V~l~  371 (397)
T d3tata_         309 LAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-----------------AAQVDRLREEFGVYLI  371 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC-----------------HHHHHHHTTTTCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC-----------------HHHHHHHHHhCCEEeC
Confidence            4678889999999999999999876    267789999999998654                 2456778888999998


Q ss_pred             CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788           83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW  121 (126)
Q Consensus        83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~  121 (126)
                      ||+               ||||+. +++.++..+++|.++
T Consensus       372 ~g~---------------Ri~~a~~~~~~i~~~~~ai~~v  396 (397)
T d3tata_         372 ASG---------------RMCVAGLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             SSS---------------CCBTTSCCTTTHHHHHHHHHHH
T ss_pred             CCC---------------EEEeccCCHHHHHHHHHHHHHh
Confidence            863               788876 777788777777654

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=3.7e-05  Score=52.28  Aligned_cols=85  Identities=16%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCC
Q psy788           17 LRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHL   95 (126)
Q Consensus        17 ~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~   95 (126)
                      +.++...+.+.+.+. +.....|.++.++|++++...  .         +..+|++.| .++||.+.|.           
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~---------~a~~l~~~L-~~~Gi~v~~~-----------  310 (343)
T d1m6sa_         254 DHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK--V---------NAHGFIEAL-RNSGVLANAV-----------  310 (343)
T ss_dssp             HHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS--S---------CHHHHHHHH-HHHTEECEEE-----------
T ss_pred             HHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCc--c---------cHHHHHHHH-HHCCCEEecC-----------
Confidence            444445555555554 344455667789999987542  1         367888886 5889998762           


Q ss_pred             CCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           96 GENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        96 ~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      +++++|++++.  ++|+|+..++.|.+++++
T Consensus       311 ~~~~iRi~~~~~~t~edid~~v~~l~~v~~~  341 (343)
T d1m6sa_         311 SDTEIRLVTHKDVSRNDIEEALNIFEKLFRK  341 (343)
T ss_dssp             ETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            24689998874  789999999999998874

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.90  E-value=1.2e-05  Score=56.98  Aligned_cols=58  Identities=9%  Similarity=-0.014  Sum_probs=42.2

Q ss_pred             cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC
Q psy788           36 VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK  106 (126)
Q Consensus        36 ~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~  106 (126)
                      ..+.+++|+|........ ..      ..++.+++..|+++.||.++||..|..      +++++||+|+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~-~~------~~~~~~~a~~Ll~~~gV~~ip~~~~p~------~~~~lRis~~~  341 (366)
T d2aeua1         284 YERTPTGFVIKRVYKDDT-IN------IKKLIEIGFNLLKNYGIITITVAGMPG------ASKSLRIDLTS  341 (366)
T ss_dssp             EEECSSEEEEEEEESSHH-HH------HHHHHHHHHHHHHHHCEECSTTSSSCS------SCCSEEEETTS
T ss_pred             cccCccchhccCCCccee-ec------ccCHHHHHHHHHHhCCEEEEECCCCCC------CCCEEEEeccc
Confidence            456778888887764311 00      013567999999999999999998843      46789999996

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=97.72  E-value=0.00021  Score=48.20  Aligned_cols=85  Identities=9%  Similarity=0.105  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788           10 FYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY   88 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~   88 (126)
                      ..........+...+.+.+.++ ++.+..|.++.+++++++.                 ++++.|+ ++|+.|.++. + 
T Consensus       257 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~-----------------~~~~~L~-~~gi~v~~~~-~-  316 (345)
T d1v72a1         257 WLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS-----------------AMIDALL-KAGFGFYHDR-W-  316 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH-----------------HHHHHHH-HTTCBCBCSS-S-
T ss_pred             hhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcCH-----------------HHHHHHH-HcCCCccccC-C-
Confidence            3445555556666777778777 6878778778788887752                 2445654 7788875432 1 


Q ss_pred             cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           89 SDEHKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        89 ~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                             +++.+||+++.  ++|+|+..++.|+++
T Consensus       317 -------~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         317 -------GPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             -------STTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             -------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                   36799999984  788899999888753

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=97.71  E-value=6.2e-05  Score=50.34  Aligned_cols=86  Identities=13%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      .....+....++..+.+.|...|+.+..|.++.++++.++.                 +.+..|.++..+...+..   .
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~~-----------------~~~~~l~~~~~~~~~~~~---~  311 (340)
T d1svva_         252 FFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILEN-----------------TMIAELNNDFDMYTVEPL---K  311 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEEH-----------------HHHHHHTTTEECEEEEEE---T
T ss_pred             HHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCCH-----------------HHHHHHHHhhhhhccccc---C
Confidence            34456677788888889998889998777777788887753                 233444433222222211   1


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                           .+++++|++++.  ++++|+..++.|++
T Consensus       312 -----~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         312 -----DGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             -----TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             -----CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence                 246899998773  88999999988875

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=97.50  E-value=0.00095  Score=46.28  Aligned_cols=95  Identities=8%  Similarity=-0.014  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc-CCC--cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPV-IPD--GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~--gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      +..+++.++++.+.+.+.+...++... .|.  ....+.+.+++.   +         +..++...|..+.||.+..|..
T Consensus       277 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~---~---------~~~~l~~~L~~~~gI~v~~G~~  344 (377)
T d1vjoa_         277 LANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDG---V---------DGKAVARRLLNEHNIEVGGGLG  344 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTT---C---------CHHHHHHHHHHHHCEECEECCG
T ss_pred             chHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCC---C---------CHHHHHHHHHhcCCEEEecCcc
Confidence            456677788888888888887654432 221  223444556542   2         3678888888888999998864


Q ss_pred             cccCcccCCCCCeEEEE-eeC--ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYC-FFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~-~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ..       ..+.||+| ++.  +.|+++..++.|.++++
T Consensus       345 ~~-------~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         345 EL-------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             GG-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             cc-------cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            32       34689998 563  67789999998888764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00078  Score=48.06  Aligned_cols=96  Identities=13%  Similarity=0.051  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788           11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD   90 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~   90 (126)
                      ..++++++++...+.+.+...++.+..+++.+. -+.+...            ....++++.|+ ++||.+.|.......
T Consensus       299 ~~~~~~l~~~~~~~~~~l~~~g~~~~~~~~pIv-~v~~~~~------------~~a~~~~~~L~-~~Gi~v~~i~~PtVp  364 (401)
T d1fc4a_         299 SELRDRLWANARQFREQMSAAGFTLAGADHAII-PVMLGDA------------VVAQKFARELQ-KEGIYVTGFFYPVVP  364 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBCCSSSSEE-EEEEECH------------HHHHHHHHHHH-HTTEECCEECTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhhcccCCccCCCCCCEE-EEEECCH------------HHHHHHHHHHH-HCCceEEeECCCCCC
Confidence            456788888888888888887777766666533 2333321            02457888875 889998874322211


Q ss_pred             cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                          .+...+|++++.  ++++|+..++.|.++.++
T Consensus       365 ----~g~~~lRi~~~a~hT~edId~~v~al~ev~~~  396 (401)
T d1fc4a_         365 ----KGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             ----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence                246679999975  999999999999988663

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0014  Score=45.70  Aligned_cols=96  Identities=8%  Similarity=0.039  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      +..+.+++++..+++.+.+...|+....++    ....+.+.+++.   +         +..+++..|..+.||.+..|.
T Consensus       281 ~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~---~---------~~~~~~~~L~~~~gI~v~~G~  348 (388)
T d1h0ca_         281 LENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAG---Y---------DWRDIVSYVIDHFDIEIMGGL  348 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTT---C---------CHHHHHHHHHHHHCEECEECC
T ss_pred             cccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCC---C---------CHHHHHHHHHhcCCEEEeCCc
Confidence            456666677777777777776664443222    122344556542   2         367888888777899999885


Q ss_pred             CcccCcccCCCCCeEEEE-eeC--ChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYC-FFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~-~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .  ..     ..+.||+| ++.  +.++++..++.|.+++++
T Consensus       349 ~--~~-----~~~~iRis~~g~~~t~edid~li~aL~~~L~~  383 (388)
T d1h0ca_         349 G--PS-----TGKVLRIGLLGCNATRENVDRVTEALRAALQH  383 (388)
T ss_dssp             G--GG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             h--hh-----cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            2  22     24689999 663  678899999999988873

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=97.32  E-value=0.0011  Score=46.26  Aligned_cols=86  Identities=12%  Similarity=0.145  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcc---cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           12 TISEELRPKREILADALDKA-GMVP---VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        12 ~~r~~~~~r~~~l~~~l~~~-g~~~---~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ...+++.++++++.+.|+++ ++++   ..|.+| +++..++...            +..++++.| .++||.+..   +
T Consensus       288 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~~------------~~~~i~~~L-~~~gi~v~~---~  350 (381)
T d1elua_         288 ERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSPL------------GHRAIVQKL-EEQRIYLRT---I  350 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSSS------------CHHHHHHHH-HHTTEECEE---E
T ss_pred             cchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCCC------------CHHHHHHHH-HhCCcEEEe---c
Confidence            33466777788888999887 5554   346777 4445555421            245677764 689998743   2


Q ss_pred             ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                      +       .++++|+|++.  +.++++..++.|+++
T Consensus       351 ~-------~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         351 A-------DPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             T-------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             C-------CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            2       36899999984  788899999888754

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.22  E-value=0.0015  Score=46.71  Aligned_cols=95  Identities=7%  Similarity=-0.024  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      ..+.|..++.+-+.+.+.+...|+.+..+++... -+.+...            ....++++.|+++.||.+.|......
T Consensus       299 ~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~spIv-pv~ig~~------------~~~~~~a~~lL~e~Gi~v~~i~~PtV  365 (396)
T d2bwna1         299 GQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIV-PVVIGDP------------VHTKAVSDMLLSDYGVYVQPINFPTV  365 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSCE-EEECCCH------------HHHHHHHHHHHHHHCEECCEECTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCEE-EEEeCCH------------HHHHHHHHHHHHhCCEEEEEECCCcC
Confidence            3456777777788888888777877765544322 2333321            03557888888788999988554322


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQTW  121 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~  121 (126)
                      .    .+...+|++++.  +.++|+..++.|.++
T Consensus       366 p----~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         366 P----RGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             C----TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             C----CCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            2    246789999985  889999988888763

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0019  Score=45.70  Aligned_cols=93  Identities=6%  Similarity=-0.090  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      ....+.++.++...+.+.|.+.|+.+...++.+. .+.+...            ....++++.|+ ++||.+.|......
T Consensus       287 ~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~Ii-~v~~g~~------------~~a~~~~~~L~-~~Gi~v~~~~~PtV  352 (383)
T d1bs0a_         287 GDARREKLAALITRFRAGVQDLPFTLADSCSAIQ-PLIVGDN------------SRALQLAEKLR-QQGCWVTAIRPPTV  352 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCEECSCCSSBC-CEEEESH------------HHHHHHHHHHH-HTTEECCEECTTSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCEE-EEEECCH------------HHHHHHHHHHH-HCCceEEEEcCCCC
Confidence            3456677778888888888877777655554432 2333321            13557888875 88999988542221


Q ss_pred             CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           90 DEHKHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                      .    .++..+|+++..  ++++|+..++.|..
T Consensus       353 p----~g~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         353 P----AGTARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             C----TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             C----CCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence            1    246679999985  88999999888765

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=96.89  E-value=0.0082  Score=41.58  Aligned_cols=52  Identities=8%  Similarity=-0.106  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE-eeC--ChhHHHHHHHHHHHhhh
Q psy788           65 EDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC-FFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        65 ~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~-~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +..++...|.++.||.|.+|..-.       ..+.||+| ++.  +.|+++..++.|.++++
T Consensus       326 ~~~~l~~~l~~~~gI~v~~G~~~~-------~~~~~RIs~~g~~~t~edI~~ll~alke~L~  380 (388)
T d2ch1a1         326 DWWKVSQYAMNNFSLEVQGGLGPT-------FGKAWRVGIMGECSTVQKIQFYLYGFKESLK  380 (388)
T ss_dssp             CHHHHHHHHHHHHCBCCBCCCGGG-------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhcCCEEEeCCCccc-------cCCEEEEcCCcCCCCHHHHHHHHHHHHHHHH
Confidence            366888887777799999985422       24689999 664  67889999999988876

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=96.68  E-value=0.023  Score=39.93  Aligned_cols=99  Identities=9%  Similarity=-0.093  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccC-----C-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788           11 YTISEELRPKREILADALDKA-GMVPVI-----P-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP   83 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~-----p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p   83 (126)
                      ++++++.....+.+.+.+.+. ++.+..     + .++ .+-+.++..             +..++...| .+.||.+..
T Consensus       298 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-iv~f~~~~~-------------~~~~v~~~L-~~~gI~v~~  362 (408)
T d1t3ia_         298 ENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAA-LASFNVAGL-------------HASDVATMV-DQDGIAIRS  362 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCS-EEEEEETTB-------------CHHHHHHHH-HTTTEECBC
T ss_pred             HHHHHHHHHHHhHHhhhhccCccccccCCCccccCcce-EEEEEeCCC-------------CHHHHHHHH-hhCCcEEec
Confidence            445666666677777777766 343322     1 234 344455542             356677775 689999988


Q ss_pred             CCCcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           84 PSAFYSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        84 g~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      |+...... .....++.+|+|++.  +.++++..++.|+++++.
T Consensus       363 G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         363 GHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             SCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            87653210 000135789999995  889999999999988764

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.048  Score=37.03  Aligned_cols=94  Identities=9%  Similarity=0.018  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788           10 FYTISEELRPKREILADALDKAGMVPVIPD---GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~---gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      .....++.+...+.+.+.+...|+....++   +...+.+.+++.. ..         +..++...| .++|+.+.+|..
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~-~~---------~~~~~~~~l-~~~gi~i~~G~~  328 (361)
T d1m32a_         260 VAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDP-QY---------RFSEFYRRL-KEQGFVIYPGKV  328 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCT-TC---------CHHHHHHHH-HHTTEECEECCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCC-CC---------CHHHHHHHH-HHCCcEEECCCc
Confidence            445556666666777777776664443222   2223345555421 01         356777875 689999998842


Q ss_pred             cccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCF-FK-KDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~  122 (126)
                      .        ..+.+|++. +. ++++++..++.|++++
T Consensus       329 ~--------~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         329 S--------QSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             S--------SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             C--------CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            2        357899984 33 7788888888887764

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=96.18  E-value=0.059  Score=38.25  Aligned_cols=106  Identities=16%  Similarity=0.258  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc--
Q psy788           14 SEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE--   91 (126)
Q Consensus        14 r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~--   91 (126)
                      .+...++.+++.+.|.+.++++..|.++.++.++........    .........+...++.+.||...+........  
T Consensus       324 ~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~  399 (465)
T d1ax4a_         324 LHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQI----PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDP  399 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTS----CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCT
T ss_pred             HHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCC----ccccchhHHHHHHHHHhcCceecccccccccccc
Confidence            344455567888889888889889999999988876431100    00001244556666778898866544322110  


Q ss_pred             ----ccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           92 ----HKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        92 ----~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                          ......+.+||+...   ++|+++..++.|.++++
T Consensus       400 ~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~  438 (465)
T d1ax4a_         400 ATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE  438 (465)
T ss_dssp             TTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred             ccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence                001134689998752   67889988888887765

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.059  Score=37.69  Aligned_cols=98  Identities=10%  Similarity=0.010  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CcccCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788           11 YTISEELRPKREILADALDKAG-MVPVIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~g-~~~~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      +.+.+....-.+.+.+.+...+ ..+..|  .++.. -+.++..             +..++...| .+.||.+..|+..
T Consensus       299 ~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~iv-sf~~~~~-------------~~~~~~~~L-~~~gI~v~~G~~c  363 (405)
T d1jf9a_         299 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVI-AFNLGKH-------------HAYDVGSFL-DNYGIAVRTGHHC  363 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEE-EEEETTC-------------CHHHHHHHH-HHTTEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEE-EEEcCCC-------------CHHHHHHHH-HHCCcEEEccchh
Confidence            3444444444445555555553 333333  34533 3556542             255666664 6899999888754


Q ss_pred             ccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           88 YSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ...- .....++++|+|++.  +.++++..++.|.++.+
T Consensus       364 ~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r  402 (405)
T d1jf9a_         364 AMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  402 (405)
T ss_dssp             CHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            3210 000136889999995  77888988887776654

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=95.61  E-value=0.049  Score=39.10  Aligned_cols=102  Identities=14%  Similarity=0.172  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC--cc---
Q psy788           18 RPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD--EH---   92 (126)
Q Consensus        18 ~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~--~~---   92 (126)
                      .++.+++.+.|.+.|+.+..|.|+..++++.......++   ... ....+++.+++.+.||...|...+...  ..   
T Consensus       319 ~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~---~~~-~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~  394 (456)
T d1c7ga_         319 VKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLT---QDQ-FPAQSLAASIYMETGVRSMERGIVSAGRSKETGE  394 (456)
T ss_dssp             HHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSC---GGG-CHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCC
T ss_pred             HHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCC---ccc-ccHHHHHHHHHHHhCeeecccCccccccCCcccC
Confidence            334467788888888999899999999888653210000   000 024566667777889976553332211  00   


Q ss_pred             -cCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           93 -KHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        93 -~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                       ..+....+||++..   +.+.|+..++.|.++.+
T Consensus       395 ~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~  429 (456)
T d1c7ga_         395 NHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ  429 (456)
T ss_dssp             BCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh
Confidence             00123579999874   67888887888877665

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=95.01  E-value=0.31  Score=33.39  Aligned_cols=48  Identities=13%  Similarity=0.229  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--C-ChhHHHHHHHHHHHhhhcC
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--K-KDETLREASSILQTWRNKN  125 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~-~~e~i~~~~~~l~~~~~~~  125 (126)
                      ..++...| .++||.+.    + .      .++.+|+||+  . +.++++..++.|.++++++
T Consensus       351 ~~~v~~~L-~~~gi~~~----~-r------~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~  401 (404)
T d1qz9a_         351 GYAVIQAL-IDRGVIGD----Y-R------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK  401 (404)
T ss_dssp             HHHHHHHH-HTTTEECE----E-E------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-HHCCCEEe----e-c------CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            55677886 58898531    1 1      2578999996  2 7899999999999999865

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=94.91  E-value=0.1  Score=36.68  Aligned_cols=79  Identities=15%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEE
Q psy788           22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIR  101 (126)
Q Consensus        22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~R  101 (126)
                      +.+.+.++++++....-.-|+++.+++....           .+..+++..+. ++||.+.|.           +.+.+|
T Consensus       321 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~-----------~~~~~~~~~l~-~~Gl~~~~~-----------~~~~ir  377 (404)
T d1z7da1         321 ENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-----------VNVLDICLKLK-ENGLITRDV-----------HDKTIR  377 (404)
T ss_dssp             HHHHHHHTTCTTEEEEEEETTEEEEEECTTT-----------CCHHHHHHHHH-HTTEECCEE-----------TTTEEE
T ss_pred             HHHHHHHhcCCCeEEEEeeCcEEEEEEcCCc-----------ccHHHHHHHHH-hCCeEEecC-----------CCCEEE
Confidence            3344444444332222223556777776431           02456777764 889987541           235577


Q ss_pred             EE--eeCChhHHHHHHHHHHHhhh
Q psy788          102 YC--FFKKDETLREASSILQTWRN  123 (126)
Q Consensus       102 l~--~~~~~e~i~~~~~~l~~~~~  123 (126)
                      |.  +..++++|++++++|.++++
T Consensus       378 ~~Ppl~it~~~id~~~~~l~~alk  401 (404)
T d1z7da1         378 LTPPLCITKEQLDECTEIIVKTVK  401 (404)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EECCcCCCHHHHHHHHHHHHHHHH
Confidence            75  45589999999999999886

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.12  Score=35.29  Aligned_cols=52  Identities=10%  Similarity=0.011  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE-eeC--C---hhHHHHHHHHHHHhhhc
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC-FFK--K---DETLREASSILQTWRNK  124 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~-~~~--~---~e~i~~~~~~l~~~~~~  124 (126)
                      ..++... ++++||.+.+|..  ..    ...+.||++ ++.  .   .+.+..+++.|...++|
T Consensus       324 ~~~~~~~-L~~~gi~i~~G~~--~~----~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~  381 (382)
T d2bkwa1         324 PPDVIAF-LKSHGVVIAGGIH--KD----IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  381 (382)
T ss_dssp             HHHHHHH-HHHTTEECBCCCC--TT----TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHH-HHHCCeEEECCCC--hh----hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence            4466666 4689999998742  11    135789998 652  2   24578888888877765

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.38  Score=32.94  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             CeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           98 NLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        98 ~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      +++|+|++.  +.++++..++.|.++++
T Consensus       350 g~iRiS~~~~nt~edid~l~~~l~~~l~  377 (391)
T d1p3wa_         350 SSIRFSLGRFTTEEEIDYTIELVRKSIG  377 (391)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            689999985  78889999988888766

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.34  Score=34.05  Aligned_cols=89  Identities=11%  Similarity=0.094  Sum_probs=50.4

Q ss_pred             HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEE
Q psy788           22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIR  101 (126)
Q Consensus        22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~R  101 (126)
                      +.+.+.++++++....-.-|+++.+++.....    ....+..-...+...++ ++||.+.|+..+         .+.+|
T Consensus       332 ~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~----~~~~~~~~~~~~~~~l~-~~Gvl~~~~g~~---------~n~i~  397 (425)
T d1sffa_         332 DGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD----HNKPDAKLTAEIVARAR-DKGLILLSCGPY---------YNVLR  397 (425)
T ss_dssp             HHHHHHHHTCTTEEEEEEETTEEEEEEBGGGC----TTSBCHHHHHHHHHHHH-HTTEECEEESTT---------SCEEE
T ss_pred             hhhhhhHhhCCceEEEEccccEEEEEEeccCc----cCCccHHHHHHHHHHHH-HCCCEEeccCCC---------CCEEE
Confidence            33444444444433223335566677643210    00001111345777764 889998774222         35688


Q ss_pred             EEee--CChhHHHHHHHHHHHhhhc
Q psy788          102 YCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus       102 l~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                      ++-.  .++++|++++++|.+++++
T Consensus       398 ~~PpL~it~~eid~~l~~l~~al~e  422 (425)
T d1sffa_         398 ILVPLTIEDAQIRQGLEIISQCFDE  422 (425)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHH
Confidence            8744  5899999999999988763

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.03  E-value=0.51  Score=32.81  Aligned_cols=96  Identities=11%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE----
Q psy788           10 FYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG----   81 (126)
Q Consensus        10 l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v----   81 (126)
                      +..+.+...+..+++.+.|+++    +..+..+.....+.+....              +..++...| .+.||..    
T Consensus       328 ~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~--------------~~~~l~~~L-~~~gI~g~~v~  392 (434)
T d2z67a1         328 YLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS--------------DPVEIAAKL-YNLRVTGPRGI  392 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS--------------CHHHHHHHH-HHTTEESCEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC--------------CHHHHHHHH-HHcCCeeeehh
Confidence            3444455555556666666543    5665444433333333332              355677775 5778842    


Q ss_pred             eCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788           82 IPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQT  120 (126)
Q Consensus        82 ~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~  120 (126)
                      .|...++.........+++|++.+.  ++|+|+..++.|.+
T Consensus       393 ~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         393 KKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             CTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             hhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence            2333222110001135789998874  88899999888865

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.35  E-value=0.51  Score=32.03  Aligned_cols=57  Identities=12%  Similarity=0.122  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCccc------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHK------------HLGENLIRYCFFK--KDETLREASSILQTWRN  123 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~  123 (126)
                      ...+... +.+.||.+.+|+........            ....+++|+|++.  +.++++..++.|.++++
T Consensus       304 ~~~~~~~-L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         304 GSTLQNL-LSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             HHHHHHH-HHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            5566665 56899999888654321100            0013579999985  78899999999988765

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=92.49  E-value=0.65  Score=31.65  Aligned_cols=88  Identities=6%  Similarity=-0.077  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHhCCCcccCCC-cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCC
Q psy788           17 LRPKREILADALDKAGMVPVIPD-GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHL   95 (126)
Q Consensus        17 ~~~r~~~l~~~l~~~g~~~~~p~-gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~   95 (126)
                      .+.++..+...++..|+.+.+.. ..-...+.+|+.   +         +..++...| .+.|+.+.+|.  +.-     
T Consensus       256 ~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g---~---------~~~~~~~~l-~~~gi~i~~G~--~~l-----  315 (348)
T d1iuga_         256 KAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEG---V---------PYARVKEAF-AQRGAVIAGGQ--GPL-----  315 (348)
T ss_dssp             HHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTT---C---------CHHHHHHHH-HTTTEECEECC--GGG-----
T ss_pred             HHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCC---C---------CHHHHHHHH-HHCCeEEEcCc--ccc-----
Confidence            33344455555554466653211 111344566643   2         366777775 68999999884  322     


Q ss_pred             CCCeEEEEe-eC-ChhHHHHHHHHHHHhhhc
Q psy788           96 GENLIRYCF-FK-KDETLREASSILQTWRNK  124 (126)
Q Consensus        96 ~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~~~  124 (126)
                      ....|||+. +. +.++++..++.|.++++.
T Consensus       316 ~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         316 KGKVFRLSLMGAYDRYEALGVAGMFREVLEE  346 (348)
T ss_dssp             TTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            236899975 33 778888999999888764

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=92.33  E-value=0.74  Score=30.94  Aligned_cols=92  Identities=13%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-C-CcccC-C--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788           11 YTISEELRPKREILADALDKA-G-MVPVI-P--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS   85 (126)
Q Consensus        11 ~~~r~~~~~r~~~l~~~l~~~-g-~~~~~-p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~   85 (126)
                      ....+..+.++..+....... . ..... +  .+-.-+.+.+++.   .         +..++...| .+.||.+.+|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~---~---------~~~~~~~~L-~~~GI~~~~G~  327 (361)
T d2c0ra1         261 EGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE---E---------LEKEFVKAS-EQEGFVGLKGH  327 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH---H---------HHHHHHHHH-HHTTEESCBCC
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCc---c---------cHHHHHHHH-HHCCCEEecCC
Confidence            345555566666666666554 2 22211 1  1222344445432   1         356777765 68999988872


Q ss_pred             CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                        +.       -+.||+++-.  +.|+++.-++.|.++.++
T Consensus       328 --~~-------~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         328 --RS-------VGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             --TT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             --Cc-------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence              22       1249999875  889999888888876654

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=91.91  E-value=1.4  Score=31.29  Aligned_cols=93  Identities=13%  Similarity=0.122  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEE-EEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVPVIPDGGYFM-VADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      =++++-+.-..+.+++.+.|.++ |+.+..+..-|.- .++++.              +..+++++|+ +.|+.  +|..
T Consensus       341 GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~--------------~~~~i~k~L~-d~G~~--~~~~  403 (437)
T d1wyua1         341 GLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK--------------DPEAVRRALA-ERGFH--GATP  403 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS--------------CHHHHHHHHH-HTTCC--CCEE
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCC--------------CHHHHHHHHH-hCCCC--CCcc
Confidence            35666666677778888888877 6765444322222 223332              3667888875 77774  3433


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR  122 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~  122 (126)
                      ++..    ..++.+.++++-  +.++|+..++.|++++
T Consensus       404 ~~~~----~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         404 VPRE----YGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             CCTT----SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             cccC----CCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            2221    135778899973  7788888888887653

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=91.51  E-value=1.4  Score=31.58  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceE--EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYF--MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      =++++-+.-..+-.++.+.|...|+++. .++-+|  +.++.+..   +         +..++++.|+ +.|+.  +|+.
T Consensus       340 GL~elA~~~~~~A~Yla~~L~~~G~~~~-~~~~ff~EFvv~~~~~---~---------~~~~i~k~L~-~~G~~--~~~~  403 (471)
T d1wyub1         340 GLKKAAALAVLNARYLKELLKEKGYRVP-YDGPSMHEFVAQPPEG---F---------RALDLAKGLL-ELGFH--PPTV  403 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCBCS-SCSSCCSCEEEBCSTT---C---------CHHHHHHHHH-HTTCC--CCEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCceec-cCcceeeEEeecCCCC---C---------CHHHHHHHHH-HcCCC--CCcc
Confidence            4566667777777888888866677753 233332  23444432   1         3567889876 77774  3443


Q ss_pred             cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      .+..    ..++.+-++++-  +.++|+..++.|.+++++
T Consensus       404 ~~p~----~~~~~llv~vTE~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         404 YFPL----IVKEALMVEPTETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             SCST----TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             cCcC----CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            3332    245677788873  888999999999887763

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.8  Score=32.20  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCcc-cC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788           13 ISEELRPKREILADALDKA-GMVP-VI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS   89 (126)
Q Consensus        13 ~r~~~~~r~~~l~~~l~~~-g~~~-~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~   89 (126)
                      +....++.-+.+.+.|+++ ..+. .. -.-|+++-+++....            +...+...++ ++||.+.|.     
T Consensus       332 ~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~------------~~~~~~~~~~-~~Gl~~~~~-----  393 (429)
T d1s0aa_         332 WQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV------------NMAALQKFFV-EQGVWIRPF-----  393 (429)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCB------------CHHHHHHHHH-HTTEECCCB-----
T ss_pred             ccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCcc------------cHHHHHHHHH-HCCcEEEec-----
Confidence            3344444555666666554 1111 11 123566667776431            3557777765 789987551     


Q ss_pred             CcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788           90 DEHKHLGENLIRYC--FFKKDETLREASSILQTWRN  123 (126)
Q Consensus        90 ~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~  123 (126)
                             .+.+|++  +..++++|++++++|.++++
T Consensus       394 -------g~~i~~~Ppl~it~~eid~~~~~l~~al~  422 (429)
T d1s0aa_         394 -------GKLIYLMPPYIILPQQLQRLTAAVNRAVQ  422 (429)
T ss_dssp             -------TTEEEECCCTTCCHHHHHHHHHHHHHHTS
T ss_pred             -------CCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence                   2468887  44589999999999998875

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=90.37  E-value=1.1  Score=31.28  Aligned_cols=46  Identities=15%  Similarity=0.164  Sum_probs=33.1

Q ss_pred             HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788           67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK  124 (126)
Q Consensus        67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~  124 (126)
                      ..+...|+ ++||.+.|+. +         ..++ ++++.++++|+++++.|.+++++
T Consensus       381 ~~~~~~ll-~~Gv~l~p~~-~---------~~~~-~~l~~Te~dId~~l~al~~al~~  426 (427)
T d2gsaa_         381 SRFHRGML-EQGIYLAPSQ-F---------EAGF-TSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHHH-HTTEECCSST-T---------SCEE-CCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHH-HCCEEECCCC-C---------ccee-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            35666765 7899987742 1         2233 57677899999999999998864

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.84  Score=31.80  Aligned_cols=87  Identities=20%  Similarity=0.269  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHhC--CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788           15 EELRPKREILADALDKA--GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH   92 (126)
Q Consensus        15 ~~~~~r~~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~   92 (126)
                      +..++.-..+.+.|.++  .+....-.-|++.-+++.....          ....++...+. ++||.+.|.        
T Consensus       312 ~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~----------~~~~~~~~~l~-~~Gvl~~~~--------  372 (404)
T d2byla1         312 ENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----------WDAWKVCLRLR-DNGLLAKPT--------  372 (404)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSS----------CCHHHHHHHHH-HTTEECEEE--------
T ss_pred             hhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCc----------hhHHHHHHHHH-hCCeEEecC--------
Confidence            34455555666666665  1111111235555566654210          13557888865 889988761        


Q ss_pred             cCCCCCeEEEEe--eCChhHHHHHHHHHHHhhh
Q psy788           93 KHLGENLIRYCF--FKKDETLREASSILQTWRN  123 (126)
Q Consensus        93 ~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~  123 (126)
                         +.+.+|++-  ..++++|++++++|.++++
T Consensus       373 ---~~~~i~l~PpL~it~~~id~~~~~l~~al~  402 (404)
T d2byla1         373 ---HGDIIRFAPPLVIKEDELRESIEIINKTIL  402 (404)
T ss_dssp             ---ETTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence               135678863  3488999999999998876

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=2  Score=28.30  Aligned_cols=49  Identities=10%  Similarity=0.143  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK  124 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~  124 (126)
                      ..+|... +.+.||.+..|.  ..       -+.||+|+..  ++|+++.-++.|.++.++
T Consensus       308 ~~~~~~~-l~~~Gi~~~~G~--~~-------~g~~Ris~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         308 DKLFLEE-SFAAGLHALKGH--RV-------VGGMRASIYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             HHHHHHH-HHHTTEECCBCC--TT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHCCCEeecCC--Cc-------cCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            5567776 468999988872  11       2349999975  788899988888887654

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.71  E-value=1.6  Score=30.87  Aligned_cols=59  Identities=17%  Similarity=0.067  Sum_probs=41.6

Q ss_pred             ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHH
Q psy788           41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSIL  118 (126)
Q Consensus        41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l  118 (126)
                      |+++-++++...            ...++...+. ++||.+.|.           +.+.+||.  +..++++++.++++|
T Consensus       399 Gl~~~ie~~~~~------------~~~~i~~~~~-~~Gll~~~~-----------~~~~ir~~PpL~it~~eid~~~~~l  454 (461)
T d1ohwa_         399 GTFCSFDTPDES------------IRNKLISIAR-NKGVMLGGC-----------GDKSIRFRPTLVFRDHHAHLFLNIF  454 (461)
T ss_dssp             TTEEEEECSSHH------------HHHHHHHHHH-HTTEECEEE-----------TTTEEECCCCTTCCHHHHHHHHHHH
T ss_pred             eEEEEEEcCCHH------------HHHHHHHHHH-HCCeEEeeC-----------CCCEEEEeCCcCCCHHHHHHHHHHH
Confidence            666667776421            2457778765 789988662           13567774  445889999999999


Q ss_pred             HHhhh
Q psy788          119 QTWRN  123 (126)
Q Consensus       119 ~~~~~  123 (126)
                      .++++
T Consensus       455 ~~~l~  459 (461)
T d1ohwa_         455 SDILA  459 (461)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=84.05  E-value=3.3  Score=28.82  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc------
Q psy788           18 RPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE------   91 (126)
Q Consensus        18 ~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~------   91 (126)
                      .++.+++.+.|.+.+..+.++.+. .+.++.....   +.....+ .....++..++.+.||.......+....      
T Consensus       331 ~~~~~~l~~~L~~~~~~v~~~~~~-~~~~~~~~~~---~~~~~~~-~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~  405 (467)
T d2v1pa1         331 IAQVQYLVDGLEEIGVVCQQAGGH-AAFVDAGKLL---PHIPADQ-FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGK  405 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECSS-CEEEEHHHHS---TTSCGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred             HHHHHHHHHHHHhcCCcccCCCcc-ceeecchhhc---CCcchhh-hhhHHHHHHHHHHcCCeeecccccccccccccCC
Confidence            344566777777766665544333 2223322110   0000000 1234556666778898654433222110      


Q ss_pred             ccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           92 HKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        92 ~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                      ........+||++..   +.|+|+..++.|.++.+
T Consensus       406 ~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~  440 (467)
T d2v1pa1         406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_dssp             BCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            001235789998863   77888888888877665

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.70  E-value=5.4  Score=27.95  Aligned_cols=102  Identities=11%  Similarity=0.038  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788            9 YFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF   87 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f   87 (126)
                      ..+...++..+|.+.|.+.|.+.|+++.. .--.-.+++++...+  +         +..++.. ++.+.||.+---+..
T Consensus       282 ~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlvdl~~~~--~---------~G~~a~~-~Le~~gI~~Nkn~iP  349 (416)
T d1dfoa_         282 EFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKN--L---------TGKEADA-ALGRANITVNKNSVP  349 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---------CHHHHHH-HHHHTTEECEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCceeEEEecccC--C---------CHHHHHH-HHHHcCeEEeCCcCC
Confidence            34667777888889999999988988753 122346678886432  2         2444444 467999987643333


Q ss_pred             ccCcccCCCCCeEEEEee------CChhHHHHHHHHHHHhhh
Q psy788           88 YSDEHKHLGENLIRYCFF------KKDETLREASSILQTWRN  123 (126)
Q Consensus        88 ~~~~~~~~~~~~~Rl~~~------~~~e~i~~~~~~l~~~~~  123 (126)
                      +... +...+..+||+-.      ..++++++-.+.|.++++
T Consensus       350 ~d~~-~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~  390 (416)
T d1dfoa_         350 NDPK-SPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD  390 (416)
T ss_dssp             TCSS-CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            3211 1123578999764      256777777777666654

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=83.01  E-value=3.2  Score=28.47  Aligned_cols=83  Identities=12%  Similarity=0.115  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCc-ccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788           15 EELRPKREILADALDKAGMV-PVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH   92 (126)
Q Consensus        15 ~~~~~r~~~l~~~l~~~g~~-~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~   92 (126)
                      +..++.-+.+.+.|+++.-+ +... .-|++.-+++...             ....+... ..+.|+.+.+.        
T Consensus       300 ~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~ie~~~~-------------~~~~~~~~-~~~~g~l~~~~--------  357 (387)
T d1vefa1         300 ERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK-------------AAPYIARL-EKEHRVLALQA--------  357 (387)
T ss_dssp             HHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC-------------SHHHHHHH-HHHHCEECEES--------
T ss_pred             chHhhhhHHHHHHHHhcCCCceEEEeecceEEEEEEeCC-------------chHHHHHH-HHHCCCeEEec--------
Confidence            34445555666777654211 2111 2255666777642             13345554 45778876541        


Q ss_pred             cCCCCCeEEEE--eeCChhHHHHHHHHHHHhh
Q psy788           93 KHLGENLIRYC--FFKKDETLREASSILQTWR  122 (126)
Q Consensus        93 ~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~  122 (126)
                         +.+.+|++  +..++++++++++++.+++
T Consensus       358 ---g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         358 ---GPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             ---STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ---CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence               24567776  4458899999999998876

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.41  E-value=6.4  Score=27.79  Aligned_cols=95  Identities=7%  Similarity=-0.016  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788            9 YFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA   86 (126)
Q Consensus         9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~   86 (126)
                      -++.+.+..-+..+.+.+.|++. ++.+ .+|+-+.-+ .++...    +       .-..++.+++..+..+.+.|.. 
T Consensus       373 g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~-Fr~~~~----d-------~~n~~l~~~l~~~G~~~~s~t~-  439 (476)
T d1js3a_         373 GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVC-FRLKGS----D-------GLNEALLERINSARKIHLVPCR-  439 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEE-EEESSC----H-------HHHHHHHHHHHHHTSCBCEEEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEE-EEccCC----h-------HHHHHHHHHHHhcCCEEEeeee-
Confidence            34555555556667788888877 6765 466667433 344321    1       0134566776544334444311 


Q ss_pred             cccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788           87 FYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN  123 (126)
Q Consensus        87 f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~  123 (126)
                        .     .+..++|++++.   +++.++..++.|.+..+
T Consensus       440 --~-----~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~  472 (476)
T d1js3a_         440 --L-----RGQFVLRFAICSRKVESGHVRLAWEHIRGLAA  472 (476)
T ss_dssp             --E-----TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --E-----CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence              1     245689999873   66789999988887644

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=82.37  E-value=5.9  Score=27.36  Aligned_cols=51  Identities=12%  Similarity=-0.036  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788           66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK  124 (126)
Q Consensus        66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~  124 (126)
                      ...+.+.++ +.|+.....  ...     ...+.+|++-.  .++++|++++++|.+++++
T Consensus       377 ~~~i~~~~~-~~Gl~~~~~--~~~-----~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~  429 (431)
T d1zoda1         377 GAKITRECM-NLGLSMNIV--QLP-----GMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER  429 (431)
T ss_dssp             HHHHHHHHH-HTTEECCEE--CCT-----TSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HhCcccCee--eec-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            345677754 788763221  111     13467888644  5889999999999998875